67 |
0.001147 |
0.05856 |
b2319 |
usg |
-10.96 |
0.023185 |
203 -- 221 |
18 -- 36 |
putative semialdehyde dehydrogenase |
|
_____________202_________________222\n_____________|___________________|\n5'-GAG...ACCAU_________C_________GCCGU...AAA-3'\n______________GUCUGAAGG_UGGAACAUU\n______________|||||||:|_|:||||||:\n______________CAGACUUUC_AUCUUGUAG\n3'-AUU...UUUUC_________U_________AAUGG...AUG-5'\n_____________|___________________|\n_____________37__________________17\n |
215 -- 221 |
18 -- 24 |
-22.956 kcal/mol |
5.32254 kcal/mol |
6.60045 kcal/mol |
202 222@LB@ | |@LB@5'-GAG...ACCAU C GCCGU...AAA-3'@LB@ GUCUGAAGG UGGAACAUU@LB@ |||||||:| |:||||||:@LB@ CAGACUUUC AUCUUGUAG@LB@3'-AUU...UUUUC U AAUGG...AUG-5'@LB@ | |@LB@ 37 17@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -22.956 kcal/mol@LB@Unfolding Energy - mRNA 5.32254 kcal/mol@LB@Unfolding Energy - sRNA 6.60045 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 18 -- 36@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 18 -- 24@LB@ |
38 |
0.0004278 |
0.03766 |
b3092 |
uxaC |
-12.53 |
0.006845 |
206 -- 269 |
1 -- 57 |
uronate isomerase |
|
_____________205_________________________________________________________________270\n_____________|___________________________________________________________________|\n5'-UUG...AUGAC____U_____AC_____AUUUC______UU_____CC____UUGCCC___G________ACGA____GCAAA...AUU-3'\n______________UCCG_UUAUG__UGAAG________CUG__AGAUA__GAAU______GCC_UCUGUAUC____CUAC\n______________||||_|||:|__|||||________|||__|||||__|||:______:||_||||||:|____||||\n______________AGGC_AAUGC__ACUUC________GAC__UCUAU__CUUG______UGG_AGACAUGG____GAUG\n3'-AUU...GGUUU____U____________AUUUUCCA___UU___________UAGAA_____________________-5'\n_____________|__________________________________________________________________|\n_____________58_________________________________________________________________1\n |
255 -- 261 |
5 -- 11 |
-36.5836 kcal/mol |
11.3711 kcal/mol |
12.7026 kcal/mol |
205 270@LB@ | |@LB@5'-UUG...AUGAC U AC AUUUC UU CC UUGCCC G ACGA GCAAA...AUU-3'@LB@ UCCG UUAUG UGAAG CUG AGAUA GAAU GCC UCUGUAUC CUAC@LB@ |||| |||:| ||||| ||| ||||| |||: :|| ||||||:| ||||@LB@ AGGC AAUGC ACUUC GAC UCUAU CUUG UGG AGACAUGG GAUG@LB@3'-AUU...GGUUU U AUUUUCCA UU UAGAA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -36.5836 kcal/mol@LB@Unfolding Energy - mRNA 11.3711 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 206 -- 269@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 5 -- 11@LB@ |
138 |
0.004994 |
0.127 |
b3633 |
waaA |
-9.37 |
0.068643 |
230 -- 259 |
48 -- 75 |
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) |
|
_____________229____________________________260\n_____________|______________________________|\n5'-UCG...CUUCU___CCU__________CU_______A____GCUCU...AAC-3'\n______________CUA___UAUUCAGCCG__GAUCUGG_UACG\n______________|||___|||||||||:__:|||:|:_||||\n______________GAU___AUAAGUCGGU__UUAGGCU_AUGC\n3'-AUU...CCGCC___UUU___________________A____ACUUC...AUG-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
248 -- 254 |
53 -- 59 |
-25.3567 kcal/mol |
8.33931 kcal/mol |
7.67232 kcal/mol |
229 260@LB@ | |@LB@5'-UCG...CUUCU CCU CU A GCUCU...AAC-3'@LB@ CUA UAUUCAGCCG GAUCUGG UACG@LB@ ||| |||||||||: :|||:|: ||||@LB@ GAU AUAAGUCGGU UUAGGCU AUGC@LB@3'-AUU...CCGCC UUU A ACUUC...AUG-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -25.3567 kcal/mol@LB@Unfolding Energy - mRNA 8.33931 kcal/mol@LB@Unfolding Energy - sRNA 7.67232 kcal/mol@LB@@LB@Position - mRNA 230 -- 259@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 53 -- 59@LB@ |
44 |
0.000471 |
0.03766 |
b3624 |
waaZ |
-7.10 |
0.250129 |
289 -- 295 |
1 -- 7 |
lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein |
|
_____________288_____296\n_____________|_______|\n5'-AGA...UUCGG_______AUCGC-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
289 -- 295 |
1 -- 7 |
-11.6335 kcal/mol |
2.52016 kcal/mol |
2.03949 kcal/mol |
288 296@LB@ | |@LB@5'-AGA...UUCGG AUCGC-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -11.6335 kcal/mol@LB@Unfolding Energy - mRNA 2.52016 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 289 -- 295@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 1 -- 7@LB@ |
116 |
0.003844 |
0.1165 |
b1004 |
wrbA |
-12.42 |
0.007537 |
123 -- 145 |
10 -- 35 |
NAD(P)H:quinone oxidoreductase |
|
_____________122________________________146\n_____________|__________________________|\n5'-UUA...UGCAC__________________________AAAUA...AAG-3'\n______________UCUGAAA___AGGACGUCUUAUCUUU\n______________|||||||___||:||:|||||:||:|\n______________AGACUUU___UCUUGUAGAAUGGAGA\n3'-AUU...UUUCC_______CUA________________CAUGG...AUG-5'\n_____________|__________________________|\n_____________36_________________________9\n |
133 -- 139 |
16 -- 22 |
-25.4666 kcal/mol |
4.32254 kcal/mol |
8.70229 kcal/mol |
122 146@LB@ | |@LB@5'-UUA...UGCAC AAAUA...AAG-3'@LB@ UCUGAAA AGGACGUCUUAUCUUU@LB@ ||||||| ||:||:|||||:||:|@LB@ AGACUUU UCUUGUAGAAUGGAGA@LB@3'-AUU...UUUCC CUA CAUGG...AUG-5'@LB@ | |@LB@ 36 9@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -25.4666 kcal/mol@LB@Unfolding Energy - mRNA 4.32254 kcal/mol@LB@Unfolding Energy - sRNA 8.70229 kcal/mol@LB@@LB@Position - mRNA 123 -- 145@LB@Position - sRNA 10 -- 35@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 16 -- 22@LB@ |
22 |
0.0001652 |
0.02641 |
b3566 |
xylF |
-9.94 |
0.047349 |
202 -- 240 |
1 -- 33 |
D-xylose transporter subunit |
|
_____________201_____________________________________241\n_____________|_______________________________________|\n5'-CGA...CACCA_____AUAA________C__CUCAC______C____C__UCCUG...AUG-3'\n______________UGAAA____AGAACAUU_UA_____CCUUUG_ACCU_AC\n______________|||||____|||||||:_||_____|||:||_|||:_||\n______________ACUUU____UCUUGUAG_AU_____GGAGAC_UGGG_UG\n3'-AUU...UCCAG_____CUA_________A_____________A____A__-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
212 -- 218 |
18 -- 24 |
-22.447 kcal/mol |
3.48977 kcal/mol |
9.04529 kcal/mol |
201 241@LB@ | |@LB@5'-CGA...CACCA AUAA C CUCAC C C UCCUG...AUG-3'@LB@ UGAAA AGAACAUU UA CCUUUG ACCU AC@LB@ ||||| |||||||: || |||:|| |||: ||@LB@ ACUUU UCUUGUAG AU GGAGAC UGGG UG@LB@3'-AUU...UCCAG CUA A A A -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -22.447 kcal/mol@LB@Unfolding Energy - mRNA 3.48977 kcal/mol@LB@Unfolding Energy - sRNA 9.04529 kcal/mol@LB@@LB@Position - mRNA 202 -- 240@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 18 -- 24@LB@ |
194 |
0.008663 |
0.1558 |
b0213 |
yafS |
-5.39 |
0.521143 |
17 -- 34 |
51 -- 73 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________16______________________35\n_____________|_______________________|\n5'-UGG...GGUGA_______________________GCCAG...UCA-3'\n______________GAAAUAU__GGCC___UCCGGUU\n______________:||||||__:|||___||||:||\n______________UUUUAUA__UCGG___AGGCUAA\n3'-AUU...GCCGA_______AG____UUU_______UGCAC...AUG-5'\n_____________|_______________________|\n_____________74______________________50\n |
28 -- 34 |
51 -- 57 |
-15.2768 kcal/mol |
3.69768 kcal/mol |
6.213 kcal/mol |
16 35@LB@ | |@LB@5'-UGG...GGUGA GCCAG...UCA-3'@LB@ GAAAUAU GGCC UCCGGUU@LB@ :|||||| :||| ||||:||@LB@ UUUUAUA UCGG AGGCUAA@LB@3'-AUU...GCCGA AG UUU UGCAC...AUG-5'@LB@ | |@LB@ 74 50@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.2768 kcal/mol@LB@Unfolding Energy - mRNA 3.69768 kcal/mol@LB@Unfolding Energy - sRNA 6.213 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 51 -- 73@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 51 -- 57@LB@ |
160 |
0.006479 |
0.1413 |
b0391 |
yaiE |
-12.00 |
0.010520 |
148 -- 162 |
1 -- 15 |
UPF0345 family protein |
|
_____________147_____________163\n_____________|_______________|\n5'-GAU...CCAGC_______GC______AGUGA...GCG-3'\n______________GCCUCUG__CCCUAU\n______________:||||||__|||||:\n______________UGGAGAC__GGGAUG\n3'-AUU...UAGAA_______AU______-5'\n_____________|______________|\n_____________16_____________1\n |
148 -- 154 |
9 -- 15 |
-21.6181 kcal/mol |
3.81195 kcal/mol |
5.82808 kcal/mol |
147 163@LB@ | |@LB@5'-GAU...CCAGC GC AGUGA...GCG-3'@LB@ GCCUCUG CCCUAU@LB@ :|||||| |||||:@LB@ UGGAGAC GGGAUG@LB@3'-AUU...UAGAA AU -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -21.6181 kcal/mol@LB@Unfolding Energy - mRNA 3.81195 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 9 -- 15@LB@ |
167 |
0.00683 |
0.1439 |
b0387 |
yaiI |
-9.54 |
0.061403 |
53 -- 70 |
51 -- 65 |
UPF0178 family protein |
|
_____________52_________________71\n_____________|__________________|\n5'-CAC...UGCCG_______UAAAA______UUCUU...CAA-3'\n______________CAGCCAA_____CCGAUU\n______________|||||||_____||||||\n______________GUCGGUU_____GGCUAA\n3'-AUU...UAUAA_______UA_________UGCAC...AUG-5'\n_____________|__________________|\n_____________66_________________50\n |
53 -- 59 |
59 -- 65 |
-16.8495 kcal/mol |
1.14267 kcal/mol |
6.18987 kcal/mol |
52 71@LB@ | |@LB@5'-CAC...UGCCG UAAAA UUCUU...CAA-3'@LB@ CAGCCAA CCGAUU@LB@ ||||||| ||||||@LB@ GUCGGUU GGCUAA@LB@3'-AUU...UAUAA UA UGCAC...AUG-5'@LB@ | |@LB@ 66 50@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -16.8495 kcal/mol@LB@Unfolding Energy - mRNA 1.14267 kcal/mol@LB@Unfolding Energy - sRNA 6.18987 kcal/mol@LB@@LB@Position - mRNA 53 -- 70@LB@Position - sRNA 51 -- 65@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 59 -- 65@LB@ |
86 |
0.002239 |
0.09158 |
b0434 |
yajG |
-10.16 |
0.040736 |
167 -- 223 |
4 -- 56 |
putative lipoprotein |
|
_____________166____________________________________________________________224\n_____________|______________________________________________________________|\n5'-UGG...UUUUA__AAAC___CU_________UC________CCC______G__CAAAAAAAU_____U_____GUUAG...UGC-3'\n______________CC____ACG_____UAAGAG__UCUGAGAG___GAACAU_UU_________CCUCU___CCC\n______________||____|||_____|||:||__|||||:||___||||||_||_________|||||___|||\n______________GG____UGC_____AUUUUC__AGACUUUC___CUUGUA_AA_________GGAGA___GGG\n3'-AUU...GUUUA__CUAA___ACUUC______C_________UAU______G__U_____________CAU___AUG-5'\n_____________|______________________________________________________________|\n_____________57_____________________________________________________________3\n |
187 -- 193 |
28 -- 34 |
-29.9553 kcal/mol |
7.1187 kcal/mol |
12.7017 kcal/mol |
166 224@LB@ | |@LB@5'-UGG...UUUUA AAAC CU UC CCC G CAAAAAAAU U GUUAG...UGC-3'@LB@ CC ACG UAAGAG UCUGAGAG GAACAU UU CCUCU CCC@LB@ || ||| |||:|| |||||:|| |||||| || ||||| |||@LB@ GG UGC AUUUUC AGACUUUC CUUGUA AA GGAGA GGG@LB@3'-AUU...GUUUA CUAA ACUUC C UAU G U CAU AUG-5'@LB@ | |@LB@ 57 3@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -29.9553 kcal/mol@LB@Unfolding Energy - mRNA 7.1187 kcal/mol@LB@Unfolding Energy - sRNA 12.7017 kcal/mol@LB@@LB@Position - mRNA 167 -- 223@LB@Position - sRNA 4 -- 56@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 28 -- 34@LB@ |