35 |
0.002227 |
0.2088 |
b1482 |
osmC |
-7.15 |
0.399399 |
183 -- 208 |
14 -- 42 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________182___________________________209\n_____________|_____________________________|\n5'-UAG...UUUAA_____________GCAACAA_________CCAUA...CGU-3'\n______________GCCC_ACAGGAGA_________UGACAAU\n______________||||_||||:|:|_________|||||||\n______________CGGG_UGUCUUUU_________ACUGUUA\n3'-UUU...GUUAC____U________AUUUUAGAC_______UUUCC...UUG-5'\n_____________|_____________________________|\n_____________43____________________________13\n |
202 -- 208 |
14 -- 20 |
-22.1887 kcal/mol |
4.46968 kcal/mol |
10.5676 kcal/mol |
182 209@LB@ | |@LB@5'-UAG...UUUAA GCAACAA CCAUA...CGU-3'@LB@ GCCC ACAGGAGA UGACAAU@LB@ |||| ||||:|:| |||||||@LB@ CGGG UGUCUUUU ACUGUUA@LB@3'-UUU...GUUAC U AUUUUAGAC UUUCC...UUG-5'@LB@ | |@LB@ 43 13@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -22.1887 kcal/mol@LB@Unfolding Energy - mRNA 4.46968 kcal/mol@LB@Unfolding Energy - sRNA 10.5676 kcal/mol@LB@@LB@Position - mRNA 183 -- 208@LB@Position - sRNA 14 -- 42@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 14 -- 20@LB@ |
198 |
0.02539 |
0.4256 |
b1624 |
ydgJ |
-9.27 |
0.170491 |
217 -- 246 |
45 -- 70 |
putative oxidoreductase |
|
_____________216____________________________247\n_____________|______________________________|\n5'-GUA...CAUCC________UU______GUA____U______GCAAA...CGG-3'\n______________GUGUUGGG__GAUUGG___UGGU_AUGCGA\n______________:||||||:__:||::|___|||:_||||:|\n______________UACAACCU__UUAGUC___ACCG_UACGUU\n3'-UUU...AAAUA________U______________U______ACCGG...UUG-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
218 -- 224 |
63 -- 69 |
-23.4852 kcal/mol |
9.77058 kcal/mol |
4.44589 kcal/mol |
216 247@LB@ | |@LB@5'-GUA...CAUCC UU GUA U GCAAA...CGG-3'@LB@ GUGUUGGG GAUUGG UGGU AUGCGA@LB@ :||||||: :||::| |||: ||||:|@LB@ UACAACCU UUAGUC ACCG UACGUU@LB@3'-UUU...AAAUA U U ACCGG...UUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -23.4852 kcal/mol@LB@Unfolding Energy - mRNA 9.77058 kcal/mol@LB@Unfolding Energy - sRNA 4.44589 kcal/mol@LB@@LB@Position - mRNA 217 -- 246@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
76 |
0.006626 |
0.2822 |
b1658 |
purR |
-10.59 |
0.091499 |
175 -- 205 |
41 -- 63 |
transcriptional repressor hypoxanthine-binding |
|
_____________174______________________________206\n_____________|________________________________|\n5'-UUU...GAGCU____________CUGGAGUGA____G______AACAA...GCA-3'\n______________GAAGUUAG_GGU_________AAUG_AAUGGC\n______________:||:|:||_||:_________||||_||||||\n______________UUUUAGUC_CCG_________UUAC_UUACCG\n3'-UUU...CAACC________A________________G______GGUUG...UUG-5'\n_____________|________________________________|\n_____________64_______________________________40\n |
176 -- 182 |
56 -- 62 |
-19.9152 kcal/mol |
5.04846 kcal/mol |
4.27657 kcal/mol |
174 206@LB@ | |@LB@5'-UUU...GAGCU CUGGAGUGA G AACAA...GCA-3'@LB@ GAAGUUAG GGU AAUG AAUGGC@LB@ :||:|:|| ||: |||| ||||||@LB@ UUUUAGUC CCG UUAC UUACCG@LB@3'-UUU...CAACC A G GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -19.9152 kcal/mol@LB@Unfolding Energy - mRNA 5.04846 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 175 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 56 -- 62@LB@ |
152 |
0.01787 |
0.3828 |
b1659 |
ydhB |
-7.85 |
0.308650 |
225 -- 251 |
41 -- 68 |
LysR family putative transcriptional regulator |
|
_____________224__________________________252\n_____________|____________________________|\n5'-CGA...UCGAA____UU__UG____A___C_________AGUUU...UCA-3'\n______________GUUG__GA__CGGU_GCG__GUAAUGGU\n______________||||__:|__|:||_||:__|:|||||:\n______________CAAC__UU__GUCA_CGU__CGUUACCG\n3'-UUU...AUAUA____CU__UA____C___UA________GGUUG...UUG-5'\n_____________|____________________________|\n_____________69___________________________40\n |
245 -- 251 |
