| 39 |
0.002581 |
0.2088 |
b3991 |
thiG |
-13.93 |
0.014953 |
9 -- 37 |
40 -- 69 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________8_______________________________38\n_____________|_______________________________|\n___5'-GCAGAUCC____UAAC_____A_____________C___GCCGG...CCG-3'\n______________UGUU____GAUCA___GCGAUGCAGUG_GCC\n______________||||____:||||___||:|||||:||_|||\n______________ACAA____UUAGU___CGUUACGUUAC_CGG\n3'-UUU...AAUAU____CCUU_____CAC_______________GUUGU...UUG-5'\n_____________|_______________________________|\n_____________70______________________________39\n |
27 -- 33 |
43 -- 49 |
-27.0914 kcal/mol |
6.322 kcal/mol |
6.83756 kcal/mol |
8 38@LB@ | |@LB@ 5'-GCAGAUCC UAAC A C GCCGG...CCG-3'@LB@ UGUU GAUCA GCGAUGCAGUG GCC@LB@ |||| :|||| ||:|||||:|| |||@LB@ ACAA UUAGU CGUUACGUUAC CGG@LB@3'-UUU...AAUAU CCUU CAC GUUGU...UUG-5'@LB@ | |@LB@ 70 39@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -27.0914 kcal/mol@LB@Unfolding Energy - mRNA 6.322 kcal/mol@LB@Unfolding Energy - sRNA 6.83756 kcal/mol@LB@@LB@Position - mRNA 9 -- 37@LB@Position - sRNA 40 -- 69@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 7 |
0.0002249 |
0.1081 |
b4032 |
malG |
-16.06 |
0.003987 |
187 -- 221 |
31 -- 65 |
maltose transporter subunit |
|
_____________186_________________________________222\n_____________|___________________________________|\n5'-CGU...AUUAA_______AACAAAAAUG_____________C____UCGCA...UGG-3'\n______________GGGAGAU__________GCAAUGGUCCAAC_GAAA\n______________||:|:||__________|||||||:|||||_||||\n______________CCUUUUA__________CGUUACCGGGUUG_CUUU\n3'-UUU...UACAA_______GUCACCGUUA_____________U____UAUUU...UUG-5'\n_____________|___________________________________|\n_____________66__________________________________30\n |
210 -- 216 |
36 -- 42 |
-33.4232 kcal/mol |
6.39587 kcal/mol |
10.9697 kcal/mol |
186 222@LB@ | |@LB@5'-CGU...AUUAA AACAAAAAUG C UCGCA...UGG-3'@LB@ GGGAGAU GCAAUGGUCCAAC GAAA@LB@ ||:|:|| |||||||:||||| ||||@LB@ CCUUUUA CGUUACCGGGUUG CUUU@LB@3'-UUU...UACAA GUCACCGUUA U UAUUU...UUG-5'@LB@ | |@LB@ 66 30@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -33.4232 kcal/mol@LB@Unfolding Energy - mRNA 6.39587 kcal/mol@LB@Unfolding Energy - sRNA 10.9697 kcal/mol@LB@@LB@Position - mRNA 187 -- 221@LB@Position - sRNA 31 -- 65@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 103 |
0.009615 |
0.3118 |
b4045 |
yjbJ |
-8.83 |
0.207064 |
48 -- 67 |
39 -- 60 |
stress-induced protein UPF0337 family |
|
_____________47______________________68\n_____________|_______________________|\n5'-CGU...GCGGC____C_______________A__UGGUU...AAG-3'\n______________GUCA_UGGC___GCAAUGGU_CC\n______________:|||_||||___|||||||:_||\n______________UAGU_ACCG___CGUUACCG_GG\n3'-UUU...CCUUU____C____UUA___________UUGUC...UUG-5'\n_____________|_______________________|\n_____________61______________________38\n |
58 -- 64 |
41 -- 47 |
-22.6105 kcal/mol |
7.1744 kcal/mol |
6.61009 kcal/mol |
47 68@LB@ | |@LB@5'-CGU...GCGGC C A UGGUU...AAG-3'@LB@ GUCA UGGC GCAAUGGU CC@LB@ :||| |||| |||||||: ||@LB@ UAGU ACCG CGUUACCG GG@LB@3'-UUU...CCUUU C UUA UUGUC...UUG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -22.6105 kcal/mol@LB@Unfolding Energy - mRNA 7.1744 kcal/mol@LB@Unfolding Energy - sRNA 6.61009 kcal/mol@LB@@LB@Position - mRNA 48 -- 67@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 36 |
