| 61 |
0.008575 |
0.4523 |
b3464 |
ftsY |
-13.38 |
0.017655 |
71 -- 119 |
2 -- 50 |
Signal Recognition Particle (SRP) receptor |
|
_____________70__________________________________________________120\n_____________|___________________________________________________|\n5'-CCC...UCCGC______ACACAUACUUGCA_______AU______U________________ACUAU...CGG-3'\n______________CAGAUA_____________GGCGGUG__GUGAAU_AAGUUAA__GUGAUAG\n______________||||:|_____________|:||||:__:|:|||_|||||||__:||||||\n______________GUCUGU_____________CUGCCAU__UAUUUA_UUCAAUU__UACUAUC\n3'-UUU...CAUUU______AAGUCUUUACUUA_______________U_______AC_______G-5'\n_____________|___________________________________________________|\n_____________51__________________________________________________1\n |
113 -- 119 |
2 -- 8 |
-30.4135 kcal/mol |
10.695 kcal/mol |
6.33478 kcal/mol |
70 120@LB@ | |@LB@5'-CCC...UCCGC ACACAUACUUGCA AU U ACUAU...CGG-3'@LB@ CAGAUA GGCGGUG GUGAAU AAGUUAA GUGAUAG@LB@ ||||:| |:||||: :|:||| ||||||| :||||||@LB@ GUCUGU CUGCCAU UAUUUA UUCAAUU UACUAUC@LB@3'-UUU...CAUUU AAGUCUUUACUUA U AC G-5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -30.4135 kcal/mol@LB@Unfolding Energy - mRNA 10.695 kcal/mol@LB@Unfolding Energy - sRNA 6.33478 kcal/mol@LB@@LB@Position - mRNA 71 -- 119@LB@Position - sRNA 2 -- 50@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 62 |
0.008588 |
0.4523 |
b1746 |
astD |
-15.44 |
0.005443 |
188 -- 231 |
17 -- 59 |
succinylglutamic semialdehyde dehydrogenase |
|
_____________187___________________________________________232\n_____________|_____________________________________________|\n5'-GCA...CGCAG___A_A__________GACUUU______UA_______C_______CGGGC...AUG-3'\n______________AGG_G_AAACAG_CAU______AUGGAU__ACGGUGA_UGGAUAA\n______________|||_|_||||||_|||______|||:||__|||||:|_|::||||\n______________UCC_C_UUUGUC_GUA______UACUUA__UGCCAUU_AUUUAUU\n3'-UUU...CUUUA___C_A______U___AGUCUU______C________________UCAAU...UCG-5'\n_____________|_____________________________________________|\n_____________60____________________________________________16\n |
217 -- 223 |
24 -- 30 |
-28.1653 kcal/mol |
6.40491 kcal/mol |
6.3229 kcal/mol |
187 232@LB@ | |@LB@5'-GCA...CGCAG A A GACUUU UA C CGGGC...AUG-3'@LB@ AGG G AAACAG CAU AUGGAU ACGGUGA UGGAUAA@LB@ ||| | |||||| ||| |||:|| |||||:| |::||||@LB@ UCC C UUUGUC GUA UACUUA UGCCAUU AUUUAUU@LB@3'-UUU...CUUUA C A U AGUCUU C UCAAU...UCG-5'@LB@ | |@LB@ 60 16@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.1653 kcal/mol@LB@Unfolding Energy - mRNA 6.40491 kcal/mol@LB@Unfolding Energy - sRNA 6.3229 kcal/mol@LB@@LB@Position - mRNA 188 -- 231@LB@Position - sRNA 17 -- 59@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 63 |
0.008816 |
0.4523 |
b3600 |
mtlD |
-11.23 |
0.053963 |
184 -- 208 |
1 -- 23 |
mannitol-1-phosphate dehydrogenase NAD-dependent |
|
