151 |
0.06398 |
0.3424 |
ct_647 |
N/A |
-6.81 |
0.158308 |
265 -- 281 |
12 -- 34 |
|
|
_____________264_____________________282\n_____________|_______________________|\n5'-UAU...UGCAA_______________________CGUCA...AGG-3'\n______________UAGGAGC______AUGGUGUUGG\n______________:||:|||______||||:|||:|\n______________GUCUUCG______UACCGCAAUC\n3'-UUU...UCUCA_______AUAAGG__________UUAUG...GAA-5'\n_____________|_______________________|\n_____________35______________________11\n |
274 -- 280 |
13 -- 19 |
-18.8273 kcal/mol |
3.44317 kcal/mol |
8.57325 kcal/mol |
264 282@LB@ | |@LB@5'-UAU...UGCAA CGUCA...AGG-3'@LB@ UAGGAGC AUGGUGUUGG@LB@ :||:||| ||||:|||:|@LB@ GUCUUCG UACCGCAAUC@LB@3'-UUU...UCUCA AUAAGG UUAUG...GAA-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -18.8273 kcal/mol@LB@Unfolding Energy - mRNA 3.44317 kcal/mol@LB@Unfolding Energy - sRNA 8.57325 kcal/mol@LB@@LB@Position - mRNA 265 -- 281@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 13 -- 19@LB@ |
152 |
0.064 |
0.3424 |
ct_749 |
alaS |
-4.53 |
0.436714 |
274 -- 290 |
41 -- 57 |
alanine--tRNA ligase |
|
_____________273_______________291\n_____________|_________________|\n5'-AAA...AUCUU_______UUUCCC____AAUGA...CUU-3'\n______________CUCCUGU______GCAU\n______________|:|||||______:||:\n______________GGGGACA______UGUG\n3'-UUU...GAAGG_______CAUGUU____AUCUC...GAA-5'\n_____________|_________________|\n_____________58________________40\n |
274 -- 280 |
51 -- 57 |
-13.0187 kcal/mol |
0.670655 kcal/mol |
7.82241 kcal/mol |
273 291@LB@ | |@LB@5'-AAA...AUCUU UUUCCC AAUGA...CUU-3'@LB@ CUCCUGU GCAU@LB@ |:||||| :||:@LB@ GGGGACA UGUG@LB@3'-UUU...GAAGG CAUGUU AUCUC...GAA-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -4.53 kcal/mol@LB@Hybridization Energy -13.0187 kcal/mol@LB@Unfolding Energy - mRNA 0.670655 kcal/mol@LB@Unfolding Energy - sRNA 7.82241 kcal/mol@LB@@LB@Position - mRNA 274 -- 290@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 51 -- 57@LB@ |
153 |
0.06453 |
0.3424 |
ct_729 |
serS |
-6.28 |
0.205305 |
1 -- 23 |
3 -- 33 |
serine--tRNA ligase |
|
______________1______________________________24\n______________|______________________________|\n___________5'-____C_G_____U__________________CCUCA...UGG-3'\n______________AGAA_C_AUUCC_UG________AUGCCAAC\n______________||||_|_|||||_||________||:|||||\n______________UCUU_G_UAAGG_AC________UAUGGUUG\n3'-UUU...CUCAG____C_A_____U__CGCAAUCU________AA-5'\n_____________|_______________________________|\n_____________34______________________________2\n |
17 -- 23 |
3 -- 9 |
-16.9997 kcal/mol |
2.1318 kcal/mol |
8.59196 kcal/mol |
1 24@LB@ | |@LB@ 5'- C G U CCUCA...UGG-3'@LB@ AGAA C AUUCC UG AUGCCAAC@LB@ |||| | ||||| || ||:|||||@LB@ UCUU G UAAGG AC UAUGGUUG@LB@3'-UUU...CUCAG C A U CGCAAUCU AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -6.28 kcal/mol@LB@Hybridization Energy -16.9997 kcal/mol@LB@Unfolding Energy - mRNA 2.1318 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 1 -- 23@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 3 -- 9@LB@ |
