| 89 |
0.002377 |
0.09395 |
b4136 |
dsbD |
-10.47 |
0.032769 |
211 -- 231 |
1 -- 22 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________210____________________232\n_____________|______________________|\n5'-UGC...UCAAC_______UA_G___________UACUU...CGG-3'\n______________GCAUCUU__C_CUG_AUCCUGC\n______________:||||||__|_|||_|:|||:|\n______________UGUAGAA__G_GAC_UGGGAUG\n3'-AUU...UAUCU_______UG_A___A_______-5'\n_____________|_____________________|\n_____________23____________________1\n |
225 -- 231 |
1 -- 7 |
-23.5098 kcal/mol |
5.0672 kcal/mol |
7.99236 kcal/mol |
210 232@LB@ | |@LB@5'-UGC...UCAAC UA G UACUU...CGG-3'@LB@ GCAUCUU C CUG AUCCUGC@LB@ :|||||| | ||| |:|||:|@LB@ UGUAGAA G GAC UGGGAUG@LB@3'-AUU...UAUCU UG A A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.47 kcal/mol@LB@Hybridization Energy -23.5098 kcal/mol@LB@Unfolding Energy - mRNA 5.0672 kcal/mol@LB@Unfolding Energy - sRNA 7.99236 kcal/mol@LB@@LB@Position - mRNA 211 -- 231@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 14 |
5.486e-05 |
0.01183 |
b0420 |
dxs |
-9.76 |
0.053178 |
24 -- 31 |
1 -- 8 |
1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring |
|
_____________23_______32\n_____________|________|\n5'-ACC...GUACC________ACUUC...ACG-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
25 -- 31 |
1 -- 7 |
-13.3609 kcal/mol |
1.5078 kcal/mol |
2.11603 kcal/mol |
23 32@LB@ | |@LB@5'-ACC...GUACC ACUUC...ACG-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -13.3609 kcal/mol@LB@Unfolding Energy - mRNA 1.5078 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 24 -- 31@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 70 |
0.001199 |
0.05856 |
b0954 |
fabA |
-10.37 |
0.035200 |
228 -- 254 |
4 -- 31 |
beta-hydroxydecanoyl thioester dehydrase |
|
_____________227__________________________255\n_____________|____________________________|\n5'-GUG...AUACA_________C_U___________GU_G_GGUGA...ACA-3'\n______________AAAGA_AGA_C_UCUUGCCUCUG__C_C\n______________|||||_|||_|_||||:||||||__|_|\n______________UUUCU_UCU_G_AGAAUGGAGAC__G_G\n3'-AUU...CAGAC_____A___U_U___________AU_G_AUG-5'\n_____________|____________________________|\n_____________32___________________________3\n |
243 -- 249 |
9 -- 15 |
-26.2676 kcal/mol |
7.86183 kcal/mol |
8.05676 kcal/mol |
227 255@LB@ | |@LB@5'-GUG...AUACA C U GU G GGUGA...ACA-3'@LB@ AAAGA AGA C UCUUGCCUCUG C C@LB@ ||||| ||| | ||||:|||||| | |@LB@ UUUCU UCU G AGAAUGGAGAC G G@LB@3'-AUU...CAGAC A U U AU G AUG-5'@LB@ | |@LB@ 32 3@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -26.2676 kcal/mol@LB@Unfolding Energy - mRNA 7.86183 kcal/mol@LB@Unfolding Energy - sRNA 8.05676 kcal/mol@LB@@LB@Position - mRNA 228 -- 254@LB@Position - sRNA 4 -- 31@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 133 |
0.004686 |
0.1239 |
b3081 |
fadH |
-11.00 |
0.022420 |
2 -- 21 |
1 -- 24 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________1________________________22\n_____________|________________________|\n__________5'-U_____C__________________AUGUG...ACC-3'\n______________GGACG_CUUAUC_C___GCCCUAC\n______________|:||:_||||:|_|___:||||||\n______________CUUGU_GAAUGG_G___UGGGAUG\n3'-AUU...UCUAU_____A______A_ACA_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
