105 |
0.003348 |
0.1101 |
b2218 |
rcsC |
-11.03 |
0.021992 |
174 -- 214 |
1 -- 37 |
hybrid sensory kinase in two-component regulatory system with RcsB and YojN |
|
_____________173_______________________________________215\n_____________|_________________________________________|\n5'-AGC...CCAUC____ACCU____C_____U__GCC______AAA________UUCUU...CCG-3'\n______________GGUC____GAGG_GGAGC_UC___CCUUUG___UACCUUGC\n______________||||____:||:_:||:|_||___|||:||___||||:|:|\n______________CCAG____UUCU_UCUUG_AG___GGAGAC___AUGGGAUG\n3'-AUU...AUUUU____ACU_____A_____U__AAU_________________-5'\n_____________|________________________________________|\n_____________38_______________________________________1\n |
208 -- 214 |
1 -- 7 |
-33.3544 kcal/mol |
10.9963 kcal/mol |
11.3499 kcal/mol |
173 215@LB@ | |@LB@5'-AGC...CCAUC ACCU C U GCC AAA UUCUU...CCG-3'@LB@ GGUC GAGG GGAGC UC CCUUUG UACCUUGC@LB@ |||| :||: :||:| || |||:|| ||||:|:|@LB@ CCAG UUCU UCUUG AG GGAGAC AUGGGAUG@LB@3'-AUU...AUUUU ACU A U AAU -5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -33.3544 kcal/mol@LB@Unfolding Energy - mRNA 10.9963 kcal/mol@LB@Unfolding Energy - sRNA 11.3499 kcal/mol@LB@@LB@Position - mRNA 174 -- 214@LB@Position - sRNA 1 -- 37@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 1 -- 7@LB@ |
149 |
0.005967 |
0.1406 |
b0472 |
recR |
-13.66 |
0.002580 |
134 -- 160 |
3 -- 29 |
gap repair protein |
|
_____________133_________________________161\n_____________|___________________________|\n5'-GUG...AACGC___A____AAAAUG_____________CCGGA...UUC-3'\n______________AGA_AGAA______GCCUCUGUAUCCU\n______________|||_||||______:||||||||:|||\n______________UCU_UCUU______UGGAGACAUGGGA\n3'-AUU...GACUU___A____GUAGAA_____________UG-5'\n_____________|___________________________|\n_____________30__________________________2\n |
154 -- 160 |
3 -- 9 |
-27.6106 kcal/mol |
5.92472 kcal/mol |
8.05021 kcal/mol |
133 161@LB@ | |@LB@5'-GUG...AACGC A AAAAUG CCGGA...UUC-3'@LB@ AGA AGAA GCCUCUGUAUCCU@LB@ ||| |||| :||||||||:|||@LB@ UCU UCUU UGGAGACAUGGGA@LB@3'-AUU...GACUU A GUAGAA UG-5'@LB@ | |@LB@ 30 2@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -27.6106 kcal/mol@LB@Unfolding Energy - mRNA 5.92472 kcal/mol@LB@Unfolding Energy - sRNA 8.05021 kcal/mol@LB@@LB@Position - mRNA 134 -- 160@LB@Position - sRNA 3 -- 29@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 3 -- 9@LB@ |
30 |
0.0002612 |
0.03063 |
b3789 |
rffH |
-9.15 |
0.078548 |
244 -- 254 |
48 -- 58 |
glucose-1-phosphate thymidylyltransferase |
|
_____________243_________255\n_____________|___________|\n5'-GGC...AUUGC___________CGCGG...UGA-3'\n______________AUCCGAUUACG\n______________|||||||||||\n______________UAGGCUAAUGC\n3'-AUU...CGGUU___________ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
248 -- 254 |
48 -- 54 |
-15.7126 kcal/mol |
4.98099 kcal/mol |
1.55987 kcal/mol |
243 255@LB@ | |@LB@5'-GGC...AUUGC CGCGG...UGA-3'@LB@ AUCCGAUUACG@LB@ |||||||||||@LB@ UAGGCUAAUGC@LB@3'-AUU...CGGUU ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.7126 kcal/mol@LB@Unfolding Energy - mRNA 4.98099 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 244 -- 254@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
101 |
0.00315 |
0.1097 |
b1822 |
rlmA |
-7.85 |
0.169074 |
182 -- 190 |
1 -- 9 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________181_______191\n_____________|_________|\n5'-AAG...CUUUA_________CGGAG...GGU-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
184 -- 190 |
1 -- 7 |
-13.1594 kcal/mol |
3.20778 kcal/mol |
2.12872 kcal/mol |
181 191@LB@ | |@LB@5'-AAG...CUUUA CGGAG...GGU-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -13.1594 kcal/mol@LB@Unfolding Energy - mRNA 3.20778 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 182 -- 190@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
144 |
0.005273 |
0.1288 |
b1652 |
rnt |
-8.26 |
0.134019 |
203 -- 213 |
48 -- 58 |
RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
|
_____________202_________214\n_____________|___________|\n5'-AAG...CAGAU_______A___CUCAA...CCG-3'\n______________GUCCGAU_ACG\n______________:||||||_|||\n______________UAGGCUA_UGC\n3'-AUU...CGGUU_______A___ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
203 -- 209 |
52 -- 58 |
-12.2442 kcal/mol |
2.4043 kcal/mol |
1.55987 kcal/mol |
202 214@LB@ | |@LB@5'-AAG...CAGAU A CUCAA...CCG-3'@LB@ GUCCGAU ACG@LB@ :|||||| |||@LB@ UAGGCUA UGC@LB@3'-AUU...CGGUU A ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -12.2442 kcal/mol@LB@Unfolding Energy - mRNA 2.4043 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 203 -- 213@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 52 -- 58@LB@ |
195 |
0.008707 |
0.1558 |
b3318 |
rplW |
-7.58 |
0.194751 |
202 -- 213 |
43 -- 55 |
50S ribosomal subunit protein L23 |
|
_____________201___________214\n_____________|_____________|\n5'-GCA...UGGCA_____________AACGU...AAG-3'\n______________UGAUU_CGUGAAG\n______________:||||_|||||||\n______________GCUAA_GCACUUC\n3'-AUU...UUUAG_____U_______AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
207 -- 213 |
43 -- 49 |
-13.4464 kcal/mol |
2.60751 kcal/mol |
3.2693 kcal/mol |
201 214@LB@ | |@LB@5'-GCA...UGGCA AACGU...AAG-3'@LB@ UGAUU CGUGAAG@LB@ :|||| |||||||@LB@ GCUAA GCACUUC@LB@3'-AUU...UUUAG U AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -13.4464 kcal/mol@LB@Unfolding Energy - mRNA 2.60751 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 43 -- 49@LB@ |
42 |
0.0004615 |
0.03766 |
b3341 |
rpsG |
-11.13 |
0.020425 |
227 -- 249 |
53 -- 76 |
30S ribosomal subunit protein S7 |
|
_____________226______________________250\n_____________|________________________|\n5'-CGG...GGUCA__GU________U___________AGUUC...AUG-3'\n______________GC__AAA_AUUC_GCCGGAUCCGA\n______________||__|||_||||_|||::||||||\n______________CG__UUU_UAAG_CGGUUUAGGCU\n3'-AUU...CCCGC__AU___A____U___________AAUGC...AUG-5'\n_____________|________________________|\n_____________77_______________________52\n |
243 -- 249 |
53 -- 59 |
-23.8099 kcal/mol |
6.33566 kcal/mol |
6.36489 kcal/mol |