41 -- 47 |
-21.9924 kcal/mol |
7.69552 kcal/mol |
6.44645 kcal/mol |
224 252@LB@ | |@LB@5'-CGA...UCGAA UU UG A C AGUUU...UCA-3'@LB@ GUUG GA CGGU GCG GUAAUGGU@LB@ |||| :| |:|| ||: |:|||||:@LB@ CAAC UU GUCA CGU CGUUACCG@LB@3'-UUU...AUAUA CU UA C UA GGUUG...UUG-5'@LB@ | |@LB@ 69 40@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -21.9924 kcal/mol@LB@Unfolding Energy - mRNA 7.69552 kcal/mol@LB@Unfolding Energy - sRNA 6.44645 kcal/mol@LB@@LB@Position - mRNA 225 -- 251@LB@Position - sRNA 41 -- 68@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 41 -- 47@LB@ |
47 |
0.003222 |
0.2306 |
b1667 |
ydhR |
-16.61 |
0.002759 |
245 -- 266 |
34 -- 55 |
putative monooxygenase |
|
_____________244____________________267\n_____________|______________________|\n5'-UUG...CCAUU______C_________G_____CUUAA...AAC-3'\n______________UGGCGA_GCAAUGGCU_AGCAG\n______________||||:|_||||||||:_|:|||\n______________ACCGUU_CGUUACCGG_UUGUC\n3'-UUU...UAGUC______A_________G_____UUUUA...UUG-5'\n_____________|______________________|\n_____________56_____________________33\n |
254 -- 260 |
40 -- 46 |
-33.2096 kcal/mol |
7.64311 kcal/mol |
8.95438 kcal/mol |
244 267@LB@ | |@LB@5'-UUG...CCAUU C G CUUAA...AAC-3'@LB@ UGGCGA GCAAUGGCU AGCAG@LB@ ||||:| ||||||||: |:|||@LB@ ACCGUU CGUUACCGG UUGUC@LB@3'-UUU...UAGUC A G UUUUA...UUG-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -16.61 kcal/mol@LB@Hybridization Energy -33.2096 kcal/mol@LB@Unfolding Energy - mRNA 7.64311 kcal/mol@LB@Unfolding Energy - sRNA 8.95438 kcal/mol@LB@@LB@Position - mRNA 245 -- 266@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 40 -- 46@LB@ |
169 |
0.02007 |
0.3993 |
b1680 |
sufS |
-8.85 |
0.205059 |
78 -- 94 |
33 -- 48 |
cysteine desulfurase stimulated by SufE; selenocysteine lyase PLP-dependent |
|
_____________77________________95\n_____________|_________________|\n5'-AAA...AAUCA____GAU__________UGAUC...CGC-3'\n______________GCAG___GCCCAGCAGA\n______________|||:___|||||:||||\n______________CGUU___CGGGUUGUCU\n3'-UUU...CGUUA____AC___________UUUAU...UUG-5'\n_____________|_________________|\n_____________49________________32\n |
85 -- 91 |
36 -- 42 |
-22.7432 kcal/mol |
5.30025 kcal/mol |
8.59426 kcal/mol |
77 95@LB@ | |@LB@5'-AAA...AAUCA GAU UGAUC...CGC-3'@LB@ GCAG GCCCAGCAGA@LB@ |||: |||||:||||@LB@ CGUU CGGGUUGUCU@LB@3'-UUU...CGUUA AC UUUAU...UUG-5'@LB@ | |@LB@ 49 32@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -22.7432 kcal/mol@LB@Unfolding Energy - mRNA 5.30025 kcal/mol@LB@Unfolding Energy - sRNA 8.59426 kcal/mol@LB@@LB@Position - mRNA 78 -- 94@LB@Position - sRNA 33 -- 48@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 36 -- 42@LB@ |
182 |
0.02271 |
0.4143 |
b1686 |
menI |
-7.81 |
0.313804 |
214 -- 222 |
57 -- 65 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________213_______223\n_____________|_________|\n5'-GGC...GAAAC_________CCCUG...AUG-3'\n______________GGAAAAUCA\n______________|||||||||\n______________CCUUUUAGU\n3'-UUU...UACAA_________CACCG...UUG-5'\n_____________|_________|\n_____________66________56\n |
216 -- 222 |
57 -- 63 |
-11.126 kcal/mol |
2.47866 kcal/mol |
0.839876 kcal/mol |
213 223@LB@ | |@LB@5'-GGC...GAAAC CCCUG...AUG-3'@LB@ GGAAAAUCA@LB@ |||||||||@LB@ CCUUUUAGU@LB@3'-UUU...UACAA CACCG...UUG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.126 kcal/mol@LB@Unfolding Energy - mRNA 2.47866 kcal/mol@LB@Unfolding Energy - sRNA 0.839876 kcal/mol@LB@@LB@Position - mRNA 214 -- 222@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 57 -- 63@LB@ |
177 |
0.02174 |
0.4127 |
b1725 |
yniA |
