25 |
0.0002052 |
0.02687 |
b0885 |
aat |
-14.70 |
0.000956 |
173 -- 191 |
42 -- 59 |
leucyl/phenylalanyl-tRNA-protein transferase |
|
_____________172_________________192\n_____________|___________________|\n5'-CGU...UGAAC_______C___________UUUGC...UUA-3'\n______________GAUCCGA_UUGCGUGGAGU\n______________:||||||_||:||||:|||\n______________UUAGGCU_AAUGCACUUCA\n3'-AUU...UCGGU___________________UUUUC...AUG-5'\n_____________|___________________|\n_____________60__________________41\n |
185 -- 191 |
42 -- 48 |
-23.9715 kcal/mol |
6.00825 kcal/mol |
3.27976 kcal/mol |
172 192@LB@ | |@LB@5'-CGU...UGAAC C UUUGC...UUA-3'@LB@ GAUCCGA UUGCGUGGAGU@LB@ :|||||| ||:||||:|||@LB@ UUAGGCU AAUGCACUUCA@LB@3'-AUU...UCGGU UUUUC...AUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -23.9715 kcal/mol@LB@Unfolding Energy - mRNA 6.00825 kcal/mol@LB@Unfolding Energy - sRNA 3.27976 kcal/mol@LB@@LB@Position - mRNA 173 -- 191@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
29 |
0.0002348 |
0.02849 |
b4015 |
aceA |
-10.12 |
0.041760 |
186 -- 214 |
1 -- 27 |
isocitrate lyase |
|
_____________185____________________________215\n_____________|______________________________|\n5'-UUG...UAACU______________ACA__AAA____G___ACAAC...UGA-3'\n______________AUGGAGCAUCU_GC___UG___ACCC_UAC\n______________||:||:|||||_:|___||___||||_|||\n______________UAUCUUGUAGA_UG___AC___UGGG_AUG\n3'-AUU...CUUUC___________A__GAG__A__________-5'\n_____________|_____________________________|\n_____________28____________________________1\n |
190 -- 196 |
17 -- 23 |
-23.282 kcal/mol |
5.13768 kcal/mol |
8.046 kcal/mol |
185 215@LB@ | |@LB@5'-UUG...UAACU ACA AAA G ACAAC...UGA-3'@LB@ AUGGAGCAUCU GC UG ACCC UAC@LB@ ||:||:||||| :| || |||| |||@LB@ UAUCUUGUAGA UG AC UGGG AUG@LB@3'-AUU...CUUUC A GAG A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -23.282 kcal/mol@LB@Unfolding Energy - mRNA 5.13768 kcal/mol@LB@Unfolding Energy - sRNA 8.046 kcal/mol@LB@@LB@Position - mRNA 186 -- 214@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 17 -- 23@LB@ |
85 |
0.002234 |
0.09158 |
b0118 |
acnB |
-9.43 |
0.065848 |
121 -- 128 |
1 -- 8 |
aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase |
|
_____________120______129\n_____________|________|\n5'-GAG...GCAUU________AAACU...UGC-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
122 -- 128 |
1 -- 7 |
-13.4001 kcal/mol |
1.87598 kcal/mol |
2.11603 kcal/mol |
120 129@LB@ | |@LB@5'-GAG...GCAUU AAACU...UGC-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.4001 kcal/mol@LB@Unfolding Energy - mRNA 1.87598 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 121 -- 128@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 1 -- 7@LB@ |
74 |
0.001232 |
0.05856 |
b3139 |
agaC |
-9.25 |
0.073815 |
213 -- 219 |
1 -- 7 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________212_____220\n_____________|_______|\n5'-AAC...AAAUA_______UUCAG...CGA-3'\n______________ACCCUAC\n______________|||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
213 -- 219 |
1 -- 7 |
-11.8132 kcal/mol |
0.545455 kcal/mol |
2.03949 kcal/mol |
212 220@LB@ | |@LB@5'-AAC...AAAUA UUCAG...CGA-3'@LB@ ACCCUAC@LB@ |||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -11.8132 kcal/mol@LB@Unfolding Energy - mRNA 0.545455 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 213 -- 219@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 1 -- 7@LB@ |
31 |
0.0003178 |
0.03519 |
b3588 |
aldB |
-11.98 |
0.010708 |
83 -- 100 |
1 -- 16 |
aldehyde dehydrogenase B |
|
_____________82_________________101\n_____________|__________________|\n5'-GAA...UCAAC__________A___U___CCGUA...GGG-3'\n______________UAUCUCUGUA_CCC_UGC\n______________||:|||||||_|||_|:|\n______________AUGGAGACAU_GGG_AUG\n3'-AUU...GUAGA__________________-5'\n_____________|_________________|\n_____________17________________1\n |
86 -- 92 |
7 -- 13 |
-19.6311 kcal/mol |
1.07825 kcal/mol |
6.59719 kcal/mol |
82 101@LB@ | |@LB@5'-GAA...UCAAC A U CCGUA...GGG-3'@LB@ UAUCUCUGUA CCC UGC@LB@ ||:||||||| ||| |:|@LB@ AUGGAGACAU GGG AUG@LB@3'-AUU...GUAGA -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.6311 kcal/mol@LB@Unfolding Energy - mRNA 1.07825 kcal/mol@LB@Unfolding Energy - sRNA 6.59719 kcal/mol@LB@@LB@Position - mRNA 83 -- 100@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 7 -- 13@LB@ |
78 |
0.001629 |
0.07345 |
b2624 |
alpA |
-3.42 |
0.861549 |
231 -- 237 |
49 -- 55 |
CP4-57 prophage; DNA-binding transcriptional activator |
|
_____________230_____238\n_____________|_______|\n5'-CGC...UACUA_______CAGCG...AAU-3'\n______________CGGUUAC\n______________||:||||\n______________GCUAAUG\n3'-AUU...UUUAG_______CACUU...AUG-5'\n_____________|_______|\n_____________56______48\n |
231 -- 237 |
49 -- 55 |
-7.04991 kcal/mol |
3.33366 kcal/mol |
0.311712 kcal/mol |
230 238@LB@ | |@LB@5'-CGC...UACUA CAGCG...AAU-3'@LB@ CGGUUAC@LB@ ||:||||@LB@ GCUAAUG@LB@3'-AUU...UUUAG CACUU...AUG-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -7.04991 kcal/mol@LB@Unfolding Energy - mRNA 3.33366 kcal/mol@LB@Unfolding Energy - sRNA 0.311712 kcal/mol@LB@@LB@Position - mRNA 231 -- 237@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
129 |
0.004413 |
0.1199 |
b0062 |
araA |
-8.60 |
0.109835 |
267 -- 273 |
1 -- 7 |
L-arabinose isomerase |
|
_____________266_____274\n_____________|_______|\n5'-CGC...CGGAA_______GUCAG...ACG-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
267 -- 273 |
1 -- 7 |
-12.3746 kcal/mol |
1.75625 kcal/mol |
2.03949 kcal/mol |
266 274@LB@ | |@LB@5'-CGC...CGGAA GUCAG...ACG-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.3746 kcal/mol@LB@Unfolding Energy - mRNA 1.75625 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 267 -- 273@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
83 |
0.001985 |
0.08414 |
b1901 |
araF |
-10.36 |
0.035498 |
164 -- 171 |
1 -- 8 |
L-arabinose ABC transporter periplasmic binding protein |
|
_____________163______172\n_____________|________|\n5'-UCC...GUUUU________ACAAA...AGC-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
165 -- 171 |
1 -- 7 |
-13.292 kcal/mol |
0.840759 kcal/mol |
2.11603 kcal/mol |
163 172@LB@ | |@LB@5'-UCC...GUUUU ACAAA...AGC-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -13.292 kcal/mol@LB@Unfolding Energy - mRNA 0.840759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 164 -- 171@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 1 -- 7@LB@ |
19 |
8.831e-05 |
0.01635 |
b3389 |
aroB |
-10.54 |
0.031183 |
4 -- 17 |
42 -- 56 |
3-dehydroquinate synthase |
|
_____________3_______________18\n_____________|_______________|\n________5'-ACA___CC__________UCUGG...CGG-3'\n______________CCG___GCGUGAAGU\n______________|||___:||||||||\n______________GGC___UGCACUUCA\n3'-AUU...GUUUA___UAA_________UUUUC...AUG-5'\n_____________|_______________|\n_____________57______________41\n |
11 -- 17 |
42 -- 48 |
-15.9415 kcal/mol |
2.13198 kcal/mol |
3.27911 kcal/mol |
3 18@LB@ | |@LB@ 5'-ACA CC UCUGG...CGG-3'@LB@ CCG GCGUGAAGU@LB@ ||| :||||||||@LB@ GGC UGCACUUCA@LB@3'-AUU...GUUUA UAA UUUUC...AUG-5'@LB@ | |@LB@ 57 41@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -15.9415 kcal/mol@LB@Unfolding Energy - mRNA 2.13198 kcal/mol@LB@Unfolding Energy - sRNA 3.27911 kcal/mol@LB@@LB@Position - mRNA 4 -- 17@LB@Position - sRNA 42 -- 56@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 42 -- 48@LB@ |
57 |
0.0008523 |
0.0526 |
b3281 |
aroE |
-7.63 |
0.189523 |
225 -- 232 |
52 -- 59 |
dehydroshikimate reductase NAD(P)-binding |
|
_____________224______233\n_____________|________|\n5'-UUU...UUGGU________AGCCC...AUG-3'\n______________AAUCCGAU\n______________||||||||\n______________UUAGGCUA\n3'-AUU...UCGGU________AUGCA...AUG-5'\n_____________|________|\n_____________60_______51\n |
226 -- 232 |
52 -- 58 |
-9.52512 kcal/mol |
1.61129 kcal/mol |
0.296943 kcal/mol |
224 233@LB@ | |@LB@5'-UUU...UUGGU AGCCC...AUG-3'@LB@ AAUCCGAU@LB@ ||||||||@LB@ UUAGGCUA@LB@3'-AUU...UCGGU AUGCA...AUG-5'@LB@ | |@LB@ 60 51@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -9.52512 kcal/mol@LB@Unfolding Energy - mRNA 1.61129 kcal/mol@LB@Unfolding Energy - sRNA 0.296943 kcal/mol@LB@@LB@Position - mRNA 225 -- 232@LB@Position - sRNA 52 -- 59@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 52 -- 58@LB@ |
49 |
0.0005477 |
0.03933 |
b2715 |
ascF |
-9.59 |
0.059292 |
173 -- 180 |
1 -- 8 |
cellobiose/arbutin/salicin-specific PTS enzymes IIB and IC components |
|
_____________172______181\n_____________|________|\n5'-UGC...ACAUC________UGAUA...GCU-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
174 -- 180 |
1 -- 7 |
-12.1729 kcal/mol |
0.486168 kcal/mol |
2.11603 kcal/mol |
172 181@LB@ | |@LB@5'-UGC...ACAUC UGAUA...GCU-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -12.1729 kcal/mol@LB@Unfolding Energy - mRNA 0.486168 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 173 -- 180@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
75 |
0.001328 |
0.06227 |
b1748 |
astC |
-8.39 |
0.124654 |
121 -- 127 |
1 -- 7 |
succinylornithine transaminase PLP-dependent |
|
_____________120_____128\n_____________|_______|\n5'-UCA...CACGA_______AAUCU...UGU-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.9071 kcal/mol |
1.50434 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UCA...CACGA AAUCU...UGU-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -11.9071 kcal/mol@LB@Unfolding Energy - mRNA 1.50434 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
157 |
0.006279 |
0.1407 |
b0312 |
betB |
-8.02 |
0.153308 |
1 -- 12 |
52 -- 63 |
betaine aldehyde dehydrogenase NAD-dependent |
|
______________1___________13\n______________|___________|\n___________5'-____________GAGCG...ACG-3'\n______________GUCGAAUCUGGU\n______________|:|:||||:|:|\n______________CGGUUUAGGCUA\n3'-AUU...UAAGU____________AUGCA...AUG-5'\n_____________|____________|\n_____________64___________51\n |
6 -- 12 |
52 -- 58 |
-15.0997 kcal/mol |
0.969406 kcal/mol |
6.13017 kcal/mol |
1 13@LB@ | |@LB@ 5'- GAGCG...ACG-3'@LB@ GUCGAAUCUGGU@LB@ |:|:||||:|:|@LB@ CGGUUUAGGCUA@LB@3'-AUU...UAAGU AUGCA...AUG-5'@LB@ | |@LB@ 64 51@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -15.0997 kcal/mol@LB@Unfolding Energy - mRNA 0.969406 kcal/mol@LB@Unfolding Energy - sRNA 6.13017 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 52 -- 63@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |
54 |
0.0007615 |
0.04961 |
b0313 |
betI |
-7.44 |
0.209816 |
47 -- 68 |
32 -- 57 |
choline-inducible betIBA-betT divergent operon transcriptional repressor |
|
_____________46_________________________69\n_____________|__________________________|\n5'-CAG...CCUUU___C________U_____________UCAUC...CGC-3'\n______________UCC___UGC_UG__GUGAAAGGUCUG\n______________|||___|:|_||__||:|||||||||\n______________AGG___AUG_AC__CAUUUUCCAGAC\n3'-AUU...GGUUU___CUA___C__UU____________UUUCU...AUG-5'\n_____________|__________________________|\n_____________58_________________________31\n |
62 -- 68 |
32 -- 38 |
-22.1015 kcal/mol |
6.64828 kcal/mol |
7.92091 kcal/mol |
46 69@LB@ | |@LB@5'-CAG...CCUUU C U UCAUC...CGC-3'@LB@ UCC UGC UG GUGAAAGGUCUG@LB@ ||| |:| || ||:|||||||||@LB@ AGG AUG AC CAUUUUCCAGAC@LB@3'-AUU...GGUUU CUA C UU UUUCU...AUG-5'@LB@ | |@LB@ 58 31@LB@@LB@@LB@Energy -7.44 kcal/mol@LB@Hybridization Energy -22.1015 kcal/mol@LB@Unfolding Energy - mRNA 6.64828 kcal/mol@LB@Unfolding Energy - sRNA 7.92091 kcal/mol@LB@@LB@Position - mRNA 47 -- 68@LB@Position - sRNA 32 -- 57@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 32 -- 38@LB@ |
23 |
0.0001777 |
0.02687 |
b0774 |
bioA |
-12.72 |
0.005870 |
209 -- 228 |
5 -- 24 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________208___________________229\n_____________|_____________________|\n5'-ACG...ACAAC____G________________AACGC...AAG-3'\n______________GGAC_AUCUUGCCUUUG_ACC\n______________|:||_|||||:|||:||_|||\n______________CUUG_UAGAAUGGAGAC_UGG\n3'-AUU...UCUAU_________________A___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
219 -- 225 |
9 -- 15 |
-24.4474 kcal/mol |
3.74608 kcal/mol |
8.01095 kcal/mol |
208 229@LB@ | |@LB@5'-ACG...ACAAC G AACGC...AAG-3'@LB@ GGAC AUCUUGCCUUUG ACC@LB@ |:|| |||||:|||:|| |||@LB@ CUUG UAGAAUGGAGAC UGG@LB@3'-AUU...UCUAU A GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -24.4474 kcal/mol@LB@Unfolding Energy - mRNA 3.74608 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 9 -- 15@LB@ |
45 |
0.0004826 |
0.03773 |
b4133 |
cadC |
-9.27 |
0.072737 |
38 -- 110 |
5 -- 66 |
cadBA operon transcriptional activator |
|
_____________37______________________________________________________________________________111\n_____________|_______________________________________________________________________________|\n5'-GAU...GGUUC_____A______U_______AAUACUAUGUAAUCAA_____UUAU_______UAAAAAU__________A_________AAUAA...UAA-3'\n______________UCAGU_AAAUCC__UU_CGU________________GAAGU____GG_CUGG_______AACGUCUUGC_UUC___ACC\n______________||||:_||||||__||_|||________________|||||____||_|||:_______|||:||||:|_:||___|||\n______________AGUCG_UUUAGG__AA_GCA________________CUUCA____CC_GACU_______UUGUAGAAUG_GAG___UGG\n3'-AUU...UUAUA_____G______CU__U________________________UUUU__A____UUCUAUC______________ACA___GAUG-5'\n_____________|_______________________________________________________________________________|\n_____________67______________________________________________________________________________4\n |
97 -- 103 |
14 -- 20 |
-38.0459 kcal/mol |
10.2122 kcal/mol |
18.5819 kcal/mol |
37 111@LB@ | |@LB@5'-GAU...GGUUC A U AAUACUAUGUAAUCAA UUAU UAAAAAU A AAUAA...UAA-3'@LB@ UCAGU AAAUCC UU CGU GAAGU GG CUGG AACGUCUUGC UUC ACC@LB@ ||||: |||||| || ||| ||||| || |||: |||:||||:| :|| |||@LB@ AGUCG UUUAGG AA GCA CUUCA CC GACU UUGUAGAAUG GAG UGG@LB@3'-AUU...UUAUA G CU U UUUU A UUCUAUC ACA GAUG-5'@LB@ | |@LB@ 67 4@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -38.0459 kcal/mol@LB@Unfolding Energy - mRNA 10.2122 kcal/mol@LB@Unfolding Energy - sRNA 18.5819 kcal/mol@LB@@LB@Position - mRNA 38 -- 110@LB@Position - sRNA 5 -- 66@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 14 -- 20@LB@ |
190 |
0.008456 |
0.1558 |
b0036 |
caiD |
-8.40 |
0.123663 |
110 -- 117 |
1 -- 8 |
carnitinyl-CoA dehydratase |
|
_____________109______118\n_____________|________|\n5'-UGG...GGAAC________CAGCU...AAA-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
111 -- 117 |
1 -- 7 |
-12.4513 kcal/mol |
1.95818 kcal/mol |
2.11603 kcal/mol |
109 118@LB@ | |@LB@5'-UGG...GGAAC CAGCU...AAA-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -12.4513 kcal/mol@LB@Unfolding Energy - mRNA 1.95818 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 110 -- 117@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 1 -- 7@LB@ |
128 |
0.004347 |
0.1195 |
b3690 |
cbrA |
-9.56 |
0.060736 |
197 -- 211 |
17 -- 31 |
colicin M resistance protein; FAD-binding protein putative oxidoreductase |
|
_____________196_____________212\n_____________|_______________|\n5'-CAG...AGUGA_______________CGACG...AAA-3'\n______________AAAGAUGGAACAUUU\n______________||||||:||||||:|\n______________UUUCUAUCUUGUAGA\n3'-AUU...CAGAC_______________AUGGA...AUG-5'\n_____________|_______________|\n_____________32______________16\n |
204 -- 210 |
18 -- 24 |
-17.0326 kcal/mol |
3.22818 kcal/mol |
4.26586 kcal/mol |
196 212@LB@ | |@LB@5'-CAG...AGUGA CGACG...AAA-3'@LB@ AAAGAUGGAACAUUU@LB@ ||||||:||||||:|@LB@ UUUCUAUCUUGUAGA@LB@3'-AUU...CAGAC AUGGA...AUG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -17.0326 kcal/mol@LB@Unfolding Energy - mRNA 3.22818 kcal/mol@LB@Unfolding Energy - sRNA 4.26586 kcal/mol@LB@@LB@Position - mRNA 197 -- 211@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 18 -- 24@LB@ |
121 |
0.004045 |
0.1176 |
b1738 |
chbB |
-6.64 |
0.311906 |
2 -- 15 |
34 -- 50 |
N N'-diacetylchitobiose-specific enzyme IIB component of PTS |
|
_____________1_________________16\n_____________|_________________|\n__________5'-A_________________AUAAC...CGG-3'\n______________AUGUGAAG___AGGGUC\n______________|:||||||___|:||||\n______________UGCACUUC___UUCCAG\n3'-AUU...GCUAA________AUU______ACUUU...AUG-5'\n_____________|_________________|\n_____________51________________33\n |
3 -- 9 |
43 -- 49 |
-17.276 kcal/mol |
2.8636 kcal/mol |
7.69543 kcal/mol |
1 16@LB@ | |@LB@ 5'-A AUAAC...CGG-3'@LB@ AUGUGAAG AGGGUC@LB@ |:|||||| |:||||@LB@ UGCACUUC UUCCAG@LB@3'-AUU...GCUAA AUU ACUUU...AUG-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -17.276 kcal/mol@LB@Unfolding Energy - mRNA 2.8636 kcal/mol@LB@Unfolding Energy - sRNA 7.69543 kcal/mol@LB@@LB@Position - mRNA 2 -- 15@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 43 -- 49@LB@ |
47 |
0.0005047 |
0.03778 |
b1888 |
cheA |
-10.26 |
0.037926 |
179 -- 191 |
53 -- 66 |
fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
|
_____________178____________192\n_____________|______________|\n5'-GAU...UGCCA______________GGUGA...AAG-3'\n______________UCAGCCGAA_CCGA\n______________||||||:||_||||\n______________AGUCGGUUU_GGCU\n3'-AUU...UUAUA_________A____AAUGC...AUG-5'\n_____________|______________|\n_____________67_____________52\n |
181 -- 187 |
58 -- 64 |
-19.401 kcal/mol |
2.99348 kcal/mol |
6.16775 kcal/mol |
178 192@LB@ | |@LB@5'-GAU...UGCCA GGUGA...AAG-3'@LB@ UCAGCCGAA CCGA@LB@ ||||||:|| ||||@LB@ AGUCGGUUU GGCU@LB@3'-AUU...UUAUA A AAUGC...AUG-5'@LB@ | |@LB@ 67 52@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -19.401 kcal/mol@LB@Unfolding Energy - mRNA 2.99348 kcal/mol@LB@Unfolding Energy - sRNA 6.16775 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 53 -- 66@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 58 -- 64@LB@ |
154 |
0.006224 |
0.1406 |
b0882 |
clpA |
-11.36 |
0.017252 |
127 -- 158 |
2 -- 32 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________126______________________________159\n_____________|________________________________|\n5'-UUU...CGCGA______AU_______CAUUG__G_____G___GAAAA...CGC-3'\n______________GGGAGA__GAGCAUC_____CU_UGUAC_CUA\n______________|::|||__||:||||_____||_|||||_|||\n______________CUUUCU__CUUGUAG_____GA_ACAUG_GAU\n3'-AUU...CCAGA______AU_______AAUG___G_____G___G-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
135 -- 141 |
18 -- 24 |
-27.9684 kcal/mol |
7.80814 kcal/mol |
8.82442 kcal/mol |
126 159@LB@ | |@LB@5'-UUU...CGCGA AU CAUUG G G GAAAA...CGC-3'@LB@ GGGAGA GAGCAUC CU UGUAC CUA@LB@ |::||| ||:|||| || ||||| |||@LB@ CUUUCU CUUGUAG GA ACAUG GAU@LB@3'-AUU...CCAGA AU AAUG G G G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -27.9684 kcal/mol@LB@Unfolding Energy - mRNA 7.80814 kcal/mol@LB@Unfolding Energy - sRNA 8.82442 kcal/mol@LB@@LB@Position - mRNA 127 -- 158@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 18 -- 24@LB@ |
135 |
0.004796 |
0.125 |
b3634 |
coaD |
-9.06 |
0.083023 |
69 -- 85 |
49 -- 66 |
pantetheine-phosphate adenylyltransferase |
|
_____________68_________________86\n_____________|__________________|\n5'-GGA...UUUAC________CG________CGUAG...UUC-3'\n______________UCA_CCGA__CCGAUUAC\n______________|||_||:|__||||||||\n______________AGU_GGUU__GGCUAAUG\n3'-AUU...UUAUA___C____UA________CACUU...AUG-5'\n_____________|__________________|\n_____________67_________________48\n |
79 -- 85 |
49 -- 55 |
-17.7938 kcal/mol |
2.54845 kcal/mol |
6.20469 kcal/mol |
68 86@LB@ | |@LB@5'-GGA...UUUAC CG CGUAG...UUC-3'@LB@ UCA CCGA CCGAUUAC@LB@ ||| ||:| ||||||||@LB@ AGU GGUU GGCUAAUG@LB@3'-AUU...UUAUA C UA CACUU...AUG-5'@LB@ | |@LB@ 67 48@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -17.7938 kcal/mol@LB@Unfolding Energy - mRNA 2.54845 kcal/mol@LB@Unfolding Energy - sRNA 6.20469 kcal/mol@LB@@LB@Position - mRNA 69 -- 85@LB@Position - sRNA 49 -- 66@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 49 -- 55@LB@ |
102 |
0.003218 |
0.1101 |
b3816 |
corA |
-9.85 |
0.049984 |
130 -- 160 |
4 -- 37 |
magnesium/nickel/cobalt transporter |
|
_____________129_________________________________161\n_____________|___________________________________|\n5'-ACC...UUAAU_________CCCA________GUU___G_______ACCGA...AAC-3'\n______________GGUCUGAAA________AUUU___UCU_UGUGCCC\n______________|||||||||________||:|___:||_|||:|||\n______________CCAGACUUU________UAGA___GGA_ACAUGGG\n3'-AUU...AUUUU_________CUAUCUUG____AU____G_______AUG-5'\n_____________|___________________________________|\n_____________38__________________________________3\n |
154 -- 160 |
4 -- 10 |
-28.4013 kcal/mol |
7.22925 kcal/mol |
11.3428 kcal/mol |
129 161@LB@ | |@LB@5'-ACC...UUAAU CCCA GUU G ACCGA...AAC-3'@LB@ GGUCUGAAA AUUU UCU UGUGCCC@LB@ ||||||||| ||:| :|| |||:|||@LB@ CCAGACUUU UAGA GGA ACAUGGG@LB@3'-AUU...AUUUU CUAUCUUG AU G AUG-5'@LB@ | |@LB@ 38 3@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -28.4013 kcal/mol@LB@Unfolding Energy - mRNA 7.22925 kcal/mol@LB@Unfolding Energy - sRNA 11.3428 kcal/mol@LB@@LB@Position - mRNA 130 -- 160@LB@Position - sRNA 4 -- 37@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 4 -- 10@LB@ |
94 |
0.002669 |
0.09947 |
b2659 |
csiD |
-13.62 |
0.002680 |
28 -- 48 |
1 -- 21 |
carbon starvation protein |
|
_____________27____________________49\n_____________|_____________________|\n5'-GUU...UGUCU__C________AA________GUUAA...UGG-3'\n______________CA_UUUGCCUU__UACCCUAC\n______________||_:||:|||:__||||||||\n______________GU_GAAUGGAG__AUGGGAUG\n3'-AUU...AUCUU__A________AC________-5'\n_____________|____________________|\n_____________22___________________1\n |
42 -- 48 |
1 -- 7 |
-22.7197 kcal/mol |
1.13457 kcal/mol |
7.99195 kcal/mol |
27 49@LB@ | |@LB@5'-GUU...UGUCU C AA GUUAA...UGG-3'@LB@ CA UUUGCCUU UACCCUAC@LB@ || :||:|||: ||||||||@LB@ GU GAAUGGAG AUGGGAUG@LB@3'-AUU...AUCUU A AC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -22.7197 kcal/mol@LB@Unfolding Energy - mRNA 1.13457 kcal/mol@LB@Unfolding Energy - sRNA 7.99195 kcal/mol@LB@@LB@Position - mRNA 28 -- 48@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 1 -- 7@LB@ |
61 |
0.0009386 |
0.05413 |
b0574 |
cusB |
-12.39 |
0.007718 |
27 -- 84 |
1 -- 59 |
copper/silver efflux system membrane fusion protein |
|
_____________26_____________________________________________________________85\n_____________|______________________________________________________________|\n5'-AAA...AUCAC______________CC_____CU__C_G____U__CCAU___C______A_________C__AGACG...AAA-3'\n______________GAUCCGAUUGC_UG__GUGAA__GG_C_GAGA_GA____GCG_UUUACC_UC___ACCC_GC\n______________:||||||||:|_||__||:||__||_|_||:|_||____:|:_:|||||_||___||||_:|\n______________UUAGGCUAAUG_AC__CAUUU__CC_G_CUUU_CU____UGU_GAAUGG_AG___UGGG_UG\n3'-AUU...UCGGU___________C__UU_____U___A_A_______AUCU___A_________ACA____A__-5'\n_____________|_____________________________________________________________|\n_____________60____________________________________________________________1\n |
31 -- 37 |
49 -- 55 |
-39.7476 kcal/mol |
14.6812 kcal/mol |
12.7027 kcal/mol |
26 85@LB@ | |@LB@5'-AAA...AUCAC CC CU C G U CCAU C A C AGACG...AAA-3'@LB@ GAUCCGAUUGC UG GUGAA GG C GAGA GA GCG UUUACC UC ACCC GC@LB@ :||||||||:| || ||:|| || | ||:| || :|: :||||| || |||| :|@LB@ UUAGGCUAAUG AC CAUUU CC G CUUU CU UGU GAAUGG AG UGGG UG@LB@3'-AUU...UCGGU C UU U A A AUCU A ACA A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -39.7476 kcal/mol@LB@Unfolding Energy - mRNA 14.6812 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 27 -- 84@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 49 -- 55@LB@ |
199 |
0.008811 |
0.1558 |
b4515 |
cydX |
-11.13 |
0.020449 |
151 -- 184 |
5 -- 31 |
cytochrome d (bd-I) ubiquinol oxidase subunit X |
|
_____________150________________________________185\n_____________|__________________________________|\n5'-ACC...CCAAA_______UU______AAC___CACUC________AAGUA...GUC-3'\n______________GAAGAUA__GAACGU___ACC_____UCUGUACU\n______________:||||||__||||:|___|||_____|||||||:\n______________UUUCUAU__CUUGUA___UGG_____AGACAUGG\n3'-AUU...CAGAC_______________GAA________________GAUG-5'\n_____________|__________________________________|\n_____________32_________________________________4\n |
178 -- 184 |
