105 |
0.01118 |
0.3575 |
b0439 |
lon |
-14.09 |
0.041610 |
272 -- 293 |
1 -- 24 |
DNA-binding ATP-dependent protease La |
|
_____________271_______294\n_____________|_________|\n5'-AUC...CACAU_________CUUAU...GGG-3'\n______________GGUCAUCCC\n______________|||||||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________25________0\n |
277 -- 283 |
128 -- 134 |
-16.7868 kcal/mol |
1.03204 kcal/mol |
4.55487 kcal/mol |
271 294@LB@ | |@LB@5'-AUC...CACAU CUUAU...GGG-3'@LB@ GGUCAUCCC@LB@ |||||||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 25 0@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -16.7868 kcal/mol@LB@Unfolding Energy - mRNA 1.03204 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 128 -- 134@LB@ |
189 |
0.02188 |
0.3833 |
b4033 |
malF |
-11.66 |
0.130598 |
273 -- 284 |
194 -- 205 |
maltose transporter subunit |
|
_____________272__________285\n_____________|____________|\n5'-CUG...UCGGC____________UACCU...UAA-3'\n______________CUGCUGGUGGGU\n______________|||||||:||||\n______________GACGACCGCCCA\n3'-UUU...UAUUA____________CUAAA...UAG-5'\n_____________|____________|\n_____________206__________193\n |
278 -- 284 |
194 -- 200 |
-24.1506 kcal/mol |
7.59361 kcal/mol |
9.05892 kcal/mol |
272 285@LB@ | |@LB@5'-CUG...UCGGC UACCU...UAA-3'@LB@ CUGCUGGUGGGU@LB@ |||||||:||||@LB@ GACGACCGCCCA@LB@3'-UUU...UAUUA CUAAA...UAG-5'@LB@ | |@LB@ 206 193@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -24.1506 kcal/mol@LB@Unfolding Energy - mRNA 7.59361 kcal/mol@LB@Unfolding Energy - sRNA 9.05892 kcal/mol@LB@@LB@Position - mRNA 273 -- 284@LB@Position - sRNA 194 -- 205@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 194 -- 200@LB@ |
181 |
0.0209 |
0.3833 |
b2233 |
yfaL |
-9.66 |
0.317681 |
275 -- 285 |
50 -- 60 |
adhesin |
|
_____________274______________286\n_____________|________________|\n5'-UAU...UCUCU___AA__G________CGGUC...CAU-3'\n______________GCU__CG_UGUCGCGG\n______________:||__||_||||||||\n______________UGA__GC_ACAGCGCC\n3'-UUU...CGUGU___A___G________AUUUU...UAG-5'\n_____________|________________|\n_____________61_______________49\n |
279 -- 285 |
50 -- 56 |
-20.2435 kcal/mol |
4.65708 kcal/mol |
6.1451 kcal/mol |
274 286@LB@ | |@LB@5'-UAU...UCUCU AA G CGGUC...CAU-3'@LB@ GCU CG UGUCGCGG@LB@ :|| || ||||||||@LB@ UGA GC ACAGCGCC@LB@3'-UUU...CGUGU A G AUUUU...UAG-5'@LB@ | |@LB@ 61 49@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -20.2435 kcal/mol@LB@Unfolding Energy - mRNA 4.65708 kcal/mol@LB@Unfolding Energy - sRNA 6.1451 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 50 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
40 |
0.003515 |
0.2912 |
b0188 |
tilS |
-11.97 |
0.112782 |
278 -- 295 |
116 -- 133 |
tRNA(Ile)-lysidine synthetase |
|
______________278__________________296\n______________|____________________|\n___________5'-_________GG____G_____CCUUG...UGC-3'\n______________CAUCGAUGC__CAGU_GCGCA\n______________||:|:||:|__||||_:|:||\n______________GUGGUUAUG__GUCA_UGUGU\n3'-UUU...AAAAU_________A_____G_____ACUAC...UAG-5'\n_____________|_____________________|\n_____________134___________________115\n |
3 -- 9 |
