| 137 |
0.01537 |
0.3774 |
b0952 |
pqiC |
-8.31 |
0.257066 |
203 -- 237 |
17 -- 64 |
DUF330 family putative lipoprotein |
|
_____________202________________________________________________238\n_____________|__________________________________________________|\n5'-ACG...ACAAU_____________U____A_______G_______________________UGGCC...GCG-3'\n______________GAAAA__AGUGGC_AGUG_CGAU__U_CAGCA___________CUGUGGC\n______________|||||__||||||_|:||_|:||__:_||:||___________|||||:|\n______________CUUUU__UCACCG_UUAC_GUUA__G_GUUGU___________GACACUG\n3'-UUU...ACAAC_____AG________________CC_G_____CUUUUAUUUUA_______UUAUU...UUG-5'\n_____________|__________________________________________________|\n_____________65_________________________________________________16\n |
231 -- 237 |
17 -- 23 |
-29.1693 kcal/mol |
9.7543 kcal/mol |
11.1047 kcal/mol |
202 238@LB@ | |@LB@5'-ACG...ACAAU U A G UGGCC...GCG-3'@LB@ GAAAA AGUGGC AGUG CGAU U CAGCA CUGUGGC@LB@ ||||| |||||| |:|| |:|| : ||:|| |||||:|@LB@ CUUUU UCACCG UUAC GUUA G GUUGU GACACUG@LB@3'-UUU...ACAAC AG CC G CUUUUAUUUUA UUAUU...UUG-5'@LB@ | |@LB@ 65 16@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -29.1693 kcal/mol@LB@Unfolding Energy - mRNA 9.7543 kcal/mol@LB@Unfolding Energy - sRNA 11.1047 kcal/mol@LB@@LB@Position - mRNA 203 -- 237@LB@Position - sRNA 17 -- 64@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 62 |
0.004714 |
0.2539 |
b0973 |
hyaB |
-9.08 |
0.185506 |
169 -- 187 |
48 -- 64 |
hydrogenase 1 large subunit |
|
_____________168_________________188\n_____________|___________________|\n5'-GGU...AAACC___C_____CCA_______AGGAU...GCG-3'\n______________GAA_AUCAG___GGCAAUG\n______________|||_|||||___|||||||\n______________CUU_UAGUC___CCGUUAC\n3'-UUU...ACAAC___U_____A_________GUUAC...UUG-5'\n_____________|___________________|\n_____________65__________________47\n |
181 -- 187 |
48 -- 54 |
-17.0784 kcal/mol |
4.02672 kcal/mol |
3.97302 kcal/mol |
168 188@LB@ | |@LB@5'-GGU...AAACC C CCA AGGAU...GCG-3'@LB@ GAA AUCAG GGCAAUG@LB@ ||| ||||| |||||||@LB@ CUU UAGUC CCGUUAC@LB@3'-UUU...ACAAC U A GUUAC...UUG-5'@LB@ | |@LB@ 65 47@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -17.0784 kcal/mol@LB@Unfolding Energy - mRNA 4.02672 kcal/mol@LB@Unfolding Energy - sRNA 3.97302 kcal/mol@LB@@LB@Position - mRNA 169 -- 187@LB@Position - sRNA 48 -- 64@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 200 |
0.0254 |
0.4256 |
b0975 |
hyaD |
-14.05 |
0.013908 |
10 -- 31 |
42 -- 66 |
hydrogenase 1 maturation protease |
|
_____________9_________________________32\n_____________|_________________________|\n5'-UUU...UCUAC____CG___________CU______ACAUU...ACC-3'\n______________UGGA_____GGUGGCAA__CAAUGG\n______________||||_____:|||||||__||||||\n______________ACCU_____UCACCGUU__GUUACC\n3'-UUU...AUACA____UUUAG________AC______GGGUU...UUG-5'\n_____________|_________________________|\n_____________67________________________41\n |
17 -- 23 |
50 -- 56 |
-23.7385 kcal/mol |
4.08533 kcal/mol |
5.59884 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...UCUAC CG CU ACAUU...ACC-3'@LB@ UGGA GGUGGCAA CAAUGG@LB@ |||| :||||||| ||||||@LB@ ACCU UCACCGUU GUUACC@LB@3'-UUU...AUACA UUUAG AC GGGUU...UUG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -23.7385 kcal/mol@LB@Unfolding Energy - mRNA 4.08533 kcal/mol@LB@Unfolding Energy - sRNA 5.59884 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 58 |
0.004088 |
0.237 |
b0998 |
torD |
-12.26 |
0.038501 |
93 -- 144 |
1 -- 57 |
TorA-maturation chaperone |
|