5 -- 11 |
-22.8813 kcal/mol |
3.72257 kcal/mol |
8.05162 kcal/mol |
150 185@LB@ | |@LB@5'-ACC...CCAAA UU AAC CACUC AAGUA...GUC-3'@LB@ GAAGAUA GAACGU ACC UCUGUACU@LB@ :|||||| ||||:| ||| |||||||:@LB@ UUUCUAU CUUGUA UGG AGACAUGG@LB@3'-AUU...CAGAC GAA GAUG-5'@LB@ | |@LB@ 32 4@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -22.8813 kcal/mol@LB@Unfolding Energy - mRNA 3.72257 kcal/mol@LB@Unfolding Energy - sRNA 8.05162 kcal/mol@LB@@LB@Position - mRNA 151 -- 184@LB@Position - sRNA 5 -- 31@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 5 -- 11@LB@ |
80 |
0.001713 |
0.07533 |
b1343 |
dbpA |
-13.62 |
0.002663 |
221 -- 243 |
1 -- 24 |
ATP-dependent RNA helicase specific for 23S rRNA |
|
_____________220______________________244\n_____________|________________________|\n5'-ACG...ACCCU______________CC_____A__UCACG...CGC-3'\n______________GAAUGUUUUGCCUC___GCCC_AC\n______________|||::|:||:||||___:|||_||\n______________CUUGUAGAAUGGAG___UGGG_UG\n3'-AUU...UCUAU______________ACA____A__-5'\n_____________|_______________________|\n_____________25______________________1\n |
228 -- 234 |
11 -- 17 |
-24.5457 kcal/mol |
2.92371 kcal/mol |
8.02158 kcal/mol |
220 244@LB@ | |@LB@5'-ACG...ACCCU CC A UCACG...CGC-3'@LB@ GAAUGUUUUGCCUC GCCC AC@LB@ |||::|:||:|||| :||| ||@LB@ CUUGUAGAAUGGAG UGGG UG@LB@3'-AUU...UCUAU ACA A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -24.5457 kcal/mol@LB@Unfolding Energy - mRNA 2.92371 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 221 -- 243@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 11 -- 17@LB@ |
137 |
0.004974 |
0.127 |
b0092 |
ddlB |
-6.99 |
0.263821 |
283 -- 297 |
43 -- 56 |
D-alanine:D-alanine ligase |
|
_____________282_____________298\n_____________|_______________|\n5'-UUC...GUUAG____AC_________GCG-3'\n______________CCGG__UGCGUGAAG\n______________|||:__|:|||||||\n______________GGCU__AUGCACUUC\n3'-AUU...GUUUA____A__________AUUUU...AUG-5'\n_____________|_______________|\n_____________57______________42\n |
291 -- 297 |
43 -- 49 |
-17.3937 kcal/mol |
7.14584 kcal/mol |
3.27327 kcal/mol |
282 298@LB@ | |@LB@5'-UUC...GUUAG AC GCG-3'@LB@ CCGG UGCGUGAAG@LB@ |||: |:|||||||@LB@ GGCU AUGCACUUC@LB@3'-AUU...GUUUA A AUUUU...AUG-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -17.3937 kcal/mol@LB@Unfolding Energy - mRNA 7.14584 kcal/mol@LB@Unfolding Energy - sRNA 3.27327 kcal/mol@LB@@LB@Position - mRNA 283 -- 297@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 43 -- 49@LB@ |
24 |
0.0002009 |
0.02687 |
b1487 |
ddpA |
-9.43 |
0.065911 |
261 -- 269 |
48 -- 56 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________260_______270\n_____________|_________|\n5'-UCA...AUUUC_________CACGC...UGA-3'\n______________CCGGUUGCG\n______________|||:||:||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
263 -- 269 |
48 -- 54 |
-13.2683 kcal/mol |
2.26031 kcal/mol |
1.55919 kcal/mol |
260 270@LB@ | |@LB@5'-UCA...AUUUC CACGC...UGA-3'@LB@ CCGGUUGCG@LB@ |||:||:||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2683 kcal/mol@LB@Unfolding Energy - mRNA 2.26031 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 261 -- 269@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 48 -- 54@LB@ |
132 |
0.004657 |
0.1239 |
b1200 |
dhaK |
-7.52 |
0.201505 |
172 -- 179 |
1 -- 8 |
dihydroxyacetone kinase PTS-dependent dihydroxyacetone-binding subunit |
|
_____________171______180\n_____________|________|\n5'-UUC...AUCCA________CGUAA...UGU-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
173 -- 179 |
1 -- 7 |
-12.1513 kcal/mol |
2.5392 kcal/mol |
2.11603 kcal/mol |
171 180@LB@ | |@LB@5'-UUC...AUCCA CGUAA...UGU-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -12.1513 kcal/mol@LB@Unfolding Energy - mRNA 2.5392 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 172 -- 179@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
89 |
0.002377 |
0.09395 |
b4136 |
dsbD |
-10.47 |
0.032769 |
211 -- 231 |
1 -- 22 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________210____________________232\n_____________|______________________|\n5'-UGC...UCAAC_______UA_G___________UACUU...CGG-3'\n______________GCAUCUU__C_CUG_AUCCUGC\n______________:||||||__|_|||_|:|||:|\n______________UGUAGAA__G_GAC_UGGGAUG\n3'-AUU...UAUCU_______UG_A___A_______-5'\n_____________|_____________________|\n_____________23____________________1\n |
225 -- 231 |
1 -- 7 |
-23.5098 kcal/mol |
5.0672 kcal/mol |
7.99236 kcal/mol |
210 232@LB@ | |@LB@5'-UGC...UCAAC UA G UACUU...CGG-3'@LB@ GCAUCUU C CUG AUCCUGC@LB@ :|||||| | ||| |:|||:|@LB@ UGUAGAA G GAC UGGGAUG@LB@3'-AUU...UAUCU UG A A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.47 kcal/mol@LB@Hybridization Energy -23.5098 kcal/mol@LB@Unfolding Energy - mRNA 5.0672 kcal/mol@LB@Unfolding Energy - sRNA 7.99236 kcal/mol@LB@@LB@Position - mRNA 211 -- 231@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 1 -- 7@LB@ |
14 |
5.486e-05 |
0.01183 |
b0420 |
dxs |
-9.76 |
0.053178 |
24 -- 31 |
1 -- 8 |
1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring |
|
_____________23_______32\n_____________|________|\n5'-ACC...GUACC________ACUUC...ACG-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
25 -- 31 |
1 -- 7 |
-13.3609 kcal/mol |
1.5078 kcal/mol |
2.11603 kcal/mol |
23 32@LB@ | |@LB@5'-ACC...GUACC ACUUC...ACG-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -13.3609 kcal/mol@LB@Unfolding Energy - mRNA 1.5078 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 24 -- 31@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 1 -- 7@LB@ |
70 |
0.001199 |
0.05856 |
b0954 |
fabA |
-10.37 |
0.035200 |
228 -- 254 |
4 -- 31 |
beta-hydroxydecanoyl thioester dehydrase |
|
_____________227__________________________255\n_____________|____________________________|\n5'-GUG...AUACA_________C_U___________GU_G_GGUGA...ACA-3'\n______________AAAGA_AGA_C_UCUUGCCUCUG__C_C\n______________|||||_|||_|_||||:||||||__|_|\n______________UUUCU_UCU_G_AGAAUGGAGAC__G_G\n3'-AUU...CAGAC_____A___U_U___________AU_G_AUG-5'\n_____________|____________________________|\n_____________32___________________________3\n |
243 -- 249 |
9 -- 15 |
-26.2676 kcal/mol |
7.86183 kcal/mol |
8.05676 kcal/mol |
227 255@LB@ | |@LB@5'-GUG...AUACA C U GU G GGUGA...ACA-3'@LB@ AAAGA AGA C UCUUGCCUCUG C C@LB@ ||||| ||| | ||||:|||||| | |@LB@ UUUCU UCU G AGAAUGGAGAC G G@LB@3'-AUU...CAGAC A U U AU G AUG-5'@LB@ | |@LB@ 32 3@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -26.2676 kcal/mol@LB@Unfolding Energy - mRNA 7.86183 kcal/mol@LB@Unfolding Energy - sRNA 8.05676 kcal/mol@LB@@LB@Position - mRNA 228 -- 254@LB@Position - sRNA 4 -- 31@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 9 -- 15@LB@ |
133 |
0.004686 |
0.1239 |
b3081 |
fadH |
-11.00 |
0.022420 |
2 -- 21 |
1 -- 24 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________1________________________22\n_____________|________________________|\n__________5'-U_____C__________________AUGUG...ACC-3'\n______________GGACG_CUUAUC_C___GCCCUAC\n______________|:||:_||||:|_|___:||||||\n______________CUUGU_GAAUGG_G___UGGGAUG\n3'-AUU...UCUAU_____A______A_ACA_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
15 -- 21 |
1 -- 7 |
-21.5738 kcal/mol |
2.57038 kcal/mol |
8.02158 kcal/mol |
1 22@LB@ | |@LB@ 5'-U C AUGUG...ACC-3'@LB@ GGACG CUUAUC C GCCCUAC@LB@ |:||: ||||:| | :||||||@LB@ CUUGU GAAUGG G UGGGAUG@LB@3'-AUU...UCUAU A A ACA -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -21.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.57038 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 1 -- 7@LB@ |
21 |
0.0001601 |
0.02641 |
b2344 |
fadL |
-13.31 |
0.003531 |
80 -- 135 |
1 -- 58 |
long-chain fatty acid outer membrane transporter |
|
_____________79_________________________________________________________________136\n_____________|__________________________________________________________________|\n5'-UCC...AGCUG______CCUA___UCUCGCCACU________UUUCU____________________A_________ACUUC...UUU-3'\n______________GUCCGA____UAC___________GGUCUGA_____AAGAUG________UACCUC_G_ACCCUAC\n______________:|||||____|||___________|||||||_____|||||:________||||||_|_|||||||\n______________UAGGCU____AUG___________CCAGACU_____UUCUAU________AUGGAG_C_UGGGAUG\n3'-AUU...CGGUU______A______CACUUCAUUUU__________________CUUGUAGA______A_A_______-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
129 -- 135 |
1 -- 7 |
-38.7471 kcal/mol |
12.7593 kcal/mol |
12.7027 kcal/mol |
79 136@LB@ | |@LB@5'-UCC...AGCUG CCUA UCUCGCCACU UUUCU A ACUUC...UUU-3'@LB@ GUCCGA UAC GGUCUGA AAGAUG UACCUC G ACCCUAC@LB@ :||||| ||| ||||||| |||||: |||||| | |||||||@LB@ UAGGCU AUG CCAGACU UUCUAU AUGGAG C UGGGAUG@LB@3'-AUU...CGGUU A CACUUCAUUUU CUUGUAGA A A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -38.7471 kcal/mol@LB@Unfolding Energy - mRNA 12.7593 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 80 -- 135@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 1 -- 7@LB@ |
143 |
0.005218 |
0.1284 |
b1922 |
fliA |
-8.86 |
0.094137 |
133 -- 141 |
50 -- 58 |
RNA polymerase sigma 28 (sigma F) factor |
|
_____________132_______142\n_____________|_________|\n5'-AGG...UAAUC_________AAAAC...UUC-3'\n______________GUCCGAUUA\n______________:||||||||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
135 -- 141 |
50 -- 56 |
-11.3914 kcal/mol |
2.23267 kcal/mol |
0.317553 kcal/mol |
132 142@LB@ | |@LB@5'-AGG...UAAUC AAAAC...UUC-3'@LB@ GUCCGAUUA@LB@ :||||||||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -11.3914 kcal/mol@LB@Unfolding Energy - mRNA 2.23267 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 133 -- 141@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 50 -- 56@LB@ |
71 |
0.001214 |
0.05856 |
b1921 |
fliZ |
-11.32 |
0.017729 |
260 -- 276 |
48 -- 65 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________259________________277\n_____________|__________________|\n5'-UGC...AAACA___________C______CGCAU...AUC-3'\n______________CAGCCAGA_CC_AUUGCG\n______________||||||:|_||_|||:||\n______________GUCGGUUU_GG_UAAUGC\n3'-AUU...UAUAA________A__C______ACUUC...AUG-5'\n_____________|__________________|\n_____________66_________________47\n |
261 -- 267 |
58 -- 64 |
-20.8295 kcal/mol |
2.05358 kcal/mol |
7.47467 kcal/mol |
259 277@LB@ | |@LB@5'-UGC...AAACA C CGCAU...AUC-3'@LB@ CAGCCAGA CC AUUGCG@LB@ ||||||:| || |||:||@LB@ GUCGGUUU GG UAAUGC@LB@3'-AUU...UAUAA A C ACUUC...AUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -20.8295 kcal/mol@LB@Unfolding Energy - mRNA 2.05358 kcal/mol@LB@Unfolding Energy - sRNA 7.47467 kcal/mol@LB@@LB@Position - mRNA 260 -- 276@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |
198 |
0.008802 |
0.1558 |
b1905 |
ftnA |
-8.07 |
0.149574 |
234 -- 260 |
3 -- 24 |
ferritin iron storage protein (cytoplasmic) |
|
_____________233_________________________261\n_____________|___________________________|\n5'-CAU...UUAAU_____GA_GA____GGAA_________UCACU...AUC-3'\n______________GAGCA__U__ACCU____CUGUACUCU\n______________||:||__|__||||____||||||:||\n______________CUUGU__A__UGGA____GACAUGGGA\n3'-AUU...UCUAU_____AG_A__________________UG-5'\n_____________|___________________________|\n_____________25__________________________2\n |
254 -- 260 |
3 -- 9 |
-20.546 kcal/mol |
4.48094 kcal/mol |
8.02061 kcal/mol |
233 261@LB@ | |@LB@5'-CAU...UUAAU GA GA GGAA UCACU...AUC-3'@LB@ GAGCA U ACCU CUGUACUCU@LB@ ||:|| | |||| ||||||:||@LB@ CUUGU A UGGA GACAUGGGA@LB@3'-AUU...UCUAU AG A UG-5'@LB@ | |@LB@ 25 2@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -20.546 kcal/mol@LB@Unfolding Energy - mRNA 4.48094 kcal/mol@LB@Unfolding Energy - sRNA 8.02061 kcal/mol@LB@@LB@Position - mRNA 234 -- 260@LB@Position - sRNA 3 -- 24@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 3 -- 9@LB@ |
99 |
0.00311 |
0.1096 |
b2801 |
fucP |
-13.12 |
0.004165 |
162 -- 172 |
46 -- 56 |
L-fucose transporter |
|
_____________161_________173\n_____________|___________|\n5'-AUG...CAUAA___________CUUAA...CAC-3'\n______________CCGAUUACGUG\n______________|||||||||||\n______________GGCUAAUGCAC\n3'-AUU...GUUUA___________UUCAU...AUG-5'\n_____________|___________|\n_____________57__________45\n |
166 -- 172 |
46 -- 52 |
-17.4041 kcal/mol |
2.44124 kcal/mol |
1.86194 kcal/mol |
161 173@LB@ | |@LB@5'-AUG...CAUAA CUUAA...CAC-3'@LB@ CCGAUUACGUG@LB@ |||||||||||@LB@ GGCUAAUGCAC@LB@3'-AUU...GUUUA UUCAU...AUG-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -17.4041 kcal/mol@LB@Unfolding Energy - mRNA 2.44124 kcal/mol@LB@Unfolding Energy - sRNA 1.86194 kcal/mol@LB@@LB@Position - mRNA 162 -- 172@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 46 -- 52@LB@ |
26 |
0.0002109 |
0.02687 |
b4122 |
fumB |
-13.50 |
0.002989 |
276 -- 286 |
47 -- 57 |
anaerobic class I fumarate hydratase (fumarase B) |
b1612 |
_____________275_________287\n_____________|___________|\n5'-UCC...UCACU___________UAGCG...ACU-3'\n______________UCCGAUUACGU\n______________|||||||||||\n______________AGGCUAAUGCA\n3'-AUU...GGUUU___________CUUCA...AUG-5'\n_____________|___________|\n_____________58__________46\n |
280 -- 286 |
47 -- 53 |
-16.5827 kcal/mol |
1.51899 kcal/mol |
1.56839 kcal/mol |
275 287@LB@ | |@LB@5'-UCC...UCACU UAGCG...ACU-3'@LB@ UCCGAUUACGU@LB@ |||||||||||@LB@ AGGCUAAUGCA@LB@3'-AUU...GGUUU CUUCA...AUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -16.5827 kcal/mol@LB@Unfolding Energy - mRNA 1.51899 kcal/mol@LB@Unfolding Energy - sRNA 1.56839 kcal/mol@LB@@LB@Position - mRNA 276 -- 286@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 47 -- 53@LB@ |
1 |
0 |
0 |
b0757 |
galK |
-15.06 |
0.000658 |
183 -- 231 |
8 -- 60 |
galactokinase |
|
_____________182_____________________________________________________232\n_____________|_______________________________________________________|\n5'-CAU...UUCGC_______GA______U___AAAU_____________AAA____CA__________UUGCC...GUG-3'\n______________GAAUCCG_____GUG_AAG____GAG_UCUGAAAGA___AACA____AUCUCUGU\n______________:||||||_____|||_|||____:||_|||||||||___||||____|:||||||\n______________UUUAGGC_____CAC_UUC____UUC_AGACUUUCU___UUGU____UGGAGACA\n3'-AUU...GUCGG_______UAAUG_______AUU____C_________AUC____AGAA________UGGGAUG-5'\n_____________|_______________________________________________________|\n_____________61______________________________________________________7\n |
225 -- 231 |
8 -- 14 |
-35.0906 kcal/mol |
7.3474 kcal/mol |
12.6967 kcal/mol |
182 232@LB@ | |@LB@5'-CAU...UUCGC GA U AAAU AAA CA UUGCC...GUG-3'@LB@ GAAUCCG GUG AAG GAG UCUGAAAGA AACA AUCUCUGU@LB@ :|||||| ||| ||| :|| ||||||||| |||| |:||||||@LB@ UUUAGGC CAC UUC UUC AGACUUUCU UUGU UGGAGACA@LB@3'-AUU...GUCGG UAAUG AUU C AUC AGAA UGGGAUG-5'@LB@ | |@LB@ 61 7@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -35.0906 kcal/mol@LB@Unfolding Energy - mRNA 7.3474 kcal/mol@LB@Unfolding Energy - sRNA 12.6967 kcal/mol@LB@@LB@Position - mRNA 183 -- 231@LB@Position - sRNA 8 -- 60@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
176 |
0.007357 |
0.147 |
b2905 |
gcvT |
-7.40 |
0.214118 |
198 -- 224 |
6 -- 30 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________197__________________________225\n_____________|____________________________|\n5'-CUG...AGGAC_______CAC____GACU__________GAACA...AAA-3'\n______________AAGAUGG___AACA_____CCUUUGUAC\n______________|||||:|___||||_____|||:|||||\n______________UUCUAUC___UUGU_____GGAGACAUG\n3'-AUU...AGACU______________AGAAU_________GGAUG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
218 -- 224 |
6 -- 12 |
-21.3805 kcal/mol |
5.97871 kcal/mol |
8.02863 kcal/mol |
197 225@LB@ | |@LB@5'-CUG...AGGAC CAC GACU GAACA...AAA-3'@LB@ AAGAUGG AACA CCUUUGUAC@LB@ |||||:| |||| |||:|||||@LB@ UUCUAUC UUGU GGAGACAUG@LB@3'-AUU...AGACU AGAAU GGAUG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -7.40 kcal/mol@LB@Hybridization Energy -21.3805 kcal/mol@LB@Unfolding Energy - mRNA 5.97871 kcal/mol@LB@Unfolding Energy - sRNA 8.02863 kcal/mol@LB@@LB@Position - mRNA 198 -- 224@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 6 -- 12@LB@ |
15 |
5.569e-05 |
0.01183 |
b1761 |
gdhA |
-12.26 |
0.008568 |
280 -- 294 |
40 -- 56 |
glutamate dehydrogenase NADP-specific |
|
_____________279_______________295\n_____________|_________________|\n5'-UAA...GCAAG___UU____________UGACCA-3'\n______________CCG____CGUGAAGUAA\n______________|||____||||||||||\n______________GGC____GCACUUCAUU\n3'-AUU...GUUUA___UAAU__________UUCCA...AUG-5'\n_____________|_________________|\n_____________57________________39\n |
288 -- 294 |
40 -- 46 |
-17.1153 kcal/mol |
1.5283 kcal/mol |
3.34823 kcal/mol |
279 295@LB@ | |@LB@5'-UAA...GCAAG UU UGACCA-3'@LB@ CCG CGUGAAGUAA@LB@ ||| ||||||||||@LB@ GGC GCACUUCAUU@LB@3'-AUU...GUUUA UAAU UUCCA...AUG-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -17.1153 kcal/mol@LB@Unfolding Energy - mRNA 1.5283 kcal/mol@LB@Unfolding Energy - sRNA 3.34823 kcal/mol@LB@@LB@Position - mRNA 280 -- 294@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 40 -- 46@LB@ |
48 |
0.0005438 |
0.03933 |
b0811 |
glnH |
-6.95 |
0.268265 |
70 -- 77 |
1 -- 8 |
glutamine transporter subunit |
|
_____________69_______78\n_____________|________|\n5'-AUC...GGUAU________AAAUC...CCG-3'\n______________UGCCCUAU\n______________|:|||||:\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
71 -- 77 |
1 -- 7 |
-10.5963 kcal/mol |
1.549 kcal/mol |
2.11603 kcal/mol |
69 78@LB@ | |@LB@5'-AUC...GGUAU AAAUC...CCG-3'@LB@ UGCCCUAU@LB@ |:|||||:@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -6.95 kcal/mol@LB@Hybridization Energy -10.5963 kcal/mol@LB@Unfolding Energy - mRNA 1.549 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 70 -- 77@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 1 -- 7@LB@ |
165 |
0.006672 |
0.1423 |
b1651 |
gloA |
-7.94 |
0.160716 |
101 -- 108 |
49 -- 56 |
glyoxalase I Ni-dependent |
|
_____________100______109\n_____________|________|\n5'-UGG...CUAUA________CCGAC...AAA-3'\n______________CCGAUUAC\n______________||||||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
102 -- 108 |
49 -- 55 |
-10.6899 kcal/mol |
2.44421 kcal/mol |
0.317884 kcal/mol |
100 109@LB@ | |@LB@5'-UGG...CUAUA CCGAC...AAA-3'@LB@ CCGAUUAC@LB@ ||||||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -7.94 kcal/mol@LB@Hybridization Energy -10.6899 kcal/mol@LB@Unfolding Energy - mRNA 2.44421 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 101 -- 108@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 49 -- 55@LB@ |
148 |
0.00596 |
0.1406 |
b3426 |
glpD |
-7.81 |
0.172743 |
213 -- 222 |
50 -- 59 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________212________223\n_____________|__________|\n5'-AAC...CCAAA__________UGAUA...AGG-3'\n______________GAUCUGAUUG\n______________:|||:||||:\n______________UUAGGCUAAU\n3'-AUU...UCGGU__________GCACU...AUG-5'\n_____________|__________|\n_____________60_________49\n |
216 -- 222 |
50 -- 56 |
-9.79708 kcal/mol |
1.6903 kcal/mol |
0.31771 kcal/mol |
212 223@LB@ | |@LB@5'-AAC...CCAAA UGAUA...AGG-3'@LB@ GAUCUGAUUG@LB@ :|||:||||:@LB@ UUAGGCUAAU@LB@3'-AUU...UCGGU GCACU...AUG-5'@LB@ | |@LB@ 60 49@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -9.79708 kcal/mol@LB@Unfolding Energy - mRNA 1.6903 kcal/mol@LB@Unfolding Energy - sRNA 0.31771 kcal/mol@LB@@LB@Position - mRNA 213 -- 222@LB@Position - sRNA 50 -- 59@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 50 -- 56@LB@ |
62 |
0.001059 |
0.05856 |
b3927 |
glpF |
-11.40 |
0.016677 |
192 -- 203 |
48 -- 59 |
glycerol facilitator |
|
_____________191__________204\n_____________|____________|\n5'-GAU...UUCAG____________AGUCA...AAG-3'\n______________GAUCCGAUUAUG\n______________:|||||||||:|\n______________UUAGGCUAAUGC\n3'-AUU...UCGGU____________ACUUC...AUG-5'\n_____________|____________|\n_____________60___________47\n |
197 -- 203 |
48 -- 54 |
-15.6898 kcal/mol |
2.7066 kcal/mol |
1.55995 kcal/mol |
191 204@LB@ | |@LB@5'-GAU...UUCAG AGUCA...AAG-3'@LB@ GAUCCGAUUAUG@LB@ :|||||||||:|@LB@ UUAGGCUAAUGC@LB@3'-AUU...UCGGU ACUUC...AUG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -15.6898 kcal/mol@LB@Unfolding Energy - mRNA 2.7066 kcal/mol@LB@Unfolding Energy - sRNA 1.55995 kcal/mol@LB@@LB@Position - mRNA 192 -- 203@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
7 |
1.5e-05 |
0.00754 |
b0720 |
gltA |
-8.97 |
0.087950 |
70 -- 79 |
4 -- 13 |
citrate synthase |
|
_____________69_________80\n_____________|__________|\n5'-CGG...CAGAG__________AGGUU...GUA-3'\n______________CUCUGUACCC\n______________||||||||||\n______________GAGACAUGGG\n3'-AUU...GAAUG__________AUG-5'\n_____________|__________|\n_____________14_________3\n |
73 -- 79 |
4 -- 10 |
-18.8657 kcal/mol |
4.79377 kcal/mol |
5.12835 kcal/mol |
69 80@LB@ | |@LB@5'-CGG...CAGAG AGGUU...GUA-3'@LB@ CUCUGUACCC@LB@ ||||||||||@LB@ GAGACAUGGG@LB@3'-AUU...GAAUG AUG-5'@LB@ | |@LB@ 14 3@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -18.8657 kcal/mol@LB@Unfolding Energy - mRNA 4.79377 kcal/mol@LB@Unfolding Energy - sRNA 5.12835 kcal/mol@LB@@LB@Position - mRNA 70 -- 79@LB@Position - sRNA 4 -- 13@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
188 |
0.008316 |
0.1556 |
b3406 |
greB |
-8.11 |
0.146040 |
42 -- 55 |
52 -- 65 |
transcript cleavage factor |
|
_____________41_____________56\n_____________|______________|\n5'-AUU...GUCAC______________AUGAA...UGA-3'\n______________CAGCUAAAUCUGGU\n______________||||:|||||:|:|\n______________GUCGGUUUAGGCUA\n3'-AUU...UAUAA______________AUGCA...AUG-5'\n_____________|______________|\n_____________66_____________51\n |
49 -- 55 |
52 -- 58 |
-18.5321 kcal/mol |
4.27254 kcal/mol |
6.17277 kcal/mol |
41 56@LB@ | |@LB@5'-AUU...GUCAC AUGAA...UGA-3'@LB@ CAGCUAAAUCUGGU@LB@ ||||:|||||:|:|@LB@ GUCGGUUUAGGCUA@LB@3'-AUU...UAUAA AUGCA...AUG-5'@LB@ | |@LB@ 66 51@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -18.5321 kcal/mol@LB@Unfolding Energy - mRNA 4.27254 kcal/mol@LB@Unfolding Energy - sRNA 6.17277 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 52 -- 65@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 52 -- 58@LB@ |
32 |
0.0003261 |
0.03519 |
b2789 |
gudP |
-8.38 |
0.124980 |
121 -- 127 |
1 -- 7 |
putative D-glucarate transporter |
|
_____________120_____128\n_____________|_______|\n5'-UGA...AAAAC_______GUCAC...ACG-3'\n______________ACCCUAC\n______________|||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.2076 kcal/mol |
0.809325 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UGA...AAAAC GUCAC...ACG-3'@LB@ ACCCUAC@LB@ |||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -11.2076 kcal/mol@LB@Unfolding Energy - mRNA 0.809325 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
72 |
0.001216 |
0.05856 |
b3699 |
gyrB |
-10.53 |
0.031588 |
1 -- 17 |
9 -- 25 |
DNA gyrase subunit B |
|
______________1________________18\n______________|________________|\n___________5'-___UG____________AGCUU...GCA-3'\n______________AGA__AUUUUGCCUCUG\n______________|||__||:||:||||||\n______________UCU__UAGAAUGGAGAC\n3'-AUU...UUCUA___UG____________AUGGGAUG-5'\n_____________|_________________|\n_____________26________________8\n |
11 -- 17 |
9 -- 15 |
-19.3204 kcal/mol |
1.07855 kcal/mol |
7.71376 kcal/mol |
1 18@LB@ | |@LB@ 5'- UG AGCUU...GCA-3'@LB@ AGA AUUUUGCCUCUG@LB@ ||| ||:||:||||||@LB@ UCU UAGAAUGGAGAC@LB@3'-AUU...UUCUA UG AUGGGAUG-5'@LB@ | |@LB@ 26 8@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -19.3204 kcal/mol@LB@Unfolding Energy - mRNA 1.07855 kcal/mol@LB@Unfolding Energy - sRNA 7.71376 kcal/mol@LB@@LB@Position - mRNA 1 -- 17@LB@Position - sRNA 9 -- 25@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 9 -- 15@LB@ |
166 |
0.006804 |
0.1439 |
b0475 |
hemH |
-7.56 |
0.197603 |
220 -- 228 |
1 -- 9 |
ferrochelatase |
|
_____________219_______229\n_____________|_________|\n5'-CGG...AACCG_________UGGCA...GCG-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
222 -- 228 |
1 -- 7 |
-12.5413 kcal/mol |
2.87943 kcal/mol |
2.12872 kcal/mol |
