171 |
0.07267 |
0.3448 |
ct_057 |
gcpE |
-5.03 |
0.358241 |
27 -- 78 |
18 -- 60 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) |
|
_____________26____________________________________________________79\n_____________|_____________________________________________________|\n5'-AGA...GAACA____UCAA_______AAUU________AUUUUUAAAG_______UC_______AGACC...AAU-3'\n______________UCCC____CCC_GUG____UAUAAACA__________GGAAGUU__UCCAUGG\n______________||||____|||_|||____||:|||||__________:||||:|__|||||||\n______________AGGG____GGG_CAC____AUGUUUGU__________UCUUCGA__AGGUACC\n3'-UUU...ACUGA___________A_______________GAUCUCAG_________UA_______GCAAU...GAA-5'\n_____________|_____________________________________________________|\n_____________61____________________________________________________17\n |
72 -- 78 |
18 -- 24 |
-36.1086 kcal/mol |
16.1769 kcal/mol |
14.9054 kcal/mol |
26 79@LB@ | |@LB@5'-AGA...GAACA UCAA AAUU AUUUUUAAAG UC AGACC...AAU-3'@LB@ UCCC CCC GUG UAUAAACA GGAAGUU UCCAUGG@LB@ |||| ||| ||| ||:||||| :||||:| |||||||@LB@ AGGG GGG CAC AUGUUUGU UCUUCGA AGGUACC@LB@3'-UUU...ACUGA A GAUCUCAG UA GCAAU...GAA-5'@LB@ | |@LB@ 61 17@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -36.1086 kcal/mol@LB@Unfolding Energy - mRNA 16.1769 kcal/mol@LB@Unfolding Energy - sRNA 14.9054 kcal/mol@LB@@LB@Position - mRNA 27 -- 78@LB@Position - sRNA 18 -- 60@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 18 -- 24@LB@ |
172 |
0.07285 |
0.3448 |
ct_090 |
lcrD |
-6.84 |
0.155915 |
81 -- 102 |
18 -- 39 |
low calcium response protein D |
|
_____________80______________________103\n_____________|_______________________|\n5'-AUU...GGAAA___________U________GA_ACCAC...UGU-3'\n______________AGAGUU_GAAG_UUAUUCCA__G\n______________|||||:_||||_:|||||||__|\n______________UCUCAG_CUUC_GAUAAGGU__C\n3'-UUU...UGUGA______U_____________AC_GCAAU...GAA-5'\n_____________|_______________________|\n_____________40______________________17\n |
93 -- 99 |
21 -- 27 |
-20.344 kcal/mol |
3.91171 kcal/mol |
9.59078 kcal/mol |
80 103@LB@ | |@LB@5'-AUU...GGAAA U GA ACCAC...UGU-3'@LB@ AGAGUU GAAG UUAUUCCA G@LB@ |||||: |||| :||||||| |@LB@ UCUCAG CUUC GAUAAGGU C@LB@3'-UUU...UGUGA U AC GCAAU...GAA-5'@LB@ | |@LB@ 40 17@LB@@LB@@LB@Energy -6.84 kcal/mol@LB@Hybridization Energy -20.344 kcal/mol@LB@Unfolding Energy - mRNA 3.91171 kcal/mol@LB@Unfolding Energy - sRNA 9.59078 kcal/mol@LB@@LB@Position - mRNA 81 -- 102@LB@Position - sRNA 18 -- 39@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 21 -- 27@LB@ |
173 |
0.07335 |
0.3448 |
ct_543 |
hisS |
-6.45 |
0.189015 |
1 -- 7 |
82 -- 88 |
histidine--tRNA ligase |
|
______________1______8\n______________|______|\n___________5'-_______GUAUU...AGC-3'\n______________AUGCGGC\n______________||:||||\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
1 -- 7 |
82 -- 88 |
-9.9342 kcal/mol |
2.38776 kcal/mol |
1.09753 kcal/mol |
1 8@LB@ | |@LB@ 5'- GUAUU...AGC-3'@LB@ AUGCGGC@LB@ ||:||||@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -6.45 kcal/mol@LB@Hybridization Energy -9.9342 kcal/mol@LB@Unfolding Energy - mRNA 2.38776 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 1 -- 7@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 82 -- 88@LB@ |
174 |
0.07335 |
0.3448 |
ct_777 |
bioF |
-7.25 |
0.126962 |
76 -- 92 |
19 -- 34 |