_____________92__________________________________________________________145\n_____________|___________________________________________________________|\n5'-GGU...ACGCU_____AAAU__AGAA___A________C_______CAG________________U____GGCCC...CCA-3'\n______________GGUGG____UG_____GU_CAACGGAA_AGUGGAG___GUGAC______GGCGU_UAAC\n______________:||||____||_____|:_||||:|||_|:|::|:___|||||______|||:|_||||\n______________UCACC____AC_____CG_GUUGUCUU_UUAUUUU___CACUG______CCGUA_AUUG\n3'-UUU...UUUAG_____GUU___GUUAC__G________________AGA_____UUAUUU_____U____-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________1\n |
111 -- 117 |
33 -- 39 |
-35.8821 kcal/mol |
11.4978 kcal/mol |
12.1233 kcal/mol |
92 145@LB@ | |@LB@5'-GGU...ACGCU AAAU AGAA A C CAG U GGCCC...CCA-3'@LB@ GGUGG UG GU CAACGGAA AGUGGAG GUGAC GGCGU UAAC@LB@ :|||| || |: ||||:||| |:|::|: ||||| |||:| ||||@LB@ UCACC AC CG GUUGUCUU UUAUUUU CACUG CCGUA AUUG@LB@3'-UUU...UUUAG GUU GUUAC G AGA UUAUUU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -35.8821 kcal/mol@LB@Unfolding Energy - mRNA 11.4978 kcal/mol@LB@Unfolding Energy - sRNA 12.1233 kcal/mol@LB@@LB@Position - mRNA 93 -- 144@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 172 |
0.02065 |
0.4033 |
b1015 |
putP |
-10.70 |
0.086688 |
188 -- 205 |
52 -- 67 |
proline:sodium symporter |
|
_____________187________________206\n_____________|__________________|\n5'-AGA...AUUUU_______CU____A____UAUUA...ACG-3'\n______________UUGGAGA__UUAG_UGGC\n______________|||||:|__|:||_||||\n______________AACCUUU__AGUC_ACCG\n3'-UUU...UAUAC_______U__________UUACG...UUG-5'\n_____________|__________________|\n_____________68_________________51\n |
188 -- 194 |
61 -- 67 |
-15.9795 kcal/mol |
2.37428 kcal/mol |
2.90583 kcal/mol |
187 206@LB@ | |@LB@5'-AGA...AUUUU CU A UAUUA...ACG-3'@LB@ UUGGAGA UUAG UGGC@LB@ |||||:| |:|| ||||@LB@ AACCUUU AGUC ACCG@LB@3'-UUU...UAUAC U UUACG...UUG-5'@LB@ | |@LB@ 68 51@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -15.9795 kcal/mol@LB@Unfolding Energy - mRNA 2.37428 kcal/mol@LB@Unfolding Energy - sRNA 2.90583 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 52 -- 67@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 72 |
0.005975 |
0.2791 |
b1062 |
pyrC |
-13.01 |
0.025478 |
15 -- 31 |
41 -- 58 |
dihydro-orotase |
|
_____________14_________________32\n_____________|__________________|\n5'-GCG...GCAGC_________A________GAAAA...CCA-3'\n______________CAG_GGCGA_GCAAUGGC\n______________|||_|||:|_||||||||\n______________GUC_CCGUU_CGUUACCG\n3'-UUU...UUUUA___A_____A________GGUUG...UUG-5'\n_____________|__________________|\n_____________59_________________40\n |
25 -- 31 |
41 -- 47 |
-24.8377 kcal/mol |
7.56192 kcal/mol |
4.26806 kcal/mol |
14 32@LB@ | |@LB@5'-GCG...GCAGC A GAAAA...CCA-3'@LB@ CAG GGCGA GCAAUGGC@LB@ ||| |||:| ||||||||@LB@ GUC CCGUU CGUUACCG@LB@3'-UUU...UUUUA A A GGUUG...UUG-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -24.8377 kcal/mol@LB@Unfolding Energy - mRNA 7.56192 kcal/mol@LB@Unfolding Energy - sRNA 4.26806 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 117 |
0.01164 |
0.3326 |
b1119 |
nagK |
-13.64 |
0.017780 |
246 -- 275 |
42 -- 70 |
N-acetyl-D-glucosamine kinase |
|
_____________245_____________________________276\n_____________|_______________________________|\n5'-UCA...UUGGC_____U__UAG_____C_____U________GAAAA...GUG-3'\n______________GUGUU_GA____CGGU_GGCAG_UGCAGUGG\n______________:||||_||____|:||_||||:_||||:|||\n______________UACAA_CU____GUCA_CCGUU_ACGUUACC\n3'-UUU...AAAUA_____C__UUUA___________________GGGUU...UUG-5'\n_____________|_______________________________|\n_____________71______________________________41\n |
269 -- 275 |
42 -- 48 |
-28.344 kcal/mol |
8.3584 kcal/mol |
6.34928 kcal/mol |
245 276@LB@ | |@LB@5'-UCA...UUGGC U UAG C U GAAAA...GUG-3'@LB@ GUGUU GA CGGU GGCAG UGCAGUGG@LB@ :|||| || |:|| ||||: ||||:|||@LB@ UACAA CU GUCA CCGUU ACGUUACC@LB@3'-UUU...AAAUA C UUUA GGGUU...UUG-5'@LB@ | |@LB@ 71 41@LB@@LB@@LB@Energy -13.64 kcal/mol@LB@Hybridization Energy -28.344 kcal/mol@LB@Unfolding Energy - mRNA 8.3584 kcal/mol@LB@Unfolding Energy - sRNA 6.34928 kcal/mol@LB@@LB@Position - mRNA 246 -- 275@LB@Position - sRNA 42 -- 70@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 111 |
