| 97 |
0.01056 |
0.3575 |
b2372 |
yfdV |
-22.84 |
0.000764 |
17 -- 36 |
167 -- 186 |
putative transporter |
|
_____________16___________________37\n_____________|____________________|\n5'-UUC...UUAAC____________________AACCG...CUC-3'\n______________CACCGGUAUUCAGUCGCGCA\n______________||||::||:||||||:|:||\n______________GUGGUUAUGAGUCAGUGUGU\n3'-UUU...AAAAU____________________ACUAC...UAG-5'\n_____________|____________________|\n_____________187__________________166\n |
30 -- 36 |
167 -- 173 |
-32.2779 kcal/mol |
2.6891 kcal/mol |
5.05466 kcal/mol |
16 37@LB@ | |@LB@5'-UUC...UUAAC AACCG...CUC-3'@LB@ CACCGGUAUUCAGUCGCGCA@LB@ ||||::||:||||||:|:||@LB@ GUGGUUAUGAGUCAGUGUGU@LB@3'-UUU...AAAAU ACUAC...UAG-5'@LB@ | |@LB@ 187 166@LB@@LB@@LB@Energy -22.84 kcal/mol@LB@Hybridization Energy -32.2779 kcal/mol@LB@Unfolding Energy - mRNA 2.6891 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 17 -- 36@LB@Position - sRNA 167 -- 186@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 167 -- 173@LB@ |
| 180 |
0.02081 |
0.3833 |
b3728 |
pstS |
-9.23 |
0.378852 |
18 -- 25 |
128 -- 135 |
phosphate ABC transporter periplasmic binding protein |
|
_____________17___________26\n_____________|____________|\n5'-AGA...UCCUA____________GUAGC...GUG-3'\n______________UUUUGCUUC_UC\n______________::|||||||_||\n______________GGAACGAAG_AG\n3'-UUU...GUGGG_________U__-5'\n_____________|___________|\n_____________136_________128\n |
149 -- 155 |
4 -- 10 |
-10.5275 kcal/mol |
1.71006 kcal/mol |
1.04836 kcal/mol |
17 26@LB@ | |@LB@5'-AGA...UCCUA GUAGC...GUG-3'@LB@ UUUUGCUUC UC@LB@ ::||||||| ||@LB@ GGAACGAAG AG@LB@3'-UUU...GUGGG U -5'@LB@ | |@LB@ 136 128@LB@@LB@@LB@Energy -9.23 kcal/mol@LB@Hybridization Energy -10.5275 kcal/mol@LB@Unfolding Energy - mRNA 1.71006 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 18 -- 25@LB@Position - sRNA 128 -- 135@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 134 |
0.01437 |
0.3575 |
b1798 |
leuE |
-11.20 |
0.161096 |
19 -- 44 |
168 -- 191 |
leucine efflux protein |
|
_____________18_________________________45\n_____________|__________________________|\n5'-UGC...AGAAU________________UGCCGA____UACCC...AAA-3'\n______________UUUUACGCCAGUAUUU______GCAC\n______________||||||:|||:||:|:______:|||\n______________AAAAUGUGGUUAUGAG______UGUG\n3'-UUU...CCACU________________UCAG______UACUA...UAG-5'\n_____________|__________________________|\n_____________192________________________167\n |
26 -- 32 |
178 -- 184 |
-22.4094 kcal/mol |
4.02149 kcal/mol |
4.92826 kcal/mol |
18 45@LB@ | |@LB@5'-UGC...AGAAU UGCCGA UACCC...AAA-3'@LB@ UUUUACGCCAGUAUUU GCAC@LB@ ||||||:|||:||:|: :|||@LB@ AAAAUGUGGUUAUGAG UGUG@LB@3'-UUU...CCACU UCAG UACUA...UAG-5'@LB@ | |@LB@ 192 167@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -22.4094 kcal/mol@LB@Unfolding Energy - mRNA 4.02149 kcal/mol@LB@Unfolding Energy - sRNA 4.92826 kcal/mol@LB@@LB@Position - mRNA 19 -- 44@LB@Position - sRNA 168 -- 191@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 178 -- 184@LB@ |
| 4 |
0.0001068 |
0.08442 |
b2069 |
yegD |
-18.64 |
0.004982 |
22 -- 145 |
51 -- 187 |
Hsp70 chaperone family protein |
|
_____________21_________________146\n_____________|__________________|\n5'-CAC...ACAUC__________A_______CGCUU...UGC-3'\n______________GCAUCUCCUU__UUCAUC\n______________|||:|:||||__||||||\n______________CGUGGGGGAA__AAGUAG\n3'-UUU...UACCC__________CG______-5'\n_____________|_________________|\n_____________188_______________51\n |
72 -- 78 |
9 -- 15 |
-21.4418 kcal/mol |
1.05479 kcal/mol |
7.2533 kcal/mol |
