| 126 |
0.01341 |
0.3578 |
b3572 |
avtA |
-7.69 |
0.327921 |
259 -- 267 |
58 -- 66 |
valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase |
|
_____________258_______268\n_____________|_________|\n5'-UCG...GUUGA_________UGAAC...UUA-3'\n______________UGGAAGAUC\n______________|||||:|||\n______________ACCUUUUAG\n3'-UUU...AUACA_________UCACC...UUG-5'\n_____________|_________|\n_____________67________57\n |
261 -- 267 |
58 -- 64 |
-10.9576 kcal/mol |
2.42155 kcal/mol |
0.843879 kcal/mol |
258 268@LB@ | |@LB@5'-UCG...GUUGA UGAAC...UUA-3'@LB@ UGGAAGAUC@LB@ |||||:|||@LB@ ACCUUUUAG@LB@3'-UUU...AUACA UCACC...UUG-5'@LB@ | |@LB@ 67 57@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.9576 kcal/mol@LB@Unfolding Energy - mRNA 2.42155 kcal/mol@LB@Unfolding Energy - sRNA 0.843879 kcal/mol@LB@@LB@Position - mRNA 259 -- 267@LB@Position - sRNA 58 -- 66@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 30 |
0.001842 |
0.2065 |
b3574 |
yiaJ |
-8.97 |
0.194276 |
228 -- 279 |
20 -- 64 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________227_____________________________________________________280\n_____________|_______________________________________________________|\n5'-CCC...AAAAA_____CG__A___________GAAAAAGAGC______C______CC_________UUCGC...UUG-3'\n______________GAGAA__AG_UGGC___GCAG__________GUCCAG_CGGAAG__AGAGUCUGU\n______________||:||__||_||||___|||:__________|:|||:_|:|||:__|:|:|||||\n______________CUUUU__UC_ACCG___CGUU__________CGGGUU_GUCUUU__UUUUAGACA\n3'-UUU...ACAAC_____AG_______UUA____AC_____________________UA_________CUGUU...UUG-5'\n_____________|_______________________________________________________|\n_____________65______________________________________________________19\n |
273 -- 279 |
20 -- 26 |
-33.3994 kcal/mol |
13.3805 kcal/mol |
11.0456 kcal/mol |
227 280@LB@ | |@LB@5'-CCC...AAAAA CG A GAAAAAGAGC C CC UUCGC...UUG-3'@LB@ GAGAA AG UGGC GCAG GUCCAG CGGAAG AGAGUCUGU@LB@ ||:|| || |||| |||: |:|||: |:|||: |:|:|||||@LB@ CUUUU UC ACCG CGUU CGGGUU GUCUUU UUUUAGACA@LB@3'-UUU...ACAAC AG UUA AC UA CUGUU...UUG-5'@LB@ | |@LB@ 65 19@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -33.3994 kcal/mol@LB@Unfolding Energy - mRNA 13.3805 kcal/mol@LB@Unfolding Energy - sRNA 11.0456 kcal/mol@LB@@LB@Position - mRNA 228 -- 279@LB@Position - sRNA 20 -- 64@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 118 |
0.01176 |
0.3326 |
b3601 |
mtlR |
-9.20 |
0.175568 |
190 -- 199 |
44 -- 53 |
mannitol operon repressor |
|
_____________189________200\n_____________|__________|\n5'-UAU...AUAAA__________AAUGG...UUG-3'\n______________GCAAUGCAAU\n______________||||||||||\n______________CGUUACGUUA\n3'-UUU...GUCAC__________CCGGG...UUG-5'\n_____________|__________|\n_____________54_________43\n |
193 -- 199 |
44 -- 50 |
-14.2394 kcal/mol |
1.82821 kcal/mol |
3.20822 kcal/mol |
189 200@LB@ | |@LB@5'-UAU...AUAAA AAUGG...UUG-3'@LB@ GCAAUGCAAU@LB@ ||||||||||@LB@ CGUUACGUUA@LB@3'-UUU...GUCAC CCGGG...UUG-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -14.2394 kcal/mol@LB@Unfolding Energy - mRNA 1.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.20822 kcal/mol@LB@@LB@Position - mRNA 190 -- 199@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 22 |
0.001182 |
0.1807 |
b3642 |
pyrE |
-13.24 |
0.022299 |
74 -- 119 |
8 -- 48 |
orotate phosphoribosyltransferase |
|