0.01033 |
0.313 |
b1120 |
cobB |
-14.51 |
0.010573 |
178 -- 236 |
7 -- 64 |
deacetylase of acs and cheY chemotaxis regulator |
|
_____________177______________________________________________________________237\n_____________|________________________________________________________________|\n5'-CGC...UUUCA____UAA______GCCG__A_______AAA___CA______C____GUAC______________GGAAU...AUC-3'\n______________GAGA___AGUGGU____GA_GCAAUGG___AAC__AGAGUA___UC____UGACAG___GGGCA\n______________||:|___|||||:____:|_|||||||___|||__|:|:||___||____|||||:___:||||\n______________CUUU___UCACCG____UU_CGUUACC___UUG__UUUUAU___AG____ACUGUU___UCCGU\n3'-UUU...ACAAC____UAG____________A_______GGG___UC______UUU__AC________AUU_____AUAUUG-5'\n_____________|________________________________________________________________|\n_____________65_______________________________________________________________6\n |
198 -- 204 |
42 -- 48 |
-37.7371 kcal/mol |
11.0723 kcal/mol |
12.1536 kcal/mol |
177 237@LB@ | |@LB@5'-CGC...UUUCA UAA GCCG A AAA CA C GUAC GGAAU...AUC-3'@LB@ GAGA AGUGGU GA GCAAUGG AAC AGAGUA UC UGACAG GGGCA@LB@ ||:| |||||: :| ||||||| ||| |:|:|| || |||||: :||||@LB@ CUUU UCACCG UU CGUUACC UUG UUUUAU AG ACUGUU UCCGU@LB@3'-UUU...ACAAC UAG A GGG UC UUU AC AUU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -37.7371 kcal/mol@LB@Unfolding Energy - mRNA 11.0723 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 178 -- 236@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 193 |
0.02433 |
0.4239 |
b1125 |
potB |
-7.71 |
0.326143 |
48 -- 60 |
50 -- 66 |
spermidine/putrescine ABC transporter permease |
|
_____________47________________61\n_____________|_________________|\n5'-UCG...UGAAC_________________GAUGG...UUG-3'\n______________UGGAAAA____UGGCAA\n______________|||||||____||||||\n______________ACCUUUU____ACCGUU\n3'-UUU...AUACA_______AGUC______ACGUU...UUG-5'\n_____________|_________________|\n_____________67________________49\n |
48 -- 54 |
60 -- 66 |
-13.9172 kcal/mol |
3.09187 kcal/mol |
3.11877 kcal/mol |
47 61@LB@ | |@LB@5'-UCG...UGAAC GAUGG...UUG-3'@LB@ UGGAAAA UGGCAA@LB@ ||||||| ||||||@LB@ ACCUUUU ACCGUU@LB@3'-UUU...AUACA AGUC ACGUU...UUG-5'@LB@ | |@LB@ 67 49@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -13.9172 kcal/mol@LB@Unfolding Energy - mRNA 3.09187 kcal/mol@LB@Unfolding Energy - sRNA 3.11877 kcal/mol@LB@@LB@Position - mRNA 48 -- 60@LB@Position - sRNA 50 -- 66@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 19 |
0.0008126 |
0.1438 |
b1205 |
ychH |
-14.60 |
0.010030 |
245 -- 269 |
40 -- 68 |
DUF2583 family putative inner membrane protein |
|
_____________244____________________________270\n_____________|______________________________|\n5'-CAA...AUGGG___________U__________________GGCGU...UAC-3'\n______________GUUGG___GUC_GGUGGUAAUG__GUGGUC\n______________|||||___:||_:||||:||||__:|||:|\n______________CAACC___UAG_UCACCGUUAC__UACCGG\n3'-UUU...AUAUA_____UUU______________GU______GUUGU...UUG-5'\n_____________|______________________________|\n_____________69_____________________________39\n |
257 -- 263 |
48 -- 54 |
-27.4871 kcal/mol |
6.07036 kcal/mol |
6.81885 kcal/mol |
244 270@LB@ | |@LB@5'-CAA...AUGGG U GGCGU...UAC-3'@LB@ GUUGG GUC GGUGGUAAUG GUGGUC@LB@ ||||| :|| :||||:|||| :|||:|@LB@ CAACC UAG UCACCGUUAC UACCGG@LB@3'-UUU...AUAUA UUU GU GUUGU...UUG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -27.4871 kcal/mol@LB@Unfolding Energy - mRNA 6.07036 kcal/mol@LB@Unfolding Energy - sRNA 6.81885 kcal/mol@LB@@LB@Position - mRNA 245 -- 269@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 48 -- 54@LB@ |