_____________183_______________________209\n_____________|_________________________|\n5'-GUG...AACAU___UG_________ACU____A___AUUAC...AUC-3'\n______________UGA__AAGGUUAAU___AUGA_AGC\n______________|:|__||:||||||___||||_|||\n______________AUU__UUUCAAUUA___UACU_UCG\n3'-UUU...CCAUU___UA_________C______A___-5'\n_____________|________________________|\n_____________24_______________________1\n |
191 -- 197 |
10 -- 16 |
-14.8386 kcal/mol |
3.50103 kcal/mol |
0.105066 kcal/mol |
183 209@LB@ | |@LB@5'-GUG...AACAU UG ACU A AUUAC...AUC-3'@LB@ UGA AAGGUUAAU AUGA AGC@LB@ |:| ||:|||||| |||| |||@LB@ AUU UUUCAAUUA UACU UCG@LB@3'-UUU...CCAUU UA C A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -14.8386 kcal/mol@LB@Unfolding Energy - mRNA 3.50103 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 184 -- 208@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 64 |
0.008913 |
0.4523 |
b4231 |
yjfF |
-11.33 |
0.051476 |
106 -- 140 |
1 -- 41 |
putative sugar ABC transporter permease |
|
_____________105_______________________________________141\n_____________|_________________________________________|\n5'-CGG...CCGCC_________CCA_______________C_____________UUUGC...GAG-3'\n______________AGAGAUGAA____GGUGGUGA___AAG__GGUGGUGGU_GC\n______________|||:|||||____|||::|:|___|||__::||:||:|_||\n______________UCUUUACUU____CCAUUAUU___UUC__UUACUACUA_CG\n3'-UUU...GUAAG_________ACUG________UAU___AA_________U__-5'\n_____________|________________________________________|\n_____________42_______________________________________1\n |
132 -- 138 |
4 -- 10 |
-27.205 kcal/mol |
9.83395 kcal/mol |
6.043 kcal/mol |
105 141@LB@ | |@LB@5'-CGG...CCGCC CCA C UUUGC...GAG-3'@LB@ AGAGAUGAA GGUGGUGA AAG GGUGGUGGU GC@LB@ |||:||||| |||::|:| ||| ::||:||:| ||@LB@ UCUUUACUU CCAUUAUU UUC UUACUACUA CG@LB@3'-UUU...GUAAG ACUG UAU AA U -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -27.205 kcal/mol@LB@Unfolding Energy - mRNA 9.83395 kcal/mol@LB@Unfolding Energy - sRNA 6.043 kcal/mol@LB@@LB@Position - mRNA 106 -- 140@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 65 |
0.009342 |
0.4523 |
b0871 |
poxB |
-9.00 |
0.151653 |
248 -- 256 |
51 -- 59 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________247_______257\n_____________|_________|\n5'-CCG...UCGGC_________ACGCA...GUG-3'\n______________AGGGGUGAA\n______________||||||:||\n______________UCCCCAUUU\n3'-UUU...CUUUA_________GUCUG...UCG-5'\n_____________|_________|\n_____________60________50\n |
250 -- 256 |
51 -- 57 |
-12.9194 kcal/mol |
3.39064 kcal/mol |
0.532875 kcal/mol |
247 257@LB@ | |@LB@5'-CCG...UCGGC ACGCA...GUG-3'@LB@ AGGGGUGAA@LB@ ||||||:||@LB@ UCCCCAUUU@LB@3'-UUU...CUUUA GUCUG...UCG-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -9.00 kcal/mol@LB@Hybridization Energy -12.9194 kcal/mol@LB@Unfolding Energy - mRNA 3.39064 kcal/mol@LB@Unfolding Energy - sRNA 0.532875 kcal/mol@LB@@LB@Position - mRNA 248 -- 256@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 66 |
0.009484 |
0.4523 |
b4034 |
malE |
-12.98 |
0.021943 |
73 -- 123 |
2 -- 55 |
maltose transporter subunit |
|
