| 144 |
0.01244 |
0.2883 |
bsu15720 |
def |
-10.99 |
0.152648 |
175 -- 193 |
31 -- 50 |
peptide deformylase |
|
_____________174___________________194\n_____________|_____________________|\n5'-GCG...UGUAA_____CAC_____________UAACA...AUG-3'\n______________GAUCU___GUCU__UGGAGGG\n______________|||||___:|||__|:|||||\n______________CUAGA___UAGA__AUCUCCC\n3'-UUU...AAAGC_____AC_____CU_______CAACC...AUA-5'\n_____________|_____________________|\n_____________51____________________30\n |
187 -- 193 |
31 -- 37 |
-18.0798 kcal/mol |
6.12249 kcal/mol |
0.970579 kcal/mol |
174 194@LB@ | |@LB@5'-GCG...UGUAA CAC UAACA...AUG-3'@LB@ GAUCU GUCU UGGAGGG@LB@ ||||| :||| |:|||||@LB@ CUAGA UAGA AUCUCCC@LB@3'-UUU...AAAGC AC CU CAACC...AUA-5'@LB@ | |@LB@ 51 30@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -18.0798 kcal/mol@LB@Unfolding Energy - mRNA 6.12249 kcal/mol@LB@Unfolding Energy - sRNA 0.970579 kcal/mol@LB@@LB@Position - mRNA 175 -- 193@LB@Position - sRNA 31 -- 50@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 154 |
0.01388 |
0.2994 |
bsu23480 |
dacF |
-14.01 |
0.046761 |
175 -- 192 |
31 -- 51 |
D-alanyl-D-alanine carboxypeptidase DacF |
|
_____________174___________________193\n_____________|_____________________|\n5'-UGG...AAAAA_____A___A___________CUUUU...UUG-3'\n______________GGAUU_UGA____AUGGAGGG\n______________||||:_|||____||:|||||\n______________CCUAG_ACU____UAUCUCCC\n3'-UUU...AAAAG_____A___AGAC________CAACC...AUA-5'\n_____________|_____________________|\n_____________52____________________30\n |
186 -- 192 |
31 -- 37 |
-18.482 kcal/mol |
3.50235 kcal/mol |
0.970589 kcal/mol |
174 193@LB@ | |@LB@5'-UGG...AAAAA A A CUUUU...UUG-3'@LB@ GGAUU UGA AUGGAGGG@LB@ ||||: ||| ||:|||||@LB@ CCUAG ACU UAUCUCCC@LB@3'-UUU...AAAAG A AGAC CAACC...AUA-5'@LB@ | |@LB@ 52 30@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.482 kcal/mol@LB@Unfolding Energy - mRNA 3.50235 kcal/mol@LB@Unfolding Energy - sRNA 0.970589 kcal/mol@LB@@LB@Position - mRNA 175 -- 192@LB@Position - sRNA 31 -- 51@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 16 |
0.0002979 |
0.06212 |
bsu28440 |
sdhA |
-14.86 |
0.032148 |
176 -- 195 |
24 -- 44 |
succinate dehydrogenase flavoprotein subunit |
|
_____________175___________________196\n_____________|_____________________|\n5'-GUG...UACUA____AC________AGA____CUAUC...CCA-3'\n______________GAUU___UAGAGGG___GGGG\n______________|||:___|||||||___||||\n______________CUAG___AUCUCCC___CCCC\n3'-UUU...UAGAA____ACU_______CAA____UUGUC...AUA-5'\n_____________|_____________________|\n_____________45____________________23\n |
182 -- 188 |
31 -- 37 |
-20.465 kcal/mol |
4.62868 kcal/mol |
0.977523 kcal/mol |
175 196@LB@ | |@LB@5'-GUG...UACUA AC AGA CUAUC...CCA-3'@LB@ GAUU UAGAGGG GGGG@LB@ |||: ||||||| ||||@LB@ CUAG AUCUCCC CCCC@LB@3'-UUU...UAGAA ACU CAA UUGUC...AUA-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -14.86 kcal/mol@LB@Hybridization Energy -20.465 kcal/mol@LB@Unfolding Energy - mRNA 4.62868 kcal/mol@LB@Unfolding Energy - sRNA 0.977523 kcal/mol@LB@@LB@Position - mRNA 176 -- 195@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 47 |
0.002107 |
0.1496 |
bsu10620 |
addB |
-16.79 |
0.012734 |
176 -- 222 |
12 -- 44 |
ATP-dependent helicase/deoxyribonuclease subunit B |
|
_____________175_____________________________________________223\n_____________|_______________________________________________|\n5'-UAG...AGAGA___AAAAAG________CUUCUAAUUU__________UUUUU_____GCAGG...AGC-3'\n______________GAU______AGAGGGGU__________GGGAGCAGAG_____AGUAG\n______________|||______||||||||__________||||:|||||_____|||||\n______________CUA______UCUCCCCA__________CCCUUGUCUC_____UCAUC\n3'-UUU...UAGAA___GACUA_________AC____________________________GAAGA...AUA-5'\n_____________|_______________________________________________|\n_____________45______________________________________________11\n |
206 -- 212 |