0.002273 |
0.2088 |
b4138 |
dcuA |
-11.14 |
0.069498 |
259 -- 284 |
41 -- 65 |
C4-dicarboxylate antiporter |
|
_____________258__________________________285\n_____________|____________________________|\n5'-AAC...AUUGG_______A___AUU___UU_________GGAUU...UGG-3'\n______________GGGGAAU_GGU___GGU__UGCA__GGC\n______________||::|||_:||___||:__||||__|||\n______________CCUUUUA_UCA___CCG__ACGU__CCG\n3'-UUU...UACAA_______G_________UU____UA___GGUUG...UUG-5'\n_____________|____________________________|\n_____________66___________________________40\n |
259 -- 265 |
59 -- 65 |
-20.3442 kcal/mol |
3.39574 kcal/mol |
5.80973 kcal/mol |
258 285@LB@ | |@LB@5'-AAC...AUUGG A AUU UU GGAUU...UGG-3'@LB@ GGGGAAU GGU GGU UGCA GGC@LB@ ||::||| :|| ||: |||| |||@LB@ CCUUUUA UCA CCG ACGU CCG@LB@3'-UUU...UACAA G UU UA GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -20.3442 kcal/mol@LB@Unfolding Energy - mRNA 3.39574 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 57 |
0.004077 |
0.237 |
b4198 |
ulaF |
-9.90 |
0.127727 |
21 -- 37 |
42 -- 55 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________20________________38\n_____________|_________________|\n5'-GUC...CCGUU_____AAG_________AUUUC...GCG-3'\n______________UGGCG___GUGUAGUGG\n______________||||:___:||:|:|||\n______________ACCGU___UACGUUACC\n3'-UUU...UAGUC_________________GGGUU...UUG-5'\n_____________|_________________|\n_____________56________________41\n |
31 -- 37 |
42 -- 48 |
-17.0201 kcal/mol |
3.6214 kcal/mol |
3.50097 kcal/mol |
20 38@LB@ | |@LB@5'-GUC...CCGUU AAG AUUUC...GCG-3'@LB@ UGGCG GUGUAGUGG@LB@ ||||: :||:|:|||@LB@ ACCGU UACGUUACC@LB@3'-UUU...UAGUC GGGUU...UUG-5'@LB@ | |@LB@ 56 41@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -17.0201 kcal/mol@LB@Unfolding Energy - mRNA 3.6214 kcal/mol@LB@Unfolding Energy - sRNA 3.50097 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 42 -- 55@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 4 |
6.145e-05 |
0.05167 |
b4217 |
ytfK |
-14.33 |
0.011783 |
150 -- 205 |
11 -- 68 |
DUF1107 family protein |
|
_____________149________________________________________________________________206\n_____________|__________________________________________________________________|\n5'-GAA...UAAUA______CC___________CC___CA___GUAAUAC______________________________AAUUU...AAU-3'\n______________GUUGGG__GAUU_GUGGCA__GCA__GGC_______UCAGCAGGAGAUA_________ACAAUGAA\n______________|||||:__:||:_||||||__|||__|||_______:||:|||:|:|||_________|||||:||\n______________CAACCU__UUAG_CACCGU__CGU__CCG_______GGUUGUCUUUUAU_________UGUUAUUU\n3'-UUU...AUAUA______U_____U______UA___UA_______________________UUUAGACAC________CCGUA...UUG-5'\n_____________|__________________________________________________________________|\n_____________69_________________________________________________________________10\n |
199 -- 205 |
11 -- 17 |
-43.2853 kcal/mol |
16.8726 kcal/mol |
12.0809 kcal/mol |