_____________72_____________________________________________________124\n_____________|______________________________________________________|\n5'-AGG...AUUCU_________G_____CACAAAGC_________GGC______GC__G__G_____AAAGA...UGG-3'\n______________GU_AACAGA_A_UCA_________GACGGUGG___GUAGGG__AA_GA_GAUGG\n______________||_||||||_|_|||_________||||||::___:||::|__||_||_|||:|\n______________CA_UUGUCU_U_AGU_________CUGCCAUU___UAUUUC__UU_CU_CUAUC\n3'-UUU...AUCCC__U______G_A___CUUUACUUA________AUU______AA__A__A_____G-5'\n_____________|______________________________________________________|\n_____________56_____________________________________________________1\n |
95 -- 101 |
24 -- 30 |
-30.2337 kcal/mol |
10.9143 kcal/mol |
6.33752 kcal/mol |
72 124@LB@ | |@LB@5'-AGG...AUUCU G CACAAAGC GGC GC G G AAAGA...UGG-3'@LB@ GU AACAGA A UCA GACGGUGG GUAGGG AA GA GAUGG@LB@ || |||||| | ||| ||||||:: :||::| || || |||:|@LB@ CA UUGUCU U AGU CUGCCAUU UAUUUC UU CU CUAUC@LB@3'-UUU...AUCCC U G A CUUUACUUA AUU AA A A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -30.2337 kcal/mol@LB@Unfolding Energy - mRNA 10.9143 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 73 -- 123@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 67 |
0.009794 |
0.4523 |
b2823 |
ppdC |
-12.40 |
0.029910 |
245 -- 275 |
3 -- 28 |
putative prepilin peptidase-dependent protein |
|
_____________244_____________________________276\n_____________|_______________________________|\n5'-ACG...CCGGA_______UUGGC_____U_____________AUUGU...UCC-3'\n______________GGUAAUG_____GAUGG_GUUGAUGGUGAUG\n______________||||||:_____:||::_|||:|||:||||:\n______________CCAUUAU_____UUAUU_CAAUUACUACUAU\n3'-UUU...UACUG_________________U_____________CG-5'\n_____________|_______________________________|\n_____________29______________________________2\n |
269 -- 275 |
3 -- 9 |
-21.5159 kcal/mol |
8.35299 kcal/mol |
0.766561 kcal/mol |
244 276@LB@ | |@LB@5'-ACG...CCGGA UUGGC U AUUGU...UCC-3'@LB@ GGUAAUG GAUGG GUUGAUGGUGAUG@LB@ ||||||: :||:: |||:|||:||||:@LB@ CCAUUAU UUAUU CAAUUACUACUAU@LB@3'-UUU...UACUG U CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -12.40 kcal/mol@LB@Hybridization Energy -21.5159 kcal/mol@LB@Unfolding Energy - mRNA 8.35299 kcal/mol@LB@Unfolding Energy - sRNA 0.766561 kcal/mol@LB@@LB@Position - mRNA 245 -- 275@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 68 |
0.00983 |
0.4523 |
b1321 |
ycjX |
-10.80 |
0.066674 |
34 -- 41 |
55 -- 62 |
DUF463 family protein puatative P-loop NTPase |
|
_____________33_______42\n_____________|________|\n5'-UGA...UAAAU________ACAUA...CAG-3'\n______________AGUAGGGG\n______________|:||||||\n______________UUAUCCCC\n3'-UUU...CAACU________AUUUG...UCG-5'\n_____________|________|\n_____________63_______54\n |
35 -- 41 |
55 -- 61 |
-12.2037 kcal/mol |
1.3787 kcal/mol |
0.0270923 kcal/mol |
33 42@LB@ | |@LB@5'-UGA...UAAAU ACAUA...CAG-3'@LB@ AGUAGGGG@LB@ |:||||||@LB@ UUAUCCCC@LB@3'-UUU...CAACU AUUUG...UCG-5'@LB@ | |@LB@ 63 54@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -12.2037 kcal/mol@LB@Unfolding Energy - mRNA 1.3787 kcal/mol@LB@Unfolding Energy - sRNA 0.0270923 kcal/mol@LB@@LB@Position - mRNA 34 -- 41@LB@Position - sRNA 55 -- 62@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 69 |