154 |
0.06467 |
0.3424 |
ct_517 |
rl24 |
-3.21 |
0.671117 |
143 -- 150 |
27 -- 34 |
50S ribosomal protein L24 |
|
_____________142______151\n_____________|________|\n5'-UAA...CGAGA________UUGUU...AGG-3'\n______________CAGAGGCU\n______________||||:|||\n______________GUCUUCGA\n3'-UUU...UCUCA________UAAGG...GAA-5'\n_____________|________|\n_____________35_______26\n |
144 -- 150 |
27 -- 33 |
-11.3134 kcal/mol |
3.50051 kcal/mol |
4.59929 kcal/mol |
142 151@LB@ | |@LB@5'-UAA...CGAGA UUGUU...AGG-3'@LB@ CAGAGGCU@LB@ ||||:|||@LB@ GUCUUCGA@LB@3'-UUU...UCUCA UAAGG...GAA-5'@LB@ | |@LB@ 35 26@LB@@LB@@LB@Energy -3.21 kcal/mol@LB@Hybridization Energy -11.3134 kcal/mol@LB@Unfolding Energy - mRNA 3.50051 kcal/mol@LB@Unfolding Energy - sRNA 4.59929 kcal/mol@LB@@LB@Position - mRNA 143 -- 150@LB@Position - sRNA 27 -- 34@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 27 -- 33@LB@ |
155 |
0.06493 |
0.3424 |
ct_355 |
N/A |
-6.27 |
0.205473 |
16 -- 22 |
80 -- 86 |
|
|
_____________15______23\n_____________|_______|\n5'-GUU...UUCUG_______GGUCC...CCU-3'\n______________ACGGCUG\n______________||||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
16 -- 22 |
80 -- 86 |
-10.68 kcal/mol |
3.341 kcal/mol |
1.06449 kcal/mol |
15 23@LB@ | |@LB@5'-GUU...UUCUG GGUCC...CCU-3'@LB@ ACGGCUG@LB@ ||||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -10.68 kcal/mol@LB@Unfolding Energy - mRNA 3.341 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 16 -- 22@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
156 |
0.06505 |
0.3424 |
ct_254 |
N/A |
-6.97 |
0.146186 |
84 -- 91 |
80 -- 87 |
|
|
_____________83_______92\n_____________|________|\n5'-GUC...AUCGU________GCGUU...UAC-3'\n______________UAUGGCUG\n______________||:||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
85 -- 91 |
80 -- 86 |
-9.90306 kcal/mol |
1.8348 kcal/mol |
1.09752 kcal/mol |
83 92@LB@ | |@LB@5'-GUC...AUCGU GCGUU...UAC-3'@LB@ UAUGGCUG@LB@ ||:||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.97 kcal/mol@LB@Hybridization Energy -9.90306 kcal/mol@LB@Unfolding Energy - mRNA 1.8348 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 84 -- 91@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 80 -- 86@LB@ |
157 |
0.06639 |
0.3424 |
ct_213 |
rpiA |
-7.48 |
0.112460 |
245 -- 274 |
28 -- 57 |
ribose-5-phosphate isomerase A |
|
_____________244____________________________275\n_____________|______________________________|\n5'-GAA...UUUUU____AUCAA_____A_____C_C_______AGUAG...UGU-3'\n______________CCCU_____GCAGA_ACUAG_G_UAGAGGC\n______________|||:_____:||:|_|||||_|_:|||:||\n______________GGGG_____UGUUU_UGAUC_C_GUCUUCG\n3'-UUU...GAAGG____ACACA_____G_____U_A_______AUAAG...GAA-5'\n_____________|______________________________|\n_____________58_____________________________27\n |
268 -- 274 |
28 -- 34 |
-25.4315 kcal/mol |