149 206@LB@ | |@LB@5'-GAA...UAAUA CC CC CA GUAAUAC AAUUU...AAU-3'@LB@ GUUGGG GAUU GUGGCA GCA GGC UCAGCAGGAGAUA ACAAUGAA@LB@ |||||: :||: |||||| ||| ||| :||:|||:|:||| |||||:||@LB@ CAACCU UUAG CACCGU CGU CCG GGUUGUCUUUUAU UGUUAUUU@LB@3'-UUU...AUAUA U U UA UA UUUAGACAC CCGUA...UUG-5'@LB@ | |@LB@ 69 10@LB@@LB@@LB@Energy -14.33 kcal/mol@LB@Hybridization Energy -43.2853 kcal/mol@LB@Unfolding Energy - mRNA 16.8726 kcal/mol@LB@Unfolding Energy - sRNA 12.0809 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 11 -- 68@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 3 |
3.498e-05 |
0.03921 |
b4255 |
rraB |
-13.36 |
0.020838 |
142 -- 156 |
41 -- 54 |
protein inhibitor of RNase E |
|
_____________141_____________157\n_____________|_______________|\n5'-GAG...GUGGA_______U_______GUGUG...CCA-3'\n______________GGCAAUG_CAGUGGU\n______________|||||||_||:|||:\n______________CCGUUAC_GUUACCG\n3'-UUU...AGUCA_______________GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
150 -- 156 |
41 -- 47 |
-21.65 kcal/mol |
4.39843 kcal/mol |
3.89026 kcal/mol |
141 157@LB@ | |@LB@5'-GAG...GUGGA U GUGUG...CCA-3'@LB@ GGCAAUG CAGUGGU@LB@ ||||||| ||:|||:@LB@ CCGUUAC GUUACCG@LB@3'-UUU...AGUCA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -21.65 kcal/mol@LB@Unfolding Energy - mRNA 4.39843 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 142 -- 156@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 49 |
0.003464 |
0.237 |
b4260 |
pepA |
-9.32 |
0.166975 |
186 -- 204 |
42 -- 59 |
multifunctional aminopeptidase A: a cyteinylglycinase transcription regulator and site-specific recombination factor |
|
_____________185__________________205\n_____________|____________________|\n5'-UUA...AAGAU____GA_C____________AGUUU...AAC-3'\n______________UCAG__G_GUAGUGCA_UGG\n______________||||__|_|:|:||||_|||\n______________AGUC__C_CGUUACGU_ACC\n3'-UUU...CUUUU____A___________U___GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
195 -- 201 |
46 -- 52 |
-17.4947 kcal/mol |
4.48384 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-UUA...AAGAU GA C AGUUU...AAC-3'@LB@ UCAG G GUAGUGCA UGG@LB@ |||| | |:|:|||| |||@LB@ AGUC C CGUUACGU ACC@LB@3'-UUU...CUUUU A U GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -17.4947 kcal/mol@LB@Unfolding Energy - mRNA 4.48384 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 119 |
0.01177 |
0.3326 |
b4262 |
lptG |
-9.06 |
0.186805 |
47 -- 70 |
7 -- 29 |
lipopolysaccharide export ABC permease |
|
_____________46_______________________71\n_____________|________________________|\n5'-CCA...CUCCC_______GAAC_____________AGCUG...UCA-3'\n______________UGAAAUC____GGCGGUAAAGGUA\n______________|:|||||____|:|::||||||:|\n______________AUUUUAG____CUGUUAUUUCCGU\n3'-UUU...CUUUU_______ACA______________AUAUUG-5'\n_____________|________________________|\n_____________30_______________________6\n |
64 -- 70 |
7 -- 13 |
-21.2282 kcal/mol |
7.28231 kcal/mol |
4.88318 kcal/mol |
46 71@LB@ | |@LB@5'-CCA...CUCCC GAAC AGCUG...UCA-3'@LB@ UGAAAUC GGCGGUAAAGGUA@LB@ |:||||| |:|::||||||:|@LB@ AUUUUAG CUGUUAUUUCCGU@LB@3'-UUU...CUUUU ACA AUAUUG-5'@LB@ | |@LB@ 30 6@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -21.2282 kcal/mol@LB@Unfolding Energy - mRNA 7.28231 kcal/mol@LB@Unfolding Energy - sRNA 4.88318 kcal/mol@LB@@LB@Position - mRNA 47 -- 70@LB@Position - sRNA 7 -- 29@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 7 -- 13@LB@ |