219 229@LB@ | |@LB@5'-CGG...AACCG UGGCA...GCG-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -12.5413 kcal/mol@LB@Unfolding Energy - mRNA 2.87943 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 220 -- 228@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
28 |
0.0002139 |
0.02687 |
b4174 |
hflK |
-10.82 |
0.025576 |
125 -- 140 |
42 -- 58 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________124_______________141\n_____________|_________________|\n5'-AGA...GUAGC______A__________CAUAU...GUC-3'\n______________GUCUGA__GCGUGGAGU\n______________:||:||__:||||:|||\n______________UAGGCU__UGCACUUCA\n3'-AUU...CGGUU______AA_________UUUUC...AUG-5'\n_____________|_________________|\n_____________59________________41\n |
134 -- 140 |
42 -- 48 |
-18.0833 kcal/mol |
3.99428 kcal/mol |
3.27972 kcal/mol |
124 141@LB@ | |@LB@5'-AGA...GUAGC A CAUAU...GUC-3'@LB@ GUCUGA GCGUGGAGU@LB@ :||:|| :||||:|||@LB@ UAGGCU UGCACUUCA@LB@3'-AUU...CGGUU AA UUUUC...AUG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -18.0833 kcal/mol@LB@Unfolding Energy - mRNA 3.99428 kcal/mol@LB@Unfolding Energy - sRNA 3.27972 kcal/mol@LB@@LB@Position - mRNA 125 -- 140@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 42 -- 48@LB@ |
151 |
0.006118 |
0.1406 |
b1103 |
hinT |
-6.52 |
0.328434 |
216 -- 241 |
45 -- 70 |
purine nucleoside phosphoramidase dadA activator protein |
|
_____________215________________________242\n_____________|__________________________|\n5'-CAA...AAACU_________A_____AUUCGU_____GAUCC...CGC-3'\n______________AUAUUCAGC_AAAUU______CGUGA\n______________|||||||||_||||:______|||||\n______________UAUAAGUCG_UUUAG______GCACU\n3'-AUU...GAUUU_________G_____GCUAAU_____UCAUU...AUG-5'\n_____________|__________________________|\n_____________71_________________________44\n |
218 -- 224 |
62 -- 68 |
-20.3535 kcal/mol |
5.67357 kcal/mol |
8.1779 kcal/mol |
215 242@LB@ | |@LB@5'-CAA...AAACU A AUUCGU GAUCC...CGC-3'@LB@ AUAUUCAGC AAAUU CGUGA@LB@ ||||||||| ||||: |||||@LB@ UAUAAGUCG UUUAG GCACU@LB@3'-AUU...GAUUU G GCUAAU UCAUU...AUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -6.52 kcal/mol@LB@Hybridization Energy -20.3535 kcal/mol@LB@Unfolding Energy - mRNA 5.67357 kcal/mol@LB@Unfolding Energy - sRNA 8.1779 kcal/mol@LB@@LB@Position - mRNA 216 -- 241@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 62 -- 68@LB@ |
186 |
0.008252 |
0.1556 |
b2026 |
hisI |
-8.65 |
0.106637 |
17 -- 26 |
42 -- 51 |
phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase |
|
_____________16_________27\n_____________|__________|\n5'-GAA...AAAAG__________UUGCC...UGC-3'\n______________UGCGUGAAGU\n______________|:||||||||\n______________AUGCACUUCA\n3'-AUU...GGCUA__________UUUUC...AUG-5'\n_____________|__________|\n_____________52_________41\n |
20 -- 26 |
42 -- 48 |
-13.8545 kcal/mol |
1.95631 kcal/mol |
3.26026 kcal/mol |
16 27@LB@ | |@LB@5'-GAA...AAAAG UUGCC...UGC-3'@LB@ UGCGUGAAGU@LB@ |:||||||||@LB@ AUGCACUUCA@LB@3'-AUU...GGCUA UUUUC...AUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -8.65 kcal/mol@LB@Hybridization Energy -13.8545 kcal/mol@LB@Unfolding Energy - mRNA 1.95631 kcal/mol@LB@Unfolding Energy - sRNA 3.26026 kcal/mol@LB@@LB@Position - mRNA 17 -- 26@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 42 -- 48@LB@ |
177 |
0.007672 |
0.1511 |
b2307 |
hisM |
-10.48 |
0.032509 |
175 -- 237 |
1 -- 57 |
histidine ABC transporter permease |
|
_____________174__________________________________________________________________238\n_____________|____________________________________________________________________|\n5'-CUC...GCUAC____UGGG___________________CCUGU___C___________AUGAAUA___GAA___G____UGUGG...CGG-3'\n______________UCCG____UGUGAAG___AGGG_CUGA_____GAU_GAA_AUCUUAC_______CUG___ACC_CUGC\n______________||||____:||||||___|:||_||||_____|||_|||_|||||||_______|||___|||_||:|\n______________AGGC____GCACUUC___UUCC_GACU_____CUA_CUU_UAGAAUG_______GAC___UGG_GAUG\n3'-AUU...GGUUU____UAAU_______AUU____A____UU______U___G_______GA________A__________-5'\n_____________|___________________________________________________________________|\n_____________58__________________________________________________________________1\n |
210 -- 216 |
14 -- 20 |
-38.5224 kcal/mol |
15.358 kcal/mol |
12.7026 kcal/mol |
174 238@LB@ | |@LB@5'-CUC...GCUAC UGGG CCUGU C AUGAAUA GAA G UGUGG...CGG-3'@LB@ UCCG UGUGAAG AGGG CUGA GAU GAA AUCUUAC CUG ACC CUGC@LB@ |||| :|||||| |:|| |||| ||| ||| ||||||| ||| ||| ||:|@LB@ AGGC GCACUUC UUCC GACU CUA CUU UAGAAUG GAC UGG GAUG@LB@3'-AUU...GGUUU UAAU AUU A UU U G GA A -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -38.5224 kcal/mol@LB@Unfolding Energy - mRNA 15.358 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 175 -- 237@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 14 -- 20@LB@ |
142 |
0.005204 |
0.1284 |
b3931 |
hslU |
-6.88 |
0.277791 |
3 -- 17 |
52 -- 65 |
molecular chaperone and ATPase component of HslUV protease |
|
_____________2_______________18\n_____________|_______________|\n_________5'-UG________AAA____CUUAU...ACC-3'\n______________CAGCCAGA___CGAU\n______________||||||:|___||||\n______________GUCGGUUU___GCUA\n3'-AUU...UAUAA________AG_____AUGCA...AUG-5'\n_____________|_______________|\n_____________66______________51\n |
4 -- 10 |
58 -- 64 |
-14.8174 kcal/mol |
1.78514 kcal/mol |
6.17277 kcal/mol |
2 18@LB@ | |@LB@ 5'-UG AAA CUUAU...ACC-3'@LB@ CAGCCAGA CGAU@LB@ ||||||:| ||||@LB@ GUCGGUUU GCUA@LB@3'-AUU...UAUAA AG AUGCA...AUG-5'@LB@ | |@LB@ 66 51@LB@@LB@@LB@Energy -6.88 kcal/mol@LB@Hybridization Energy -14.8174 kcal/mol@LB@Unfolding Energy - mRNA 1.78514 kcal/mol@LB@Unfolding Energy - sRNA 6.17277 kcal/mol@LB@@LB@Position - mRNA 3 -- 17@LB@Position - sRNA 52 -- 65@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 58 -- 64@LB@ |
174 |
0.007262 |
0.1466 |
b0473 |
htpG |
-8.02 |
0.153160 |
10 -- 17 |
50 -- 57 |
protein refolding molecular co-chaperone Hsp90 Hsp70-dependent; heat-shock protein; ATPase |
|
_____________9________18\n_____________|________|\n5'-UCA...GGCGU________GCGGC...GUG-3'\n______________UCCGGUUG\n______________||||:||:\n______________AGGCUAAU\n3'-AUU...GGUUU________GCACU...AUG-5'\n_____________|________|\n_____________58_______49\n |
11 -- 17 |
50 -- 56 |
-9.07782 kcal/mol |
0.753256 kcal/mol |
0.317388 kcal/mol |
9 18@LB@ | |@LB@5'-UCA...GGCGU GCGGC...GUG-3'@LB@ UCCGGUUG@LB@ ||||:||:@LB@ AGGCUAAU@LB@3'-AUU...GGUUU GCACU...AUG-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -9.07782 kcal/mol@LB@Unfolding Energy - mRNA 0.753256 kcal/mol@LB@Unfolding Energy - sRNA 0.317388 kcal/mol@LB@@LB@Position - mRNA 10 -- 17@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 50 -- 56@LB@ |
108 |
0.003398 |
0.1101 |
b0973 |
hyaB |
-11.40 |
0.016694 |
267 -- 275 |
48 -- 56 |
hydrogenase 1 large subunit |
|
_____________266_______276\n_____________|_________|\n5'-GGU...UCGAC_________CGCAU...GCG-3'\n______________CCGAUUACG\n______________|||||||||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
269 -- 275 |
48 -- 54 |
-14.3171 kcal/mol |
1.33562 kcal/mol |
1.55919 kcal/mol |
266 276@LB@ | |@LB@5'-GGU...UCGAC CGCAU...GCG-3'@LB@ CCGAUUACG@LB@ |||||||||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -14.3171 kcal/mol@LB@Unfolding Energy - mRNA 1.33562 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 267 -- 275@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 48 -- 54@LB@ |
183 |
0.007903 |
0.1519 |
b2725 |
hycA |
-8.51 |
0.115738 |
229 -- 236 |
49 -- 56 |
regulator of the transcriptional regulator FhlA |
|
_____________228______237\n_____________|________|\n5'-UUA...GAAAG________AUCGC...AGG-3'\n______________CCGAUUAC\n______________||||||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
230 -- 236 |
49 -- 55 |
-10.9203 kcal/mol |
2.09518 kcal/mol |
0.317884 kcal/mol |
228 237@LB@ | |@LB@5'-UUA...GAAAG AUCGC...AGG-3'@LB@ CCGAUUAC@LB@ ||||||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -10.9203 kcal/mol@LB@Unfolding Energy - mRNA 2.09518 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 229 -- 236@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 49 -- 55@LB@ |
36 |
0.0003681 |
0.03584 |
b1136 |
icd |
-11.32 |
0.017792 |
275 -- 286 |
49 -- 60 |
isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
|
_____________274__________287\n_____________|____________|\n5'-GUA...CCUGA____________CCCUU...AAG-3'\n______________AAAUCCGAUUAU\n______________|||||||||||:\n______________UUUAGGCUAAUG\n3'-AUU...GUCGG____________CACUU...AUG-5'\n_____________|____________|\n_____________61___________48\n |
280 -- 286 |
49 -- 55 |
-13.1162 kcal/mol |
1.49253 kcal/mol |
0.319946 kcal/mol |
274 287@LB@ | |@LB@5'-GUA...CCUGA CCCUU...AAG-3'@LB@ AAAUCCGAUUAU@LB@ |||||||||||:@LB@ UUUAGGCUAAUG@LB@3'-AUU...GUCGG CACUU...AUG-5'@LB@ | |@LB@ 61 48@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -13.1162 kcal/mol@LB@Unfolding Energy - mRNA 1.49253 kcal/mol@LB@Unfolding Energy - sRNA 0.319946 kcal/mol@LB@@LB@Position - mRNA 275 -- 286@LB@Position - sRNA 49 -- 60@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 49 -- 55@LB@ |
162 |
0.006534 |
0.1413 |
b3771 |
ilvD |
-6.87 |
0.280008 |
44 -- 51 |
49 -- 56 |
dihydroxyacid dehydratase |
|
_____________43_______52\n_____________|________|\n5'-GCG...GUGGC________CAAAC...GUA-3'\n______________CCGGUUAC\n______________|||:||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
45 -- 51 |
49 -- 55 |
-9.72973 kcal/mol |
2.55538 kcal/mol |
0.317884 kcal/mol |
43 52@LB@ | |@LB@5'-GCG...GUGGC CAAAC...GUA-3'@LB@ CCGGUUAC@LB@ |||:||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -6.87 kcal/mol@LB@Hybridization Energy -9.72973 kcal/mol@LB@Unfolding Energy - mRNA 2.55538 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 44 -- 51@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 49 -- 55@LB@ |
136 |
0.004892 |
0.1265 |
b2349 |
intS |
-8.19 |
0.139381 |
273 -- 281 |
3 -- 11 |
CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase |
|
_____________272_______282\n_____________|_________|\n5'-AAG...AUGGC_________UAUGU...GGA-3'\n______________CUGUACCUU\n______________|||||||:|\n______________GACAUGGGA\n3'-AUU...AUGGA_________UG-5'\n_____________|_________|\n_____________12________2\n |
275 -- 281 |
3 -- 9 |
-13.0022 kcal/mol |
1.37836 kcal/mol |
3.45478 kcal/mol |
272 282@LB@ | |@LB@5'-AAG...AUGGC UAUGU...GGA-3'@LB@ CUGUACCUU@LB@ |||||||:|@LB@ GACAUGGGA@LB@3'-AUU...AUGGA UG-5'@LB@ | |@LB@ 12 2@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -13.0022 kcal/mol@LB@Unfolding Energy - mRNA 1.37836 kcal/mol@LB@Unfolding Energy - sRNA 3.45478 kcal/mol@LB@@LB@Position - mRNA 273 -- 281@LB@Position - sRNA 3 -- 11@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 3 -- 9@LB@ |
180 |
0.007734 |
0.1511 |
b3617 |
kbl |
-7.53 |
0.200168 |
193 -- 210 |
43 -- 60 |
glycine C-acetyltransferase |
|
_____________192________________211\n_____________|__________________|\n5'-UUU...CUGGA_____GCAA_________AAUUU...AAG-3'\n______________GAAUC____UGCGUGGAG\n______________:||||____|:||||:||\n______________UUUAG____AUGCACUUC\n3'-AUU...GUCGG_____GCUA_________AUUUU...AUG-5'\n_____________|__________________|\n_____________61_________________42\n |
204 -- 210 |
43 -- 49 |
-15.3085 kcal/mol |
4.51554 kcal/mol |
3.27548 kcal/mol |
192 211@LB@ | |@LB@5'-UUU...CUGGA GCAA AAUUU...AAG-3'@LB@ GAAUC UGCGUGGAG@LB@ :|||| |:||||:||@LB@ UUUAG AUGCACUUC@LB@3'-AUU...GUCGG GCUA AUUUU...AUG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -15.3085 kcal/mol@LB@Unfolding Energy - mRNA 4.51554 kcal/mol@LB@Unfolding Energy - sRNA 3.27548 kcal/mol@LB@@LB@Position - mRNA 193 -- 210@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 43 -- 49@LB@ |
16 |
5.617e-05 |
0.01183 |
b0116 |
lpd |
-12.59 |
0.006546 |
264 -- 293 |
29 -- 63 |
dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
|
_____________263__________________________________294\n_____________|____________________________________|\n5'-CCG...CCGCU___U____________C___UUU_____________ACCGUAA-3'\n______________GCC___UCCG_UUGCG_UGA______AGGUCUGGAA\n______________|||___||||_||:||_|||______|||||||:||\n______________CGG___AGGC_AAUGC_ACU______UCCAGACUUU\n3'-AUU...UAAGU___UUU____U_________UCAUUU__________CUAUC...AUG-5'\n_____________|____________________________________|\n_____________64___________________________________28\n |
286 -- 292 |
30 -- 36 |
-30.8342 kcal/mol |
7.36676 kcal/mol |
10.8887 kcal/mol |
263 294@LB@ | |@LB@5'-CCG...CCGCU U C UUU ACCGUAA-3'@LB@ GCC UCCG UUGCG UGA AGGUCUGGAA@LB@ ||| |||| ||:|| ||| |||||||:||@LB@ CGG AGGC AAUGC ACU UCCAGACUUU@LB@3'-AUU...UAAGU UUU U UCAUUU CUAUC...AUG-5'@LB@ | |@LB@ 64 28@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -30.8342 kcal/mol@LB@Unfolding Energy - mRNA 7.36676 kcal/mol@LB@Unfolding Energy - sRNA 10.8887 kcal/mol@LB@@LB@Position - mRNA 264 -- 293@LB@Position - sRNA 29 -- 63@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 30 -- 36@LB@ |
193 |
0.008653 |
0.1558 |
b1677 |
lpp |
-9.16 |
0.078007 |
273 -- 298 |
53 -- 76 |
murein lipoprotein |
|
_____________272________________________299\n_____________|__________________________|\n5'-UCA...GCAAC________CGA______GUCU_____CG-3'\n______________GCUAAAAU___UCAGCU____UCUGA\n______________||||||||___|||||:____||:||\n______________CGAUUUUA___AGUCGG____AGGCU\n3'-AUU...CCCGC________UA_______UUU______AAUGC...AUG-5'\n_____________|__________________________|\n_____________77_________________________52\n |
273 -- 279 |
70 -- 76 |
-19.09 kcal/mol |
3.58418 kcal/mol |
6.36489 kcal/mol |
272 299@LB@ | |@LB@5'-UCA...GCAAC CGA GUCU CG-3'@LB@ GCUAAAAU UCAGCU UCUGA@LB@ |||||||| |||||: ||:||@LB@ CGAUUUUA AGUCGG AGGCU@LB@3'-AUU...CCCGC UA UUU AAUGC...AUG-5'@LB@ | |@LB@ 77 52@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -19.09 kcal/mol@LB@Unfolding Energy - mRNA 3.58418 kcal/mol@LB@Unfolding Energy - sRNA 6.36489 kcal/mol@LB@@LB@Position - mRNA 273 -- 298@LB@Position - sRNA 53 -- 76@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 70 -- 76@LB@ |
82 |
0.001877 |
0.08053 |
b3199 |
lptC |
-13.73 |
0.002422 |
95 -- 106 |
45 -- 56 |
periplasmic membrane-anchored LPS-binding protein; LPS export protein |
|
_____________94___________107\n_____________|____________|\n5'-UAU...GCGCG____________CGCGC...UGG-3'\n______________CCGAUUACGUGA\n______________||||||||||||\n______________GGCUAAUGCACU\n3'-AUU...GUUUA____________UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
100 -- 106 |
45 -- 51 |
-18.6784 kcal/mol |
2.68909 kcal/mol |
2.27945 kcal/mol |
94 107@LB@ | |@LB@5'-UAU...GCGCG CGCGC...UGG-3'@LB@ CCGAUUACGUGA@LB@ ||||||||||||@LB@ GGCUAAUGCACU@LB@3'-AUU...GUUUA UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -18.6784 kcal/mol@LB@Unfolding Energy - mRNA 2.68909 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 95 -- 106@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 45 -- 51@LB@ |
127 |
0.004255 |
0.1179 |
b2838 |
lysA |
-9.87 |
0.049362 |
214 -- 233 |
52 -- 69 |
diaminopimelate decarboxylase PLP-binding |
|
_____________213__________________234\n_____________|____________________|\n5'-GGU...UUCAC________A_C___A_____CUCAC...CGC-3'\n______________UGUUCAGC_C_GAU_CCGAU\n______________|:||||||_|_:||_|||||\n______________AUAAGUCG_G_UUA_GGCUA\n3'-AUU...AUUUU__________U_________AUGCA...AUG-5'\n_____________|____________________|\n_____________70___________________51\n |
215 -- 221 |
62 -- 68 |
-18.1264 kcal/mol |
2.0842 kcal/mol |
6.19243 kcal/mol |
213 234@LB@ | |@LB@5'-GGU...UUCAC A C A CUCAC...CGC-3'@LB@ UGUUCAGC C GAU CCGAU@LB@ |:|||||| | :|| |||||@LB@ AUAAGUCG G UUA GGCUA@LB@3'-AUU...AUUUU U AUGCA...AUG-5'@LB@ | |@LB@ 70 51@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -18.1264 kcal/mol@LB@Unfolding Energy - mRNA 2.0842 kcal/mol@LB@Unfolding Energy - sRNA 6.19243 kcal/mol@LB@@LB@Position - mRNA 214 -- 233@LB@Position - sRNA 52 -- 69@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 62 -- 68@LB@ |
79 |
0.001698 |
0.07533 |
b2890 |
lysS |
-8.16 |
0.142186 |
53 -- 64 |
54 -- 65 |
lysine tRNA synthetase constitutive |
b4129 |
_____________52___________65\n_____________|____________|\n5'-AAA...UGGGG____________UUCUU...GGA-3'\n______________CAGCCAGAUUCG\n______________||||||:||:||\n______________GUCGGUUUAGGC\n3'-AUU...UAUAA____________UAAUG...AUG-5'\n_____________|____________|\n_____________66___________53\n |
58 -- 64 |
54 -- 60 |
-18.439 kcal/mol |
4.14677 kcal/mol |
6.15795 kcal/mol |
52 65@LB@ | |@LB@5'-AAA...UGGGG UUCUU...GGA-3'@LB@ CAGCCAGAUUCG@LB@ ||||||:||:||@LB@ GUCGGUUUAGGC@LB@3'-AUU...UAUAA UAAUG...AUG-5'@LB@ | |@LB@ 66 53@LB@@LB@@LB@Energy -8.16 kcal/mol@LB@Hybridization Energy -18.439 kcal/mol@LB@Unfolding Energy - mRNA 4.14677 kcal/mol@LB@Unfolding Energy - sRNA 6.15795 kcal/mol@LB@@LB@Position - mRNA 53 -- 64@LB@Position - sRNA 54 -- 65@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 54 -- 60@LB@ |
126 |
0.00422 |
0.1178 |
b1621 |
malX |
-14.96 |
0.000732 |
43 -- 87 |
1 -- 56 |
maltose and glucose-specific PTS enzyme IIB component and IIC component |
|
_____________42__________________________________________________________88\n_____________|___________________________________________________________|\n5'-AUG...ACUCC____________C___________________A______________UAUU________ACCCG...GCA-3'\n______________CUGAUUAUGUGA_______________AGAUA_AACGUUUUACCUUU____UAUCUUAU\n______________|:|||||:||||_______________|||||_|||:|:||||||:|____||:|:||:\n______________GGCUAAUGCACU_______________UCUAU_UUGUAGAAUGGAGA____AUGGGAUG\n3'-AUU...GUUUA____________UCAUUUUCCAGACUU_____C______________C___________-5'\n_____________|__________________________________________________________|\n_____________57_________________________________________________________1\n |
81 -- 87 |
1 -- 7 |
-37.7188 kcal/mol |
10.08 kcal/mol |
12.7022 kcal/mol |
42 88@LB@ | |@LB@5'-AUG...ACUCC C A UAUU ACCCG...GCA-3'@LB@ CUGAUUAUGUGA AGAUA AACGUUUUACCUUU UAUCUUAU@LB@ |:|||||:|||| ||||| |||:|:||||||:| ||:|:||:@LB@ GGCUAAUGCACU UCUAU UUGUAGAAUGGAGA AUGGGAUG@LB@3'-AUU...GUUUA UCAUUUUCCAGACUU C C -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -37.7188 kcal/mol@LB@Unfolding Energy - mRNA 10.08 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 43 -- 87@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 1 -- 7@LB@ |
43 |
0.0004631 |
0.03766 |
b4346 |
mcrB |
-12.47 |
0.007188 |
270 -- 300 |
1 -- 31 |
5-methylcytosine-specific restriction enzyme McrBC subunit McrB |
|
_____________269_______________________________300\n_____________|_________________________________|\n5'-UUU...CCACU______UAUCC_________________A_____-3'\n______________AAAGAU_____AACGUCUUACC___GUA_CCUGC\n______________||||||_____|||:|||||||___|||_|||:|\n______________UUUCUA_____UUGUAGAAUGG___CAU_GGAUG\n3'-AUU...CAGAC______UC______________AGA___G_____-5'\n_____________|_________________________________|\n_____________32________________________________1\n |
285 -- 291 |
13 -- 19 |
-24.3421 kcal/mol |
3.83264 kcal/mol |
8.05889 kcal/mol |
269 300@LB@ | |@LB@5'-UUU...CCACU UAUCC A -3'@LB@ AAAGAU AACGUCUUACC GUA CCUGC@LB@ |||||| |||:||||||| ||| |||:|@LB@ UUUCUA UUGUAGAAUGG CAU GGAUG@LB@3'-AUU...CAGAC UC AGA G -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -24.3421 kcal/mol@LB@Unfolding Energy - mRNA 3.83264 kcal/mol@LB@Unfolding Energy - sRNA 8.05889 kcal/mol@LB@@LB@Position - mRNA 270 -- 300@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 13 -- 19@LB@ |
63 |
0.001074 |
0.05856 |
b0448 |
mdlA |
-11.87 |
0.011698 |
129 -- 162 |
4 -- 28 |
putative multidrug ABC transporter ATPase |
|
_____________128________________________________163\n_____________|__________________________________|\n5'-UGG...UUCGC_________GA__AAAUACACC______U_____AUCGA...UGG-3'\n______________GAUGGAACA__UU_________ACUUCU_UACCC\n______________|||:|||||__||_________||:|||_|||||\n______________CUAUCUUGU__AA_________UGGAGA_AUGGG\n3'-AUU...ACUUU_________AG_________________C_____AUG-5'\n_____________|__________________________________|\n_____________29_________________________________3\n |
131 -- 137 |
20 -- 26 |
-24.4185 kcal/mol |
4.52675 kcal/mol |
8.04825 kcal/mol |
128 163@LB@ | |@LB@5'-UGG...UUCGC GA AAAUACACC U AUCGA...UGG-3'@LB@ GAUGGAACA UU ACUUCU UACCC@LB@ |||:||||| || ||:||| |||||@LB@ CUAUCUUGU AA UGGAGA AUGGG@LB@3'-AUU...ACUUU AG C AUG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -24.4185 kcal/mol@LB@Unfolding Energy - mRNA 4.52675 kcal/mol@LB@Unfolding Energy - sRNA 8.04825 kcal/mol@LB@@LB@Position - mRNA 129 -- 162@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 20 -- 26@LB@ |
92 |
0.002567 |
0.09816 |
b4120 |
melB |
-8.04 |
0.151444 |
195 -- 202 |
1 -- 8 |
melibiose:sodium symporter |
|
_____________194______203\n_____________|________|\n5'-AUA...CCCGA________GAGCA...ACA-3'\n______________UACCCUAU\n______________|||||||:\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
196 -- 202 |
1 -- 7 |
-10.9179 kcal/mol |
0.779946 kcal/mol |
2.11603 kcal/mol |
194 203@LB@ | |@LB@5'-AUA...CCCGA GAGCA...ACA-3'@LB@ UACCCUAU@LB@ |||||||:@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.04 kcal/mol@LB@Hybridization Energy -10.9179 kcal/mol@LB@Unfolding Energy - mRNA 0.779946 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 195 -- 202@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 1 -- 7@LB@ |
134 |
0.004727 |
0.1241 |
b1655 |
mepH |
-9.70 |
0.055155 |
231 -- 243 |
1 -- 13 |
murein DD-endopeptidase space-maker hydrolase |
|
_____________230___________244\n_____________|_____________|\n5'-CGU...UCACG_____________UUUUU...AGA-3'\n______________CUCUGUGCUUUAC\n______________||||||:|::|||\n______________GAGACAUGGGAUG\n3'-AUU...GAAUG_____________-5'\n_____________|____________|\n_____________14___________1\n |
237 -- 243 |
1 -- 7 |
-18.9465 kcal/mol |
4.13106 kcal/mol |
5.13393 kcal/mol |
230 244@LB@ | |@LB@5'-CGU...UCACG UUUUU...AGA-3'@LB@ CUCUGUGCUUUAC@LB@ ||||||:|::|||@LB@ GAGACAUGGGAUG@LB@3'-AUU...GAAUG -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -18.9465 kcal/mol@LB@Unfolding Energy - mRNA 4.13106 kcal/mol@LB@Unfolding Energy - sRNA 5.13393 kcal/mol@LB@@LB@Position - mRNA 231 -- 243@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 1 -- 7@LB@ |
122 |
0.004081 |
0.1177 |
b3940 |
metL |
-10.48 |
0.032541 |
261 -- 280 |
41 -- 59 |
Bifunctional aspartokinase/homoserine dehydrogenase 2 |
|
_____________260__________________281\n_____________|____________________|\n5'-ACG...GCAGU_______CUG__________UUAUU...GCA-3'\n______________AGUCUGG___AUGUGAAGUG\n______________|:||:|:___|:|||||||:\n______________UUAGGCU___UGCACUUCAU\n3'-AUU...UCGGU_______AA___________UUUCC...AUG-5'\n_____________|____________________|\n_____________60___________________40\n |
274 -- 280 |
41 -- 47 |
-17.3741 kcal/mol |
3.59224 kcal/mol |
3.31634 kcal/mol |
260 281@LB@ | |@LB@5'-ACG...GCAGU CUG UUAUU...GCA-3'@LB@ AGUCUGG AUGUGAAGUG@LB@ |:||:|: |:|||||||:@LB@ UUAGGCU UGCACUUCAU@LB@3'-AUU...UCGGU AA UUUCC...AUG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -17.3741 kcal/mol@LB@Unfolding Energy - mRNA 3.59224 kcal/mol@LB@Unfolding Energy - sRNA 3.31634 kcal/mol@LB@@LB@Position - mRNA 261 -- 280@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 41 -- 47@LB@ |
58 |
0.000878 |
0.0531 |
b2150 |
mglB |
-10.24 |
0.038484 |
153 -- 179 |
1 -- 24 |
methyl-galactoside transporter subunit |
|
_____________152__________________________180\n_____________|____________________________|\n5'-GUA...CCGCC______________AAGCAC________AUAAG...AUA-3'\n______________GAGCAUU_UAUCUC______UACCCUGC\n______________||:|||:_||:|||______||||||:|\n______________CUUGUAG_AUGGAG______AUGGGAUG\n3'-AUU...UCUAU_______A______AC____________-5'\n_____________|___________________________|\n_____________25__________________________1\n |
173 -- 179 |
1 -- 7 |
-24.5136 kcal/mol |
6.27388 kcal/mol |
8.02158 kcal/mol |
152 180@LB@ | |@LB@5'-GUA...CCGCC AAGCAC AUAAG...AUA-3'@LB@ GAGCAUU UAUCUC UACCCUGC@LB@ ||:|||: ||:||| ||||||:|@LB@ CUUGUAG AUGGAG AUGGGAUG@LB@3'-AUU...UCUAU A AC -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -24.5136 kcal/mol@LB@Unfolding Energy - mRNA 6.27388 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 153 -- 179@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