15 -- 21 |
1 -- 7 |
-21.5738 kcal/mol |
2.57038 kcal/mol |
8.02158 kcal/mol |
1 22@LB@ | |@LB@ 5'-U C AUGUG...ACC-3'@LB@ GGACG CUUAUC C GCCCUAC@LB@ |:||: ||||:| | :||||||@LB@ CUUGU GAAUGG G UGGGAUG@LB@3'-AUU...UCUAU A A ACA -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -21.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.57038 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 21 |
0.0001601 |
0.02641 |
b2344 |
fadL |
-13.31 |
0.003531 |
80 -- 135 |
1 -- 58 |
long-chain fatty acid outer membrane transporter |
|
_____________79_________________________________________________________________136\n_____________|__________________________________________________________________|\n5'-UCC...AGCUG______CCUA___UCUCGCCACU________UUUCU____________________A_________ACUUC...UUU-3'\n______________GUCCGA____UAC___________GGUCUGA_____AAGAUG________UACCUC_G_ACCCUAC\n______________:|||||____|||___________|||||||_____|||||:________||||||_|_|||||||\n______________UAGGCU____AUG___________CCAGACU_____UUCUAU________AUGGAG_C_UGGGAUG\n3'-AUU...CGGUU______A______CACUUCAUUUU__________________CUUGUAGA______A_A_______-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
129 -- 135 |
1 -- 7 |
-38.7471 kcal/mol |
12.7593 kcal/mol |
12.7027 kcal/mol |
79 136@LB@ | |@LB@5'-UCC...AGCUG CCUA UCUCGCCACU UUUCU A ACUUC...UUU-3'@LB@ GUCCGA UAC GGUCUGA AAGAUG UACCUC G ACCCUAC@LB@ :||||| ||| ||||||| |||||: |||||| | |||||||@LB@ UAGGCU AUG CCAGACU UUCUAU AUGGAG C UGGGAUG@LB@3'-AUU...CGGUU A CACUUCAUUUU CUUGUAGA A A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -38.7471 kcal/mol@LB@Unfolding Energy - mRNA 12.7593 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 80 -- 135@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 143 |
0.005218 |
0.1284 |
b1922 |
fliA |
-8.86 |
0.094137 |
133 -- 141 |
50 -- 58 |
RNA polymerase sigma 28 (sigma F) factor |
|
_____________132_______142\n_____________|_________|\n5'-AGG...UAAUC_________AAAAC...UUC-3'\n______________GUCCGAUUA\n______________:||||||||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
135 -- 141 |
50 -- 56 |
-11.3914 kcal/mol |
2.23267 kcal/mol |
0.317553 kcal/mol |
132 142@LB@ | |@LB@5'-AGG...UAAUC AAAAC...UUC-3'@LB@ GUCCGAUUA@LB@ :||||||||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -11.3914 kcal/mol@LB@Unfolding Energy - mRNA 2.23267 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 133 -- 141@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 71 |
0.001214 |
0.05856 |
b1921 |
fliZ |
-11.32 |
0.017729 |
260 -- 276 |
48 -- 65 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________259________________277\n_____________|__________________|\n5'-UGC...AAACA___________C______CGCAU...AUC-3'\n______________CAGCCAGA_CC_AUUGCG\n______________||||||:|_||_|||:||\n______________GUCGGUUU_GG_UAAUGC\n3'-AUU...UAUAA________A__C______ACUUC...AUG-5'\n_____________|__________________|\n_____________66_________________47\n |
261 -- 267 |
58 -- 64 |
-20.8295 kcal/mol |
2.05358 kcal/mol |
7.47467 kcal/mol |
259 277@LB@ | |@LB@5'-UGC...AAACA C CGCAU...AUC-3'@LB@ CAGCCAGA CC AUUGCG@LB@ ||||||:| || |||:||@LB@ GUCGGUUU GG UAAUGC@LB@3'-AUU...UAUAA A C ACUUC...AUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -20.8295 kcal/mol@LB@Unfolding Energy - mRNA 2.05358 kcal/mol@LB@Unfolding Energy - sRNA 7.47467 kcal/mol@LB@@LB@Position - mRNA 260 -- 276@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 198 |
0.008802 |
0.1558 |
b1905 |
ftnA |
-8.07 |
0.149574 |
234 -- 260 |
3 -- 24 |
ferritin iron storage protein (cytoplasmic) |
|
_____________233_________________________261\n_____________|___________________________|\n5'-CAU...UUAAU_____GA_GA____GGAA_________UCACU...AUC-3'\n______________GAGCA__U__ACCU____CUGUACUCU\n______________||:||__|__||||____||||||:||\n______________CUUGU__A__UGGA____GACAUGGGA\n3'-AUU...UCUAU_____AG_A__________________UG-5'\n_____________|___________________________|\n_____________25__________________________2\n |
254 -- 260 |
3 -- 9 |
-20.546 kcal/mol |
4.48094 kcal/mol |
8.02061 kcal/mol |
233 261@LB@ | |@LB@5'-CAU...UUAAU GA GA GGAA UCACU...AUC-3'@LB@ GAGCA U ACCU CUGUACUCU@LB@ ||:|| | |||| ||||||:||@LB@ CUUGU A UGGA GACAUGGGA@LB@3'-AUU...UCUAU AG A UG-5'@LB@ | |@LB@ 25 2@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -20.546 kcal/mol@LB@Unfolding Energy - mRNA 4.48094 kcal/mol@LB@Unfolding Energy - sRNA 8.02061 kcal/mol@LB@@LB@Position - mRNA 234 -- 260@LB@Position - sRNA 3 -- 24@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 99 |
0.00311 |
0.1096 |
b2801 |
fucP |
-13.12 |
0.004165 |
162 -- 172 |
46 -- 56 |
L-fucose transporter |
|
_____________161_________173\n_____________|___________|\n5'-AUG...CAUAA___________CUUAA...CAC-3'\n______________CCGAUUACGUG\n______________|||||||||||\n______________GGCUAAUGCAC\n3'-AUU...GUUUA___________UUCAU...AUG-5'\n_____________|___________|\n_____________57__________45\n |
166 -- 172 |
46 -- 52 |
-17.4041 kcal/mol |
2.44124 kcal/mol |
1.86194 kcal/mol |
161 173@LB@ | |@LB@5'-AUG...CAUAA CUUAA...CAC-3'@LB@ CCGAUUACGUG@LB@ |||||||||||@LB@ GGCUAAUGCAC@LB@3'-AUU...GUUUA UUCAU...AUG-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -17.4041 kcal/mol@LB@Unfolding Energy - mRNA 2.44124 kcal/mol@LB@Unfolding Energy - sRNA 1.86194 kcal/mol@LB@@LB@Position - mRNA 162 -- 172@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 26 |
0.0002109 |
0.02687 |
b4122 |
fumB |
-13.50 |
0.002989 |
276 -- 286 |
47 -- 57 |
anaerobic class I fumarate hydratase (fumarase B) |
b1612 |
_____________275_________287\n_____________|___________|\n5'-UCC...UCACU___________UAGCG...ACU-3'\n______________UCCGAUUACGU\n______________|||||||||||\n______________AGGCUAAUGCA\n3'-AUU...GGUUU___________CUUCA...AUG-5'\n_____________|___________|\n_____________58__________46\n |
280 -- 286 |
47 -- 53 |
-16.5827 kcal/mol |
1.51899 kcal/mol |
1.56839 kcal/mol |
275 287@LB@ | |@LB@5'-UCC...UCACU UAGCG...ACU-3'@LB@ UCCGAUUACGU@LB@ |||||||||||@LB@ AGGCUAAUGCA@LB@3'-AUU...GGUUU CUUCA...AUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -16.5827 kcal/mol@LB@Unfolding Energy - mRNA 1.51899 kcal/mol@LB@Unfolding Energy - sRNA 1.56839 kcal/mol@LB@@LB@Position - mRNA 276 -- 286@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 47 -- 53@LB@ |