-12.81 |
0.028485 |
66 -- 113 |
12 -- 55 |
fructosamine kinase family protein |
|
_____________65__________________________________________________114\n_____________|___________________________________________________|\n5'-GAG...CGACC___G____G_____AAUAG______________UGGUU_____________UCAGU...GGC-3'\n______________UGG_A__G_AAUGG_____CAACAGAAAAUAAA_____UUUG_GGCAAUAA\n______________|||_|__|_|||||_____||||||||||||||_____|:||_|:||||||\n______________ACC_U__C_UUACC_____GUUGUCUUUUAUUU_____AGAC_CUGUUAUU\n3'-UUU...UAGUC___G_UA_G_____GG_________________U________A________UCCGU...UUG-5'\n_____________|___________________________________________________|\n_____________56__________________________________________________11\n |
107 -- 113 |
12 -- 18 |
-33.1768 kcal/mol |
9.27067 kcal/mol |
11.0975 kcal/mol |
65 114@LB@ | |@LB@5'-GAG...CGACC G G AAUAG UGGUU UCAGU...GGC-3'@LB@ UGG A G AAUGG CAACAGAAAAUAAA UUUG GGCAAUAA@LB@ ||| | | ||||| |||||||||||||| |:|| |:||||||@LB@ ACC U C UUACC GUUGUCUUUUAUUU AGAC CUGUUAUU@LB@3'-UUU...UAGUC G UA G GG U A UCCGU...UUG-5'@LB@ | |@LB@ 56 11@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -33.1768 kcal/mol@LB@Unfolding Energy - mRNA 9.27067 kcal/mol@LB@Unfolding Energy - sRNA 11.0975 kcal/mol@LB@@LB@Position - mRNA 66 -- 113@LB@Position - sRNA 12 -- 55@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 12 -- 18@LB@ |
138 |
0.01562 |
0.3807 |
b1735 |
chbR |
-9.56 |
0.149643 |
62 -- 73 |
41 -- 54 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________61_____________74\n_____________|______________|\n5'-GAU...UUGAA______________GAAGG...CUG-3'\n______________GGCGAUGCG__GGC\n______________|||:||||:__|||\n______________CCGUUACGU__CCG\n3'-UUU...AGUCA_________UA___GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
64 -- 70 |
46 -- 52 |
-18.6965 kcal/mol |
5.24959 kcal/mol |
3.89026 kcal/mol |
61 74@LB@ | |@LB@5'-GAU...UUGAA GAAGG...CUG-3'@LB@ GGCGAUGCG GGC@LB@ |||:||||: |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -18.6965 kcal/mol@LB@Unfolding Energy - mRNA 5.24959 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 62 -- 73@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 46 -- 52@LB@ |
148 |
0.01733 |
0.3828 |
b1760 |
ynjH |
-7.42 |
0.362448 |
2 -- 64 |
11 -- 71 |
DUF1496 family protein |
|
_____________1________________________________________________________________65\n_____________|________________________________________________________________|\n__________5'-U_______UUUAU____U___CUUU______U_______UAUACCAUCAAGAA____________CAAGA...AAG-3'\n______________UAUGUUG_____GUCA_GUG____UGCAGU__UUCGAC______________UGUGACGGUAAG\n______________|||||||_____:|||_|||____||||:|__::|:||______________||||||::|||:\n______________AUACAAC_____UAGU_CAC____ACGUUA__GGGUUG______________ACACUGUUAUUU\n3'-UUU...AAAAU_______CUUU_________CGUU______CC______UCUUUUAUUUUAG_____________CCGUA...UUG-5'\n_____________|________________________________________________________________|\n_____________72_______________________________________________________________10\n |
58 -- 64 |
11 -- 17 |
-35.6179 kcal/mol |
16.0903 kcal/mol |
12.1045 kcal/mol |
1 65@LB@ | |@LB@ 5'-U UUUAU U CUUU U UAUACCAUCAAGAA CAAGA...AAG-3'@LB@ UAUGUUG GUCA GUG UGCAGU UUCGAC UGUGACGGUAAG@LB@ ||||||| :||| ||| ||||:| ::|:|| ||||||::|||:@LB@ AUACAAC UAGU CAC ACGUUA GGGUUG ACACUGUUAUUU@LB@3'-UUU...AAAAU CUUU CGUU CC UCUUUUAUUUUAG CCGUA...UUG-5'@LB@ | |@LB@ 72 10@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -35.6179 kcal/mol@LB@Unfolding Energy - mRNA 16.0903 kcal/mol@LB@Unfolding Energy - sRNA 12.1045 kcal/mol@LB@@LB@Position - mRNA 2 -- 64@LB@Position - sRNA 11 -- 71@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 11 -- 17@LB@ |