159 |
0.006413 |
0.1413 |
b4242 |
mgtA |
-7.15 |
0.243258 |
247 -- 262 |
45 -- 58 |
magnesium transporter |
|
_____________246______________263\n_____________|________________|\n5'-GGU...UUCCC________CAU_____UCCAU...UGG-3'\n______________GUCUGGUU___CGUGA\n______________:||:|:||___|||||\n______________UAGGCUAA___GCACU\n3'-AUU...CGGUU________U_______UCAUU...AUG-5'\n_____________|________________|\n_____________59_______________44\n |
248 -- 254 |
51 -- 57 |
-12.639 kcal/mol |
3.2244 kcal/mol |
2.28003 kcal/mol |
246 263@LB@ | |@LB@5'-GGU...UUCCC CAU UCCAU...UGG-3'@LB@ GUCUGGUU CGUGA@LB@ :||:|:|| |||||@LB@ UAGGCUAA GCACU@LB@3'-AUU...CGGUU U UCAUU...AUG-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -12.639 kcal/mol@LB@Unfolding Energy - mRNA 3.2244 kcal/mol@LB@Unfolding Energy - sRNA 2.28003 kcal/mol@LB@@LB@Position - mRNA 247 -- 262@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 51 -- 57@LB@ |
100 |
0.003115 |
0.1096 |
b0353 |
mhpT |
-8.28 |
0.132596 |
137 -- 146 |
48 -- 57 |
3-hydroxyphenylpropionic transporter |
|
_____________136________147\n_____________|__________|\n5'-CGG...AUAGU__________CGGCU...CGG-3'\n______________UCUGAUUACG\n______________||:|||||||\n______________AGGCUAAUGC\n3'-AUU...GGUUU__________ACUUC...AUG-5'\n_____________|__________|\n_____________58_________47\n |
140 -- 146 |
48 -- 54 |
-13.4725 kcal/mol |
3.61374 kcal/mol |
1.55976 kcal/mol |
136 147@LB@ | |@LB@5'-CGG...AUAGU CGGCU...CGG-3'@LB@ UCUGAUUACG@LB@ ||:|||||||@LB@ AGGCUAAUGC@LB@3'-AUU...GGUUU ACUUC...AUG-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -8.28 kcal/mol@LB@Hybridization Energy -13.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.61374 kcal/mol@LB@Unfolding Energy - sRNA 1.55976 kcal/mol@LB@@LB@Position - mRNA 137 -- 146@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 48 -- 54@LB@ |
197 |
0.00873 |
0.1558 |
b2324 |
mnmC |
-9.11 |
0.080832 |
111 -- 120 |
52 -- 61 |
fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme |
|
_____________110________121\n_____________|__________|\n5'-GCU...CCGAA__________CAGCC...ACG-3'\n______________CAAGUCCGAU\n______________|||:||||||\n______________GUUUAGGCUA\n3'-AUU...AGUCG__________AUGCA...AUG-5'\n_____________|__________|\n_____________62_________51\n |
114 -- 120 |
52 -- 58 |
-12.6788 kcal/mol |
1.38997 kcal/mol |
2.20422 kcal/mol |
110 121@LB@ | |@LB@5'-GCU...CCGAA CAGCC...ACG-3'@LB@ CAAGUCCGAU@LB@ |||:||||||@LB@ GUUUAGGCUA@LB@3'-AUU...AGUCG AUGCA...AUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -12.6788 kcal/mol@LB@Unfolding Energy - mRNA 1.38997 kcal/mol@LB@Unfolding Energy - sRNA 2.20422 kcal/mol@LB@@LB@Position - mRNA 111 -- 120@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
125 |
0.004186 |
0.1178 |
b0781 |
moaA |
-8.90 |
0.091954 |
79 -- 99 |
4 -- 23 |
molybdopterin biosynthesis protein A |
|
_____________78____________________100\n_____________|_____________________|\n5'-ACG...CACUA____C___A_______C____GGGUC...CGG-3'\n______________AACA_UCU_GCCUCUG_ACCU\n______________||||_|||_:||||||_|||:\n______________UUGU_AGA_UGGAGAC_UGGG\n3'-AUU...CUAUC________A_______A____AUG-5'\n_____________|_____________________|\n_____________24____________________3\n |
88 -- 94 |
9 -- 15 |
-21.7522 kcal/mol |
4.86496 kcal/mol |
8.01134 kcal/mol |
78 100@LB@ | |@LB@5'-ACG...CACUA C A C GGGUC...CGG-3'@LB@ AACA UCU GCCUCUG ACCU@LB@ |||| ||| :|||||| |||:@LB@ UUGU AGA UGGAGAC UGGG@LB@3'-AUU...CUAUC A A AUG-5'@LB@ | |@LB@ 24 3@LB@@LB@@LB@Energy -8.90 kcal/mol@LB@Hybridization Energy -21.7522 kcal/mol@LB@Unfolding Energy - mRNA 4.86496 kcal/mol@LB@Unfolding Energy - sRNA 8.01134 kcal/mol@LB@@LB@Position - mRNA 79 -- 99@LB@Position - sRNA 4 -- 23@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 9 -- 15@LB@ |
187 |
0.008276 |
0.1556 |
b0827 |
moeA |
-6.51 |
0.330510 |
82 -- 91 |
23 -- 32 |
molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
|
_____________81_________92\n_____________|__________|\n5'-AUU...AUAUA__________UAUGG...UAC-3'\n______________GAAAGAUGGA\n______________|||||||:||\n______________CUUUCUAUCU\n3'-AUU...CCAGA__________UGUAG...AUG-5'\n_____________|__________|\n_____________33_________22\n |
85 -- 91 |
23 -- 29 |
-12.1772 kcal/mol |
2.37895 kcal/mol |
3.23951 kcal/mol |
81 92@LB@ | |@LB@5'-AUU...AUAUA UAUGG...UAC-3'@LB@ GAAAGAUGGA@LB@ |||||||:||@LB@ CUUUCUAUCU@LB@3'-AUU...CCAGA UGUAG...AUG-5'@LB@ | |@LB@ 33 22@LB@@LB@@LB@Energy -6.51 kcal/mol@LB@Hybridization Energy -12.1772 kcal/mol@LB@Unfolding Energy - mRNA 2.37895 kcal/mol@LB@Unfolding Energy - sRNA 3.23951 kcal/mol@LB@@LB@Position - mRNA 82 -- 91@LB@Position - sRNA 23 -- 32@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 23 -- 29@LB@ |
40 |
0.0004513 |
0.03766 |
b3291 |
mscL |
-6.99 |
0.263134 |
48 -- 58 |
55 -- 65 |
mechanosensitive channel protein high conductance |
|
_____________47__________59\n_____________|___________|\n5'-UGU...UCUUC________C__UUUCU...UCU-3'\n______________CAGCCAAG_CC\n______________|||||||:_||\n______________GUCGGUUU_GG\n3'-AUU...UAUAA________A__CUAAU...AUG-5'\n_____________|___________|\n_____________66__________54\n |
49 -- 55 |
58 -- 64 |
-14.9389 kcal/mol |
1.90813 kcal/mol |
6.05961 kcal/mol |
47 59@LB@ | |@LB@5'-UGU...UCUUC C UUUCU...UCU-3'@LB@ CAGCCAAG CC@LB@ |||||||: ||@LB@ GUCGGUUU GG@LB@3'-AUU...UAUAA A CUAAU...AUG-5'@LB@ | |@LB@ 66 54@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -14.9389 kcal/mol@LB@Unfolding Energy - mRNA 1.90813 kcal/mol@LB@Unfolding Energy - sRNA 6.05961 kcal/mol@LB@@LB@Position - mRNA 48 -- 58@LB@Position - sRNA 55 -- 65@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 58 -- 64@LB@ |
10 |
2.605e-05 |
0.009165 |
b3599 |
mtlA |
-16.58 |
0.000118 |
1 -- 31 |
4 -- 28 |
mannitol-specific PTS enzyme: IIA IIB and IIC components |
|
______________1_______________________________32\n______________|_______________________________|\n___________5'-___________ACGUCAA________C_____CCUAU...UCA-3'\n______________GAU_GAACGUC_______UUACCUCU_UACCC\n______________|||_||||:||_______||||||||_|||||\n______________CUA_CUUGUAG_______AAUGGAGA_AUGGG\n3'-AUU...ACUUU___U______________________C_____AUG-5'\n_____________|________________________________|\n_____________29_______________________________3\n |
19 -- 25 |
10 -- 16 |
-27.7982 kcal/mol |
3.19385 kcal/mol |
8.04825 kcal/mol |
1 32@LB@ | |@LB@ 5'- ACGUCAA C CCUAU...UCA-3'@LB@ GAU GAACGUC UUACCUCU UACCC@LB@ ||| ||||:|| |||||||| |||||@LB@ CUA CUUGUAG AAUGGAGA AUGGG@LB@3'-AUU...ACUUU U C AUG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -27.7982 kcal/mol@LB@Unfolding Energy - mRNA 3.19385 kcal/mol@LB@Unfolding Energy - sRNA 8.04825 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 10 -- 16@LB@ |
51 |
0.0006491 |
0.04477 |
b3224 |
nanT |
-16.25 |
0.000177 |
140 -- 151 |
1 -- 12 |
sialic acid transporter |
b4279 |
_____________139__________152\n_____________|____________|\n5'-CGC...ACGCA____________AAUUU...GUU-3'\n______________UCUGUACCCUAC\n______________||||||||||||\n______________AGACAUGGGAUG\n3'-AUU...AAUGG____________-5'\n_____________|___________|\n_____________13__________1\n |
145 -- 151 |
1 -- 7 |
-21.6524 kcal/mol |
1.93745 kcal/mol |
3.49051 kcal/mol |
139 152@LB@ | |@LB@5'-CGC...ACGCA AAUUU...GUU-3'@LB@ UCUGUACCCUAC@LB@ ||||||||||||@LB@ AGACAUGGGAUG@LB@3'-AUU...AAUGG -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -16.25 kcal/mol@LB@Hybridization Energy -21.6524 kcal/mol@LB@Unfolding Energy - mRNA 1.93745 kcal/mol@LB@Unfolding Energy - sRNA 3.49051 kcal/mol@LB@@LB@Position - mRNA 140 -- 151@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 1 -- 7@LB@ |
93 |
0.002634 |
0.09947 |
b2202 |
napC |
-9.04 |
0.084220 |
177 -- 197 |
34 -- 54 |
quinol dehydrogenase electron source for NapAB |
|
_____________176___________________198\n_____________|_____________________|\n5'-ACG...CAAAA_______G___A_________AUUAU...GUU-3'\n______________GGUUACG_GAA_UAAGAGGUU\n______________|:|||||_|||_|||:||||:\n______________CUAAUGC_CUU_AUUUUCCAG\n3'-AUU...UUAGG_______A___C_________ACUUU...AUG-5'\n_____________|_____________________|\n_____________55____________________33\n |
177 -- 183 |
48 -- 54 |
-21.2793 kcal/mol |
4.43682 kcal/mol |
7.71857 kcal/mol |
176 198@LB@ | |@LB@5'-ACG...CAAAA G A AUUAU...GUU-3'@LB@ GGUUACG GAA UAAGAGGUU@LB@ |:||||| ||| |||:||||:@LB@ CUAAUGC CUU AUUUUCCAG@LB@3'-AUU...UUAGG A C ACUUU...AUG-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -21.2793 kcal/mol@LB@Unfolding Energy - mRNA 4.43682 kcal/mol@LB@Unfolding Energy - sRNA 7.71857 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
77 |
0.00159 |
0.07263 |
b2159 |
nfo |
-11.23 |
0.018951 |
134 -- 154 |
4 -- 22 |
endonuclease IV with intrinsic 3'-5' exonuclease activity |
|
_____________133___________________155\n_____________|_____________________|\n5'-GAC...CCACU__________C____UA____GCUAU...CCA-3'\n______________ACAUCUUGCU_CUGU__ACCC\n______________|||||||:|:_||||__||||\n______________UGUAGAAUGG_GACA__UGGG\n3'-AUU...UAUCU__________A__________AUG-5'\n_____________|_____________________|\n_____________23____________________3\n |
134 -- 140 |
16 -- 22 |
-23.2044 kcal/mol |
4.007 kcal/mol |
7.98841 kcal/mol |
133 155@LB@ | |@LB@5'-GAC...CCACU C UA GCUAU...CCA-3'@LB@ ACAUCUUGCU CUGU ACCC@LB@ |||||||:|: |||| ||||@LB@ UGUAGAAUGG GACA UGGG@LB@3'-AUU...UAUCU A AUG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -23.2044 kcal/mol@LB@Unfolding Energy - mRNA 4.007 kcal/mol@LB@Unfolding Energy - sRNA 7.98841 kcal/mol@LB@@LB@Position - mRNA 134 -- 154@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 16 -- 22@LB@ |
171 |
0.00718 |
0.1466 |
b1708 |
nlpC |
-9.44 |
0.065343 |
288 -- 298 |
49 -- 59 |
putative C40 clan peptidase lipoprotein |
|
_____________287_________299\n_____________|___________|\n5'-AAA...UUUCU___________CG-3'\n______________GAUUCGAUUAC\n______________:||:|||||||\n______________UUAGGCUAAUG\n3'-AUU...UCGGU___________CACUU...AUG-5'\n_____________|___________|\n_____________60__________48\n |
292 -- 298 |
49 -- 55 |
-11.5278 kcal/mol |
1.77565 kcal/mol |
0.318405 kcal/mol |
287 299@LB@ | |@LB@5'-AAA...UUUCU CG-3'@LB@ GAUUCGAUUAC@LB@ :||:|||||||@LB@ UUAGGCUAAUG@LB@3'-AUU...UCGGU CACUU...AUG-5'@LB@ | |@LB@ 60 48@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -11.5278 kcal/mol@LB@Unfolding Energy - mRNA 1.77565 kcal/mol@LB@Unfolding Energy - sRNA 0.318405 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 49 -- 59@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
155 |
0.00623 |
0.1406 |
b4178 |
nsrR |
-8.53 |
0.114937 |
220 -- 228 |
48 -- 56 |
nitric oxide-sensitive repressor for NO regulon |
|
_____________219_______229\n_____________|_________|\n5'-GGU...UUUCA_________GAUUA...ACG-3'\n______________CUGAUUACG\n______________|:|||||||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
222 -- 228 |
48 -- 54 |
-11.8869 kcal/mol |
1.78283 kcal/mol |
1.55919 kcal/mol |
219 229@LB@ | |@LB@5'-GGU...UUUCA GAUUA...ACG-3'@LB@ CUGAUUACG@LB@ |:|||||||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -8.53 kcal/mol@LB@Hybridization Energy -11.8869 kcal/mol@LB@Unfolding Energy - mRNA 1.78283 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 220 -- 228@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 48 -- 54@LB@ |
152 |
0.006159 |
0.1406 |
b2467 |
nudK |
-9.74 |
0.053801 |
255 -- 261 |
1 -- 7 |
GDP-mannose pyrophosphatase |
|
_____________254_____262\n_____________|_______|\n5'-CAA...AUUUC_______ACAAC...AAG-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
255 -- 261 |
1 -- 7 |
-11.9691 kcal/mol |
0.21022 kcal/mol |
2.03949 kcal/mol |
254 262@LB@ | |@LB@5'-CAA...AUUUC ACAAC...AAG-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -11.9691 kcal/mol@LB@Unfolding Energy - mRNA 0.21022 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 255 -- 261@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
109 |
0.003426 |
0.1101 |
b2280 |
nuoJ |
-6.41 |
0.346318 |
31 -- 43 |
48 -- 59 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________30____________44\n_____________|_____________|\n5'-GAU...GCCAG_________U___AGAAA...UUA-3'\n______________GAUCUGGUU_ACG\n______________:|||:|:||_|||\n______________UUAGGCUAA_UGC\n3'-AUU...UCGGU_____________ACUUC...AUG-5'\n_____________|_____________|\n_____________60____________47\n |
33 -- 39 |
51 -- 57 |
-11.2654 kcal/mol |
3.27917 kcal/mol |
1.55995 kcal/mol |
30 44@LB@ | |@LB@5'-GAU...GCCAG U AGAAA...UUA-3'@LB@ GAUCUGGUU ACG@LB@ :|||:|:|| |||@LB@ UUAGGCUAA UGC@LB@3'-AUU...UCGGU ACUUC...AUG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -11.2654 kcal/mol@LB@Unfolding Energy - mRNA 3.27917 kcal/mol@LB@Unfolding Energy - sRNA 1.55995 kcal/mol@LB@@LB@Position - mRNA 31 -- 43@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 51 -- 57@LB@ |
164 |
0.006623 |
0.1421 |
b2278 |
nuoL |
-8.77 |
0.099276 |
203 -- 221 |
5 -- 24 |
NADH:ubiquinone oxidoreductase membrane subunit L |
|
_____________202___________________222\n_____________|_____________________|\n5'-GGU...CGGAU______G________A_____AUUAU...UCG-3'\n______________GAACAU_CUUGCCUU___ACC\n______________||||||_|||:|||:___|||\n______________CUUGUA_GAAUGGAG___UGG\n3'-AUU...UCUAU_______________ACA___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
211 -- 217 |
11 -- 17 |
-20.7037 kcal/mol |
3.94864 kcal/mol |
8.01095 kcal/mol |
202 222@LB@ | |@LB@5'-GGU...CGGAU G A AUUAU...UCG-3'@LB@ GAACAU CUUGCCUU ACC@LB@ |||||| |||:|||: |||@LB@ CUUGUA GAAUGGAG UGG@LB@3'-AUU...UCUAU ACA GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.77 kcal/mol@LB@Hybridization Energy -20.7037 kcal/mol@LB@Unfolding Energy - mRNA 3.94864 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
124 |
0.004173 |
0.1178 |
b0131 |
panD |
-9.38 |
0.067843 |
182 -- 197 |
22 -- 38 |
aspartate 1-decarboxylase |
|
_____________181_______________198\n_____________|_________________|\n5'-AUU...CGACA____A____________GUUAU...UUG-3'\n______________GGGU__GAAAGGUAGAA\n______________:|||__|||||:|||||\n______________UCCA__CUUUCUAUCUU\n3'-AUU...CAUUU____GA___________GUAGA...AUG-5'\n_____________|_________________|\n_____________39________________21\n |
191 -- 197 |
22 -- 28 |
-16.986 kcal/mol |
1.71047 kcal/mol |
5.81616 kcal/mol |
181 198@LB@ | |@LB@5'-AUU...CGACA A GUUAU...UUG-3'@LB@ GGGU GAAAGGUAGAA@LB@ :||| |||||:|||||@LB@ UCCA CUUUCUAUCUU@LB@3'-AUU...CAUUU GA GUAGA...AUG-5'@LB@ | |@LB@ 39 21@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -16.986 kcal/mol@LB@Unfolding Energy - mRNA 1.71047 kcal/mol@LB@Unfolding Energy - sRNA 5.81616 kcal/mol@LB@@LB@Position - mRNA 182 -- 197@LB@Position - sRNA 22 -- 38@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 22 -- 28@LB@ |
4 |
8.02e-06 |
0.007054 |
b0425 |
panE |
-14.83 |
0.000836 |
22 -- 49 |
1 -- 32 |
2-dehydropantoate reductase NADPH-specific |
|
_____________21________________________________50\n_____________|_________________________________|\n5'-AUC...AUAUC_________________UU____________U_AUUUU...CGC-3'\n______________GAAAGAUGG__CAUCUU__CCUCU___CCCU_C\n______________|||||||:|__||||||__|||||___||||_|\n______________CUUUCUAUC__GUAGAA__GGAGA___GGGA_G\n3'-AUU...CCAGA_________UU______U______CAU____U_-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
24 -- 30 |
24 -- 30 |
-28.6113 kcal/mol |
4.98037 kcal/mol |
8.82471 kcal/mol |
21 50@LB@ | |@LB@5'-AUC...AUAUC UU U AUUUU...CGC-3'@LB@ GAAAGAUGG CAUCUU CCUCU CCCU C@LB@ |||||||:| |||||| ||||| |||| |@LB@ CUUUCUAUC GUAGAA GGAGA GGGA G@LB@3'-AUU...CCAGA UU U CAU U -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -28.6113 kcal/mol@LB@Unfolding Energy - mRNA 4.98037 kcal/mol@LB@Unfolding Energy - sRNA 8.82471 kcal/mol@LB@@LB@Position - mRNA 22 -- 49@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 24 -- 30@LB@ |
153 |
0.006198 |
0.1406 |
b3459 |
panM |
-8.50 |
0.116540 |
144 -- 151 |
50 -- 57 |
PanD autocleavage accelerator panothenate synthesis |
|
_____________143______152\n_____________|________|\n5'-AAA...AAGCC________AAUUA...UUG-3'\n______________UCCGAUUA\n______________||||||||\n______________AGGCUAAU\n3'-AUU...GGUUU________GCACU...AUG-5'\n_____________|________|\n_____________58_______49\n |
145 -- 151 |
50 -- 56 |
-10.246 kcal/mol |
1.44461 kcal/mol |
0.317388 kcal/mol |
143 152@LB@ | |@LB@5'-AAA...AAGCC AAUUA...UUG-3'@LB@ UCCGAUUA@LB@ ||||||||@LB@ AGGCUAAU@LB@3'-AUU...GGUUU GCACU...AUG-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -10.246 kcal/mol@LB@Unfolding Energy - mRNA 1.44461 kcal/mol@LB@Unfolding Energy - sRNA 0.317388 kcal/mol@LB@@LB@Position - mRNA 144 -- 151@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 50 -- 56@LB@ |
3 |
0 |
0 |
b2564 |
pdxJ |
-5.03 |
0.588876 |
273 -- 283 |
52 -- 62 |
pyridoxine 5'-phosphate synthase |
|
_____________272_________284\n_____________|___________|\n5'-AAA...CUUAC___________GCAGG...UUG-3'\n______________CCGGAUCCGGU\n______________||::|||||:|\n______________GGUUUAGGCUA\n3'-AUU...AAGUC___________AUGCA...AUG-5'\n_____________|___________|\n_____________63__________51\n |
277 -- 283 |
52 -- 58 |
-14.6263 kcal/mol |
4.30712 kcal/mol |
5.31395 kcal/mol |
272 284@LB@ | |@LB@5'-AAA...CUUAC GCAGG...UUG-3'@LB@ CCGGAUCCGGU@LB@ ||::|||||:|@LB@ GGUUUAGGCUA@LB@3'-AUU...AAGUC AUGCA...AUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -14.6263 kcal/mol@LB@Unfolding Energy - mRNA 4.30712 kcal/mol@LB@Unfolding Energy - sRNA 5.31395 kcal/mol@LB@@LB@Position - mRNA 273 -- 283@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 52 -- 58@LB@ |
46 |
0.0005017 |
0.03778 |
b1713 |
pheT |
-7.80 |
0.173677 |
95 -- 107 |
17 -- 29 |
phenylalanine tRNA synthetase beta subunit |
|
_____________94____________108\n_____________|_____________|\n5'-CUG...GAUGG_____________GACUA...ACG-3'\n______________GGAUGGAGCGUCU\n______________:|||:||:|:|||\n______________UCUAUCUUGUAGA\n3'-AUU...GACUU_____________AUGGA...AUG-5'\n_____________|_____________|\n_____________30____________16\n |
100 -- 106 |
18 -- 24 |
-17.5948 kcal/mol |
5.55471 kcal/mol |
4.26164 kcal/mol |
94 108@LB@ | |@LB@5'-CUG...GAUGG GACUA...ACG-3'@LB@ GGAUGGAGCGUCU@LB@ :|||:||:|:|||@LB@ UCUAUCUUGUAGA@LB@3'-AUU...GACUU AUGGA...AUG-5'@LB@ | |@LB@ 30 16@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -17.5948 kcal/mol@LB@Unfolding Energy - mRNA 5.55471 kcal/mol@LB@Unfolding Energy - sRNA 4.26164 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 17 -- 29@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 18 -- 24@LB@ |
35 |
0.0003501 |
0.03519 |
b2700 |
pncC |
-8.73 |
0.102058 |
11 -- 28 |
20 -- 37 |
nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase |
|
_____________10_________________29\n_____________|__________________|\n5'-ACG...AUGGC_______C__U_______AGCCG...GUU-3'\n______________GGUCUGG_AG_UAGGACA\n______________||||||:_||_|||:|||\n______________CCAGACU_UC_AUCUUGU\n3'-AUU...AUUUU_______U__U_______AGAAU...AUG-5'\n_____________|__________________|\n_____________38_________________19\n |
22 -- 28 |
20 -- 26 |
-19.0339 kcal/mol |
5.51285 kcal/mol |
4.72108 kcal/mol |
10 29@LB@ | |@LB@5'-ACG...AUGGC C U AGCCG...GUU-3'@LB@ GGUCUGG AG UAGGACA@LB@ ||||||: || |||:|||@LB@ CCAGACU UC AUCUUGU@LB@3'-AUU...AUUUU U U AGAAU...AUG-5'@LB@ | |@LB@ 38 19@LB@@LB@@LB@Energy -8.73 kcal/mol@LB@Hybridization Energy -19.0339 kcal/mol@LB@Unfolding Energy - mRNA 5.51285 kcal/mol@LB@Unfolding Energy - sRNA 4.72108 kcal/mol@LB@@LB@Position - mRNA 11 -- 28@LB@Position - sRNA 20 -- 37@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 20 -- 26@LB@ |
6 |
1.448e-05 |
0.00754 |
b3863 |
polA |
-11.40 |
0.016745 |
236 -- 262 |
1 -- 29 |
5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
|
_____________235___________________________263\n_____________|_____________________________|\n5'-AGA...CUUGU______UU_________________GC__AUAUC...GCG-3'\n______________AGAUGG__CAUCUUAUCUU__UAUC__GC\n______________||||:|__|||||||:||:__||:|__:|\n______________UCUAUC__GUAGAAUGGAG__AUGG__UG\n3'-AUU...GACUU______UU___________AC____GA__-5'\n_____________|____________________________|\n_____________30___________________________1\n |
244 -- 250 |
15 -- 21 |
-25.0693 kcal/mol |
5.64295 kcal/mol |
8.05079 kcal/mol |
235 263@LB@ | |@LB@5'-AGA...CUUGU UU GC AUAUC...GCG-3'@LB@ AGAUGG CAUCUUAUCUU UAUC GC@LB@ ||||:| |||||||:||: ||:| :|@LB@ UCUAUC GUAGAAUGGAG AUGG UG@LB@3'-AUU...GACUU UU AC GA -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -25.0693 kcal/mol@LB@Unfolding Energy - mRNA 5.64295 kcal/mol@LB@Unfolding Energy - sRNA 8.05079 kcal/mol@LB@@LB@Position - mRNA 236 -- 262@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 15 -- 21@LB@ |
73 |
0.001217 |
0.05856 |
b1702 |
ppsA |
-8.47 |
0.118779 |
124 -- 132 |
50 -- 58 |
phosphoenolpyruvate synthase |
|
_____________123_______133\n_____________|_________|\n5'-UAU...UUUUC_________AAUAU...AAA-3'\n______________AUCCGGUUA\n______________|||||:|||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
126 -- 132 |
50 -- 56 |
-10.3571 kcal/mol |
1.58803 kcal/mol |
0.317553 kcal/mol |
123 133@LB@ | |@LB@5'-UAU...UUUUC AAUAU...AAA-3'@LB@ AUCCGGUUA@LB@ |||||:|||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -10.3571 kcal/mol@LB@Unfolding Energy - mRNA 1.58803 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 124 -- 132@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 50 -- 56@LB@ |
97 |
0.002764 |
0.1002 |
b3935 |
priA |
-7.71 |
0.181779 |
237 -- 247 |
3 -- 14 |
Primosome factor n' (replication factor Y) |
|
_____________236__________248\n_____________|____________|\n5'-GAA...CGCUU____________UGACU...GCG-3'\n______________CCUC_GUACCUU\n______________||||_|||||:|\n______________GGAG_CAUGGGA\n3'-AUU...AGAAU____A_______UG-5'\n_____________|____________|\n_____________15___________2\n |
241 -- 247 |
3 -- 9 |
-14.2439 kcal/mol |
1.19768 kcal/mol |
5.35591 kcal/mol |
236 248@LB@ | |@LB@5'-GAA...CGCUU UGACU...GCG-3'@LB@ CCUC GUACCUU@LB@ |||| |||||:|@LB@ GGAG CAUGGGA@LB@3'-AUU...AGAAU A UG-5'@LB@ | |@LB@ 15 2@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -14.2439 kcal/mol@LB@Unfolding Energy - mRNA 1.19768 kcal/mol@LB@Unfolding Energy - sRNA 5.35591 kcal/mol@LB@@LB@Position - mRNA 237 -- 247@LB@Position - sRNA 3 -- 14@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 3 -- 9@LB@ |
130 |
0.004431 |
0.1199 |
b3355 |
prkB |
-7.29 |
0.227256 |
214 -- 220 |
52 -- 58 |
putative phosphoribulokinase |
|
_____________213_____221\n_____________|_______|\n5'-GGC...CAAAC_______CAUUG...AUC-3'\n______________AUCCGGU\n______________|||||:|\n______________UAGGCUA\n3'-AUU...CGGUU_______AUGCA...AUG-5'\n_____________|_______|\n_____________59______51\n |
214 -- 220 |
52 -- 58 |
-8.26146 kcal/mol |
0.695321 kcal/mol |
0.296688 kcal/mol |
213 221@LB@ | |@LB@5'-GGC...CAAAC CAUUG...AUC-3'@LB@ AUCCGGU@LB@ |||||:|@LB@ UAGGCUA@LB@3'-AUU...CGGUU AUGCA...AUG-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -8.26146 kcal/mol@LB@Unfolding Energy - mRNA 0.695321 kcal/mol@LB@Unfolding Energy - sRNA 0.296688 kcal/mol@LB@@LB@Position - mRNA 214 -- 220@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 52 -- 58@LB@ |
37 |
0.0003769 |
0.03584 |
b1212 |
prmC |
-14.52 |
0.001141 |
215 -- 228 |
43 -- 56 |
RF-1 and RF-2 N5-glutamine methyltransferase |
|
_____________214____________229\n_____________|______________|\n5'-CGU...CAACA______________CAAUA...GCA-3'\n______________CUGGUUACGUGAAG\n______________|:|:||||||||||\n______________GGCUAAUGCACUUC\n3'-AUU...GUUUA______________AUUUU...AUG-5'\n_____________|______________|\n_____________57_____________42\n |
222 -- 228 |
43 -- 49 |
-20.863 kcal/mol |
3.08488 kcal/mol |
3.27327 kcal/mol |
214 229@LB@ | |@LB@5'-CGU...CAACA CAAUA...GCA-3'@LB@ CUGGUUACGUGAAG@LB@ |:|:||||||||||@LB@ GGCUAAUGCACUUC@LB@3'-AUU...GUUUA AUUUU...AUG-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -14.52 kcal/mol@LB@Hybridization Energy -20.863 kcal/mol@LB@Unfolding Energy - mRNA 3.08488 kcal/mol@LB@Unfolding Energy - sRNA 3.27327 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 43 -- 49@LB@ |