8-amino-7-oxononanoate synthase |
|
_____________75________________93\n_____________|_________________|\n5'-CUG...UCAGG_______G_____U___UUGGG...UUU-3'\n______________UAGAAGC_AUUCC_AUG\n______________:||||||_|||||_|||\n______________GUCUUCG_UAAGG_UAC\n3'-UUU...UCUCA_______A_________CGCAA...GAA-5'\n_____________|_________________|\n_____________35________________18\n |
76 -- 82 |
28 -- 34 |
-16.4612 kcal/mol |
4.23516 kcal/mol |
4.97732 kcal/mol |
75 93@LB@ | |@LB@5'-CUG...UCAGG G U UUGGG...UUU-3'@LB@ UAGAAGC AUUCC AUG@LB@ :|||||| ||||| |||@LB@ GUCUUCG UAAGG UAC@LB@3'-UUU...UCUCA A CGCAA...GAA-5'@LB@ | |@LB@ 35 18@LB@@LB@@LB@Energy -7.25 kcal/mol@LB@Hybridization Energy -16.4612 kcal/mol@LB@Unfolding Energy - mRNA 4.23516 kcal/mol@LB@Unfolding Energy - sRNA 4.97732 kcal/mol@LB@@LB@Position - mRNA 76 -- 92@LB@Position - sRNA 19 -- 34@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 28 -- 34@LB@ |
175 |
0.07342 |
0.3448 |
ct_738 |
yycJ |
-7.78 |
0.096435 |
160 -- 204 |
18 -- 50 |
Zn-dependent hydrolase |
|
_____________159____________________________________________205\n_____________|______________________________________________|\n5'-CAU...ACCGC_____________UCCAAUUAUCAAA______C_A___A_______AAGGU...AAC-3'\n______________GU_CAAAUACUAG_____________UCAGGA_G_UUA_UCCAUGG\n______________||_||||:|||||_____________||||:|_|_:||_|||||||\n______________CA_GUUUGUGAUC_____________AGUCUU_C_GAU_AGGUACC\n3'-UUU...GGACA__U__________UC_______________________A_______GCAAU...GAA-5'\n_____________|______________________________________________|\n_____________51_____________________________________________17\n |
198 -- 204 |
18 -- 24 |
-28.1471 kcal/mol |
7.4527 kcal/mol |
12.9164 kcal/mol |
159 205@LB@ | |@LB@5'-CAU...ACCGC UCCAAUUAUCAAA C A A AAGGU...AAC-3'@LB@ GU CAAAUACUAG UCAGGA G UUA UCCAUGG@LB@ || ||||:||||| ||||:| | :|| |||||||@LB@ CA GUUUGUGAUC AGUCUU C GAU AGGUACC@LB@3'-UUU...GGACA U UC A GCAAU...GAA-5'@LB@ | |@LB@ 51 17@LB@@LB@@LB@Energy -7.78 kcal/mol@LB@Hybridization Energy -28.1471 kcal/mol@LB@Unfolding Energy - mRNA 7.4527 kcal/mol@LB@Unfolding Energy - sRNA 12.9164 kcal/mol@LB@@LB@Position - mRNA 160 -- 204@LB@Position - sRNA 18 -- 50@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 18 -- 24@LB@ |
176 |
0.07518 |
0.3511 |
ct_481 |
N/A |
-6.18 |
0.214715 |
76 -- 94 |
18 -- 35 |
|
|
_____________75__________________95\n_____________|___________________|\n5'-AUA...CCAUU__U___AU___________AAACA...AUU-3'\n______________UC_GAA__CUGUUCUAUGG\n______________||_|||__||:|||:||||\n______________AG_CUU__GAUAAGGUACC\n3'-UUU...AUCUC__U___C____________GCAAU...GAA-5'\n_____________|___________________|\n_____________36__________________17\n |
88 -- 94 |
18 -- 24 |
-16.4052 kcal/mol |
5.24588 kcal/mol |
4.97803 kcal/mol |
75 95@LB@ | |@LB@5'-AUA...CCAUU U AU AAACA...AUU-3'@LB@ UC GAA CUGUUCUAUGG@LB@ || ||| ||:|||:||||@LB@ AG CUU GAUAAGGUACC@LB@3'-UUU...AUCUC U C GCAAU...GAA-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -6.18 kcal/mol@LB@Hybridization Energy -16.4052 kcal/mol@LB@Unfolding Energy - mRNA 5.24588 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 76 -- 94@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 18 -- 24@LB@ |
177 |
0.07605 |
0.3532 |
ct_428 |
ubiE |
-3.67 |
0.587989 |
9 -- 17 |
20 -- 28 |
demethylmenaquinone methyltransferase |