_____________73______________________________________________120\n_____________|_______________________________________________|\n5'-CGG...UGUUG__UC________G_____UC______CAU___AGC____CA______GGCGC...AUU-3'\n______________GC__UGGCCCGA_GGGAA___GAAUC___UGU___GACG__GAAGGC\n______________||__||||||:|_:|:||___:||||___|||___|||:__:|||||\n______________CG__ACCGGGUU_UCUUU___UUUAG___ACA___CUGU__UUUCCG\n3'-UUU...CGUUA__UU________G_____UAU__________________UA______UAUAUUG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
79 -- 85 |
37 -- 43 |
-37.0606 kcal/mol |
11.836 kcal/mol |
11.9819 kcal/mol |
73 120@LB@ | |@LB@5'-CGG...UGUUG UC G UC CAU AGC CA GGCGC...AUU-3'@LB@ GC UGGCCCGA GGGAA GAAUC UGU GACG GAAGGC@LB@ || ||||||:| :|:|| :|||| ||| |||: :|||||@LB@ CG ACCGGGUU UCUUU UUUAG ACA CUGU UUUCCG@LB@3'-UUU...CGUUA UU G UAU UA UAUAUUG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -37.0606 kcal/mol@LB@Unfolding Energy - mRNA 11.836 kcal/mol@LB@Unfolding Energy - sRNA 11.9819 kcal/mol@LB@@LB@Position - mRNA 74 -- 119@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 29 |
0.001819 |
0.2065 |
b3648 |
gmk |
-8.89 |
0.201842 |
236 -- 243 |
51 -- 58 |
guanylate kinase |
|
_____________235______244\n_____________|________|\n5'-GUG...GCCCC________CGGGU...CCC-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
237 -- 243 |
51 -- 57 |
-13.8917 kcal/mol |
2.3096 kcal/mol |
2.69685 kcal/mol |
235 244@LB@ | |@LB@5'-GUG...GCCCC CGGGU...CCC-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -13.8917 kcal/mol@LB@Unfolding Energy - mRNA 2.3096 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 236 -- 243@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 157 |
0.01802 |
0.3828 |
b3693 |
dgoK |
-7.47 |
0.356536 |
125 -- 141 |
46 -- 60 |
2-oxo-3-deoxygalactonate kinase |
|
_____________124_______________142\n_____________|_________________|\n5'-CAG...ACGAC_____GAC_________GCAGA...CAG-3'\n______________AUCAG___GGCGAUGCG\n______________|||||___|||:||||:\n______________UAGUC___CCGUUACGU\n3'-UUU...CCUUU_____A___________UACCG...UUG-5'\n_____________|_________________|\n_____________61________________45\n |
134 -- 140 |
47 -- 53 |
-18.5317 kcal/mol |
7.63037 kcal/mol |
3.43341 kcal/mol |
124 142@LB@ | |@LB@5'-CAG...ACGAC GAC GCAGA...CAG-3'@LB@ AUCAG GGCGAUGCG@LB@ ||||| |||:||||:@LB@ UAGUC CCGUUACGU@LB@3'-UUU...CCUUU A UACCG...UUG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.5317 kcal/mol@LB@Unfolding Energy - mRNA 7.63037 kcal/mol@LB@Unfolding Energy - sRNA 3.43341 kcal/mol@LB@@LB@Position - mRNA 125 -- 141@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 50 |
0.003719 |
0.237 |
b3705 |
yidC |
-9.36 |
0.163545 |
61 -- 100 |
7 -- 65 |
membrane protein insertase |
|
_____________60__________________________________________________________101\n_____________|___________________________________________________________|\n5'-CGC...GCUAC____UU____A____U____CA_____________________________________GUUGG...CCC-3'\n______________GGAA_____G_GGCA_UGCG__GGUUU___GGA___________GUGAUA__AAAGGCA\n______________||||_____|_||||_|||:__||:::___:||___________||||:|__|||||||\n______________CCUU_____C_CCGU_ACGU__CCGGG___UCU___________CACUGU__UUUCCGU\n3'-UUU...UACAA____UUAGU_A____U____UA_____UUG___UUUAUUUUAGA______UA_______AUAUUG-5'\n_____________|___________________________________________________________|\n_____________66__________________________________________________________6\n |
94 -- 100 |
7 -- 13 |
-30.9326 kcal/mol |
9.41756 kcal/mol |
12.1538 kcal/mol |