179 |
0.007709 |
0.1511 |
b4111 |
proP |
-8.76 |
0.100034 |
225 -- 232 |
49 -- 56 |
proline/glycine betaine transporter |
|
_____________224______233\n_____________|________|\n5'-CAC...UAAAA________CCUUC...GUA-3'\n______________CCGAUUAC\n______________||||||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
226 -- 232 |
49 -- 55 |
-10.6643 kcal/mol |
1.60159 kcal/mol |
0.317884 kcal/mol |
224 233@LB@ | |@LB@5'-CAC...UAAAA CCUUC...GUA-3'@LB@ CCGAUUAC@LB@ ||||||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -10.6643 kcal/mol@LB@Unfolding Energy - mRNA 1.60159 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 225 -- 232@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 49 -- 55@LB@ |
34 |
0.0003499 |
0.03519 |
b0333 |
prpC |
-9.01 |
0.085770 |
169 -- 175 |
1 -- 7 |
2-methylcitrate synthase |
|
_____________168_____176\n_____________|_______|\n5'-ACU...UCUCG_______AAAUG...GCA-3'\n______________ACCCUAC\n______________|||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
169 -- 175 |
1 -- 7 |
-11.7504 kcal/mol |
0.722985 kcal/mol |
2.03949 kcal/mol |
168 176@LB@ | |@LB@5'-ACU...UCUCG AAAUG...GCA-3'@LB@ ACCCUAC@LB@ |||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -11.7504 kcal/mol@LB@Unfolding Energy - mRNA 0.722985 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 169 -- 175@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 1 -- 7@LB@ |
169 |
0.006985 |
0.1454 |
b0384 |
psiF |
-5.27 |
0.543574 |
221 -- 228 |
1 -- 8 |
PsiF family protein |
|
_____________220______229\n_____________|________|\n5'-CCC...CUGGU________UUUUC...UGA-3'\n______________UACCUUGC\n______________||||:|:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
222 -- 228 |
1 -- 7 |
-9.62499 kcal/mol |
2.26355 kcal/mol |
2.11603 kcal/mol |
220 229@LB@ | |@LB@5'-CCC...CUGGU UUUUC...UGA-3'@LB@ UACCUUGC@LB@ ||||:|:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -5.27 kcal/mol@LB@Hybridization Energy -9.62499 kcal/mol@LB@Unfolding Energy - mRNA 2.26355 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 221 -- 228@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
33 |
0.0003369 |
0.03519 |
b0523 |
purE |
-12.01 |
0.010423 |
150 -- 160 |
3 -- 13 |
N5-carboxyaminoimidazole ribonucleotide mutase |
|
_____________149__________161\n_____________|____________|\n5'-UGG...GCUAU____________CUAAA...UGA-3'\n______________UCUCUGUGCCCU\n______________:||||||:||||\n______________GGAGACAUGGGA\n3'-AUU...AGAAU____________UG-5'\n_____________|____________|\n_____________14___________2\n |
154 -- 160 |
3 -- 9 |
-20.2448 kcal/mol |
2.89849 kcal/mol |
5.35591 kcal/mol |
149 161@LB@ | |@LB@5'-UGG...GCUAU CUAAA...UGA-3'@LB@ UCUCUGUGCCCU@LB@ :||||||:||||@LB@ GGAGACAUGGGA@LB@3'-AUU...AGAAU UG-5'@LB@ | |@LB@ 14 2@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -20.2448 kcal/mol@LB@Unfolding Energy - mRNA 2.89849 kcal/mol@LB@Unfolding Energy - sRNA 5.35591 kcal/mol@LB@@LB@Position - mRNA 150 -- 160@LB@Position - sRNA 3 -- 13@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 3 -- 9@LB@ |
53 |
0.0007581 |
0.04961 |
b1302 |
puuE |
-16.93 |
0.000076 |
166 -- 207 |
20 -- 57 |
4-aminobutyrate aminotransferase PLP-dependent |
b2662 |
_____________165_________________________________________208\n_____________|___________________________________________|\n5'-AGC...UAAUU________AC_______AGUC_______G_____C________ACAAU...CGC-3'\n______________UCCGAUUA__CGUGAAG____AAAAGGU_UGAAA_AU_GAGCA\n______________||||||||__|||||||____|||||||_|||||_||_||:||\n______________AGGCUAAU__GCACUUC____UUUUCCA_ACUUU_UA_CUUGU\n3'-AUU...GGUUU_________________A__________G_____C__U_____AGAAU...AUG-5'\n_____________|___________________________________________|\n_____________58__________________________________________19\n |
176 -- 182 |
43 -- 49 |
-36.956 kcal/mol |
7.85943 kcal/mol |
12.1551 kcal/mol |
165 208@LB@ | |@LB@5'-AGC...UAAUU AC AGUC G C ACAAU...CGC-3'@LB@ UCCGAUUA CGUGAAG AAAAGGU UGAAA AU GAGCA@LB@ |||||||| ||||||| ||||||| ||||| || ||:||@LB@ AGGCUAAU GCACUUC UUUUCCA ACUUU UA CUUGU@LB@3'-AUU...GGUUU A G C U AGAAU...AUG-5'@LB@ | |@LB@ 58 19@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -36.956 kcal/mol@LB@Unfolding Energy - mRNA 7.85943 kcal/mol@LB@Unfolding Energy - sRNA 12.1551 kcal/mol@LB@@LB@Position - mRNA 166 -- 207@LB@Position - sRNA 20 -- 57@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 43 -- 49@LB@ |
119 |
0.003968 |
0.1172 |
b2765 |
queD |
-8.07 |
0.149030 |
164 -- 172 |
1 -- 9 |
6-pyruvoyl tetrahydrobiopterin synthase (PTPS) |
|
_____________163_______173\n_____________|_________|\n5'-AAC...UUCCG_________GGCGG...AUU-3'\n______________GUACUCUAC\n______________||||:||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
166 -- 172 |
1 -- 7 |
-12.1088 kcal/mol |
1.92954 kcal/mol |
2.12872 kcal/mol |
163 173@LB@ | |@LB@5'-AAC...UUCCG GGCGG...AUU-3'@LB@ GUACUCUAC@LB@ ||||:||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -12.1088 kcal/mol@LB@Unfolding Energy - mRNA 1.92954 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 1 -- 7@LB@ |
90 |
0.002406 |
0.09404 |
b0551 |
quuD |
-13.47 |
0.003063 |
177 -- 196 |
40 -- 58 |
DLP12 prophage; putative antitermination protein |
|
_____________176__________________197\n_____________|____________________|\n5'-ACU...UUCUG________UU__________GUUGA...GAU-3'\n______________GUCUGAUU__UGUGGAGUAA\n______________:||:||||__:|||:|||||\n______________UAGGCUAA__GCACUUCAUU\n3'-AUU...CGGUU________U___________UUCCA...AUG-5'\n_____________|____________________|\n_____________59___________________39\n |
190 -- 196 |
40 -- 46 |
-19.625 kcal/mol |
2.82746 kcal/mol |
3.34877 kcal/mol |
176 197@LB@ | |@LB@5'-ACU...UUCUG UU GUUGA...GAU-3'@LB@ GUCUGAUU UGUGGAGUAA@LB@ :||:|||| :|||:|||||@LB@ UAGGCUAA GCACUUCAUU@LB@3'-AUU...CGGUU U UUCCA...AUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -19.625 kcal/mol@LB@Unfolding Energy - mRNA 2.82746 kcal/mol@LB@Unfolding Energy - sRNA 3.34877 kcal/mol@LB@@LB@Position - mRNA 177 -- 196@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 40 -- 46@LB@ |
189 |
0.008373 |
0.1558 |
b1559 |
quuQ |
-11.90 |
0.011421 |
197 -- 219 |
1 -- 24 |
Qin prophage; putative antitermination protein Q |
|
_____________196______________________220\n_____________|________________________|\n5'-UCU...AGAAC______GA______GAA_______CAAAA...AUG-3'\n______________GAGCAU___ACCUU___GCCUUAC\n______________||:|||___||||:___:||:|||\n______________CUUGUA___UGGAG___UGGGAUG\n3'-AUU...UCUAU______GAA_____ACA_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
213 -- 219 |
1 -- 7 |
-21.9861 kcal/mol |
2.0909 kcal/mol |
8.02158 kcal/mol |
196 220@LB@ | |@LB@5'-UCU...AGAAC GA GAA CAAAA...AUG-3'@LB@ GAGCAU ACCUU GCCUUAC@LB@ ||:||| ||||: :||:|||@LB@ CUUGUA UGGAG UGGGAUG@LB@3'-AUU...UCUAU GAA ACA -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -21.9861 kcal/mol@LB@Unfolding Energy - mRNA 2.0909 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 197 -- 219@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 1 -- 7@LB@ |
105 |
0.003348 |
0.1101 |
b2218 |
rcsC |
-11.03 |
0.021992 |
174 -- 214 |
1 -- 37 |
hybrid sensory kinase in two-component regulatory system with RcsB and YojN |
|
_____________173_______________________________________215\n_____________|_________________________________________|\n5'-AGC...CCAUC____ACCU____C_____U__GCC______AAA________UUCUU...CCG-3'\n______________GGUC____GAGG_GGAGC_UC___CCUUUG___UACCUUGC\n______________||||____:||:_:||:|_||___|||:||___||||:|:|\n______________CCAG____UUCU_UCUUG_AG___GGAGAC___AUGGGAUG\n3'-AUU...AUUUU____ACU_____A_____U__AAU_________________-5'\n_____________|________________________________________|\n_____________38_______________________________________1\n |
208 -- 214 |
1 -- 7 |
-33.3544 kcal/mol |
10.9963 kcal/mol |
11.3499 kcal/mol |
173 215@LB@ | |@LB@5'-AGC...CCAUC ACCU C U GCC AAA UUCUU...CCG-3'@LB@ GGUC GAGG GGAGC UC CCUUUG UACCUUGC@LB@ |||| :||: :||:| || |||:|| ||||:|:|@LB@ CCAG UUCU UCUUG AG GGAGAC AUGGGAUG@LB@3'-AUU...AUUUU ACU A U AAU -5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -33.3544 kcal/mol@LB@Unfolding Energy - mRNA 10.9963 kcal/mol@LB@Unfolding Energy - sRNA 11.3499 kcal/mol@LB@@LB@Position - mRNA 174 -- 214@LB@Position - sRNA 1 -- 37@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 1 -- 7@LB@ |
149 |
0.005967 |
0.1406 |
b0472 |
recR |
-13.66 |
0.002580 |
134 -- 160 |
3 -- 29 |
gap repair protein |
|
_____________133_________________________161\n_____________|___________________________|\n5'-GUG...AACGC___A____AAAAUG_____________CCGGA...UUC-3'\n______________AGA_AGAA______GCCUCUGUAUCCU\n______________|||_||||______:||||||||:|||\n______________UCU_UCUU______UGGAGACAUGGGA\n3'-AUU...GACUU___A____GUAGAA_____________UG-5'\n_____________|___________________________|\n_____________30__________________________2\n |
154 -- 160 |
3 -- 9 |
-27.6106 kcal/mol |
5.92472 kcal/mol |
8.05021 kcal/mol |
133 161@LB@ | |@LB@5'-GUG...AACGC A AAAAUG CCGGA...UUC-3'@LB@ AGA AGAA GCCUCUGUAUCCU@LB@ ||| |||| :||||||||:|||@LB@ UCU UCUU UGGAGACAUGGGA@LB@3'-AUU...GACUU A GUAGAA UG-5'@LB@ | |@LB@ 30 2@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -27.6106 kcal/mol@LB@Unfolding Energy - mRNA 5.92472 kcal/mol@LB@Unfolding Energy - sRNA 8.05021 kcal/mol@LB@@LB@Position - mRNA 134 -- 160@LB@Position - sRNA 3 -- 29@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 3 -- 9@LB@ |
30 |
0.0002612 |
0.03063 |
b3789 |
rffH |
-9.15 |
0.078548 |
244 -- 254 |
48 -- 58 |
glucose-1-phosphate thymidylyltransferase |
|
_____________243_________255\n_____________|___________|\n5'-GGC...AUUGC___________CGCGG...UGA-3'\n______________AUCCGAUUACG\n______________|||||||||||\n______________UAGGCUAAUGC\n3'-AUU...CGGUU___________ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
248 -- 254 |
48 -- 54 |
-15.7126 kcal/mol |
4.98099 kcal/mol |
1.55987 kcal/mol |
243 255@LB@ | |@LB@5'-GGC...AUUGC CGCGG...UGA-3'@LB@ AUCCGAUUACG@LB@ |||||||||||@LB@ UAGGCUAAUGC@LB@3'-AUU...CGGUU ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.7126 kcal/mol@LB@Unfolding Energy - mRNA 4.98099 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 244 -- 254@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
101 |
0.00315 |
0.1097 |
b1822 |
rlmA |
-7.85 |
0.169074 |
182 -- 190 |
1 -- 9 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________181_______191\n_____________|_________|\n5'-AAG...CUUUA_________CGGAG...GGU-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
184 -- 190 |
1 -- 7 |
-13.1594 kcal/mol |
3.20778 kcal/mol |
2.12872 kcal/mol |
181 191@LB@ | |@LB@5'-AAG...CUUUA CGGAG...GGU-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -13.1594 kcal/mol@LB@Unfolding Energy - mRNA 3.20778 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 182 -- 190@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
144 |
0.005273 |
0.1288 |
b1652 |
rnt |
-8.26 |
0.134019 |
203 -- 213 |
48 -- 58 |
RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
|
_____________202_________214\n_____________|___________|\n5'-AAG...CAGAU_______A___CUCAA...CCG-3'\n______________GUCCGAU_ACG\n______________:||||||_|||\n______________UAGGCUA_UGC\n3'-AUU...CGGUU_______A___ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
203 -- 209 |
52 -- 58 |
-12.2442 kcal/mol |
2.4043 kcal/mol |
1.55987 kcal/mol |
202 214@LB@ | |@LB@5'-AAG...CAGAU A CUCAA...CCG-3'@LB@ GUCCGAU ACG@LB@ :|||||| |||@LB@ UAGGCUA UGC@LB@3'-AUU...CGGUU A ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -12.2442 kcal/mol@LB@Unfolding Energy - mRNA 2.4043 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 203 -- 213@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 52 -- 58@LB@ |
195 |
0.008707 |
0.1558 |
b3318 |
rplW |
-7.58 |
0.194751 |
202 -- 213 |
43 -- 55 |
50S ribosomal subunit protein L23 |
|
_____________201___________214\n_____________|_____________|\n5'-GCA...UGGCA_____________AACGU...AAG-3'\n______________UGAUU_CGUGAAG\n______________:||||_|||||||\n______________GCUAA_GCACUUC\n3'-AUU...UUUAG_____U_______AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
207 -- 213 |
43 -- 49 |
-13.4464 kcal/mol |
2.60751 kcal/mol |
3.2693 kcal/mol |
201 214@LB@ | |@LB@5'-GCA...UGGCA AACGU...AAG-3'@LB@ UGAUU CGUGAAG@LB@ :|||| |||||||@LB@ GCUAA GCACUUC@LB@3'-AUU...UUUAG U AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -13.4464 kcal/mol@LB@Unfolding Energy - mRNA 2.60751 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 43 -- 49@LB@ |
42 |
0.0004615 |
0.03766 |
b3341 |
rpsG |
-11.13 |
0.020425 |
227 -- 249 |
53 -- 76 |
30S ribosomal subunit protein S7 |
|
_____________226______________________250\n_____________|________________________|\n5'-CGG...GGUCA__GU________U___________AGUUC...AUG-3'\n______________GC__AAA_AUUC_GCCGGAUCCGA\n______________||__|||_||||_|||::||||||\n______________CG__UUU_UAAG_CGGUUUAGGCU\n3'-AUU...CCCGC__AU___A____U___________AAUGC...AUG-5'\n_____________|________________________|\n_____________77_______________________52\n |
243 -- 249 |
53 -- 59 |
-23.8099 kcal/mol |
6.33566 kcal/mol |
6.36489 kcal/mol |
226 250@LB@ | |@LB@5'-CGG...GGUCA GU U AGUUC...AUG-3'@LB@ GC AAA AUUC GCCGGAUCCGA@LB@ || ||| |||| |||::||||||@LB@ CG UUU UAAG CGGUUUAGGCU@LB@3'-AUU...CCCGC AU A U AAUGC...AUG-5'@LB@ | |@LB@ 77 52@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -23.8099 kcal/mol@LB@Unfolding Energy - mRNA 6.33566 kcal/mol@LB@Unfolding Energy - sRNA 6.36489 kcal/mol@LB@@LB@Position - mRNA 227 -- 249@LB@Position - sRNA 53 -- 76@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 53 -- 59@LB@ |
81 |
0.001761 |
0.07647 |
b3311 |
rpsQ |
-9.62 |
0.058411 |
217 -- 225 |
1 -- 9 |
30S ribosomal subunit protein S17 |
|
_____________216_______226\n_____________|_________|\n5'-GGU...AAUCC_________AAGGU...UCU-3'\n______________GUACUCUGC\n______________||||:||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
219 -- 225 |
1 -- 7 |
-13.7932 kcal/mol |
2.07071 kcal/mol |
2.12872 kcal/mol |
216 226@LB@ | |@LB@5'-GGU...AAUCC AAGGU...UCU-3'@LB@ GUACUCUGC@LB@ ||||:||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -13.7932 kcal/mol@LB@Unfolding Energy - mRNA 2.07071 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 217 -- 225@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 1 -- 7@LB@ |
184 |
0.00812 |
0.1553 |
b4371 |
rsmC |
-7.50 |
0.203534 |
191 -- 216 |
4 -- 25 |
16S rRNA m(2)G1207 methyltransferase SAM-dependent |
|
_____________190________________________217\n_____________|__________________________|\n5'-AUC...AUUGA________CC__G____CAUU_____CGGCA...UGC-3'\n______________GGAGCAUU__AU_UCUG____UACCC\n______________:||:|||:__|:_||||____|||||\n______________UCUUGUAG__UG_AGAC____AUGGG\n3'-AUU...UUCUA________AA__G_____________AUG-5'\n_____________|__________________________|\n_____________26_________________________3\n |
192 -- 198 |
18 -- 24 |
-20.5319 kcal/mol |
5.03265 kcal/mol |
8.0209 kcal/mol |
190 217@LB@ | |@LB@5'-AUC...AUUGA CC G CAUU CGGCA...UGC-3'@LB@ GGAGCAUU AU UCUG UACCC@LB@ :||:|||: |: |||| |||||@LB@ UCUUGUAG UG AGAC AUGGG@LB@3'-AUU...UUCUA AA G AUG-5'@LB@ | |@LB@ 26 3@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -20.5319 kcal/mol@LB@Unfolding Energy - mRNA 5.03265 kcal/mol@LB@Unfolding Energy - sRNA 8.0209 kcal/mol@LB@@LB@Position - mRNA 191 -- 216@LB@Position - sRNA 4 -- 25@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 18 -- 24@LB@ |
76 |
0.001511 |
0.06993 |
b3465 |
rsmD |
-10.43 |
0.033857 |
227 -- 244 |
49 -- 65 |
16S rRNA m(2)G966 methyltransferase SAM-dependent |
|
_____________226________________245\n_____________|__________________|\n5'-UUG...GGCAG____________C_____UGGCG...GCC-3'\n______________CGGCCAAAUCCG_AUUAU\n______________|:||||||||||_||||:\n______________GUCGGUUUAGGC_UAAUG\n3'-AUU...UAUAA__________________CACUU...AUG-5'\n_____________|__________________|\n_____________66_________________48\n |
232 -- 238 |
54 -- 60 |
-22.129 kcal/mol |
5.5281 kcal/mol |
6.19707 kcal/mol |
226 245@LB@ | |@LB@5'-UUG...GGCAG C UGGCG...GCC-3'@LB@ CGGCCAAAUCCG AUUAU@LB@ |:|||||||||| ||||:@LB@ GUCGGUUUAGGC UAAUG@LB@3'-AUU...UAUAA CACUU...AUG-5'@LB@ | |@LB@ 66 48@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -22.129 kcal/mol@LB@Unfolding Energy - mRNA 5.5281 kcal/mol@LB@Unfolding Energy - sRNA 6.19707 kcal/mol@LB@@LB@Position - mRNA 227 -- 244@LB@Position - sRNA 49 -- 65@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 54 -- 60@LB@ |
8 |
1.842e-05 |
0.007771 |
b2797 |
sdaB |
-15.07 |
0.000654 |
133 -- 147 |
55 -- 69 |
L-serine dehydratase 2 |
|
_____________132_____________148\n_____________|_______________|\n5'-CGA...CUCUC_______________UUUCG...UGA-3'\n______________UGUUCAGCUAAGUCC\n______________|:||||||:||:|||\n______________AUAAGUCGGUUUAGG\n3'-AUU...AUUUU_______________CUAAU...AUG-5'\n_____________|_______________|\n_____________70______________54\n |
141 -- 147 |
55 -- 61 |
-22.3059 kcal/mol |
1.18067 kcal/mol |
6.0797 kcal/mol |
132 148@LB@ | |@LB@5'-CGA...CUCUC UUUCG...UGA-3'@LB@ UGUUCAGCUAAGUCC@LB@ |:||||||:||:|||@LB@ AUAAGUCGGUUUAGG@LB@3'-AUU...AUUUU CUAAU...AUG-5'@LB@ | |@LB@ 70 54@LB@@LB@@LB@Energy -15.07 kcal/mol@LB@Hybridization Energy -22.3059 kcal/mol@LB@Unfolding Energy - mRNA 1.18067 kcal/mol@LB@Unfolding Energy - sRNA 6.0797 kcal/mol@LB@@LB@Position - mRNA 133 -- 147@LB@Position - sRNA 55 -- 69@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 55 -- 61@LB@ |
20 |
9.41e-05 |
0.01655 |
b0721 |
sdhC |
-12.56 |
0.006704 |
146 -- 157 |
4 -- 15 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________145__________158\n_____________|____________|\n5'-UCC...AGUUA____________GUAGU...CCG-3'\n______________ACCUCUGUGCCC\n______________||||||||:|||\n______________UGGAGACAUGGG\n3'-AUU...UAGAA____________AUG-5'\n_____________|____________|\n_____________16___________3\n |
151 -- 157 |
4 -- 10 |
-23.3451 kcal/mol |
4.99288 kcal/mol |
5.82084 kcal/mol |
145 158@LB@ | |@LB@5'-UCC...AGUUA GUAGU...CCG-3'@LB@ ACCUCUGUGCCC@LB@ ||||||||:|||@LB@ UGGAGACAUGGG@LB@3'-AUU...UAGAA AUG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -23.3451 kcal/mol@LB@Unfolding Energy - mRNA 4.99288 kcal/mol@LB@Unfolding Energy - sRNA 5.82084 kcal/mol@LB@@LB@Position - mRNA 146 -- 157@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 4 -- 10@LB@ |
163 |
0.006545 |
0.1413 |
b0532 |
sfmD |
-7.71 |
0.181786 |
104 -- 132 |
48 -- 76 |
putative outer membrane export usher protein |
b3144 b4317 b0940 |
_____________103____________________________133\n_____________|______________________________|\n5'-UCA...GGAAA______________A___UUAA________GUUCA...GCU-3'\n______________GCUGAAAU_UUCAG_CCG____UGAUUAUG\n______________|||:||||_|||||_||:____:|||||:|\n______________CGAUUUUA_AAGUC_GGU____GCUAAUGC\n3'-AUU...CCCGC________U_________UUAG________ACUUC...AUG-5'\n_____________|______________________________|\n_____________77_____________________________47\n |
126 -- 132 |
48 -- 54 |
-23.9612 kcal/mol |
8.59534 kcal/mol |
7.67378 kcal/mol |
103 133@LB@ | |@LB@5'-UCA...GGAAA A UUAA GUUCA...GCU-3'@LB@ GCUGAAAU UUCAG CCG UGAUUAUG@LB@ |||:|||| ||||| ||: :|||||:|@LB@ CGAUUUUA AAGUC GGU GCUAAUGC@LB@3'-AUU...CCCGC U UUAG ACUUC...AUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -23.9612 kcal/mol@LB@Unfolding Energy - mRNA 8.59534 kcal/mol@LB@Unfolding Energy - sRNA 7.67378 kcal/mol@LB@@LB@Position - mRNA 104 -- 132@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 48 -- 54@LB@ |
111 |
0.003555 |
0.1127 |
b2938 |
speA |
-9.18 |
0.077057 |
36 -- 48 |
46 -- 58 |
biosynthetic arginine decarboxylase PLP-binding |
|
_____________35____________49\n_____________|_____________|\n5'-GUU...CUUAC_____________CUUAA...GCA-3'\n______________GUUCGGUUAUGUG\n______________:|:||:|||:|||\n______________UAGGCUAAUGCAC\n3'-AUU...CGGUU_____________UUCAU...AUG-5'\n_____________|_____________|\n_____________59____________45\n |
42 -- 48 |
46 -- 52 |
-14.853 kcal/mol |
3.8258 kcal/mol |
1.8625 kcal/mol |
35 49@LB@ | |@LB@5'-GUU...CUUAC CUUAA...GCA-3'@LB@ GUUCGGUUAUGUG@LB@ :|:||:|||:|||@LB@ UAGGCUAAUGCAC@LB@3'-AUU...CGGUU UUCAU...AUG-5'@LB@ | |@LB@ 59 45@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -14.853 kcal/mol@LB@Unfolding Energy - mRNA 3.8258 kcal/mol@LB@Unfolding Energy - sRNA 1.8625 kcal/mol@LB@@LB@Position - mRNA 36 -- 48@LB@Position - sRNA 46 -- 58@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 46 -- 52@LB@ |
173 |
0.007216 |
0.1466 |
b3650 |
spoT |
-5.39 |
0.520602 |
11 -- 17 |
54 -- 60 |
bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|
_____________10______18\n_____________|_______|\n5'-UAG...GGAAA_______CUGGU...CUC-3'\n______________GGAUCCG\n______________::|||||\n______________UUUAGGC\n3'-AUU...GUCGG_______UAAUG...AUG-5'\n_____________|_______|\n_____________61______53\n |
11 -- 17 |
54 -- 60 |
-6.87427 kcal/mol |
1.21245 kcal/mol |
0.286889 kcal/mol |
10 18@LB@ | |@LB@5'-UAG...GGAAA CUGGU...CUC-3'@LB@ GGAUCCG@LB@ ::|||||@LB@ UUUAGGC@LB@3'-AUU...GUCGG UAAUG...AUG-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -6.87427 kcal/mol@LB@Unfolding Energy - mRNA 1.21245 kcal/mol@LB@Unfolding Energy - sRNA 0.286889 kcal/mol@LB@@LB@Position - mRNA 11 -- 17@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 54 -- 60@LB@ |
87 |
0.00233 |
0.09349 |
b2522 |
sseB |
-8.85 |
0.094489 |
280 -- 288 |
1 -- 9 |
rhodanase-like enzyme sulfur transfer from thiosulfate |
|
_____________279_______289\n_____________|_________|\n5'-GGU...UUUCC_________UGGAA...CCG-3'\n______________GUACUCUAC\n______________||||:||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
282 -- 288 |
1 -- 7 |
-12.3435 kcal/mol |
1.38525 kcal/mol |
2.12872 kcal/mol |
279 289@LB@ | |@LB@5'-GGU...UUUCC UGGAA...CCG-3'@LB@ GUACUCUAC@LB@ ||||:||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -12.3435 kcal/mol@LB@Unfolding Energy - mRNA 1.38525 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 280 -- 288@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 1 -- 7@LB@ |
12 |
3.867e-05 |
0.01134 |
b0728 |
sucC |
-9.87 |
0.049323 |
145 -- 186 |
43 -- 73 |
succinyl-CoA synthetase beta subunit |
|
_____________144_________________________________________187\n_____________|___________________________________________|\n5'-CGC...GAUAC_____________UACGGUUUAAA____AA_____________GAUGG...AAG-3'\n______________GAAAUAUUCGGUC___________AGAU__CGAUUAC_UGAAG\n______________:||||||||:|:|___________|:||__|||||||_|||||\n______________UUUUAUAAGUCGG___________UUUA__GCUAAUG_ACUUC\n3'-AUU...GCCGA____________________________G________C_____AUUUU...AUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________42\n |
175 -- 181 |
49 -- 55 |
-26.5157 kcal/mol |
7.48621 kcal/mol |
9.17828 kcal/mol |
144 187@LB@ | |@LB@5'-CGC...GAUAC UACGGUUUAAA AA GAUGG...AAG-3'@LB@ GAAAUAUUCGGUC AGAU CGAUUAC UGAAG@LB@ :||||||||:|:| |:|| ||||||| |||||@LB@ UUUUAUAAGUCGG UUUA GCUAAUG ACUUC@LB@3'-AUU...GCCGA G C AUUUU...AUG-5'@LB@ | |@LB@ 74 42@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -26.5157 kcal/mol@LB@Unfolding Energy - mRNA 7.48621 kcal/mol@LB@Unfolding Energy - sRNA 9.17828 kcal/mol@LB@@LB@Position - mRNA 145 -- 186@LB@Position - sRNA 43 -- 73@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |
65 |
0.001093 |
0.05856 |
b1519 |
tam |
-11.83 |
0.011992 |
187 -- 231 |
1 -- 50 |
trans-aconitate methyltransferase |
|
_____________186____________________________________________________232\n_____________|______________________________________________________|\n5'-UUU...CGCUG_____________AAAU______C_________C__________U___A_____ACUUU...AAU-3'\n______________ACG_GGAGUAAAA____GUCUGA____UGGAAC______CCUCU_UAU_UCUAC\n______________|||_|:|||||||____||||||____|:||||______|||||_||:_:||||\n______________UGC_CUUCAUUUU____CAGACU____AUCUUG______GGAGA_AUG_GGAUG\n3'-AUU...GCUAA___A_________C_________UUCU______UAGAAU_____C_________-5'\n_____________|_____________________________________________________|\n_____________51____________________________________________________1\n |
191 -- 197 |