178 -- 184 |
-23.3684 kcal/mol |
8.15392 kcal/mol |
5.05466 kcal/mol |
278 296@LB@ | |@LB@ 5'- GG G CCUUG...UGC-3'@LB@ CAUCGAUGC CAGU GCGCA@LB@ ||:|:||:| |||| :|:||@LB@ GUGGUUAUG GUCA UGUGU@LB@3'-UUU...AAAAU A G ACUAC...UAG-5'@LB@ | |@LB@ 134 115@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3684 kcal/mol@LB@Unfolding Energy - mRNA 8.15392 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 278 -- 295@LB@Position - sRNA 116 -- 133@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 178 -- 184@LB@ |
151 |
0.01691 |
0.3749 |
b2442 |
intZ |
-12.49 |
0.088679 |
278 -- 291 |
17 -- 31 |
CPZ-55 prophage; putative phage integrase |
b2349 |
_____________277_________________292\n_____________|___________________|\n5'-ACA...AAACU____________C_G____CGGGG...UGC-3'\n______________CACCGAU__UCA_U_ACGC\n______________||||:||__|||_|_||:|\n______________GUGGUUA__AGU_A_UGUG\n3'-UUU...AAAAU_______UG___C_G____UACUA...UAG-5'\n_____________|___________________|\n_____________32__________________16\n |
269 -- 275 |
180 -- 186 |
-14.1411 kcal/mol |
1.5591 kcal/mol |
4.88042 kcal/mol |
277 292@LB@ | |@LB@5'-ACA...AAACU C G CGGGG...UGC-3'@LB@ CACCGAU UCA U ACGC@LB@ ||||:|| ||| | ||:|@LB@ GUGGUUA AGU A UGUG@LB@3'-UUU...AAAAU UG C G UACUA...UAG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -14.1411 kcal/mol@LB@Unfolding Energy - mRNA 1.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.88042 kcal/mol@LB@@LB@Position - mRNA 278 -- 291@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 180 -- 186@LB@ |
200 |
0.02363 |
0.3833 |
b3068 |
mug |
-12.10 |
0.106144 |
279 -- 297 |
1 -- 19 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________278__________________298\n_____________|____________________|\n5'-UGG...GGACU___UU_______________CGG-3'\n______________GGU__UCCCUUUGCU_CAUC\n______________||:__:|||:|||||_||||\n______________CCG__GGGGGAACGA_GUAG\n3'-UUU...GUACC___U___________A____-5'\n_____________|___________________|\n_____________20__________________1\n |
287 -- 293 |
6 -- 12 |
-22.9494 kcal/mol |
3.41941 kcal/mol |
8.43224 kcal/mol |
278 298@LB@ | |@LB@5'-UGG...GGACU UU CGG-3'@LB@ GGU UCCCUUUGCU CAUC@LB@ ||: :|||:||||| ||||@LB@ CCG GGGGGAACGA GUAG@LB@3'-UUU...GUACC U A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.9494 kcal/mol@LB@Unfolding Energy - mRNA 3.41941 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 6 -- 12@LB@ |
22 |
0.001812 |
0.2633 |
b2566 |
era |
-10.12 |
0.260747 |
283 -- 292 |
16 -- 26 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________282________________293\n_____________|__________________|\n5'-UUG...AAUGA_________AA_______UGCGG...UCU-3'\n______________GCAUCGAUA___AGUUAC\n______________:||:|:|||___|||:||\n______________UGUGGUUAU___UCAGUG\n3'-UUU...UAAAA_________GAG______UGUAC...UAG-5'\n_____________|__________________|\n_____________27_________________15\n |
205 -- 211 |
181 -- 187 |
-15.5423 kcal/mol |
3.87874 kcal/mol |
4.86686 kcal/mol |
