Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 5739552

Input and runtime details for job 5739552 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 5739552 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:35:34 CET 2014
?Processing Started@ Mon Oct 27 22:04:36 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 22:45:43 CET 2014
?Post-Processing Finished@ Mon Oct 27 22:45:43 CET 2014
?Job Completed@ Mon Oct 27 22:45:53 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=5739552&toolName=CopraRNA ( 30 days expiry )

The job description you specified

IhtA

Output download complete results [zip]

Downloadable files

[csv]
[txt]
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[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000117 Chlamydia trachomatis D/UW-3/CX

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 0.0003738 0.3585 ct_802 rs18 -7.56 0.188253 66 -- 75 25 -- 34 30S ribosomal protein S18   0
2 0.003306 0.9504 ct_743 hctA -8.41 0.118404 212 -- 220 82 -- 90 histone-like protein   0
3 0.008069 0.9504 ct_066 N/A -9.66 0.056261 190 -- 205 17 -- 33     0
4 0.01057 0.9504 ct_455 murA -9.97 0.046419 254 -- 264 26 -- 36 UDP-N-acetylglucosamine 1-carboxyvinyltransferase   0
5 0.01375 0.9504 ct_336 ptsI -5.52 0.480767 91 -- 112 16 -- 35 PTS system PEP phosphotransferase   0
6 0.01723 0.9504 ct_026 rs16 -8.65 0.103399 201 -- 209 13 -- 21 30S ribosomal protein S16   0
7 0.01773 0.9504 ct_855 fumC -8.02 0.147124 201 -- 207 82 -- 88 fumarate hydratase   1
8 0.02246 0.9504 ct_722 pgm -8.68 0.101599 218 -- 230 17 -- 29 2 3-bisphosphoglycerate-dependent phosphoglycerate mutase   0
9 0.02483 0.9504 ct_671 N/A -7.80 0.165757 104 -- 117 18 -- 33     0
10 0.02521 0.9504 ct_728 N/A -12.66 0.007348 189 -- 219 3 -- 33     0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1