39 -- 45 |
-32.7669 kcal/mol |
8.27841 kcal/mol |
12.6772 kcal/mol |
186 232@LB@ | |@LB@5'-UUU...CGCUG AAAU C C U A ACUUU...AAU-3'@LB@ ACG GGAGUAAAA GUCUGA UGGAAC CCUCU UAU UCUAC@LB@ ||| |:||||||| |||||| |:|||| ||||| ||: :||||@LB@ UGC CUUCAUUUU CAGACU AUCUUG GGAGA AUG GGAUG@LB@3'-AUU...GCUAA A C UUCU UAGAAU C -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -32.7669 kcal/mol@LB@Unfolding Energy - mRNA 8.27841 kcal/mol@LB@Unfolding Energy - sRNA 12.6772 kcal/mol@LB@@LB@Position - mRNA 187 -- 231@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
140 |
0.005114 |
0.1284 |
b3993 |
thiE |
-7.64 |
0.188958 |
243 -- 250 |
4 -- 11 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________242______251\n_____________|________|\n5'-CAC...CAGGA________GGUGG...UAC-3'\n______________CUGUACCC\n______________||||||||\n______________GACAUGGG\n3'-AUU...AUGGA________AUG-5'\n_____________|________|\n_____________12_______3\n |
244 -- 250 |
4 -- 10 |
-13.9053 kcal/mol |
2.83489 kcal/mol |
3.45361 kcal/mol |
242 251@LB@ | |@LB@5'-CAC...CAGGA GGUGG...UAC-3'@LB@ CUGUACCC@LB@ ||||||||@LB@ GACAUGGG@LB@3'-AUU...AUGGA AUG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -13.9053 kcal/mol@LB@Unfolding Energy - mRNA 2.83489 kcal/mol@LB@Unfolding Energy - sRNA 3.45361 kcal/mol@LB@@LB@Position - mRNA 243 -- 250@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 4 -- 10@LB@ |
18 |
6.719e-05 |
0.01313 |
b2935 |
tktA |
-10.85 |
0.025018 |
263 -- 275 |
52 -- 64 |
transketolase 1 thiamine triphosphate-binding |
|
_____________262___________276\n_____________|_____________|\n5'-AAG...CAGAA_____________CACCC...UGG-3'\n______________AGCCAAAUCCGGU\n______________|||||||||||:|\n______________UCGGUUUAGGCUA\n3'-AUU...AUAAG_____________AUGCA...AUG-5'\n_____________|_____________|\n_____________65____________51\n |
269 -- 275 |
52 -- 58 |
-21.1603 kcal/mol |
4.16811 kcal/mol |
6.16128 kcal/mol |
262 276@LB@ | |@LB@5'-AAG...CAGAA CACCC...UGG-3'@LB@ AGCCAAAUCCGGU@LB@ |||||||||||:|@LB@ UCGGUUUAGGCUA@LB@3'-AUU...AUAAG AUGCA...AUG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -21.1603 kcal/mol@LB@Unfolding Energy - mRNA 4.16811 kcal/mol@LB@Unfolding Energy - sRNA 6.16128 kcal/mol@LB@@LB@Position - mRNA 263 -- 275@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 52 -- 58@LB@ |
27 |
0.0002115 |
0.02687 |
b2607 |
trmD |
-14.32 |
0.001383 |
229 -- 258 |
48 -- 75 |
tRNA m(1)G37 methyltransferase SAM-dependent |
|
_____________228____________________________259\n_____________|______________________________|\n5'-UCG...GUUUC___________C__G___U_A_________GGGUA...UCC-3'\n______________CUGAAAUGUUC_GC_CAA_U_CCGAUUACG\n______________||:||||:|||_||_|||_|_|||||||||\n______________GAUUUUAUAAG_CG_GUU_A_GGCUAAUGC\n3'-AUU...CCGCC___________U______U___________ACUUC...AUG-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
252 -- 258 |
48 -- 54 |
-28.476 kcal/mol |
6.50272 kcal/mol |
7.67232 kcal/mol |
228 259@LB@ | |@LB@5'-UCG...GUUUC C G U A GGGUA...UCC-3'@LB@ CUGAAAUGUUC GC CAA U CCGAUUACG@LB@ ||:||||:||| || ||| | |||||||||@LB@ GAUUUUAUAAG CG GUU A GGCUAAUGC@LB@3'-AUU...CCGCC U U ACUUC...AUG-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -28.476 kcal/mol@LB@Unfolding Energy - mRNA 6.50272 kcal/mol@LB@Unfolding Energy - sRNA 7.67232 kcal/mol@LB@@LB@Position - mRNA 229 -- 258@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 48 -- 54@LB@ |
56 |
0.0008344 |
0.05242 |
b3651 |
trmH |
-7.19 |
0.238334 |
68 -- 84 |
17 -- 32 |
tRNA mG18-2'-O-methyltransferase SAM-dependent |
|
_____________67________________85\n_____________|_________________|\n5'-CGC...GAAGA_________UC______ACAGC...UUU-3'\n______________GAAAGAUGG__GCGUCU\n______________|||||||:|__:|:|||\n______________CUUUCUAUC__UGUAGA\n3'-AUU...CCAGA_________U_______AUGGA...AUG-5'\n_____________|_________________|\n_____________33________________16\n |
70 -- 76 |
24 -- 30 |
-18.3937 kcal/mol |
6.9506 kcal/mol |
4.26839 kcal/mol |
67 85@LB@ | |@LB@5'-CGC...GAAGA UC ACAGC...UUU-3'@LB@ GAAAGAUGG GCGUCU@LB@ |||||||:| :|:|||@LB@ CUUUCUAUC UGUAGA@LB@3'-AUU...CCAGA U AUGGA...AUG-5'@LB@ | |@LB@ 33 16@LB@@LB@@LB@Energy -7.19 kcal/mol@LB@Hybridization Energy -18.3937 kcal/mol@LB@Unfolding Energy - mRNA 6.9506 kcal/mol@LB@Unfolding Energy - sRNA 4.26839 kcal/mol@LB@@LB@Position - mRNA 68 -- 84@LB@Position - sRNA 17 -- 32@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 24 -- 30@LB@ |
91 |
0.002527 |
0.0977 |
b4393 |
trpR |
-12.48 |
0.007130 |
9 -- 21 |
43 -- 55 |
transcriptional repressor tryptophan-binding |
|
_____________8_____________22\n_____________|_____________|\n___5'-GAGACGCG_____________AACGU...AUC-3'\n______________CGGUUAUGUGAAG\n______________||:|||:||||||\n______________GCUAAUGCACUUC\n3'-AUU...UUUAG_____________AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
15 -- 21 |
43 -- 49 |
-16.824 kcal/mol |
1.08541 kcal/mol |
3.2693 kcal/mol |
8 22@LB@ | |@LB@ 5'-GAGACGCG AACGU...AUC-3'@LB@ CGGUUAUGUGAAG@LB@ ||:|||:||||||@LB@ GCUAAUGCACUUC@LB@3'-AUU...UUUAG AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -16.824 kcal/mol@LB@Unfolding Energy - mRNA 1.08541 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 9 -- 21@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 43 -- 49@LB@ |
120 |
0.003999 |
0.1172 |
b2582 |
trxC |
-9.28 |
0.072721 |
206 -- 219 |
4 -- 16 |
thioredoxin 2 |
|
_____________205____________220\n_____________|______________|\n5'-CUC...AUGAA____G_________AUUGU...UUG-3'\n______________UACC_UUUGUACCC\n______________||||_|:|||||||\n______________AUGG_AGACAUGGG\n3'-AUU...GUAGA______________AUG-5'\n_____________|______________|\n_____________17_____________3\n |
213 -- 219 |
4 -- 10 |
-18.1109 kcal/mol |
2.27225 kcal/mol |
6.59015 kcal/mol |
205 220@LB@ | |@LB@5'-CUC...AUGAA G AUUGU...UUG-3'@LB@ UACC UUUGUACCC@LB@ |||| |:|||||||@LB@ AUGG AGACAUGGG@LB@3'-AUU...GUAGA AUG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -18.1109 kcal/mol@LB@Unfolding Energy - mRNA 2.27225 kcal/mol@LB@Unfolding Energy - sRNA 6.59015 kcal/mol@LB@@LB@Position - mRNA 206 -- 219@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 4 -- 10@LB@ |
200 |
0.009019 |
0.1567 |
b3343 |
tusB |
-6.18 |
0.382258 |
145 -- 152 |
1 -- 8 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
_____________144______153\n_____________|________|\n5'-GCU...GCAGA________GCCGC...GCG-3'\n______________UGCCUUAC\n______________|:||:|||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
146 -- 152 |
1 -- 7 |
-9.97017 kcal/mol |
1.6972 kcal/mol |
2.11603 kcal/mol |
144 153@LB@ | |@LB@5'-GCU...GCAGA GCCGC...GCG-3'@LB@ UGCCUUAC@LB@ |:||:|||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -6.18 kcal/mol@LB@Hybridization Energy -9.97017 kcal/mol@LB@Unfolding Energy - mRNA 1.6972 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 145 -- 152@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
107 |
0.003396 |
0.1101 |
b3871 |
typA |
-9.79 |
0.052081 |
283 -- 294 |
47 -- 59 |
GTP-binding protein |
|
_____________282___________295\n_____________|_____________|\n5'-UGC...CCAAC_____________UCGACU-3'\n______________AAUCCGGU_ACGU\n______________||||||:|_||||\n______________UUAGGCUA_UGCA\n3'-AUU...UCGGU________A____CUUCA...AUG-5'\n_____________|_____________|\n_____________60____________46\n |
284 -- 290 |
52 -- 58 |
-13.0383 kcal/mol |
1.68034 kcal/mol |
1.56852 kcal/mol |
282 295@LB@ | |@LB@5'-UGC...CCAAC UCGACU-3'@LB@ AAUCCGGU ACGU@LB@ ||||||:| ||||@LB@ UUAGGCUA UGCA@LB@3'-AUU...UCGGU A CUUCA...AUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.79 kcal/mol@LB@Hybridization Energy -13.0383 kcal/mol@LB@Unfolding Energy - mRNA 1.68034 kcal/mol@LB@Unfolding Energy - sRNA 1.56852 kcal/mol@LB@@LB@Position - mRNA 283 -- 294@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 52 -- 58@LB@ |
146 |
0.005604 |
0.1342 |
b1637 |
tyrS |
-10.18 |
0.040102 |
30 -- 71 |
2 -- 50 |
tyrosyl-tRNA synthetase |
|
_____________29________________________________________________72\n_____________|_________________________________________________|\n5'-CAU...UACCA_______AAU___U_CG________U__U____________________AAAAG...CGA-3'\n______________GCGUGAA____GA_G__UGGAAGAU_GA_CGUCUUGC______ACCCUG\n______________:||||||____:|_|__||:|||||_||_|:||||:|______|||||:\n______________UGCACUU____UU_C__ACUUUCUA_CU_GUAGAAUG______UGGGAU\n3'-AUU...GCUAA_______CAUU__C_AG________U__U________GAGACA______G-5'\n_____________|_________________________________________________|\n_____________51________________________________________________1\n |
30 -- 36 |
44 -- 50 |
-35.883 kcal/mol |
13.0482 kcal/mol |
12.6769 kcal/mol |
29 72@LB@ | |@LB@5'-CAU...UACCA AAU U CG U U AAAAG...CGA-3'@LB@ GCGUGAA GA G UGGAAGAU GA CGUCUUGC ACCCUG@LB@ :|||||| :| | ||:||||| || |:||||:| |||||:@LB@ UGCACUU UU C ACUUUCUA CU GUAGAAUG UGGGAU@LB@3'-AUU...GCUAA CAUU C AG U U GAGACA G-5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -35.883 kcal/mol@LB@Unfolding Energy - mRNA 13.0482 kcal/mol@LB@Unfolding Energy - sRNA 12.6769 kcal/mol@LB@@LB@Position - mRNA 30 -- 71@LB@Position - sRNA 2 -- 50@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 44 -- 50@LB@ |
39 |
0.0004396 |
0.03766 |
b3669 |
uhpA |
-8.50 |
0.116685 |
77 -- 96 |
47 -- 66 |
response regulator in two-component regulatory system wtih UhpB |
|
_____________76___________________97\n_____________|____________________|\n5'-UCA...CGUAA______C_______CG____UUAAC...UUG-3'\n______________UCAGUC_GAUCCGA__AUGU\n______________||||:|_:||||||__|:||\n______________AGUCGG_UUAGGCU__UGCA\n3'-AUU...UUAUA______U_______AA____CUUCA...AUG-5'\n_____________|____________________|\n_____________67___________________46\n |
84 -- 90 |
53 -- 59 |
-21.6061 kcal/mol |
5.63687 kcal/mol |
7.4916 kcal/mol |
76 97@LB@ | |@LB@5'-UCA...CGUAA C CG UUAAC...UUG-3'@LB@ UCAGUC GAUCCGA AUGU@LB@ ||||:| :|||||| |:||@LB@ AGUCGG UUAGGCU UGCA@LB@3'-AUU...UUAUA U AA CUUCA...AUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -21.6061 kcal/mol@LB@Unfolding Energy - mRNA 5.63687 kcal/mol@LB@Unfolding Energy - sRNA 7.4916 kcal/mol@LB@@LB@Position - mRNA 77 -- 96@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 53 -- 59@LB@ |
185 |
0.008247 |
0.1556 |
b4195 |
ulaC |
-8.57 |
0.111851 |
181 -- 191 |
40 -- 50 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________180_________192\n_____________|___________|\n5'-GCG...GCAGG___________GGACG...UGG-3'\n______________AUGUGAAGUAA\n______________|:|||||||||\n______________UGCACUUCAUU\n3'-AUU...GCUAA___________UUCCA...AUG-5'\n_____________|___________|\n_____________51__________39\n |
185 -- 191 |
40 -- 46 |
-13.163 kcal/mol |
1.2893 kcal/mol |
3.32158 kcal/mol |
180 192@LB@ | |@LB@5'-GCG...GCAGG GGACG...UGG-3'@LB@ AUGUGAAGUAA@LB@ |:|||||||||@LB@ UGCACUUCAUU@LB@3'-AUU...GCUAA UUCCA...AUG-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -8.57 kcal/mol@LB@Hybridization Energy -13.163 kcal/mol@LB@Unfolding Energy - mRNA 1.2893 kcal/mol@LB@Unfolding Energy - sRNA 3.32158 kcal/mol@LB@@LB@Position - mRNA 181 -- 191@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 40 -- 46@LB@ |
196 |
0.008709 |
0.1558 |
b2498 |
upp |
-7.14 |
0.244299 |
249 -- 259 |
45 -- 56 |
uracil phosphoribosyltransferase |
|
_____________248__________260\n_____________|____________|\n5'-GGC...UGGGA____________GCAAG...CCG-3'\n______________CUGA_UGCGUGA\n______________|:||_|:|||||\n______________GGCU_AUGCACU\n3'-AUU...GUUUA____A_______UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
253 -- 259 |
45 -- 51 |
-12.6155 kcal/mol |
3.20986 kcal/mol |
2.27945 kcal/mol |
248 260@LB@ | |@LB@5'-GGC...UGGGA GCAAG...CCG-3'@LB@ CUGA UGCGUGA@LB@ |:|| |:|||||@LB@ GGCU AUGCACU@LB@3'-AUU...GUUUA A UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -7.14 kcal/mol@LB@Hybridization Energy -12.6155 kcal/mol@LB@Unfolding Energy - mRNA 3.20986 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 249 -- 259@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 45 -- 51@LB@ |
67 |
0.001147 |
0.05856 |
b2319 |
usg |
-10.96 |
0.023185 |
203 -- 221 |
18 -- 36 |
putative semialdehyde dehydrogenase |
|
_____________202_________________222\n_____________|___________________|\n5'-GAG...ACCAU_________C_________GCCGU...AAA-3'\n______________GUCUGAAGG_UGGAACAUU\n______________|||||||:|_|:||||||:\n______________CAGACUUUC_AUCUUGUAG\n3'-AUU...UUUUC_________U_________AAUGG...AUG-5'\n_____________|___________________|\n_____________37__________________17\n |
215 -- 221 |
18 -- 24 |
-22.956 kcal/mol |
5.32254 kcal/mol |
6.60045 kcal/mol |
202 222@LB@ | |@LB@5'-GAG...ACCAU C GCCGU...AAA-3'@LB@ GUCUGAAGG UGGAACAUU@LB@ |||||||:| |:||||||:@LB@ CAGACUUUC AUCUUGUAG@LB@3'-AUU...UUUUC U AAUGG...AUG-5'@LB@ | |@LB@ 37 17@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -22.956 kcal/mol@LB@Unfolding Energy - mRNA 5.32254 kcal/mol@LB@Unfolding Energy - sRNA 6.60045 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 18 -- 36@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 18 -- 24@LB@ |
38 |
0.0004278 |
0.03766 |
b3092 |
uxaC |
-12.53 |
0.006845 |
206 -- 269 |
1 -- 57 |
uronate isomerase |
|
_____________205_________________________________________________________________270\n_____________|___________________________________________________________________|\n5'-UUG...AUGAC____U_____AC_____AUUUC______UU_____CC____UUGCCC___G________ACGA____GCAAA...AUU-3'\n______________UCCG_UUAUG__UGAAG________CUG__AGAUA__GAAU______GCC_UCUGUAUC____CUAC\n______________||||_|||:|__|||||________|||__|||||__|||:______:||_||||||:|____||||\n______________AGGC_AAUGC__ACUUC________GAC__UCUAU__CUUG______UGG_AGACAUGG____GAUG\n3'-AUU...GGUUU____U____________AUUUUCCA___UU___________UAGAA_____________________-5'\n_____________|__________________________________________________________________|\n_____________58_________________________________________________________________1\n |
255 -- 261 |
5 -- 11 |
-36.5836 kcal/mol |
11.3711 kcal/mol |
12.7026 kcal/mol |
205 270@LB@ | |@LB@5'-UUG...AUGAC U AC AUUUC UU CC UUGCCC G ACGA GCAAA...AUU-3'@LB@ UCCG UUAUG UGAAG CUG AGAUA GAAU GCC UCUGUAUC CUAC@LB@ |||| |||:| ||||| ||| ||||| |||: :|| ||||||:| ||||@LB@ AGGC AAUGC ACUUC GAC UCUAU CUUG UGG AGACAUGG GAUG@LB@3'-AUU...GGUUU U AUUUUCCA UU UAGAA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -36.5836 kcal/mol@LB@Unfolding Energy - mRNA 11.3711 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 206 -- 269@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 5 -- 11@LB@ |
138 |
0.004994 |
0.127 |
b3633 |
waaA |
-9.37 |
0.068643 |
230 -- 259 |
48 -- 75 |
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) |
|
_____________229____________________________260\n_____________|______________________________|\n5'-UCG...CUUCU___CCU__________CU_______A____GCUCU...AAC-3'\n______________CUA___UAUUCAGCCG__GAUCUGG_UACG\n______________|||___|||||||||:__:|||:|:_||||\n______________GAU___AUAAGUCGGU__UUAGGCU_AUGC\n3'-AUU...CCGCC___UUU___________________A____ACUUC...AUG-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
248 -- 254 |
53 -- 59 |
-25.3567 kcal/mol |
8.33931 kcal/mol |
7.67232 kcal/mol |
229 260@LB@ | |@LB@5'-UCG...CUUCU CCU CU A GCUCU...AAC-3'@LB@ CUA UAUUCAGCCG GAUCUGG UACG@LB@ ||| |||||||||: :|||:|: ||||@LB@ GAU AUAAGUCGGU UUAGGCU AUGC@LB@3'-AUU...CCGCC UUU A ACUUC...AUG-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -25.3567 kcal/mol@LB@Unfolding Energy - mRNA 8.33931 kcal/mol@LB@Unfolding Energy - sRNA 7.67232 kcal/mol@LB@@LB@Position - mRNA 230 -- 259@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 53 -- 59@LB@ |
44 |
0.000471 |
0.03766 |
b3624 |
waaZ |
-7.10 |
0.250129 |
289 -- 295 |
1 -- 7 |
lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein |
|
_____________288_____296\n_____________|_______|\n5'-AGA...UUCGG_______AUCGC-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
289 -- 295 |
1 -- 7 |
-11.6335 kcal/mol |
2.52016 kcal/mol |
2.03949 kcal/mol |
288 296@LB@ | |@LB@5'-AGA...UUCGG AUCGC-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -11.6335 kcal/mol@LB@Unfolding Energy - mRNA 2.52016 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 289 -- 295@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 1 -- 7@LB@ |
116 |
0.003844 |
0.1165 |
b1004 |
wrbA |
-12.42 |
0.007537 |
123 -- 145 |
10 -- 35 |
NAD(P)H:quinone oxidoreductase |
|
_____________122________________________146\n_____________|__________________________|\n5'-UUA...UGCAC__________________________AAAUA...AAG-3'\n______________UCUGAAA___AGGACGUCUUAUCUUU\n______________|||||||___||:||:|||||:||:|\n______________AGACUUU___UCUUGUAGAAUGGAGA\n3'-AUU...UUUCC_______CUA________________CAUGG...AUG-5'\n_____________|__________________________|\n_____________36_________________________9\n |
133 -- 139 |
16 -- 22 |
-25.4666 kcal/mol |
4.32254 kcal/mol |
8.70229 kcal/mol |
122 146@LB@ | |@LB@5'-UUA...UGCAC AAAUA...AAG-3'@LB@ UCUGAAA AGGACGUCUUAUCUUU@LB@ ||||||| ||:||:|||||:||:|@LB@ AGACUUU UCUUGUAGAAUGGAGA@LB@3'-AUU...UUUCC CUA CAUGG...AUG-5'@LB@ | |@LB@ 36 9@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -25.4666 kcal/mol@LB@Unfolding Energy - mRNA 4.32254 kcal/mol@LB@Unfolding Energy - sRNA 8.70229 kcal/mol@LB@@LB@Position - mRNA 123 -- 145@LB@Position - sRNA 10 -- 35@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 16 -- 22@LB@ |
22 |
0.0001652 |
0.02641 |
b3566 |
xylF |
-9.94 |
0.047349 |
202 -- 240 |
1 -- 33 |
D-xylose transporter subunit |
|
_____________201_____________________________________241\n_____________|_______________________________________|\n5'-CGA...CACCA_____AUAA________C__CUCAC______C____C__UCCUG...AUG-3'\n______________UGAAA____AGAACAUU_UA_____CCUUUG_ACCU_AC\n______________|||||____|||||||:_||_____|||:||_|||:_||\n______________ACUUU____UCUUGUAG_AU_____GGAGAC_UGGG_UG\n3'-AUU...UCCAG_____CUA_________A_____________A____A__-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
212 -- 218 |
18 -- 24 |
-22.447 kcal/mol |
3.48977 kcal/mol |
9.04529 kcal/mol |
201 241@LB@ | |@LB@5'-CGA...CACCA AUAA C CUCAC C C UCCUG...AUG-3'@LB@ UGAAA AGAACAUU UA CCUUUG ACCU AC@LB@ ||||| |||||||: || |||:|| |||: ||@LB@ ACUUU UCUUGUAG AU GGAGAC UGGG UG@LB@3'-AUU...UCCAG CUA A A A -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -22.447 kcal/mol@LB@Unfolding Energy - mRNA 3.48977 kcal/mol@LB@Unfolding Energy - sRNA 9.04529 kcal/mol@LB@@LB@Position - mRNA 202 -- 240@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 18 -- 24@LB@ |
194 |
0.008663 |
0.1558 |
b0213 |
yafS |
-5.39 |
0.521143 |
17 -- 34 |
51 -- 73 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________16______________________35\n_____________|_______________________|\n5'-UGG...GGUGA_______________________GCCAG...UCA-3'\n______________GAAAUAU__GGCC___UCCGGUU\n______________:||||||__:|||___||||:||\n______________UUUUAUA__UCGG___AGGCUAA\n3'-AUU...GCCGA_______AG____UUU_______UGCAC...AUG-5'\n_____________|_______________________|\n_____________74______________________50\n |
28 -- 34 |
51 -- 57 |
-15.2768 kcal/mol |
3.69768 kcal/mol |
6.213 kcal/mol |
16 35@LB@ | |@LB@5'-UGG...GGUGA GCCAG...UCA-3'@LB@ GAAAUAU GGCC UCCGGUU@LB@ :|||||| :||| ||||:||@LB@ UUUUAUA UCGG AGGCUAA@LB@3'-AUU...GCCGA AG UUU UGCAC...AUG-5'@LB@ | |@LB@ 74 50@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.2768 kcal/mol@LB@Unfolding Energy - mRNA 3.69768 kcal/mol@LB@Unfolding Energy - sRNA 6.213 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 51 -- 73@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 51 -- 57@LB@ |
160 |
0.006479 |
0.1413 |
b0391 |
yaiE |
-12.00 |
0.010520 |
148 -- 162 |
1 -- 15 |
UPF0345 family protein |
|
_____________147_____________163\n_____________|_______________|\n5'-GAU...CCAGC_______GC______AGUGA...GCG-3'\n______________GCCUCUG__CCCUAU\n______________:||||||__|||||:\n______________UGGAGAC__GGGAUG\n3'-AUU...UAGAA_______AU______-5'\n_____________|______________|\n_____________16_____________1\n |
148 -- 154 |
9 -- 15 |
-21.6181 kcal/mol |
3.81195 kcal/mol |
5.82808 kcal/mol |
147 163@LB@ | |@LB@5'-GAU...CCAGC GC AGUGA...GCG-3'@LB@ GCCUCUG CCCUAU@LB@ :|||||| |||||:@LB@ UGGAGAC GGGAUG@LB@3'-AUU...UAGAA AU -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -21.6181 kcal/mol@LB@Unfolding Energy - mRNA 3.81195 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 9 -- 15@LB@ |
167 |
0.00683 |
0.1439 |
b0387 |
yaiI |
-9.54 |
0.061403 |
53 -- 70 |
51 -- 65 |
UPF0178 family protein |
|
_____________52_________________71\n_____________|__________________|\n5'-CAC...UGCCG_______UAAAA______UUCUU...CAA-3'\n______________CAGCCAA_____CCGAUU\n______________|||||||_____||||||\n______________GUCGGUU_____GGCUAA\n3'-AUU...UAUAA_______UA_________UGCAC...AUG-5'\n_____________|__________________|\n_____________66_________________50\n |
53 -- 59 |
59 -- 65 |
-16.8495 kcal/mol |
1.14267 kcal/mol |
6.18987 kcal/mol |
52 71@LB@ | |@LB@5'-CAC...UGCCG UAAAA UUCUU...CAA-3'@LB@ CAGCCAA CCGAUU@LB@ ||||||| ||||||@LB@ GUCGGUU GGCUAA@LB@3'-AUU...UAUAA UA UGCAC...AUG-5'@LB@ | |@LB@ 66 50@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -16.8495 kcal/mol@LB@Unfolding Energy - mRNA 1.14267 kcal/mol@LB@Unfolding Energy - sRNA 6.18987 kcal/mol@LB@@LB@Position - mRNA 53 -- 70@LB@Position - sRNA 51 -- 65@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 59 -- 65@LB@ |
86 |
0.002239 |
0.09158 |
b0434 |
yajG |
-10.16 |
0.040736 |
167 -- 223 |
4 -- 56 |
putative lipoprotein |
|
_____________166____________________________________________________________224\n_____________|______________________________________________________________|\n5'-UGG...UUUUA__AAAC___CU_________UC________CCC______G__CAAAAAAAU_____U_____GUUAG...UGC-3'\n______________CC____ACG_____UAAGAG__UCUGAGAG___GAACAU_UU_________CCUCU___CCC\n______________||____|||_____|||:||__|||||:||___||||||_||_________|||||___|||\n______________GG____UGC_____AUUUUC__AGACUUUC___CUUGUA_AA_________GGAGA___GGG\n3'-AUU...GUUUA__CUAA___ACUUC______C_________UAU______G__U_____________CAU___AUG-5'\n_____________|______________________________________________________________|\n_____________57_____________________________________________________________3\n |
187 -- 193 |
28 -- 34 |
-29.9553 kcal/mol |
7.1187 kcal/mol |
12.7017 kcal/mol |
166 224@LB@ | |@LB@5'-UGG...UUUUA AAAC CU UC CCC G CAAAAAAAU U GUUAG...UGC-3'@LB@ CC ACG UAAGAG UCUGAGAG GAACAU UU CCUCU CCC@LB@ || ||| |||:|| |||||:|| |||||| || ||||| |||@LB@ GG UGC AUUUUC AGACUUUC CUUGUA AA GGAGA GGG@LB@3'-AUU...GUUUA CUAA ACUUC C UAU G U CAU AUG-5'@LB@ | |@LB@ 57 3@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -29.9553 kcal/mol@LB@Unfolding Energy - mRNA 7.1187 kcal/mol@LB@Unfolding Energy - sRNA 12.7017 kcal/mol@LB@@LB@Position - mRNA 167 -- 223@LB@Position - sRNA 4 -- 56@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 28 -- 34@LB@ |
13 |
4.485e-05 |
0.01183 |
b0511 |
ybbW |
-13.60 |
0.002717 |
173 -- 210 |
18 -- 58 |
putative allantoin transporter |
|
_____________172________________________________________211\n_____________|__________________________________________|\n5'-UGG...ACGUU_______________AU____________UUU__________AGAGA...UUA-3'\n______________AUUCGA_UACGUGAA__UAAGAGG___GA___AUGGAACAUC\n______________||:|||_||||||||__|||:|||___||___||:|||||||\n______________UAGGCU_AUGCACUU__AUUUUCC___CU___UAUCUUGUAG\n3'-AUU...CGGUU______A________C________AGA__UUC__________AAUGG...AUG-5'\n_____________|__________________________________________|\n_____________59_________________________________________17\n |
204 -- 210 |
18 -- 24 |
-34.0515 kcal/mol |
8.25655 kcal/mol |
12.1809 kcal/mol |
172 211@LB@ | |@LB@5'-UGG...ACGUU AU UUU AGAGA...UUA-3'@LB@ AUUCGA UACGUGAA UAAGAGG GA AUGGAACAUC@LB@ ||:||| |||||||| |||:||| || ||:|||||||@LB@ UAGGCU AUGCACUU AUUUUCC CU UAUCUUGUAG@LB@3'-AUU...CGGUU A C AGA UUC AAUGG...AUG-5'@LB@ | |@LB@ 59 17@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -34.0515 kcal/mol@LB@Unfolding Energy - mRNA 8.25655 kcal/mol@LB@Unfolding Energy - sRNA 12.1809 kcal/mol@LB@@LB@Position - mRNA 173 -- 210@LB@Position - sRNA 18 -- 58@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 18 -- 24@LB@ |