|
_____________8_________18\n_____________|_________|\n___5'-UUCUUCAA_________UUCAG...AUA-3'\n______________CUAUUUCAU\n______________|||||:|||\n______________GAUAAGGUA\n3'-UUU...UCUUC_________CCGCA...GAA-5'\n_____________|_________|\n_____________29________19\n |
10 -- 16 |
21 -- 27 |
-8.26525 kcal/mol |
0.050804 kcal/mol |
4.54807 kcal/mol |
8 18@LB@ | |@LB@ 5'-UUCUUCAA UUCAG...AUA-3'@LB@ CUAUUUCAU@LB@ |||||:|||@LB@ GAUAAGGUA@LB@3'-UUU...UCUUC CCGCA...GAA-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -3.67 kcal/mol@LB@Hybridization Energy -8.26525 kcal/mol@LB@Unfolding Energy - mRNA 0.050804 kcal/mol@LB@Unfolding Energy - sRNA 4.54807 kcal/mol@LB@@LB@Position - mRNA 9 -- 17@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 21 -- 27@LB@ |
178 |
0.07667 |
0.3541 |
ct_386 |
N/A |
-3.82 |
0.559485 |
134 -- 140 |
82 -- 88 |
|
|
_____________133_____141\n_____________|_______|\n5'-CUU...UUUGG_______ACUAC...AGA-3'\n______________AUAUGGU\n______________|||:||:\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
134 -- 140 |
82 -- 88 |
-6.88346 kcal/mol |
1.9622 kcal/mol |
1.09753 kcal/mol |
133 141@LB@ | |@LB@5'-CUU...UUUGG ACUAC...AGA-3'@LB@ AUAUGGU@LB@ |||:||:@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -3.82 kcal/mol@LB@Hybridization Energy -6.88346 kcal/mol@LB@Unfolding Energy - mRNA 1.9622 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 134 -- 140@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 82 -- 88@LB@ |
179 |
0.07718 |
0.3544 |
ct_781 |
lysS |
-5.99 |
0.234962 |
194 -- 201 |
79 -- 86 |
lysine--tRNA ligase |
|
_____________193______202\n_____________|________|\n5'-AAA...AAAGG________UGUCU...AUC-3'\n______________ACGGUUGA\n______________||||:|:|\n______________UGCCGAUU\n3'-UUU...CUCUA________GAGGU...GAA-5'\n_____________|________|\n_____________87_______78\n |
195 -- 201 |
79 -- 85 |
-9.06205 kcal/mol |
1.97593 kcal/mol |
1.09752 kcal/mol |
193 202@LB@ | |@LB@5'-AAA...AAAGG UGUCU...AUC-3'@LB@ ACGGUUGA@LB@ ||||:|:|@LB@ UGCCGAUU@LB@3'-UUU...CUCUA GAGGU...GAA-5'@LB@ | |@LB@ 87 78@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -9.06205 kcal/mol@LB@Unfolding Energy - mRNA 1.97593 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 194 -- 201@LB@Position - sRNA 79 -- 86@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 79 -- 85@LB@ |
180 |
0.07821 |
0.3571 |
ct_831 |
murB |
-7.63 |
0.104376 |
230 -- 248 |
17 -- 33 |
UDP-N-acetylenolpyruvoylglucosamine reductase |
|
_____________229_________________249\n_____________|___________________|\n5'-GUU...GUUCA____U_________UAA__CGCUU...UAA-3'\n______________AGAA_CUGUUCCAU___GC\n______________||||_||:||||||___||\n______________UCUU_GAUAAGGUA___CG\n3'-UUU...CUCAG____C_________C____CAAUC...GAA-5'\n_____________|___________________|\n_____________34__________________16\n |
237 -- 243 |
20 -- 26 |
-14.8604 kcal/mol |
2.25495 kcal/mol |
4.97804 kcal/mol |
229 249@LB@ | |@LB@5'-GUU...GUUCA U UAA CGCUU...UAA-3'@LB@ AGAA CUGUUCCAU GC@LB@ |||| ||:|||||| ||@LB@ UCUU GAUAAGGUA CG@LB@3'-UUU...CUCAG C C CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -14.8604 kcal/mol@LB@Unfolding Energy - mRNA 2.25495 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 230 -- 248@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 20 -- 26@LB@ |