226 250@LB@ | |@LB@5'-CGG...GGUCA GU U AGUUC...AUG-3'@LB@ GC AAA AUUC GCCGGAUCCGA@LB@ || ||| |||| |||::||||||@LB@ CG UUU UAAG CGGUUUAGGCU@LB@3'-AUU...CCCGC AU A U AAUGC...AUG-5'@LB@ | |@LB@ 77 52@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -23.8099 kcal/mol@LB@Unfolding Energy - mRNA 6.33566 kcal/mol@LB@Unfolding Energy - sRNA 6.36489 kcal/mol@LB@@LB@Position - mRNA 227 -- 249@LB@Position - sRNA 53 -- 76@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 53 -- 59@LB@ |
81 |
0.001761 |
0.07647 |
b3311 |
rpsQ |
-9.62 |
0.058411 |
217 -- 225 |
1 -- 9 |
30S ribosomal subunit protein S17 |
|
_____________216_______226\n_____________|_________|\n5'-GGU...AAUCC_________AAGGU...UCU-3'\n______________GUACUCUGC\n______________||||:||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
219 -- 225 |
1 -- 7 |
-13.7932 kcal/mol |
2.07071 kcal/mol |
2.12872 kcal/mol |
216 226@LB@ | |@LB@5'-GGU...AAUCC AAGGU...UCU-3'@LB@ GUACUCUGC@LB@ ||||:||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -13.7932 kcal/mol@LB@Unfolding Energy - mRNA 2.07071 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 217 -- 225@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 1 -- 7@LB@ |
184 |
0.00812 |
0.1553 |
b4371 |
rsmC |
-7.50 |
0.203534 |
191 -- 216 |
4 -- 25 |
16S rRNA m(2)G1207 methyltransferase SAM-dependent |
|
_____________190________________________217\n_____________|__________________________|\n5'-AUC...AUUGA________CC__G____CAUU_____CGGCA...UGC-3'\n______________GGAGCAUU__AU_UCUG____UACCC\n______________:||:|||:__|:_||||____|||||\n______________UCUUGUAG__UG_AGAC____AUGGG\n3'-AUU...UUCUA________AA__G_____________AUG-5'\n_____________|__________________________|\n_____________26_________________________3\n |
192 -- 198 |
18 -- 24 |
-20.5319 kcal/mol |
5.03265 kcal/mol |
8.0209 kcal/mol |
190 217@LB@ | |@LB@5'-AUC...AUUGA CC G CAUU CGGCA...UGC-3'@LB@ GGAGCAUU AU UCUG UACCC@LB@ :||:|||: |: |||| |||||@LB@ UCUUGUAG UG AGAC AUGGG@LB@3'-AUU...UUCUA AA G AUG-5'@LB@ | |@LB@ 26 3@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -20.5319 kcal/mol@LB@Unfolding Energy - mRNA 5.03265 kcal/mol@LB@Unfolding Energy - sRNA 8.0209 kcal/mol@LB@@LB@Position - mRNA 191 -- 216@LB@Position - sRNA 4 -- 25@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 18 -- 24@LB@ |
76 |
0.001511 |
0.06993 |
b3465 |
rsmD |
-10.43 |
0.033857 |
227 -- 244 |
49 -- 65 |
16S rRNA m(2)G966 methyltransferase SAM-dependent |
|
_____________226________________245\n_____________|__________________|\n5'-UUG...GGCAG____________C_____UGGCG...GCC-3'\n______________CGGCCAAAUCCG_AUUAU\n______________|:||||||||||_||||:\n______________GUCGGUUUAGGC_UAAUG\n3'-AUU...UAUAA__________________CACUU...AUG-5'\n_____________|__________________|\n_____________66_________________48\n |
232 -- 238 |
54 -- 60 |
-22.129 kcal/mol |
5.5281 kcal/mol |
6.19707 kcal/mol |
226 245@LB@ | |@LB@5'-UUG...GGCAG C UGGCG...GCC-3'@LB@ CGGCCAAAUCCG AUUAU@LB@ |:|||||||||| ||||:@LB@ GUCGGUUUAGGC UAAUG@LB@3'-AUU...UAUAA CACUU...AUG-5'@LB@ | |@LB@ 66 48@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -22.129 kcal/mol@LB@Unfolding Energy - mRNA 5.5281 kcal/mol@LB@Unfolding Energy - sRNA 6.19707 kcal/mol@LB@@LB@Position - mRNA 227 -- 244@LB@Position - sRNA 49 -- 65@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 54 -- 60@LB@ |