110 |
0.003442 |
0.1101 |
b0528 |
ybcJ |
-8.36 |
0.126664 |
258 -- 272 |
21 -- 34 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________257_____________273\n_____________|_______________|\n5'-AGG...UGAAA________C______GAAAG...CGA-3'\n______________CUGGAAGG_UGGAGC\n______________|||:|||:_|:||:|\n______________GACUUUCU_AUCUUG\n3'-AUU...UUCCA_______________UAGAA...AUG-5'\n_____________|_______________|\n_____________35______________20\n |
259 -- 265 |
27 -- 33 |
-15.4755 kcal/mol |
3.05057 kcal/mol |
4.02417 kcal/mol |
257 273@LB@ | |@LB@5'-AGG...UGAAA C GAAAG...CGA-3'@LB@ CUGGAAGG UGGAGC@LB@ |||:|||: |:||:|@LB@ GACUUUCU AUCUUG@LB@3'-AUU...UUCCA UAGAA...AUG-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -8.36 kcal/mol@LB@Hybridization Energy -15.4755 kcal/mol@LB@Unfolding Energy - mRNA 3.05057 kcal/mol@LB@Unfolding Energy - sRNA 4.02417 kcal/mol@LB@@LB@Position - mRNA 258 -- 272@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 27 -- 33@LB@ |
182 |
0.007896 |
0.1519 |
b0686 |
ybfF |
-7.34 |
0.221050 |
164 -- 170 |
2 -- 8 |
acyl-CoA esterase |
|
_____________163_____171\n_____________|_______|\n5'-CUU...CAUAA_______ACCCG...GCG-3'\n______________UACCCUA\n______________|||||||\n______________AUGGGAU\n3'-AUU...GAGAC_______G-5'\n_____________|_______|\n_____________9_______1\n |
164 -- 170 |
2 -- 8 |
-9.7212 kcal/mol |
0.292492 kcal/mol |
2.11083 kcal/mol |
163 171@LB@ | |@LB@5'-CUU...CAUAA ACCCG...GCG-3'@LB@ UACCCUA@LB@ |||||||@LB@ AUGGGAU@LB@3'-AUU...GAGAC G-5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -7.34 kcal/mol@LB@Hybridization Energy -9.7212 kcal/mol@LB@Unfolding Energy - mRNA 0.292492 kcal/mol@LB@Unfolding Energy - sRNA 2.11083 kcal/mol@LB@@LB@Position - mRNA 164 -- 170@LB@Position - sRNA 2 -- 8@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 2 -- 8@LB@ |
150 |
0.00611 |
0.1406 |
b0735 |
ybgE |
-10.35 |
0.035619 |
38 -- 71 |
5 -- 31 |
putative inner membrane protein in cydABX-ybgE operon |
|
_____________37_________________________________72\n_____________|__________________________________|\n5'-CUG...CCAAA_______UU______AAC___CACUC________AAGUA...UUU-3'\n______________GAAGAUA__GAACGU___ACC_____UCUGUACU\n______________:||||||__||||:|___|||_____|||||||:\n______________UUUCUAU__CUUGUA___UGG_____AGACAUGG\n3'-AUU...CAGAC_______________GAA________________GAUG-5'\n_____________|__________________________________|\n_____________32_________________________________4\n |
65 -- 71 |
5 -- 11 |
-23.0678 kcal/mol |
4.68737 kcal/mol |
8.05162 kcal/mol |
37 72@LB@ | |@LB@5'-CUG...CCAAA UU AAC CACUC AAGUA...UUU-3'@LB@ GAAGAUA GAACGU ACC UCUGUACU@LB@ :|||||| ||||:| ||| |||||||:@LB@ UUUCUAU CUUGUA UGG AGACAUGG@LB@3'-AUU...CAGAC GAA GAUG-5'@LB@ | |@LB@ 32 4@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -23.0678 kcal/mol@LB@Unfolding Energy - mRNA 4.68737 kcal/mol@LB@Unfolding Energy - sRNA 8.05162 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 5 -- 31@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 5 -- 11@LB@ |
98 |
0.002849 |
0.1023 |
b0772 |
ybhC |
-6.17 |
0.383539 |
27 -- 33 |
49 -- 55 |
acyl-CoA thioesterase lipoprotein |
|
_____________26______34\n_____________|_______|\n5'-UCA...CGCCU_______UGCGA...AUC-3'\n______________CGAUUAC\n______________|||||||\n______________GCUAAUG\n3'-AUU...UUUAG_______CACUU...AUG-5'\n_____________|_______|\n_____________56______48\n |
27 -- 33 |
49 -- 55 |
-7.86935 kcal/mol |
1.39337 kcal/mol |
0.311712 kcal/mol |
26 34@LB@ | |@LB@5'-UCA...CGCCU UGCGA...AUC-3'@LB@ CGAUUAC@LB@ |||||||@LB@ GCUAAUG@LB@3'-AUU...UUUAG CACUU...AUG-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -7.86935 kcal/mol@LB@Unfolding Energy - mRNA 1.39337 kcal/mol@LB@Unfolding Energy - sRNA 0.311712 kcal/mol@LB@@LB@Position - mRNA 27 -- 33@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 49 -- 55@LB@ |
2 |
0 |
0 |
b0796 |
ybiH |
-7.52 |
0.201543 |
119 -- 140 |
54 -- 76 |
DUF1956 domain-containing tetR family putative transcriptional regulator |
b1013 |
_____________118_____________________141\n_____________|_______________________|\n5'-CGG...GCGUU________UC_______UA____GACAA...CCA-3'\n______________GCUAAAAU__UUAGCCA___CUG\n______________||||||||__|:|||||___|:|\n______________CGAUUUUA__AGUCGGU___GGC\n3'-AUU...CCCGC________UA_______UUA___UAAUG...AUG-5'\n_____________|_______________________|\n_____________77______________________53\n |
129 -- 135 |
60 -- 66 |
-19.7488 kcal/mol |
5.88928 kcal/mol |
6.3634 kcal/mol |
118 141@LB@ | |@LB@5'-CGG...GCGUU UC UA GACAA...CCA-3'@LB@ GCUAAAAU UUAGCCA CUG@LB@ |||||||| |:||||| |:|@LB@ CGAUUUUA AGUCGGU GGC@LB@3'-AUU...CCCGC UA UUA UAAUG...AUG-5'@LB@ | |@LB@ 77 53@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -19.7488 kcal/mol@LB@Unfolding Energy - mRNA 5.88928 kcal/mol@LB@Unfolding Energy - sRNA 6.3634 kcal/mol@LB@@LB@Position - mRNA 119 -- 140@LB@Position - sRNA 54 -- 76@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 60 -- 66@LB@ |
191 |
0.008587 |
0.1558 |
b0823 |
ybiW |
-9.49 |
0.063221 |
47 -- 54 |
1 -- 8 |
putative pyruvate formate lyase |
b3951 |
_____________46_______55\n_____________|________|\n5'-ACC...UUUUC________CACAC...CGC-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
48 -- 54 |
1 -- 7 |
-12.4662 kcal/mol |
0.878635 kcal/mol |
2.11603 kcal/mol |
46 55@LB@ | |@LB@5'-ACC...UUUUC CACAC...CGC-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -12.4662 kcal/mol@LB@Unfolding Energy - mRNA 0.878635 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 47 -- 54@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 1 -- 7@LB@ |
104 |
0.003257 |
0.1101 |
b0858 |
ybjO |
-8.07 |
0.149394 |
228 -- 257 |
2 -- 30 |
DUF2593 family inner membrane protein |
|
_____________227______________________________258\n_____________|________________________________|\n5'-AUG...UUUUU____A__________C_____A__CU_G____AAUGU...UUA-3'\n______________AAGA___AACAUCUU_AUCUC_UG__C_CCUG\n______________||||___||||||||_|:|||_||__|_|||:\n______________UUCU___UUGUAGAA_UGGAG_AC__G_GGAU\n3'-AUU...AGACU____AUC_________________AU______G-5'\n_____________|________________________________|\n_____________31_______________________________1\n |
234 -- 240 |
16 -- 22 |
-20.5501 kcal/mol |
4.45089 kcal/mol |
8.05308 kcal/mol |
227 258@LB@ | |@LB@5'-AUG...UUUUU A C A CU G AAUGU...UUA-3'@LB@ AAGA AACAUCUU AUCUC UG C CCUG@LB@ |||| |||||||| |:||| || | |||:@LB@ UUCU UUGUAGAA UGGAG AC G GGAU@LB@3'-AUU...AGACU AUC AU G-5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -20.5501 kcal/mol@LB@Unfolding Energy - mRNA 4.45089 kcal/mol@LB@Unfolding Energy - sRNA 8.05308 kcal/mol@LB@@LB@Position - mRNA 228 -- 257@LB@Position - sRNA 2 -- 30@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 16 -- 22@LB@ |
106 |
0.003365 |
0.1101 |
b0955 |
ycbZ |
-10.52 |
0.031644 |
269 -- 288 |
48 -- 66 |
putative peptidase |
|
_____________268__________________289\n_____________|____________________|\n5'-UUG...UUUGC_______C_________A__AAAAC...CUU-3'\n______________UCAGCCA_AUUUGAUUG_CG\n______________|||||||_||::||||:_||\n______________AGUCGGU_UAGGCUAAU_GC\n3'-AUU...UUAUA_______U____________ACUUC...AUG-5'\n_____________|____________________|\n_____________67___________________47\n |
279 -- 285 |
50 -- 56 |
-21.5915 kcal/mol |
3.60671 kcal/mol |
7.48271 kcal/mol |
268 289@LB@ | |@LB@5'-UUG...UUUGC C A AAAAC...CUU-3'@LB@ UCAGCCA AUUUGAUUG CG@LB@ ||||||| ||::||||: ||@LB@ AGUCGGU UAGGCUAAU GC@LB@3'-AUU...UUAUA U ACUUC...AUG-5'@LB@ | |@LB@ 67 47@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -21.5915 kcal/mol@LB@Unfolding Energy - mRNA 3.60671 kcal/mol@LB@Unfolding Energy - sRNA 7.48271 kcal/mol@LB@@LB@Position - mRNA 269 -- 288@LB@Position - sRNA 48 -- 66@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
96 |
0.002764 |
0.1002 |
b1034 |
ycdX |
-5.77 |
0.451964 |
102 -- 115 |
32 -- 46 |
alkaline phosphatase |
|
_____________101_____________116\n_____________|_______________|\n5'-GGC...AAAAA_______________CGGGC...AAC-3'\n______________GGGG_AGAGGGUCUG\n______________|::|_|:|:||||||\n______________CUUC_UUUUCCAGAC\n3'-AUU...AUGCA____A__________UUUCU...AUG-5'\n_____________|_______________|\n_____________47______________31\n |
109 -- 115 |
32 -- 38 |
-16.8058 kcal/mol |
3.54072 kcal/mol |
7.24668 kcal/mol |
101 116@LB@ | |@LB@5'-GGC...AAAAA CGGGC...AAC-3'@LB@ GGGG AGAGGGUCUG@LB@ |::| |:|:||||||@LB@ CUUC UUUUCCAGAC@LB@3'-AUU...AUGCA A UUUCU...AUG-5'@LB@ | |@LB@ 47 31@LB@@LB@@LB@Energy -5.77 kcal/mol@LB@Hybridization Energy -16.8058 kcal/mol@LB@Unfolding Energy - mRNA 3.54072 kcal/mol@LB@Unfolding Energy - sRNA 7.24668 kcal/mol@LB@@LB@Position - mRNA 102 -- 115@LB@Position - sRNA 32 -- 46@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 32 -- 38@LB@ |
115 |
0.00375 |
0.1147 |
b1057 |
yceJ |
-5.38 |
0.522888 |
37 -- 59 |
1 -- 23 |
putative cytochrome b561 |
|
_____________36_______________________60\n_____________|________________________|\n5'-UGA...CACCA_______C__AUG___A_______UAAAC...UGU-3'\n______________GACAUCU_UG___CUG_ACCC_AC\n______________:||||||_|:___|||_||||_||\n______________UUGUAGA_AU___GAC_UGGG_UG\n3'-AUU...CUAUC__________GGA___A____A__-5'\n_____________|_______________________|\n_____________24______________________1\n |
37 -- 43 |
17 -- 23 |
-17.2281 kcal/mol |
3.85652 kcal/mol |
8.01506 kcal/mol |
36 60@LB@ | |@LB@5'-UGA...CACCA C AUG A UAAAC...UGU-3'@LB@ GACAUCU UG CUG ACCC AC@LB@ :|||||| |: ||| |||| ||@LB@ UUGUAGA AU GAC UGGG UG@LB@3'-AUU...CUAUC GGA A A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -5.38 kcal/mol@LB@Hybridization Energy -17.2281 kcal/mol@LB@Unfolding Energy - mRNA 3.85652 kcal/mol@LB@Unfolding Energy - sRNA 8.01506 kcal/mol@LB@@LB@Position - mRNA 37 -- 59@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 17 -- 23@LB@ |
68 |
0.001174 |
0.05856 |
b1253 |
yciA |
-8.30 |
0.130708 |
128 -- 145 |
3 -- 21 |
acyl-CoA esterase |
|
_____________127__________________146\n_____________|____________________|\n5'-UUU...CGCUG______________UC____CAGGA...GGU-3'\n______________UAUCU__CCUCUGU__UCCU\n______________:||||__|||||||__:|||\n______________GUAGA__GGAGACA__GGGA\n3'-AUU...AUCUU_____AU_______U_____UG-5'\n_____________|____________________|\n_____________22___________________2\n |
133 -- 139 |
8 -- 14 |
-17.321 kcal/mol |
1.04882 kcal/mol |
7.99052 kcal/mol |
127 146@LB@ | |@LB@5'-UUU...CGCUG UC CAGGA...GGU-3'@LB@ UAUCU CCUCUGU UCCU@LB@ :|||| ||||||| :|||@LB@ GUAGA GGAGACA GGGA@LB@3'-AUU...AUCUU AU U UG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -8.30 kcal/mol@LB@Hybridization Energy -17.321 kcal/mol@LB@Unfolding Energy - mRNA 1.04882 kcal/mol@LB@Unfolding Energy - sRNA 7.99052 kcal/mol@LB@@LB@Position - mRNA 128 -- 145@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 8 -- 14@LB@ |
5 |
1.055e-05 |
0.007422 |
b1287 |
yciW |
-9.98 |
0.045809 |
266 -- 289 |
4 -- 27 |
putative oxidoreductase |
|
_____________265______________________290\n_____________|________________________|\n5'-GUC...ACGGA___U______C________GU___GGAAG...CAA-3'\n______________GUA_GACGUU_UGCCUCUG__CCC\n______________:||_:||:|:_|:||||||__|||\n______________UAU_UUGUAG_AUGGAGAC__GGG\n3'-AUU...CUUUC___C______A________AU___AUG-5'\n_____________|________________________|\n_____________28_______________________3\n |
278 -- 284 |
9 -- 15 |
-26.8114 kcal/mol |
8.80708 kcal/mol |
8.0435 kcal/mol |
265 290@LB@ | |@LB@5'-GUC...ACGGA U C GU GGAAG...CAA-3'@LB@ GUA GACGUU UGCCUCUG CCC@LB@ :|| :||:|: |:|||||| |||@LB@ UAU UUGUAG AUGGAGAC GGG@LB@3'-AUU...CUUUC C A AU AUG-5'@LB@ | |@LB@ 28 3@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -26.8114 kcal/mol@LB@Unfolding Energy - mRNA 8.80708 kcal/mol@LB@Unfolding Energy - sRNA 8.0435 kcal/mol@LB@@LB@Position - mRNA 266 -- 289@LB@Position - sRNA 4 -- 27@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 9 -- 15@LB@ |
59 |
0.0008996 |
0.0531 |
b1310 |
ycjN |
-10.87 |
0.024752 |
113 -- 129 |
42 -- 59 |
putative ABC sugar transporter periplasmic binding protein |
|
_____________112________________130\n_____________|__________________|\n5'-UUC...GUCGG__________________UGAUA...UUA-3'\n______________GAUCUGAUUA_GUGAAGU\n______________:|||:|||||_|||||||\n______________UUAGGCUAAU_CACUUCA\n3'-AUU...UCGGU__________G_______UUUUC...AUG-5'\n_____________|__________________|\n_____________60_________________41\n |
123 -- 129 |
42 -- 48 |
-20.0101 kcal/mol |
5.87569 kcal/mol |
3.27976 kcal/mol |
112 130@LB@ | |@LB@5'-UUC...GUCGG UGAUA...UUA-3'@LB@ GAUCUGAUUA GUGAAGU@LB@ :|||:||||| |||||||@LB@ UUAGGCUAAU CACUUCA@LB@3'-AUU...UCGGU G UUUUC...AUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -20.0101 kcal/mol@LB@Unfolding Energy - mRNA 5.87569 kcal/mol@LB@Unfolding Energy - sRNA 3.27976 kcal/mol@LB@@LB@Position - mRNA 113 -- 129@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 42 -- 48@LB@ |
175 |
0.007291 |
0.1466 |
b1498 |
ydeN |
-8.19 |
0.139530 |
95 -- 124 |
45 -- 67 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________94_____________________________125\n_____________|______________________________|\n5'-AUU...CUUUU______________CUAUCUCU________CUAAC...UAA-3'\n______________UUUAGCUAAAUCUG________UUAUGUGA\n______________||:|||:|||||:|________|||:||||\n______________AAGUCGGUUUAGGC________AAUGCACU\n3'-AUU...UUUAU______________U_______________UCAUU...AUG-5'\n_____________|______________________________|\n_____________68_____________________________44\n |
118 -- 124 |
45 -- 51 |
-22.2428 kcal/mol |
5.90754 kcal/mol |
8.16749 kcal/mol |
94 125@LB@ | |@LB@5'-AUU...CUUUU CUAUCUCU CUAAC...UAA-3'@LB@ UUUAGCUAAAUCUG UUAUGUGA@LB@ ||:|||:|||||:| |||:||||@LB@ AAGUCGGUUUAGGC AAUGCACU@LB@3'-AUU...UUUAU U UCAUU...AUG-5'@LB@ | |@LB@ 68 44@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -22.2428 kcal/mol@LB@Unfolding Energy - mRNA 5.90754 kcal/mol@LB@Unfolding Energy - sRNA 8.16749 kcal/mol@LB@@LB@Position - mRNA 95 -- 124@LB@Position - sRNA 45 -- 67@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
66 |
0.001146 |
0.05856 |
b1657 |
ydhP |
-3.95 |
0.782289 |
131 -- 139 |
49 -- 57 |
putative MFS transporter inner membrane protein |
|
_____________130_______140\n_____________|_________|\n5'-UCG...UUUUU_G_______UGUCA...GCG-3'\n______________U_UGAUUGC\n______________|_:||||:|\n______________A_GCUAAUG\n3'-AUU...GGUUU_G_______CACUU...AUG-5'\n_____________|_________|\n_____________58________48\n |
133 -- 139 |
49 -- 55 |
-6.30818 kcal/mol |
2.04371 kcal/mol |
0.318327 kcal/mol |
130 140@LB@ | |@LB@5'-UCG...UUUUU G UGUCA...GCG-3'@LB@ U UGAUUGC@LB@ | :||||:|@LB@ A GCUAAUG@LB@3'-AUU...GGUUU G CACUU...AUG-5'@LB@ | |@LB@ 58 48@LB@@LB@@LB@Energy -3.95 kcal/mol@LB@Hybridization Energy -6.30818 kcal/mol@LB@Unfolding Energy - mRNA 2.04371 kcal/mol@LB@Unfolding Energy - sRNA 0.318327 kcal/mol@LB@@LB@Position - mRNA 131 -- 139@LB@Position - sRNA 49 -- 57@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 49 -- 55@LB@ |
113 |
0.003703 |
0.1147 |
b1728 |
ydjM |
-2.69 |
0.937889 |
161 -- 167 |
1 -- 7 |
inner membrane protein regulated by LexA |
|
_____________160_____168\n_____________|_______|\n5'-CGC...UAAAA_______ACUGU...AUA-3'\n______________AUCCUAU\n______________|:||||:\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-7.15055 kcal/mol |
2.44298 kcal/mol |
2.03949 kcal/mol |
160 168@LB@ | |@LB@5'-CGC...UAAAA ACUGU...AUA-3'@LB@ AUCCUAU@LB@ |:||||:@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -2.69 kcal/mol@LB@Hybridization Energy -7.15055 kcal/mol@LB@Unfolding Energy - mRNA 2.44298 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
181 |
0.007802 |
0.1516 |
b1797 |
yeaR |
-7.07 |
0.254063 |
142 -- 149 |
2 -- 9 |
DUF1971 family protein nitrate-inducible |
|
_____________141______150\n_____________|________|\n5'-UGC...CAGGC________AAACG...AAG-3'\n______________GUACCCUG\n______________|||||||:\n______________CAUGGGAU\n3'-AUU...GGAGA________G-5'\n_____________|________|\n_____________10_______1\n |
143 -- 149 |
2 -- 8 |
-12.2602 kcal/mol |
3.09143 kcal/mol |
2.12684 kcal/mol |
141 150@LB@ | |@LB@5'-UGC...CAGGC AAACG...AAG-3'@LB@ GUACCCUG@LB@ |||||||:@LB@ CAUGGGAU@LB@3'-AUU...GGAGA G-5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.07 kcal/mol@LB@Hybridization Energy -12.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.09143 kcal/mol@LB@Unfolding Energy - sRNA 2.12684 kcal/mol@LB@@LB@Position - mRNA 142 -- 149@LB@Position - sRNA 2 -- 9@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 2 -- 8@LB@ |
9 |
1.988e-05 |
0.007771 |
b1985 |
yeeO |
-11.51 |
0.015356 |
224 -- 255 |
1 -- 39 |
putative multdrug exporter MATE family |
|
_____________223_____________________________________256\n_____________|_______________________________________|\n5'-GAU...CAAUU______GGCUUU___________________________GCCAG...GCU-3'\n______________AAGGUC_________GAAUAUCU__CCUCUG__CUUUAC\n______________||||||_________|||:||||__||||||__|::|||\n______________UUCCAG_________CUUGUAGA__GGAGAC__GGGAUG\n3'-AUU...UCAUU______ACUUUCUAU________AU______AU______-5'\n_____________|______________________________________|\n_____________40_____________________________________1\n |
237 -- 243 |
17 -- 23 |
-28.0657 kcal/mol |
5.21805 kcal/mol |
11.3576 kcal/mol |
223 256@LB@ | |@LB@5'-GAU...CAAUU GGCUUU GCCAG...GCU-3'@LB@ AAGGUC GAAUAUCU CCUCUG CUUUAC@LB@ |||||| |||:|||| |||||| |::|||@LB@ UUCCAG CUUGUAGA GGAGAC GGGAUG@LB@3'-AUU...UCAUU ACUUUCUAU AU AU -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -28.0657 kcal/mol@LB@Unfolding Energy - mRNA 5.21805 kcal/mol@LB@Unfolding Energy - sRNA 11.3576 kcal/mol@LB@@LB@Position - mRNA 224 -- 255@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 17 -- 23@LB@ |
131 |
0.004483 |
0.1204 |
b2069 |
yegD |
-6.32 |
0.360285 |
213 -- 222 |
48 -- 57 |
Hsp70 chaperone family protein |
|
_____________212________223\n_____________|__________|\n5'-CAC...UUGGU__________GUACA...UGC-3'\n______________UUUGAUUACG\n______________|::|||||||\n______________AGGCUAAUGC\n3'-AUU...GGUUU__________ACUUC...AUG-5'\n_____________|__________|\n_____________58_________47\n |
216 -- 222 |
48 -- 54 |
-10.2333 kcal/mol |
2.33693 kcal/mol |
1.55976 kcal/mol |
212 223@LB@ | |@LB@5'-CAC...UUGGU GUACA...UGC-3'@LB@ UUUGAUUACG@LB@ |::|||||||@LB@ AGGCUAAUGC@LB@3'-AUU...GGUUU ACUUC...AUG-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -10.2333 kcal/mol@LB@Unfolding Energy - mRNA 2.33693 kcal/mol@LB@Unfolding Energy - sRNA 1.55976 kcal/mol@LB@@LB@Position - mRNA 213 -- 222@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 48 -- 54@LB@ |
84 |
0.002084 |
0.08729 |
b2067 |
yegE |
-5.99 |
0.414041 |
137 -- 150 |
1 -- 15 |
putative diguanylate cyclase |
|
_____________136_____________151\n_____________|_______________|\n5'-AGU...GUAAA___________A___AUAAA...CGC-3'\n______________ACUUUUGUACU__GC\n______________||:|:|||||:__:|\n______________UGGAGACAUGG__UG\n3'-AUU...UAGAA___________GA__-5'\n_____________|______________|\n_____________16_____________1\n |
141 -- 147 |
5 -- 11 |
-13.6769 kcal/mol |
1.88278 kcal/mol |
5.82808 kcal/mol |
136 151@LB@ | |@LB@5'-AGU...GUAAA A AUAAA...CGC-3'@LB@ ACUUUUGUACU GC@LB@ ||:|:|||||: :|@LB@ UGGAGACAUGG UG@LB@3'-AUU...UAGAA GA -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -13.6769 kcal/mol@LB@Unfolding Energy - mRNA 1.88278 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 137 -- 150@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 5 -- 11@LB@ |
11 |
3.674e-05 |
0.01134 |
b2099 |
yegU |
-10.44 |
0.033453 |
166 -- 229 |
3 -- 59 |
ADP-ribosylglycohydrolase family protein |
|
_____________165_________________________________________________________________230\n_____________|___________________________________________________________________|\n5'-GUG...UCGAU____G____AU____U___CAC______AAGUUAAA_____AC________AU______G_______UUAUG...CAC-3'\n______________GAUC_CGAU__UGCG_UGA___AAGGGG________UGAAA___AGAACGU____UCUC_GUGCUCU\n______________:|||_||||__|:||_|||___||::||________|||||___|||||:|____:|||_||:|:||\n______________UUAG_GCUA__AUGC_ACU___UUUUCC________ACUUU___UCUUGUA____GGAG_CAUGGGA\n3'-AUU...UCGGU___________________UCA______AG___________CUA_______GAAU____A_______UG-5'\n_____________|___________________________________________________________________|\n_____________60__________________________________________________________________2\n |
223 -- 229 |
3 -- 9 |
-36.2809 kcal/mol |
13.1575 kcal/mol |
12.7026 kcal/mol |
165 230@LB@ | |@LB@5'-GUG...UCGAU G AU U CAC AAGUUAAA AC AU G UUAUG...CAC-3'@LB@ GAUC CGAU UGCG UGA AAGGGG UGAAA AGAACGU UCUC GUGCUCU@LB@ :||| |||| |:|| ||| ||::|| ||||| |||||:| :||| ||:|:||@LB@ UUAG GCUA AUGC ACU UUUUCC ACUUU UCUUGUA GGAG CAUGGGA@LB@3'-AUU...UCGGU UCA AG CUA GAAU A UG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -36.2809 kcal/mol@LB@Unfolding Energy - mRNA 13.1575 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 166 -- 229@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 3 -- 9@LB@ |
114 |
0.003723 |
0.1147 |
b2327 |
yfcA |
-8.38 |
0.125082 |
22 -- 29 |
1 -- 8 |
TauE/TSUP family inner membrane protein |
|
_____________21_______30\n_____________|________|\n5'-CAU...UACGU________CGAUA...GUG-3'\n______________UGCCCUGC\n______________|:||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
23 -- 29 |
1 -- 7 |
-12.241 kcal/mol |
1.76759 kcal/mol |
2.11603 kcal/mol |
21 30@LB@ | |@LB@5'-CAU...UACGU CGAUA...GUG-3'@LB@ UGCCCUGC@LB@ |:||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -12.241 kcal/mol@LB@Unfolding Energy - mRNA 1.76759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 22 -- 29@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 1 -- 7@LB@ |
172 |
0.007198 |
0.1466 |
b2395 |
yfeA |
-7.88 |
0.166321 |
272 -- 292 |
49 -- 69 |
putative diguanylate cyclase |
|
_____________271____________________293\n_____________|______________________|\n5'-ACC...GUACU__________UC____UU____UUCGCCAC-3'\n______________UAUUCAGCUA___CCG__UUAU\n______________||||||||:|___|||__|||:\n______________AUAAGUCGGU___GGC__AAUG\n3'-AUU...AUUUU__________UUA___U_____CACUU...AUG-5'\n_____________|______________________|\n_____________70_____________________48\n |
275 -- 281 |
60 -- 66 |
-16.2546 kcal/mol |
2.18624 kcal/mol |
6.21499 kcal/mol |
271 293@LB@ | |@LB@5'-ACC...GUACU UC UU UUCGCCAC-3'@LB@ UAUUCAGCUA CCG UUAU@LB@ ||||||||:| ||| |||:@LB@ AUAAGUCGGU GGC AAUG@LB@3'-AUU...AUUUU UUA U CACUU...AUG-5'@LB@ | |@LB@ 70 48@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -16.2546 kcal/mol@LB@Unfolding Energy - mRNA 2.18624 kcal/mol@LB@Unfolding Energy - sRNA 6.21499 kcal/mol@LB@@LB@Position - mRNA 272 -- 292@LB@Position - sRNA 49 -- 69@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 60 -- 66@LB@ |
95 |
0.002686 |
0.09947 |
b2419 |
yfeK |
-12.78 |
0.005552 |
57 -- 65 |
1 -- 9 |
uncharacterized protein |
|
_____________56________66\n_____________|_________|\n5'-GUU...CUGCA_________UCUUA...UGG-3'\n______________GUGCCCUAC\n______________||:||||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
59 -- 65 |
1 -- 7 |
-16.152 kcal/mol |
1.26264 kcal/mol |
2.12872 kcal/mol |
56 66@LB@ | |@LB@5'-GUU...CUGCA UCUUA...UGG-3'@LB@ GUGCCCUAC@LB@ ||:||||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -16.152 kcal/mol@LB@Unfolding Energy - mRNA 1.26264 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 57 -- 65@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 1 -- 7@LB@ |
192 |
0.008619 |
0.1558 |
b2561 |
yfhH |
-12.96 |
0.004772 |
194 -- 222 |
4 -- 32 |
putative DNA-binding transcriptional regulator |
|
_____________193____________________________223\n_____________|______________________________|\n5'-CCU...GCGAG________U_____G_______________GUCAG...GCC-3'\n______________GAAAGAUA_GAACG_CUUACUUC_GUAUCC\n______________||||||||_||||:_|||||:||_|||:||\n______________CUUUCUAU_CUUGU_GAAUGGAG_CAUGGG\n3'-AUU...CCAGA______________A________A______AUG-5'\n_____________|______________________________|\n_____________33_____________________________3\n |
195 -- 201 |