21 146@LB@ | |@LB@5'-CAC...ACAUC A CGCUU...UGC-3'@LB@ GCAUCUCCUU UUCAUC@LB@ |||:|:|||| ||||||@LB@ CGUGGGGGAA AAGUAG@LB@3'-UUU...UACCC CG -5'@LB@ | |@LB@ 188 51@LB@@LB@@LB@Energy -18.64 kcal/mol@LB@Hybridization Energy -21.4418 kcal/mol@LB@Unfolding Energy - mRNA 1.05479 kcal/mol@LB@Unfolding Energy - sRNA 7.2533 kcal/mol@LB@@LB@Position - mRNA 22 -- 145@LB@Position - sRNA 51 -- 187@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 80 |
0.008443 |
0.3551 |
b3791 |
wecE |
-14.19 |
0.039608 |
22 -- 66 |
14 -- 64 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
_____________21______________67\n_____________|_______________|\n5'-GAC...ACCGC_______________GGUGA...CCC-3'\n______________GUACU_GGUUAUACA\n______________:||||_:||:|:|||\n______________UAUGA_UCAGUGUGU\n3'-UUU...GUGGU_____G_________ACUAC...UAG-5'\n_____________|_______________|\n_____________65______________13\n |
185 -- 191 |
167 -- 173 |
-12.5686 kcal/mol |
2.73267 kcal/mol |
0.435744 kcal/mol |
21 67@LB@ | |@LB@5'-GAC...ACCGC GGUGA...CCC-3'@LB@ GUACU GGUUAUACA@LB@ :|||| :||:|:|||@LB@ UAUGA UCAGUGUGU@LB@3'-UUU...GUGGU G ACUAC...UAG-5'@LB@ | |@LB@ 65 13@LB@@LB@@LB@Energy -14.19 kcal/mol@LB@Hybridization Energy -12.5686 kcal/mol@LB@Unfolding Energy - mRNA 2.73267 kcal/mol@LB@Unfolding Energy - sRNA 0.435744 kcal/mol@LB@@LB@Position - mRNA 22 -- 66@LB@Position - sRNA 14 -- 64@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 167 -- 173@LB@ |
| 86 |
0.009326 |
0.3575 |
b0899 |
ycaM |
-11.50 |
0.140486 |
23 -- 68 |
127 -- 173 |
putative transporter |
|
_____________22_______________________________________________________69\n_____________|________________________________________________________|\n5'-AGC...GAACU____GUU______UC_____UUUUUU___UCUU__A__U__C____U_________AAUUU...AUG-3'\n______________UACU___UCACAC____UGC______GUU____CU_UC_GA_UUGC__UUAUUCCA\n______________||||___||||||____|||______||:____||_||_||_||||__|:||:|||\n______________AUGA___AGUGUG____ACG______CAG____GA_AG_CU_AACG__AGUAGGGU\n3'-UUU...UGGUU____GUC______UACU___UCCGUU___UU____A__U__U____CC________GACGU...UAG-5'\n_____________|________________________________________________________|\n_____________174______________________________________________________126\n |
62 -- 68 |
127 -- 133 |
-29.7478 kcal/mol |
2.56458 kcal/mol |
15.6497 kcal/mol |
22 69@LB@ | |@LB@5'-AGC...GAACU GUU UC UUUUUU UCUU A U C U AAUUU...AUG-3'@LB@ UACU UCACAC UGC GUU CU UC GA UUGC UUAUUCCA@LB@ |||| |||||| ||| ||: || || || |||| |:||:|||@LB@ AUGA AGUGUG ACG CAG GA AG CU AACG AGUAGGGU@LB@3'-UUU...UGGUU GUC UACU UCCGUU UU A U U CC GACGU...UAG-5'@LB@ | |@LB@ 174 126@LB@@LB@@LB@Energy -11.50 kcal/mol@LB@Hybridization Energy -29.7478 kcal/mol@LB@Unfolding Energy - mRNA 2.56458 kcal/mol@LB@Unfolding Energy - sRNA 15.6497 kcal/mol@LB@@LB@Position - mRNA 23 -- 68@LB@Position - sRNA 127 -- 173@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 127 -- 133@LB@ |
| 128 |
0.01397 |
0.3575 |
b2440 |
eutC |
-11.59 |
0.134682 |
23 -- 48 |
126 -- 153 |
ethanolamine ammonia-lyase small subunit (light chain) |
|
_____________22______________________________49\n_____________|_______________________________|\n______5'-CCGCU_______G_______________AC______GACCA...ACU-3'\n______________GGGUGAU___ACAUC_AUGCUCA__UAC_CA\n______________|||||||___|||:|_||:||||__:||_||\n______________CCCACUA___UGUGG_UAUGAGU__GUG_GU\n3'-UUU...GACCG_______AAA_____U_______CA___U__ACUAC...UAG-5'\n_____________|_______________________________|\n_____________154_____________________________125\n |
19 -- 25 |
175 -- 181 |
-25.4577 kcal/mol |
6.00586 kcal/mol |
5.22711 kcal/mol |
22 49@LB@ | |@LB@ 5'-CCGCU G AC GACCA...ACU-3'@LB@ GGGUGAU ACAUC AUGCUCA UAC CA@LB@ ||||||| |||:| ||:|||| :|| ||@LB@ CCCACUA UGUGG UAUGAGU GUG GU@LB@3'-UUU...GACCG AAA U CA U ACUAC...UAG-5'@LB@ | |@LB@ 154 125@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -25.4577 kcal/mol@LB@Unfolding Energy - mRNA 6.00586 kcal/mol@LB@Unfolding Energy - sRNA 5.22711 kcal/mol@LB@@LB@Position - mRNA 23 -- 48@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 175 -- 181@LB@ |
| 84 |
0.009006 |
0.3575 |
b1924 |
fliD |
-8.51 |
0.498321 |
24 -- 43 |
139 -- 158 |
flagellar filament capping protein |
|
_____________23_____________44\n_____________|______________|\n5'-CGU...UAAAA____C_________UUUUU...UUU-3'\n______________CAAC_UUUAGAAUU\n______________||||_||:||||||\n______________GUUG_AAGUCUUAA\n3'-UUU...GUUCA____A_________CGCCA...UAG-5'\n_____________|______________|\n_____________159____________138\n |
37 -- 43 |
139 -- 145 |
-11.0468 kcal/mol |
1.39956 kcal/mol |
1.83266 kcal/mol |
23 44@LB@ | |@LB@5'-CGU...UAAAA C UUUUU...UUU-3'@LB@ CAAC UUUAGAAUU@LB@ |||| ||:||||||@LB@ GUUG AAGUCUUAA@LB@3'-UUU...GUUCA A CGCCA...UAG-5'@LB@ | |@LB@ 159 138@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -11.0468 kcal/mol@LB@Unfolding Energy - mRNA 1.39956 kcal/mol@LB@Unfolding Energy - sRNA 1.83266 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 139 -- 158@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 139 -- 145@LB@ |
| 37 |
0.00305 |
0.2773 |
b4084 |
alsK |
-13.69 |
0.050122 |
28 -- 80 |
50 -- 101 |
D-allose kinase |
|
_____________27__________________________________________________________81\n_____________|___________________________________________________________|\n5'-GCG...UACGA_____AG________G_________________________A__AAAAA___A_G____CAGGG...AAA-3'\n______________AAUUG__GU_GGACG_UU__CC__UGCAACCAG_GCAACUU_CG_____CUG_U_GCGG\n______________|||:|__||_|||||_||__||__:||||||||_:||||||_||_____|||_|_||||\n______________UUAGC__CA_CCUGC_AA__GG__GCGUUGGUC_UGUUGAA_GC_____GAC_A_CGCC\n3'-UUU...ACCAA_____AA__C_____G__UU__UU_________G____________________G____AUUUU...UAG-5'\n_____________|___________________________________________________________|\n_____________102_________________________________________________________49\n |
56 -- 62 |
61 -- 67 |
-47.5504 kcal/mol |
15.3524 kcal/mol |
25.4279 kcal/mol |
27 81@LB@ | |@LB@5'-GCG...UACGA AG G A AAAAA A G CAGGG...AAA-3'@LB@ AAUUG GU GGACG UU CC UGCAACCAG GCAACUU CG CUG U GCGG@LB@ |||:| || ||||| || || :|||||||| :|||||| || ||| | ||||@LB@ UUAGC CA CCUGC AA GG GCGUUGGUC UGUUGAA GC GAC A CGCC@LB@3'-UUU...ACCAA AA C G UU UU G G AUUUU...UAG-5'@LB@ | |@LB@ 102 49@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -47.5504 kcal/mol@LB@Unfolding Energy - mRNA 15.3524 kcal/mol@LB@Unfolding Energy - sRNA 25.4279 kcal/mol@LB@@LB@Position - mRNA 28 -- 80@LB@Position - sRNA 50 -- 101@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 79 |
0.008119 |
0.3458 |
b0945 |
pyrD |
-11.48 |
0.141710 |
30 -- 41 |
191 -- 202 |
dihydro-orotate oxidase FMN-linked |
|
_____________29______________________42\n_____________|_______________________|\n5'-UGU...AGCAA_____________A___GA____CGU-3'\n______________UUACGCCG_UAUU_CAG__ACGC\n______________||||:||:_||:|_|||__||:|\n______________AAUGUGGU_AUGA_GUC__UGUG\n3'-UUU...ACUAA________U________AG____UACUA...UAG-5'\n_____________|_______________________|\n_____________203_____________________190\n |
277 -- 283 |
182 -- 188 |
-20.4941 kcal/mol |
3.55802 kcal/mol |
4.91485 kcal/mol |
29 42@LB@ | |@LB@5'-UGU...AGCAA A GA CGU-3'@LB@ UUACGCCG UAUU CAG ACGC@LB@ ||||:||: ||:| ||| ||:|@LB@ AAUGUGGU AUGA GUC UGUG@LB@3'-UUU...ACUAA U AG UACUA...UAG-5'@LB@ | |@LB@ 203 190@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.4941 kcal/mol@LB@Unfolding Energy - mRNA 3.55802 kcal/mol@LB@Unfolding Energy - sRNA 4.91485 kcal/mol@LB@@LB@Position - mRNA 30 -- 41@LB@Position - sRNA 191 -- 202@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 182 -- 188@LB@ |