17 -- 23 |
-35.2405 kcal/mol |
8.50165 kcal/mol |
9.94637 kcal/mol |
175 223@LB@ | |@LB@5'-UAG...AGAGA AAAAAG CUUCUAAUUU UUUUU GCAGG...AGC-3'@LB@ GAU AGAGGGGU GGGAGCAGAG AGUAG@LB@ ||| |||||||| ||||:||||| |||||@LB@ CUA UCUCCCCA CCCUUGUCUC UCAUC@LB@3'-UUU...UAGAA GACUA AC GAAGA...AUA-5'@LB@ | |@LB@ 45 11@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -35.2405 kcal/mol@LB@Unfolding Energy - mRNA 8.50165 kcal/mol@LB@Unfolding Energy - sRNA 9.94637 kcal/mol@LB@@LB@Position - mRNA 176 -- 222@LB@Position - sRNA 12 -- 44@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 70 |
0.004864 |
0.2318 |
bsu03720 |
gerKB |
-15.05 |
0.029438 |
176 -- 191 |
30 -- 44 |
spore germination protein KB |
|
_____________175_______________192\n_____________|_________________|\n5'-UUA...GAUUA___________AA____AAGUG...GCA-3'\n______________GGUCUGA_AGA__GGGG\n______________|:|||||_|||__||||\n______________CUAGACU_UCU__CCCC\n3'-UUU...UAGAA_______A_________AACCC...AUA-5'\n_____________|_________________|\n_____________45________________29\n |
176 -- 182 |
38 -- 44 |
-18.3492 kcal/mol |
2.32731 kcal/mol |
0.969452 kcal/mol |
175 192@LB@ | |@LB@5'-UUA...GAUUA AA AAGUG...GCA-3'@LB@ GGUCUGA AGA GGGG@LB@ |:||||| ||| ||||@LB@ CUAGACU UCU CCCC@LB@3'-UUU...UAGAA A AACCC...AUA-5'@LB@ | |@LB@ 45 29@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -18.3492 kcal/mol@LB@Unfolding Energy - mRNA 2.32731 kcal/mol@LB@Unfolding Energy - sRNA 0.969452 kcal/mol@LB@@LB@Position - mRNA 176 -- 191@LB@Position - sRNA 30 -- 44@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 138 |
0.01215 |
0.2883 |
bsu17940 |
yneI |
-15.06 |
0.029368 |
176 -- 197 |
30 -- 52 |
plasmid maintenance protein CcdB |
|
_____________175_____________________198\n_____________|_______________________|\n5'-GAA...AUCUG____AA_C____GU_________AAUAU...CGG-3'\n______________UGGA__U_GAUU___UGGAGGGG\n______________:|||__|_|||:___|:||||||\n______________GCCU__A_CUAG___AUCUCCCC\n3'-UUU...AAAAA____AG_A____ACU________AACCC...AUA-5'\n_____________|_______________________|\n_____________53______________________29\n |
191 -- 197 |
30 -- 36 |
-21.3361 kcal/mol |
5.29839 kcal/mol |
0.979974 kcal/mol |
175 198@LB@ | |@LB@5'-GAA...AUCUG AA C GU AAUAU...CGG-3'@LB@ UGGA U GAUU UGGAGGGG@LB@ :||| | |||: |:||||||@LB@ GCCU A CUAG AUCUCCCC@LB@3'-UUU...AAAAA AG A ACU AACCC...AUA-5'@LB@ | |@LB@ 53 29@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -21.3361 kcal/mol@LB@Unfolding Energy - mRNA 5.29839 kcal/mol@LB@Unfolding Energy - sRNA 0.979974 kcal/mol@LB@@LB@Position - mRNA 176 -- 197@LB@Position - sRNA 30 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 48 |
0.002156 |
0.1498 |
bsu34050 |
yvfV |
-12.63 |
0.082536 |
177 -- 196 |
28 -- 46 |
lactate utilization protein A |
|
_____________176__________________197\n_____________|____________________|\n5'-UCG...AUAUA____GGA___G_________CAUCA...UUG-3'\n______________UUGG___UGA_AGAGGGGUU\n______________|||:___|||_|||||||||\n______________AACU___ACU_UCUCCCCAA\n3'-UUU...CCUAG____AG____A_________CCCCU...AUA-5'\n_____________|____________________|\n_____________47___________________27\n |
190 -- 196 |
28 -- 34 |
-21.1804 kcal/mol |
7.57881 kcal/mol |
0.97023 kcal/mol |
176 197@LB@ | |@LB@5'-UCG...AUAUA GGA G CAUCA...UUG-3'@LB@ UUGG UGA AGAGGGGUU@LB@ |||: ||| |||||||||@LB@ AACU ACU UCUCCCCAA@LB@3'-UUU...CCUAG AG A CCCCU...AUA-5'@LB@ | |@LB@ 47 27@LB@@LB@@LB@Energy -12.63 kcal/mol@LB@Hybridization Energy -21.1804 kcal/mol@LB@Unfolding Energy - mRNA 7.57881 kcal/mol@LB@Unfolding Energy - sRNA 0.97023 kcal/mol@LB@@LB@Position - mRNA 177 -- 196@LB@Position - sRNA 28 -- 46@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 187 |
0.01872 |
0.3269 |
bsu10530 |
ntdC |
-12.62 |
0.082941 |
177 -- 192 |
32 -- 53 |
NTD biosynthesis operon putative oxidoreductase NtdC |
|
_____________176____________________193\n_____________|______________________|\n5'-CCU...AUUAA_______A______________AAAUA...ACA-3'\n______________UUGGAUC_UGA______GGAGG\n______________|:|||||_|||______:||||\n______________AGCCUAG_ACU______UCUCC\n3'-UUU...AAAAA_______A___AGACUA_____CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
177 -- 183 |
47 -- 53 |
-16.8717 kcal/mol |
3.27102 kcal/mol |
0.981755 kcal/mol |
176 193@LB@ | |@LB@5'-CCU...AUUAA A AAAUA...ACA-3'@LB@ UUGGAUC UGA GGAGG@LB@ |:||||| ||| :||||@LB@ AGCCUAG ACU UCUCC@LB@3'-UUU...AAAAA A AGACUA CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -16.8717 kcal/mol@LB@Unfolding Energy - mRNA 3.27102 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 177 -- 192@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 51 |
0.002362 |
0.1545 |
bsu28450 |
sdhC |
-14.17 |
0.043697 |
178 -- 219 |
14 -- 47 |
succinate dehydrogenase cytochrome b558 subunit |
|
_____________177_________________________________________220\n_____________|___________________________________________|\n5'-AAA...UCGCA_______AAAC______UAAAGUAAU__CU_____________UUUAU...AGU-3'\n______________CUU_AUC____AGGGGG_________GU__GGGAACAGAGAGU\n______________|||_|||____||:|||_________||__|||||||||||||\n______________GAA_UAG____UCUCCC_________CA__CCCUUGUCUCUCA\n3'-UUU...GCCUA___C___ACUA_________________AC_____________UCGAA...AUA-5'\n_____________|___________________________________________|\n_____________48__________________________________________13\n |
213 -- 219 |
14 -- 20 |
-33.4599 kcal/mol |
9.41028 kcal/mol |
9.88362 kcal/mol |
177 220@LB@ | |@LB@5'-AAA...UCGCA AAAC UAAAGUAAU CU UUUAU...AGU-3'@LB@ CUU AUC AGGGGG GU GGGAACAGAGAGU@LB@ ||| ||| ||:||| || |||||||||||||@LB@ GAA UAG UCUCCC CA CCCUUGUCUCUCA@LB@3'-UUU...GCCUA C ACUA AC UCGAA...AUA-5'@LB@ | |@LB@ 48 13@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -33.4599 kcal/mol@LB@Unfolding Energy - mRNA 9.41028 kcal/mol@LB@Unfolding Energy - sRNA 9.88362 kcal/mol@LB@@LB@Position - mRNA 178 -- 219@LB@Position - sRNA 14 -- 47@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 76 |
0.005654 |
0.2441 |
bsu14240 |
rok |
-14.05 |
0.045854 |
178 -- 222 |
9 -- 42 |
repressor rok |
|
_____________177______________________________________________223\n_____________|________________________________________________|\n5'-UUA...UUAAU______________ACAU__A_____GUUUAAUGAA____________UGCGC...UAU-3'\n______________UUUGAUAG_GGGGU____UG_GGAAU__________AGAGA__AGCUU\n______________|:||||||_|||||____||_||||:__________|||||__|||||\n______________AGACUAUC_CCCCA____AC_CCUUG__________UCUCU__UCGAA\n3'-UUU...GAACU________U___________C____________________CA_____GAGAGAUA-5'\n_____________|________________________________________________|\n_____________43_______________________________________________8\n |
179 -- 185 |
35 -- 41 |
-31.6296 kcal/mol |
7.67652 kcal/mol |
9.89852 kcal/mol |
177 223@LB@ | |@LB@5'-UUA...UUAAU ACAU A GUUUAAUGAA UGCGC...UAU-3'@LB@ UUUGAUAG GGGGU UG GGAAU AGAGA AGCUU@LB@ |:|||||| ||||| || ||||: ||||| |||||@LB@ AGACUAUC CCCCA AC CCUUG UCUCU UCGAA@LB@3'-UUU...GAACU U C CA GAGAGAUA-5'@LB@ | |@LB@ 43 8@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -31.6296 kcal/mol@LB@Unfolding Energy - mRNA 7.67652 kcal/mol@LB@Unfolding Energy - sRNA 9.89852 kcal/mol@LB@@LB@Position - mRNA 178 -- 222@LB@Position - sRNA 9 -- 42@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 35 -- 41@LB@ |