25 -- 31 |
-31.2741 kcal/mol |
9.51226 kcal/mol |
8.82263 kcal/mol |
193 223@LB@ | |@LB@5'-CCU...GCGAG U G GUCAG...GCC-3'@LB@ GAAAGAUA GAACG CUUACUUC GUAUCC@LB@ |||||||| ||||: |||||:|| |||:||@LB@ CUUUCUAU CUUGU GAAUGGAG CAUGGG@LB@3'-AUU...CCAGA A A AUG-5'@LB@ | |@LB@ 33 3@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -31.2741 kcal/mol@LB@Unfolding Energy - mRNA 9.51226 kcal/mol@LB@Unfolding Energy - sRNA 8.82263 kcal/mol@LB@@LB@Position - mRNA 194 -- 222@LB@Position - sRNA 4 -- 32@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 25 -- 31@LB@ |
139 |
0.005017 |
0.127 |
b2603 |
yfiR |
-11.92 |
0.011246 |
223 -- 243 |
1 -- 19 |
putative periplasmic inhibitor of YfiN activity |
|
_____________222___________________244\n_____________|_____________________|\n5'-GUA...ACUGU___________AUUC______UGACG...GUA-3'\n______________UCUUACUUCUG____UCCUGC\n______________||||||:||||____:|||:|\n______________AGAAUGGAGAC____GGGAUG\n3'-AUU...CUUGU___________AU________-5'\n_____________|____________________|\n_____________20___________________1\n |
227 -- 233 |
9 -- 15 |
-21.8705 kcal/mol |
2.00959 kcal/mol |
7.96751 kcal/mol |
222 244@LB@ | |@LB@5'-GUA...ACUGU AUUC UGACG...GUA-3'@LB@ UCUUACUUCUG UCCUGC@LB@ ||||||:|||| :|||:|@LB@ AGAAUGGAGAC GGGAUG@LB@3'-AUU...CUUGU AU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -21.8705 kcal/mol@LB@Unfolding Energy - mRNA 2.00959 kcal/mol@LB@Unfolding Energy - sRNA 7.96751 kcal/mol@LB@@LB@Position - mRNA 223 -- 243@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 9 -- 15@LB@ |
161 |
0.006501 |
0.1413 |
b2682 |
ygaZ |
-8.47 |
0.118892 |
208 -- 214 |
1 -- 7 |
putative L-valine exporter norvaline resistance protein |
|
_____________207_____215\n_____________|_______|\n5'-UGG...GGAAA_______UCCAC...CCU-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
208 -- 214 |
1 -- 7 |
-11.2451 kcal/mol |
0.761293 kcal/mol |
2.03949 kcal/mol |
207 215@LB@ | |@LB@5'-UGG...GGAAA UCCAC...CCU-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -11.2451 kcal/mol@LB@Unfolding Energy - mRNA 0.761293 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 208 -- 214@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 1 -- 7@LB@ |
60 |
0.0009057 |
0.0531 |
b2740 |
ygbN |
-7.72 |
0.181404 |
16 -- 72 |
3 -- 58 |
putative transporter |
|
_____________15__________________________________________________________73\n_____________|___________________________________________________________|\n5'-GUG...CGCCU_______G_G_____A__UC___G_____UC___UGU______AA__________G___CACCG...UCC-3'\n______________GUUCGAU_A_GUGGG_UA__AGG_CUGGA__GGU___GAAUAU___ACCUC_GUG_CCU\n______________:|:||||_|_|||::_||__|||_|||:|__|:|___|||:||___|||||_||:_|||\n______________UAGGCUA_U_CACUU_AU__UCC_GACUU__CUA___CUUGUA___UGGAG_CAU_GGA\n3'-AUU...CGGUU_______A_G_____C__UU___A_____U____U________GAA_____A___G___UG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
16 -- 22 |
52 -- 58 |
-40.891 kcal/mol |
20.495 kcal/mol |
12.7026 kcal/mol |
15 73@LB@ | |@LB@5'-GUG...CGCCU G G A UC G UC UGU AA G CACCG...UCC-3'@LB@ GUUCGAU A GUGGG UA AGG CUGGA GGU GAAUAU ACCUC GUG CCU@LB@ :|:|||| | |||:: || ||| |||:| |:| |||:|| ||||| ||: |||@LB@ UAGGCUA U CACUU AU UCC GACUU CUA CUUGUA UGGAG CAU GGA@LB@3'-AUU...CGGUU A G C UU A U U GAA A G UG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -7.72 kcal/mol@LB@Hybridization Energy -40.891 kcal/mol@LB@Unfolding Energy - mRNA 20.495 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 16 -- 72@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 52 -- 58@LB@ |
156 |
0.006236 |
0.1406 |
b2922 |
yggE |
-5.46 |
0.507768 |
199 -- 207 |
42 -- 50 |
oxidative stress defense protein |
|
_____________198_______208\n_____________|_________|\n5'-GCA...GACUA_________UCAAA...CCG-3'\n______________ACGUGAAGU\n______________|||||||||\n______________UGCACUUCA\n3'-AUU...GCUAA_________UUUUC...AUG-5'\n_____________|_________|\n_____________51________41\n |
201 -- 207 |
42 -- 48 |
-12.7727 kcal/mol |
4.07491 kcal/mol |
3.2504 kcal/mol |
198 208@LB@ | |@LB@5'-GCA...GACUA UCAAA...CCG-3'@LB@ ACGUGAAGU@LB@ |||||||||@LB@ UGCACUUCA@LB@3'-AUU...GCUAA UUUUC...AUG-5'@LB@ | |@LB@ 51 41@LB@@LB@@LB@Energy -5.46 kcal/mol@LB@Hybridization Energy -12.7727 kcal/mol@LB@Unfolding Energy - mRNA 4.07491 kcal/mol@LB@Unfolding Energy - sRNA 3.2504 kcal/mol@LB@@LB@Position - mRNA 199 -- 207@LB@Position - sRNA 42 -- 50@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 42 -- 48@LB@ |
69 |
0.001182 |
0.05856 |
b2962 |
yggX |
-12.92 |
0.004967 |
226 -- 272 |
1 -- 57 |
oxidative damage protective factor for iron-sulfur proteins |
|
_____________225________________________________________________________273\n_____________|__________________________________________________________|\n5'-UCA...UACUU___UGCA________C____________________G_______AG________CG__GAGCU...AGA-3'\n______________UCC____ACGUGAAG_AGAAGGUC__________AG_AUUUU_C__CUGUACCC__GC\n______________|||____||||||||_|:||||||__________|:_||:||_|__||||||||__:|\n______________AGG____UGCACUUC_UUUUCCAG__________UU_UAGAA_G__GACAUGGG__UG\n3'-AUU...GGUUU___CUAA________A________ACUUUCUAUC__G_____U_GA________A___-5'\n_____________|_________________________________________________________|\n_____________58________________________________________________________1\n |
262 -- 268 |
4 -- 10 |
-42.3698 kcal/mol |
16.7751 kcal/mol |
12.7026 kcal/mol |
225 273@LB@ | |@LB@5'-UCA...UACUU UGCA C G AG CG GAGCU...AGA-3'@LB@ UCC ACGUGAAG AGAAGGUC AG AUUUU C CUGUACCC GC@LB@ ||| |||||||| |:|||||| |: ||:|| | |||||||| :|@LB@ AGG UGCACUUC UUUUCCAG UU UAGAA G GACAUGGG UG@LB@3'-AUU...GGUUU CUAA A ACUUUCUAUC G U GA A -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -42.3698 kcal/mol@LB@Unfolding Energy - mRNA 16.7751 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 226 -- 272@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 4 -- 10@LB@ |
123 |
0.004171 |
0.1178 |
b2989 |
yghU |
-8.31 |
0.130595 |
46 -- 54 |
49 -- 57 |
putative S-transferase |
|
_____________45________55\n_____________|_________|\n5'-UUA...UGUGC_________CUGCU...CGC-3'\n______________UCUGAUUAC\n______________||:||||||\n______________AGGCUAAUG\n3'-AUU...GGUUU_________CACUU...AUG-5'\n_____________|_________|\n_____________58________48\n |
48 -- 54 |
49 -- 55 |
-9.38135 kcal/mol |
0.766517 kcal/mol |
0.318327 kcal/mol |
45 55@LB@ | |@LB@5'-UUA...UGUGC CUGCU...CGC-3'@LB@ UCUGAUUAC@LB@ ||:||||||@LB@ AGGCUAAUG@LB@3'-AUU...GGUUU CACUU...AUG-5'@LB@ | |@LB@ 58 48@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -9.38135 kcal/mol@LB@Unfolding Energy - mRNA 0.766517 kcal/mol@LB@Unfolding Energy - sRNA 0.318327 kcal/mol@LB@@LB@Position - mRNA 46 -- 54@LB@Position - sRNA 49 -- 57@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 49 -- 55@LB@ |
117 |
0.003878 |
0.1165 |
b3078 |
ygjI |
-10.25 |
0.038289 |
174 -- 181 |
1 -- 8 |
putative transporter |
b0899 |
_____________173______182\n_____________|________|\n5'-GGA...ACCGC________UCAUU...UUG-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
175 -- 181 |
1 -- 7 |
-12.7576 kcal/mol |
0.416118 kcal/mol |
2.11603 kcal/mol |
173 182@LB@ | |@LB@5'-GGA...ACCGC UCAUU...UUG-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -12.7576 kcal/mol@LB@Unfolding Energy - mRNA 0.416118 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 174 -- 181@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 1 -- 7@LB@ |
147 |
0.005606 |
0.1342 |
b3085 |
ygjP |
-7.80 |
0.173342 |
13 -- 33 |
55 -- 72 |
putative metal dependent hydrolase |
|
_____________12____________________34\n_____________|_____________________|\n5'-AAC...GCAGC_________UCC____CU___CACGC...AAC-3'\n______________AAAUAUUCA___GCCG__UCC\n______________|||||||||___|||:__|||\n______________UUUAUAAGU___CGGU__AGG\n3'-AUU...CCGAU________________UU___CUAAU...AUG-5'\n_____________|_____________________|\n_____________73____________________54\n |
14 -- 20 |
65 -- 71 |
-15.2572 kcal/mol |
1.39359 kcal/mol |
6.08601 kcal/mol |
12 34@LB@ | |@LB@5'-AAC...GCAGC UCC CU CACGC...AAC-3'@LB@ AAAUAUUCA GCCG UCC@LB@ ||||||||| |||: |||@LB@ UUUAUAAGU CGGU AGG@LB@3'-AUU...CCGAU UU CUAAU...AUG-5'@LB@ | |@LB@ 73 54@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -15.2572 kcal/mol@LB@Unfolding Energy - mRNA 1.39359 kcal/mol@LB@Unfolding Energy - sRNA 6.08601 kcal/mol@LB@@LB@Position - mRNA 13 -- 33@LB@Position - sRNA 55 -- 72@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 65 -- 71@LB@ |
170 |
0.007042 |
0.1457 |
b3110 |
yhaO |
-10.02 |
0.044877 |
174 -- 180 |
1 -- 7 |
putative transporter |
|
_____________173_____181\n_____________|_______|\n5'-AAU...AAUAA_______AAAAU...UCG-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
174 -- 180 |
1 -- 7 |
-12.6531 kcal/mol |
0.621925 kcal/mol |
2.03949 kcal/mol |
173 181@LB@ | |@LB@5'-AAU...AAUAA AAAAU...UCG-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.6531 kcal/mol@LB@Unfolding Energy - mRNA 0.621925 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 174 -- 180@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
145 |
0.005462 |
0.1325 |
b3239 |
yhcO |
-10.93 |
0.023720 |
179 -- 225 |
2 -- 55 |
putative barnase inhibitor |
|
_____________178______________________________________________________226\n_____________|________________________________________________________|\n5'-CUA...CGCCG___A_______C___________AAC______________A_______________AUGAG...GCG-3'\n______________CGA__ACGUGA_GGU____GG_C____AGAU_GAAUAUUU_UACCUUUG_AUUUUG\n______________|||__||||||_:||____||_|____||||_|||:||:|_|||||:||_|:::|:\n______________GCU__UGCACU_UCA____CC_G____UCUA_CUUGUAGA_AUGGAGAC_UGGGAU\n3'-AUU...UUUAG___AA__________UUUU__A_ACUU____U_________________A______G-5'\n_____________|________________________________________________________|\n_____________56_______________________________________________________1\n |
213 -- 219 |
9 -- 15 |
-30.2735 kcal/mol |
6.67064 kcal/mol |
12.6986 kcal/mol |
178 226@LB@ | |@LB@5'-CUA...CGCCG A C AAC A AUGAG...GCG-3'@LB@ CGA ACGUGA GGU GG C AGAU GAAUAUUU UACCUUUG AUUUUG@LB@ ||| |||||| :|| || | |||| |||:||:| |||||:|| |:::|:@LB@ GCU UGCACU UCA CC G UCUA CUUGUAGA AUGGAGAC UGGGAU@LB@3'-AUU...UUUAG AA UUUU A ACUU U A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -30.2735 kcal/mol@LB@Unfolding Energy - mRNA 6.67064 kcal/mol@LB@Unfolding Energy - sRNA 12.6986 kcal/mol@LB@@LB@Position - mRNA 179 -- 225@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 9 -- 15@LB@ |
55 |
0.0008105 |
0.05184 |
b3262 |
yhdJ |
-10.49 |
0.032282 |
53 -- 83 |
1 -- 34 |
DNA adenine methyltransferase SAM-dependent |
|
_____________52_________________________________84\n_____________|__________________________________|\n5'-CCU...CUGCG____U____________A____GUG____G____GUAAA...GUG-3'\n______________CUGA__GAU_GGGCAUC__ACC___GUAC_CUGC\n______________||||__|||_|::||||__|||___||||_||:|\n______________GACU__CUA_CUUGUAG__UGG___CAUG_GAUG\n3'-AUU...UUCCA____UU___U_______AA___AGA____G____-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
61 -- 67 |
18 -- 24 |
-29.8286 kcal/mol |
10.2122 kcal/mol |
9.14469 kcal/mol |
52 84@LB@ | |@LB@5'-CCU...CUGCG U A GUG G GUAAA...GUG-3'@LB@ CUGA GAU GGGCAUC ACC GUAC CUGC@LB@ |||| ||| |::|||| ||| |||| ||:|@LB@ GACU CUA CUUGUAG UGG CAUG GAUG@LB@3'-AUU...UUCCA UU U AA AGA G -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -29.8286 kcal/mol@LB@Unfolding Energy - mRNA 10.2122 kcal/mol@LB@Unfolding Energy - sRNA 9.14469 kcal/mol@LB@@LB@Position - mRNA 53 -- 83@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 18 -- 24@LB@ |
64 |
0.001083 |
0.05856 |
b3471 |
yhhQ |
-11.41 |
0.016564 |
49 -- 60 |
44 -- 55 |
DUF165 family inner membrane protein |
|
_____________48___________61\n_____________|____________|\n5'-AAA...GUUAA____________AAUUA...UUC-3'\n______________CGAUUGCGUGAA\n______________|||||:||||||\n______________GCUAAUGCACUU\n3'-AUU...UUUAG____________CAUUU...AUG-5'\n_____________|____________|\n_____________56___________43\n |
54 -- 60 |
44 -- 50 |
-16.5289 kcal/mol |
2.50651 kcal/mol |
2.62518 kcal/mol |
48 61@LB@ | |@LB@5'-AAA...GUUAA AAUUA...UUC-3'@LB@ CGAUUGCGUGAA@LB@ |||||:||||||@LB@ GCUAAUGCACUU@LB@3'-AUU...UUUAG CAUUU...AUG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -16.5289 kcal/mol@LB@Unfolding Energy - mRNA 2.50651 kcal/mol@LB@Unfolding Energy - sRNA 2.62518 kcal/mol@LB@@LB@Position - mRNA 49 -- 60@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 44 -- 50@LB@ |
141 |
0.00519 |
0.1284 |
b3550 |
yiaC |
-7.29 |
0.227336 |
55 -- 76 |
1 -- 22 |
GNAT family putative N-acetyltransferase |
|
_____________54______________________77\n_____________|_______________________|\n5'-AAU...CAUCU_____C______CGAC_______CUAAG...GGC-3'\n______________ACGUC__GCCUC____GCCCUAU\n______________||:||__:||||____:|||||:\n______________UGUAG__UGGAG____UGGGAUG\n3'-AUU...UAUCU_____AA_____ACA________-5'\n_____________|______________________|\n_____________23_____________________1\n |
70 -- 76 |
1 -- 7 |
-20.6815 kcal/mol |
5.4259 kcal/mol |
7.99236 kcal/mol |
54 77@LB@ | |@LB@5'-AAU...CAUCU C CGAC CUAAG...GGC-3'@LB@ ACGUC GCCUC GCCCUAU@LB@ ||:|| :|||| :|||||:@LB@ UGUAG UGGAG UGGGAUG@LB@3'-AUU...UAUCU AA ACA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -20.6815 kcal/mol@LB@Unfolding Energy - mRNA 5.4259 kcal/mol@LB@Unfolding Energy - sRNA 7.99236 kcal/mol@LB@@LB@Position - mRNA 55 -- 76@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 1 -- 7@LB@ |
158 |
0.00634 |
0.1412 |
b3598 |
yibI |
-10.19 |
0.039756 |
289 -- 298 |
49 -- 58 |
DUF3302 family inner membrane protein |
b3587 |
_____________288________299\n_____________|__________|\n5'-CGU...CCCUU__________CA-3'\n______________AUCUGAUUGC\n______________|||:||||:|\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
292 -- 298 |
49 -- 55 |
-10.9433 kcal/mol |
0.440755 kcal/mol |
0.318367 kcal/mol |
288 299@LB@ | |@LB@5'-CGU...CCCUU CA-3'@LB@ AUCUGAUUGC@LB@ |||:||||:|@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -10.9433 kcal/mol@LB@Unfolding Energy - mRNA 0.440755 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
17 |
5.719e-05 |
0.01183 |
b3675 |
yidG |
-12.05 |
0.010096 |
82 -- 130 |
1 -- 56 |
inner membrane protein |
|
_____________81_____________________________________________________________131\n_____________|______________________________________________________________|\n5'-CGC...UUGCG_________CAAU_A_____CGAUGC__________GG________________________ACCAA...CGU-3'\n______________CUGGUUACG____G_AAAAG______GUCUGAAAGA___________ACCU____GCCCUAC\n______________|:|:|||||____|_|||||______||||||||||___________||||____:||||||\n______________GGCUAAUGC____C_UUUUC______CAGACUUUCU___________UGGA____UGGGAUG\n3'-AUU...GUUUA_________ACUU_A_____________________AUCUUGUAGAA____GACA_______-5'\n_____________|_____________________________________________________________|\n_____________57____________________________________________________________1\n |
124 -- 130 |
1 -- 7 |
-38.348 kcal/mol |
13.6157 kcal/mol |
12.7022 kcal/mol |
81 131@LB@ | |@LB@5'-CGC...UUGCG CAAU A CGAUGC GG ACCAA...CGU-3'@LB@ CUGGUUACG G AAAAG GUCUGAAAGA ACCU GCCCUAC@LB@ |:|:||||| | ||||| |||||||||| |||| :||||||@LB@ GGCUAAUGC C UUUUC CAGACUUUCU UGGA UGGGAUG@LB@3'-AUU...GUUUA ACUU A AUCUUGUAGAA GACA -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -38.348 kcal/mol@LB@Unfolding Energy - mRNA 13.6157 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 82 -- 130@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 1 -- 7@LB@ |
41 |
0.000458 |
0.03766 |
b3679 |
yidK |
-16.91 |
0.000078 |
119 -- 159 |
1 -- 60 |
putative transporter |
|
_____________118__________________________________________________________160\n_____________|____________________________________________________________|\n5'-UUU...UUUAA________C_____________________CCCGAC________________________AUUCA...AAG-3'\n______________GAAUCUGA_UGC______________CUGA________GCAUUUUACCUCU___CCCUAU\n______________:||||:||_|:|______________||||________:|||:||||||||___|||||:\n______________UUUAGGCU_AUG______________GACU________UGUAGAAUGGAGA___GGGAUG\n3'-AUU...GUCGG________A___CACUUCAUUUUCCA____UUCUAUCU_____________CAU______-5'\n_____________|___________________________________________________________|\n_____________61__________________________________________________________1\n |
147 -- 153 |
10 -- 16 |
-34.139 kcal/mol |
4.55251 kcal/mol |
12.7042 kcal/mol |
118 160@LB@ | |@LB@5'-UUU...UUUAA C CCCGAC AUUCA...AAG-3'@LB@ GAAUCUGA UGC CUGA GCAUUUUACCUCU CCCUAU@LB@ :||||:|| |:| |||| :|||:|||||||| |||||:@LB@ UUUAGGCU AUG GACU UGUAGAAUGGAGA GGGAUG@LB@3'-AUU...GUCGG A CACUUCAUUUUCCA UUCUAUCU CAU -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -16.91 kcal/mol@LB@Hybridization Energy -34.139 kcal/mol@LB@Unfolding Energy - mRNA 4.55251 kcal/mol@LB@Unfolding Energy - sRNA 12.7042 kcal/mol@LB@@LB@Position - mRNA 119 -- 159@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 10 -- 16@LB@ |
50 |
0.0006038 |
0.04249 |
b3755 |
yieP |
-5.20 |
0.556147 |
189 -- 196 |
25 -- 32 |
putative transcriptional regulator |
|
_____________188______197\n_____________|________|\n5'-UUC...AAAAA________AGUAA...CCG-3'\n______________GGAAGAUA\n______________|:||||||\n______________CUUUCUAU\n3'-AUU...CCAGA________CUUGU...AUG-5'\n_____________|________|\n_____________33_______24\n |
190 -- 196 |
25 -- 31 |
-8.32385 kcal/mol |
1.19727 kcal/mol |
1.85262 kcal/mol |
188 197@LB@ | |@LB@5'-UUC...AAAAA AGUAA...CCG-3'@LB@ GGAAGAUA@LB@ |:||||||@LB@ CUUUCUAU@LB@3'-AUU...CCAGA CUUGU...AUG-5'@LB@ | |@LB@ 33 24@LB@@LB@@LB@Energy -5.20 kcal/mol@LB@Hybridization Energy -8.32385 kcal/mol@LB@Unfolding Energy - mRNA 1.19727 kcal/mol@LB@Unfolding Energy - sRNA 1.85262 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 25 -- 32@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |
118 |
0.003907 |
0.1165 |
b3827 |
yigM |
-8.32 |
0.129405 |
260 -- 268 |
1 -- 9 |
putative inner membrane EamA-like transporter |
|
_____________259_______269\n_____________|_________|\n5'-GGA...GGCGA_________GGGGC...UGG-3'\n______________GUACCUUGC\n______________|||||:|:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
262 -- 268 |
1 -- 7 |
-12.9582 kcal/mol |
2.53078 kcal/mol |
2.12872 kcal/mol |
259 269@LB@ | |@LB@5'-GGA...GGCGA GGGGC...UGG-3'@LB@ GUACCUUGC@LB@ |||||:|:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -12.9582 kcal/mol@LB@Unfolding Energy - mRNA 2.53078 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 260 -- 268@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 1 -- 7@LB@ |
112 |
0.003594 |
0.1129 |
b3866 |
yihI |
-3.87 |
0.795256 |
171 -- 194 |
53 -- 75 |
activator of Der GTPase |
|
_____________170______________________195\n_____________|________________________|\n5'-GAA...CUAUA_____UAAAA________AGA___ACCAU...GUC-3'\n______________CUGAA_____CGGCUAAA___CGA\n______________||:||_____|:||:|||___|||\n______________GAUUU_____GUCGGUUU___GCU\n3'-AUU...CCGCC_____UAUAA________AG____AAUGC...AUG-5'\n_____________|________________________|\n_____________76_______________________52\n |
181 -- 187 |
59 -- 65 |
-14.4152 kcal/mol |
4.20142 kcal/mol |
6.36326 kcal/mol |
170 195@LB@ | |@LB@5'-GAA...CUAUA UAAAA AGA ACCAU...GUC-3'@LB@ CUGAA CGGCUAAA CGA@LB@ ||:|| |:||:||| |||@LB@ GAUUU GUCGGUUU GCU@LB@3'-AUU...CCGCC UAUAA AG AAUGC...AUG-5'@LB@ | |@LB@ 76 52@LB@@LB@@LB@Energy -3.87 kcal/mol@LB@Hybridization Energy -14.4152 kcal/mol@LB@Unfolding Energy - mRNA 4.20142 kcal/mol@LB@Unfolding Energy - sRNA 6.36326 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 53 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 59 -- 65@LB@ |
88 |
0.002339 |
0.09349 |
b3878 |
yihQ |
-11.00 |
0.022508 |
260 -- 267 |
1 -- 8 |
putative sulpholipid alpha-glucosidase; alpha-glucosyl fluoride glucosidase |
b3656 |
_____________259______268\n_____________|________|\n5'-AAC...AGUUU________AUUUU...GCA-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
261 -- 267 |
1 -- 7 |
-13.427 kcal/mol |
0.33456 kcal/mol |
2.11603 kcal/mol |
259 268@LB@ | |@LB@5'-AAC...AGUUU AUUUU...GCA-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -13.427 kcal/mol@LB@Unfolding Energy - mRNA 0.33456 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 260 -- 267@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 1 -- 7@LB@ |
52 |
0.0006736 |
0.04557 |
b3964 |
yijD |
-9.23 |
0.074829 |
177 -- 192 |
43 -- 57 |
DUF1422 family inner membrane protein |
|
_____________176______________193\n_____________|________________|\n5'-ACU...AUUAU_____GAA________GACGA...UGC-3'\n______________UCCGG___AUGUGAAG\n______________||||:___|:||||||\n______________AGGCU___UGCACUUC\n3'-AUU...GGUUU_____AA_________AUUUU...AUG-5'\n_____________|________________|\n_____________58_______________42\n |
186 -- 192 |
43 -- 49 |
-16.7307 kcal/mol |
4.24116 kcal/mol |
3.27382 kcal/mol |
176 193@LB@ | |@LB@5'-ACU...AUUAU GAA GACGA...UGC-3'@LB@ UCCGG AUGUGAAG@LB@ ||||: |:||||||@LB@ AGGCU UGCACUUC@LB@3'-AUU...GGUUU AA AUUUU...AUG-5'@LB@ | |@LB@ 58 42@LB@@LB@@LB@Energy -9.23 kcal/mol@LB@Hybridization Energy -16.7307 kcal/mol@LB@Unfolding Energy - mRNA 4.24116 kcal/mol@LB@Unfolding Energy - sRNA 3.27382 kcal/mol@LB@@LB@Position - mRNA 177 -- 192@LB@Position - sRNA 43 -- 57@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 43 -- 49@LB@ |
178 |
0.007695 |
0.1511 |
b4567 |
yjjZ |
-7.25 |
0.231371 |
185 -- 218 |
2 -- 33 |
uncharacterized protein |
|
_____________184_________________________________219\n_____________|___________________________________|\n5'-CGG...AUCAA_______GAU___AU___G____AA______G___GGCAG...GGA-3'\n______________UGAAAGA___GAA__CAU_UUGC__C_GUAC_CUG\n______________|||||||___|||__|||_||:|__|_||||_||:\n______________ACUUUCU___CUU__GUA_AAUG__G_CAUG_GAU\n3'-AUU...UCCAG_______AU_________G____GA_A____G___G-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
185 -- 191 |
27 -- 33 |
-22.8177 kcal/mol |
6.54395 kcal/mol |
9.04499 kcal/mol |
184 219@LB@ | |@LB@5'-CGG...AUCAA GAU AU G AA G GGCAG...GGA-3'@LB@ UGAAAGA GAA CAU UUGC C GUAC CUG@LB@ ||||||| ||| ||| ||:| | |||| ||:@LB@ ACUUUCU CUU GUA AAUG G CAUG GAU@LB@3'-AUU...UCCAG AU G GA A G G-5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -7.25 kcal/mol@LB@Hybridization Energy -22.8177 kcal/mol@LB@Unfolding Energy - mRNA 6.54395 kcal/mol@LB@Unfolding Energy - sRNA 9.04499 kcal/mol@LB@@LB@Position - mRNA 185 -- 218@LB@Position - sRNA 2 -- 33@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 27 -- 33@LB@ |
103 |
0.003241 |
0.1101 |
b0837 |
yliI |
-8.40 |
0.123505 |
223 -- 230 |
4 -- 11 |
soluble aldose sugar dehydrogenase |
|
_____________222______231\n_____________|________|\n5'-GUC...UUUCC________CUUAU...AAC-3'\n______________UUGUGCCC\n______________:|||:|||\n______________GACAUGGG\n3'-AUU...AUGGA________AUG-5'\n_____________|________|\n_____________12_______3\n |
224 -- 230 |
4 -- 10 |
-12.324 kcal/mol |
0.491988 kcal/mol |
3.45361 kcal/mol |
222 231@LB@ | |@LB@5'-GUC...UUUCC CUUAU...AAC-3'@LB@ UUGUGCCC@LB@ :|||:|||@LB@ GACAUGGG@LB@3'-AUU...AUGGA AUG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -12.324 kcal/mol@LB@Unfolding Energy - mRNA 0.491988 kcal/mol@LB@Unfolding Energy - sRNA 3.45361 kcal/mol@LB@@LB@Position - mRNA 223 -- 230@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 4 -- 10@LB@ |
168 |
0.006917 |
0.1448 |
b3070 |
yqjH |
-8.25 |
0.134865 |
172 -- 181 |
49 -- 58 |
putative siderophore interacting protein |
|
_____________171________182\n_____________|__________|\n5'-ACU...GAUAU__________CAUCA...AGC-3'\n______________AUCUGAUUAC\n______________|||:||||||\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
175 -- 181 |
49 -- 55 |
-10.8722 kcal/mol |
2.31397 kcal/mol |
0.318367 kcal/mol |
171 182@LB@ | |@LB@5'-ACU...GAUAU CAUCA...AGC-3'@LB@ AUCUGAUUAC@LB@ |||:||||||@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -10.8722 kcal/mol@LB@Unfolding Energy - mRNA 2.31397 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |