90 |
0.01008 |
0.3575 |
b3994 |
thiC |
-11.53 |
0.138483 |
145 -- 158 |
1 -- 14 |
phosphomethylpyrimidine synthase |
|
_____________144_________159\n_____________|___________|\n5'-AUG...CGUCU___________CGUCG...UUU-3'\n______________CUUGCUUCAUC\n______________|||||||||||\n______________GAACGAAGUAG\n3'-UUU...UGGGG___________-5'\n_____________|__________|\n_____________15_________1\n |
152 -- 158 |
1 -- 7 |
-17.5294 kcal/mol |
1.22878 kcal/mol |
1.03329 kcal/mol |
144 159@LB@ | |@LB@5'-AUG...CGUCU CGUCG...UUU-3'@LB@ CUUGCUUCAUC@LB@ |||||||||||@LB@ GAACGAAGUAG@LB@3'-UUU...UGGGG -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -17.5294 kcal/mol@LB@Unfolding Energy - mRNA 1.22878 kcal/mol@LB@Unfolding Energy - sRNA 1.03329 kcal/mol@LB@@LB@Position - mRNA 145 -- 158@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
51 |
0.005002 |
0.3217 |
b0115 |
aceF |
-12.52 |
0.087110 |
146 -- 171 |
149 -- 173 |
pyruvate dehydrogenase dihydrolipoyltransacetylase component E2 |
|
_____________145______________________________________172\n_____________|________________________________________|\n5'-GAU...GCAAU_____________________C_______AUA________CCGCG...CGC-3'\n______________CGCCAA_AUUCA_____ACAU_GAUGCAG___AAGUUAAC\n______________|:||||_|:|||_____||||_|||||||___||||:|||\n______________GUGGUU_UGAGU_____UGUA_CUACGUC___UUCAGUUG\n3'-UUU...AAAAU______A_____CAGUG____________CG_________AAAGU...UAG-5'\n_____________|________________________________________|\n_____________174______________________________________148\n |
165 -- 171 |
149 -- 155 |
-31.6788 kcal/mol |
5.24034 kcal/mol |
12.6269 kcal/mol |
145 172@LB@ | |@LB@5'-GAU...GCAAU C AUA CCGCG...CGC-3'@LB@ CGCCAA AUUCA ACAU GAUGCAG AAGUUAAC@LB@ |:|||| |:||| |||| ||||||| ||||:|||@LB@ GUGGUU UGAGU UGUA CUACGUC UUCAGUUG@LB@3'-UUU...AAAAU A CAGUG CG AAAGU...UAG-5'@LB@ | |@LB@ 174 148@LB@@LB@@LB@Energy -12.52 kcal/mol@LB@Hybridization Energy -31.6788 kcal/mol@LB@Unfolding Energy - mRNA 5.24034 kcal/mol@LB@Unfolding Energy - sRNA 12.6269 kcal/mol@LB@@LB@Position - mRNA 146 -- 171@LB@Position - sRNA 149 -- 173@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 149 -- 155@LB@ |
148 |
0.01584 |
0.3602 |
b1822 |
rlmA |
-10.68 |
0.203557 |
148 -- 239 |
111 -- 186 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________147___________240\n_____________|_____________|\n5'-AAG...GCGUG_____C_______UUGCG...GGU-3'\n______________AUUCG_GUUACAC\n______________|:||:_||:||||\n______________UGAGU_CAGUGUG\n3'-UUU...GGUUA_____________UACUA...UAG-5'\n_____________|_____________|\n_____________187___________110\n |
163 -- 169 |
168 -- 174 |
-12.5288 kcal/mol |
1.89227 kcal/mol |
0.283892 kcal/mol |
147 240@LB@ | |@LB@5'-AAG...GCGUG C UUGCG...GGU-3'@LB@ AUUCG GUUACAC@LB@ |:||: ||:||||@LB@ UGAGU CAGUGUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 187 110@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -12.5288 kcal/mol@LB@Unfolding Energy - mRNA 1.89227 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 148 -- 239@LB@Position - sRNA 111 -- 186@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 168 -- 174@LB@ |
18 |
0.001156 |
0.216 |
b3474 |
yhhT |
-13.05 |
0.067927 |
149 -- 189 |
169 -- 204 |
UPF0118 family putative transporter |
|
_____________148__________________________________________________________________190\n_____________|____________________________________________________________________|\n5'-GAC...GACGU____________UAAG____AGAAUAU________U_ACUCCCGC_____U______AAAA_______AGGAA...UCA-3'\n______________GAAAAUCAGCAG____AAUC_______UGCUGGCG_G________UACAC_UAAUAC____AGUCACA\n______________:||||:||||||____||||_______||||||||_|________|||||_:|||||____|||||||\n______________UUUUUGGUCGUC____UUAG_______ACGACCGC_C________AUGUG_GUUAUG____UCAGUGU\n________3'-UUU____________CAUA_____________________CACUAAA_____________AG_________GUACU...UAG-5'\n_____________|____________________________________________________________________|\n_____________205__________________________________________________________________168\n |
183 -- 189 |
169 -- 175 |
-48.4478 kcal/mol |
16.2259 kcal/mol |
18.3074 kcal/mol |
148 190@LB@ | |@LB@5'-GAC...GACGU UAAG AGAAUAU U ACUCCCGC U AAAA AGGAA...UCA-3'@LB@ GAAAAUCAGCAG AAUC UGCUGGCG G UACAC UAAUAC AGUCACA@LB@ :||||:|||||| |||| |||||||| | ||||| :||||| |||||||@LB@ UUUUUGGUCGUC UUAG ACGACCGC C AUGUG GUUAUG UCAGUGU@LB@ 3'-UUU CAUA CACUAAA AG GUACU...UAG-5'@LB@ | |@LB@ 205 168@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -48.4478 kcal/mol@LB@Unfolding Energy - mRNA 16.2259 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 149 -- 189@LB@Position - sRNA 169 -- 204@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 169 -- 175@LB@ |
167 |
0.01932 |
0.3812 |
b2912 |
fau |
-13.57 |
0.053124 |
153 -- 189 |
109 -- 152 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________152__________190\n_____________|____________|\n5'-GAA...UGAGC____________GUCCG...UGG-3'\n______________AUGCUCGGUC_C\n______________||:|||:|||_|\n______________UAUGAGUCAG_G\n3'-UUU...GUGGU__________U_UGUAC...UAG-5'\n_____________|____________|\n_____________153__________108\n |
31 -- 37 |
172 -- 178 |
-13.9133 kcal/mol |
3.57919 kcal/mol |
0.28482 kcal/mol |
152 190@LB@ | |@LB@5'-GAA...UGAGC GUCCG...UGG-3'@LB@ AUGCUCGGUC C@LB@ ||:|||:||| |@LB@ UAUGAGUCAG G@LB@3'-UUU...GUGGU U UGUAC...UAG-5'@LB@ | |@LB@ 153 108@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -13.9133 kcal/mol@LB@Unfolding Energy - mRNA 3.57919 kcal/mol@LB@Unfolding Energy - sRNA 0.28482 kcal/mol@LB@@LB@Position - mRNA 153 -- 189@LB@Position - sRNA 109 -- 152@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 172 -- 178@LB@ |
147 |
0.01564 |
0.358 |
b3153 |
yhbO |
-15.63 |
0.020103 |
154 -- 186 |
72 -- 98 |
stress-resistance protein |
|
_____________153_______________________________187\n_____________|_________________________________|\n5'-GUU...AUCCC__A________AAUU___CUCAU__________AACGC...UUA-3'\n______________CG_UUGUGGGA____CGC_____CCAAUGCAAC\n______________||_||||||||____|||_____||||:|||||\n______________GC_AACACCCU____GCG_____GGUUGCGUUG\n3'-UUU...AAUUA__________________AAUU___________GUCGU...UAG-5'\n_____________|_________________________________|\n_____________99________________________________71\n |
180 -- 186 |
72 -- 78 |
-31.4938 kcal/mol |
8.17407 kcal/mol |
13.9341 kcal/mol |
153 187@LB@ | |@LB@5'-GUU...AUCCC A AAUU CUCAU AACGC...UUA-3'@LB@ CG UUGUGGGA CGC CCAAUGCAAC@LB@ || |||||||| ||| ||||:|||||@LB@ GC AACACCCU GCG GGUUGCGUUG@LB@3'-UUU...AAUUA AAUU GUCGU...UAG-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -15.63 kcal/mol@LB@Hybridization Energy -31.4938 kcal/mol@LB@Unfolding Energy - mRNA 8.17407 kcal/mol@LB@Unfolding Energy - sRNA 13.9341 kcal/mol@LB@@LB@Position - mRNA 154 -- 186@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 72 -- 78@LB@ |
71 |
0.00726 |
0.3408 |
b2944 |
yggI |
-9.32 |
0.365111 |
156 -- 174 |
1 -- 18 |
Zn-dependent metalloprotease-related protein |
|
_____________155_____________175\n_____________|_______________|\n5'-GAA...AGCCA________AG_____UUUUC...ACC-3'\n______________CCUCUUGC__UCAUC\n______________||:|||||__|||||\n______________GGGGAACG__AGUAG\n3'-UUU...CCGUG________A______-5'\n_____________|______________|\n_____________19_____________1\n |
161 -- 167 |
7 -- 13 |
-18.0684 kcal/mol |
1.30619 kcal/mol |
6.71812 kcal/mol |
155 175@LB@ | |@LB@5'-GAA...AGCCA AG UUUUC...ACC-3'@LB@ CCUCUUGC UCAUC@LB@ ||:||||| |||||@LB@ GGGGAACG AGUAG@LB@3'-UUU...CCGUG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -18.0684 kcal/mol@LB@Unfolding Energy - mRNA 1.30619 kcal/mol@LB@Unfolding Energy - sRNA 6.71812 kcal/mol@LB@@LB@Position - mRNA 156 -- 174@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 7 -- 13@LB@ |
119 |
0.013 |
0.3575 |
b0801 |
ybiC |