282 293@LB@ | |@LB@5'-UUG...AAUGA AA UGCGG...UCU-3'@LB@ GCAUCGAUA AGUUAC@LB@ :||:|:||| |||:||@LB@ UGUGGUUAU UCAGUG@LB@3'-UUU...UAAAA GAG UGUAC...UAG-5'@LB@ | |@LB@ 27 15@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -15.5423 kcal/mol@LB@Unfolding Energy - mRNA 3.87874 kcal/mol@LB@Unfolding Energy - sRNA 4.86686 kcal/mol@LB@@LB@Position - mRNA 283 -- 292@LB@Position - sRNA 16 -- 26@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 181 -- 187@LB@ |
104 |
0.01113 |
0.3575 |
b2108 |
yehA |
-14.54 |
0.033608 |
284 -- 300 |
56 -- 72 |
putative fimbrial-like adhesin protein |
|
_____________283_____________300\n_____________|_______________|\n5'-GUU...CUGUU___________G____-3'\n______________CAGCACAACUU_GUUG\n______________|||||||||||_|:||\n______________GUCGUGUUGAA_CGAC\n3'-UUU...CGUUG___________G____AGCGC...UAG-5'\n_____________|________________|\n_____________73_______________55\n |
289 -- 295 |
61 -- 67 |
-24.1215 kcal/mol |
2.36332 kcal/mol |
11.1531 kcal/mol |
283 300@LB@ | |@LB@5'-GUU...CUGUU G -3'@LB@ CAGCACAACUU GUUG@LB@ ||||||||||| |:||@LB@ GUCGUGUUGAA CGAC@LB@3'-UUU...CGUUG G AGCGC...UAG-5'@LB@ | |@LB@ 73 55@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -24.1215 kcal/mol@LB@Unfolding Energy - mRNA 2.36332 kcal/mol@LB@Unfolding Energy - sRNA 11.1531 kcal/mol@LB@@LB@Position - mRNA 284 -- 300@LB@Position - sRNA 56 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 61 -- 67@LB@ |
154 |
0.01719 |
0.3749 |
b3726 |
pstA |
-9.04 |
0.409183 |
290 -- 297 |
24 -- 31 |
phosphate ABC transporter permease |
|
_____________289____________298\n_____________|______________|\n5'-CAG...CCGUA_________C____U-3'\n______________UUGCGCUGA_GCUC\n______________||:|:|::|_:|||\n______________AAUGUGGUU_UGAG\n3'-UUU...ACUAA_________A____UCAGU...UAG-5'\n_____________|______________|\n_____________32_____________23\n |
288 -- 294 |
181 -- 187 |
-13.2096 kcal/mol |
2.6708 kcal/mol |
3.40409 kcal/mol |
289 298@LB@ | |@LB@5'-CAG...CCGUA C U-3'@LB@ UUGCGCUGA GCUC@LB@ ||:|:|::| :|||@LB@ AAUGUGGUU UGAG@LB@3'-UUU...ACUAA A UCAGU...UAG-5'@LB@ | |@LB@ 32 23@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -13.2096 kcal/mol@LB@Unfolding Energy - mRNA 2.6708 kcal/mol@LB@Unfolding Energy - sRNA 3.40409 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 24 -- 31@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 181 -- 187@LB@ |
196 |
0.0235 |
0.3833 |
b3105 |
yhaJ |
-11.17 |
0.163135 |
292 -- 299 |
86 -- 93 |
LysR family putative transcriptional regulator |
|
_____________291______300\n_____________|________|\n5'-CGG...UGAGC________G-3'\n______________UGGGACGC\n______________||||||||\n______________ACCCUGCG\n3'-UUU...GCAAC________AAUUG...UAG-5'\n_____________|________|\n_____________94_______85\n |
293 -- 299 |
86 -- 92 |
-14.7688 kcal/mol |
2.10679 kcal/mol |
4.21973 kcal/mol |
291 300@LB@ | |@LB@5'-CGG...UGAGC G-3'@LB@ UGGGACGC@LB@ ||||||||@LB@ ACCCUGCG@LB@3'-UUU...GCAAC AAUUG...UAG-5'@LB@ | |@LB@ 94 85@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -14.7688 kcal/mol@LB@Unfolding Energy - mRNA 2.10679 kcal/mol@LB@Unfolding Energy - sRNA 4.21973 kcal/mol@LB@@LB@Position - mRNA 292 -- 299@LB@Position - sRNA 86 -- 93@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 86 -- 92@LB@ |