60 101@LB@ | |@LB@5'-CGC...GCUAC UU A U CA GUUGG...CCC-3'@LB@ GGAA G GGCA UGCG GGUUU GGA GUGAUA AAAGGCA@LB@ |||| | |||| |||: ||::: :|| ||||:| |||||||@LB@ CCUU C CCGU ACGU CCGGG UCU CACUGU UUUCCGU@LB@3'-UUU...UACAA UUAGU A U UA UUG UUUAUUUUAGA UA AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -30.9326 kcal/mol@LB@Unfolding Energy - mRNA 9.41756 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 61 -- 100@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 61 |
0.004706 |
0.2539 |
b3713 |
chrR |
-11.93 |
0.045896 |
122 -- 163 |
8 -- 58 |
chromate reductase Class I flavoprotein |
|
_____________121____________________________________________________164\n_____________|______________________________________________________|\n5'-ACG...CCUAC___CC__A_______UUUU_____________________CU___C________UUUUU...CGA-3'\n______________CAG__GG_UGAUGCG____GCCCAAC___________UCU___AC_GUGAAGGC\n______________|||__||_::||||:____|||||||___________|||___||_:|:|||||\n______________GUC__CC_GUUACGU____CGGGUUG___________AGA___UG_UAUUUCCG\n3'-UUU...UUUUA___A___________UAC________UCUUUUAUUUU___CAC__U________UAUAUUG-5'\n_____________|______________________________________________________|\n_____________59_____________________________________________________7\n |
157 -- 163 |
8 -- 14 |
-33.8478 kcal/mol |
9.79541 kcal/mol |
12.1181 kcal/mol |
121 164@LB@ | |@LB@5'-ACG...CCUAC CC A UUUU CU C UUUUU...CGA-3'@LB@ CAG GG UGAUGCG GCCCAAC UCU AC GUGAAGGC@LB@ ||| || ::||||: ||||||| ||| || :|:|||||@LB@ GUC CC GUUACGU CGGGUUG AGA UG UAUUUCCG@LB@3'-UUU...UUUUA A UAC UCUUUUAUUUU CAC U UAUAUUG-5'@LB@ | |@LB@ 59 7@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -33.8478 kcal/mol@LB@Unfolding Energy - mRNA 9.79541 kcal/mol@LB@Unfolding Energy - sRNA 12.1181 kcal/mol@LB@@LB@Position - mRNA 122 -- 163@LB@Position - sRNA 8 -- 58@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 15 |
0.0005657 |
0.1268 |
b3715 |
yieH |
-7.91 |
0.301098 |
195 -- 204 |
4 -- 13 |
phosphoenolpyruvate and 6-phosphogluconate phosphatase |
|
_____________194________205\n_____________|__________|\n5'-CUG...AAAGG__________CCCGG...UUG-3'\n______________AAAGGCAUGU\n______________||||||||:|\n______________UUUCCGUAUA\n3'-UUU...UGUUA__________UUG-5'\n_____________|__________|\n_____________14_________3\n |
198 -- 204 |
4 -- 10 |
-12.382 kcal/mol |
1.66065 kcal/mol |
2.80714 kcal/mol |
194 205@LB@ | |@LB@5'-CUG...AAAGG CCCGG...UUG-3'@LB@ AAAGGCAUGU@LB@ ||||||||:|@LB@ UUUCCGUAUA@LB@3'-UUU...UGUUA UUG-5'@LB@ | |@LB@ 14 3@LB@@LB@@LB@Energy -7.91 kcal/mol@LB@Hybridization Energy -12.382 kcal/mol@LB@Unfolding Energy - mRNA 1.66065 kcal/mol@LB@Unfolding Energy - sRNA 2.80714 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 4 -- 13@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 144 |
0.01658 |
0.3828 |
b3731 |
atpC |
-9.12 |
0.181998 |
70 -- 89 |
6 -- 25 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________69___________________90\n_____________|____________________|\n5'-UCC...ACACC___C_____UU_________CAUGG...UGG-3'\n______________AUC_GUGGC__UAAAGGCAU\n______________|||_|||:|__|||||||||\n______________UAG_CACUG__AUUUCCGUA\n3'-UUU...UAUUU___A_____UU_________UAUUG-5'\n_____________|____________________|\n_____________26___________________5\n |
83 -- 89 |
6 -- 12 |
-21.8685 kcal/mol |
8.00712 kcal/mol |
4.73944 kcal/mol |
69 90@LB@ | |@LB@5'-UCC...ACACC C UU CAUGG...UGG-3'@LB@ AUC GUGGC UAAAGGCAU@LB@ ||| |||:| |||||||||@LB@ UAG CACUG AUUUCCGUA@LB@3'-UUU...UAUUU A UU UAUUG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.8685 kcal/mol@LB@Unfolding Energy - mRNA 8.00712 kcal/mol@LB@Unfolding Energy - sRNA 4.73944 kcal/mol@LB@@LB@Position - mRNA 70 -- 89@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 6 -- 12@LB@ |