-16.26 |
0.015008 |
158 -- 253 |
108 -- 187 |
putative dehydrogenase |
|
_____________157____________________________________________________________________________________________254\n_____________|______________________________________________________________________________________________|\n5'-GCU...AUAAA_____AA__AA______ACAUAAA_____________CAU_____A__________G_UUUGAUGCUCAGAC_____________UA_______UGUAU...UUG-3'\n______________AAUAC__CA__CACAUA_______CAGG__AGUUAAC____GGAA__GUGGUCAUC_C______________GCUGCA_CAGUUU__UUCAGGC\n______________|||||__||__||||:|_______||||__|||:|||____:|||__|:|||||||_|______________:|||||_||||::__||||:||\n______________UUAUG__GU__GUGUGU_______GUCC__UCAGUUG____UCUU__CGCCAGUAG_G______________UGACGU_GUCAGG__AAGUUCG\n3'-UUU...UGUGG_____A___CA______ACUAC______GU_______AAAG____AA_________G_____________________A_______________UACCA...UAG-5'\n_____________|______________________________________________________________________________________________|\n_____________188____________________________________________________________________________________________107\n |
247 -- 253 |
108 -- 114 |
-56.5044 kcal/mol |
18.8914 kcal/mol |
26.5178 kcal/mol |
157 254@LB@ | |@LB@5'-GCU...AUAAA AA AA ACAUAAA CAU A G UUUGAUGCUCAGAC UA UGUAU...UUG-3'@LB@ AAUAC CA CACAUA CAGG AGUUAAC GGAA GUGGUCAUC C GCUGCA CAGUUU UUCAGGC@LB@ ||||| || ||||:| |||| |||:||| :||| |:||||||| | :||||| ||||:: ||||:||@LB@ UUAUG GU GUGUGU GUCC UCAGUUG UCUU CGCCAGUAG G UGACGU GUCAGG AAGUUCG@LB@3'-UUU...UGUGG A CA ACUAC GU AAAG AA G A UACCA...UAG-5'@LB@ | |@LB@ 188 107@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -56.5044 kcal/mol@LB@Unfolding Energy - mRNA 18.8914 kcal/mol@LB@Unfolding Energy - sRNA 26.5178 kcal/mol@LB@@LB@Position - mRNA 158 -- 253@LB@Position - sRNA 108 -- 187@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 108 -- 114@LB@ |
143 |
0.01531 |
0.3575 |
b1641 |
slyB |
-10.83 |
0.190300 |
158 -- 167 |
83 -- 92 |
outer membrane lipoprotein |
|
_____________157____________________________168\n_____________|______________________________|\n5'-CCG...UCACA_______U______UGAC____AGG_____UUGCG...AAG-3'\n______________UAUGCCA_AUACUU____CAUG___GAUGC\n______________||::|||_|||||:____||::___|||||\n______________AUGUGGU_UAUGAG____GUGU___CUACG\n3'-UUU...CUAAA______________UCA_____GUA_____UCCGU...UAG-5'\n_____________|______________________________|\n_____________93_____________________________82\n |
135 -- 141 |
182 -- 188 |
-20.8318 kcal/mol |
7.22081 kcal/mol |
7.72227 kcal/mol |
157 168@LB@ | |@LB@5'-CCG...UCACA U UGAC AGG UUGCG...AAG-3'@LB@ UAUGCCA AUACUU CAUG GAUGC@LB@ ||::||| |||||: ||:: |||||@LB@ AUGUGGU UAUGAG GUGU CUACG@LB@3'-UUU...CUAAA UCA GUA UCCGU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -20.8318 kcal/mol@LB@Unfolding Energy - mRNA 7.22081 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 158 -- 167@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 182 -- 188@LB@ |
60 |
0.005924 |
0.3261 |
b4201 |
priB |
-15.35 |
0.022961 |
159 -- 180 |
18 -- 40 |
primosomal protein N |
|
_____________158_____________181\n_____________|_______________|\n5'-AGG...GAAAC_______C_______ACGAU...AUC-3'\n______________UACCUUC__GCUUCA\n______________:|||::|__||||||\n______________GUGGGGG__CGAAGU\n3'-UUU...ACCCC_______AA______AG-5'\n_____________|_______________|\n_____________41______________17\n |
26 -- 32 |
11 -- 17 |
-15.0598 kcal/mol |
3.0465 kcal/mol |
7.09151 kcal/mol |
158 181@LB@ | |@LB@5'-AGG...GAAAC C ACGAU...AUC-3'@LB@ UACCUUC GCUUCA@LB@ :|||::| ||||||@LB@ GUGGGGG CGAAGU@LB@3'-UUU...ACCCC AA AG-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -15.35 kcal/mol@LB@Hybridization Energy -15.0598 kcal/mol@LB@Unfolding Energy - mRNA 3.0465 kcal/mol@LB@Unfolding Energy - sRNA 7.09151 kcal/mol@LB@@LB@Position - mRNA 159 -- 180@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 11 -- 17@LB@ |