0.009861 |
0.4523 |
b0879 |
macB |
-12.35 |
0.030572 |
144 -- 182 |
1 -- 59 |
macrolide ABC transporter peremase/ATPase |
|
_____________143___________________________________________________________183\n_____________|_____________________________________________________________|\n5'-AAU...GUCAA____CUUG_____________________________________________________CAAAC...CGG-3'\n______________AGGG____AAGCGGGC_______GAUGAA_G_UGGUGAU____________UGGUGA_GGC\n______________||||____||:|:|:|_______:|||||_|_:|||:||____________||:|||_:||\n______________UCCC____UUUGUCUG_______UUACUU_C_GCCAUUA____________ACUACU_UCG\n3'-UUU...CUUUA____CA__________UAAGUCU______A_U_______UUUAUUUCAAUU______A___-5'\n_____________|____________________________________________________________|\n_____________60___________________________________________________________1\n |
167 -- 173 |
23 -- 29 |
-29.0987 kcal/mol |
10.4067 kcal/mol |
6.33764 kcal/mol |
143 183@LB@ | |@LB@5'-AAU...GUCAA CUUG CAAAC...CGG-3'@LB@ AGGG AAGCGGGC GAUGAA G UGGUGAU UGGUGA GGC@LB@ |||| ||:|:|:| :||||| | :|||:|| ||:||| :||@LB@ UCCC UUUGUCUG UUACUU C GCCAUUA ACUACU UCG@LB@3'-UUU...CUUUA CA UAAGUCU A U UUUAUUUCAAUU A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -29.0987 kcal/mol@LB@Unfolding Energy - mRNA 10.4067 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 144 -- 182@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 70 |
0.01004 |
0.4523 |
b1658 |
purR |
-15.06 |
0.006831 |
174 -- 223 |
1 -- 65 |
transcriptional repressor hypoxanthine-binding |
|
_____________173________________________________________________________________224\n_____________|__________________________________________________________________|\n5'-UUU...GGAGC______UA____C______GU_________G_______AAC______A__________________GAAAC...GCA-3'\n______________UGAAGU__GGGU___UGGA______GAAAU_GAAUGGC___AAUAAA__________GAUG_UAGC\n______________||||:|__||||___::||______|||||_|||||:|___||||||__________||||_||||\n______________ACUUUA__CCCA___GUCU______CUUUA_CUUACUG___UUAUUU__________CUAC_AUCG\n3'-UUU...GGCCA______UC____UUU____GUAAGU_____________CCA______AUUUCAAUUA____U____-5'\n_____________|_________________________________________________________________|\n_____________66________________________________________________________________1\n |
199 -- 205 |
29 -- 35 |
-29.7477 kcal/mol |
7.45199 kcal/mol |
7.23987 kcal/mol |
173 224@LB@ | |@LB@5'-UUU...GGAGC UA C GU G AAC A GAAAC...GCA-3'@LB@ UGAAGU GGGU UGGA GAAAU GAAUGGC AAUAAA GAUG UAGC@LB@ ||||:| |||| ::|| ||||| |||||:| |||||| |||| ||||@LB@ ACUUUA CCCA GUCU CUUUA CUUACUG UUAUUU CUAC AUCG@LB@3'-UUU...GGCCA UC UUU GUAAGU CCA AUUUCAAUUA U -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -29.7477 kcal/mol@LB@Unfolding Energy - mRNA 7.45199 kcal/mol@LB@Unfolding Energy - sRNA 7.23987 kcal/mol@LB@@LB@Position - mRNA 174 -- 223@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 29 -- 35@LB@ |