5.87242 kcal/mol |
12.0748 kcal/mol |
244 275@LB@ | |@LB@5'-GAA...UUUUU AUCAA A C C AGUAG...UGU-3'@LB@ CCCU GCAGA ACUAG G UAGAGGC@LB@ |||: :||:| ||||| | :|||:||@LB@ GGGG UGUUU UGAUC C GUCUUCG@LB@3'-UUU...GAAGG ACACA G U A AUAAG...GAA-5'@LB@ | |@LB@ 58 27@LB@@LB@@LB@Energy -7.48 kcal/mol@LB@Hybridization Energy -25.4315 kcal/mol@LB@Unfolding Energy - mRNA 5.87242 kcal/mol@LB@Unfolding Energy - sRNA 12.0748 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 28 -- 57@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 28 -- 34@LB@ |
158 |
0.06677 |
0.3424 |
ct_770 |
fabF |
-2.81 |
0.742017 |
6 -- 13 |
26 -- 33 |
3-oxoacyl-ACP synthase |
|
_____________5________14\n_____________|________|\n______5'-UAUAG________AAAAA...GUG-3'\n______________AGGAGUUA\n______________||:||:||\n______________UCUUCGAU\n3'-UUU...CUCAG________AAGGU...GAA-5'\n_____________|________|\n_____________34_______25\n |
7 -- 13 |
26 -- 32 |
-8.27201 kcal/mol |
0.759487 kcal/mol |
4.69868 kcal/mol |
5 14@LB@ | |@LB@ 5'-UAUAG AAAAA...GUG-3'@LB@ AGGAGUUA@LB@ ||:||:||@LB@ UCUUCGAU@LB@3'-UUU...CUCAG AAGGU...GAA-5'@LB@ | |@LB@ 34 25@LB@@LB@@LB@Energy -2.81 kcal/mol@LB@Hybridization Energy -8.27201 kcal/mol@LB@Unfolding Energy - mRNA 0.759487 kcal/mol@LB@Unfolding Energy - sRNA 4.69868 kcal/mol@LB@@LB@Position - mRNA 6 -- 13@LB@Position - sRNA 26 -- 33@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 26 -- 32@LB@ |
159 |
0.06732 |
0.3424 |
ct_663 |
N/A |
-7.57 |
0.107718 |
228 -- 234 |
15 -- 21 |
type III secretion system chaperone |
|
_____________227_____235\n_____________|_______|\n5'-UCU...AUUUU_______AUAUG...GCC-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
228 -- 234 |
15 -- 21 |
-10.4333 kcal/mol |
1.67755 kcal/mol |
1.18845 kcal/mol |
227 235@LB@ | |@LB@5'-UCU...AUUUU AUAUG...GCC-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -10.4333 kcal/mol@LB@Unfolding Energy - mRNA 1.67755 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 228 -- 234@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 15 -- 21@LB@ |
160 |
0.06752 |
0.3424 |
ct_324 |
N/A |
-4.86 |
0.383763 |
195 -- 205 |
17 -- 27 |
|
|
_____________194_________206\n_____________|___________|\n5'-ACA...GUAGA__GG_______CAAAG...UGC-3'\n______________UA__CCAUGGU\n______________||__||||||:\n______________AU__GGUACCG\n3'-UUU...CUUCG__AA_______CAAUC...GAA-5'\n_____________|___________|\n_____________28__________16\n |
199 -- 205 |
17 -- 23 |
-11.7516 kcal/mol |
2.4023 kcal/mol |
4.49196 kcal/mol |
194 206@LB@ | |@LB@5'-ACA...GUAGA GG CAAAG...UGC-3'@LB@ UA CCAUGGU@LB@ || ||||||:@LB@ AU GGUACCG@LB@3'-UUU...CUUCG AA CAAUC...GAA-5'@LB@ | |@LB@ 28 16@LB@@LB@@LB@Energy -4.86 kcal/mol@LB@Hybridization Energy -11.7516 kcal/mol@LB@Unfolding Energy - mRNA 2.4023 kcal/mol@LB@Unfolding Energy - sRNA 4.49196 kcal/mol@LB@@LB@Position - mRNA 195 -- 205@LB@Position - sRNA 17 -- 27@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |