141 |
0.01225 |
0.2883 |
bsu32310 |
yutD |
-11.41 |
0.131333 |
145 -- 158 |
24 -- 40 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12770717 |
|
_____________144_______________159\n_____________|_________________|\n5'-ACA...GCAAU________AC_______CAAUG...AUA-3'\n______________UGAUGGGG_____GGGG\n______________||||:|:|_____||||\n______________ACUAUCUC_____CCCC\n3'-UUU...ACUAG________CCCAA____UUGUC...AUA-5'\n_____________|_________________|\n_____________41________________23\n |
146 -- 152 |
33 -- 39 |
-14.827 kcal/mol |
2.62921 kcal/mol |
0.790979 kcal/mol |
144 159@LB@ | |@LB@5'-ACA...GCAAU AC CAAUG...AUA-3'@LB@ UGAUGGGG GGGG@LB@ ||||:|:| ||||@LB@ ACUAUCUC CCCC@LB@3'-UUU...ACUAG CCCAA UUGUC...AUA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -14.827 kcal/mol@LB@Unfolding Energy - mRNA 2.62921 kcal/mol@LB@Unfolding Energy - sRNA 0.790979 kcal/mol@LB@@LB@Position - mRNA 145 -- 158@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 33 -- 39@LB@ |
98 |
0.008247 |
0.2778 |
bsu19360 |
odhB |
-11.30 |
0.136272 |
146 -- 191 |
23 -- 51 |
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex |
|
_____________145____________________________________________192\n_____________|______________________________________________|\n5'-AAG...GAACA___ACGUA___U_________CUU_ACUCGCAAAAACUAAG_____AAUGA...AAU-3'\n______________GGA_____UUG_AUCUGAUAG___G________________GGGGA\n______________|||_____|||_|||||||||___|________________|||||\n______________CCU_____AAC_UAGACUAUC___C________________CCCCU\n3'-UUU...AAAAG___AG________________UCC_CAA__________________UGUCU...AUA-5'\n_____________|______________________________________________|\n_____________52_____________________________________________22\n |
160 -- 166 |
35 -- 41 |
-19.511 kcal/mol |
7.22607 kcal/mol |
0.980049 kcal/mol |
145 192@LB@ | |@LB@5'-AAG...GAACA ACGUA U CUU ACUCGCAAAAACUAAG AAUGA...AAU-3'@LB@ GGA UUG AUCUGAUAG G GGGGA@LB@ ||| ||| ||||||||| | |||||@LB@ CCU AAC UAGACUAUC C CCCCU@LB@3'-UUU...AAAAG AG UCC CAA UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -19.511 kcal/mol@LB@Unfolding Energy - mRNA 7.22607 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 146 -- 191@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 35 -- 41@LB@ |
149 |
0.01325 |
0.2966 |
bsu07610 |
citM |
-7.43 |
0.445360 |
149 -- 162 |
15 -- 27 |
Mg(2+)/citrate complex secondary transporter |
|
_____________148____________163\n_____________|______________|\n5'-AUU...AAAAA_______A______AAAAA...UUG-3'\n______________GGGGAGU_AGGGAG\n______________|||||::_||:|||\n______________CCCCUUG_UCUCUC\n3'-UUU...CCCAA______________AUCGA...AUA-5'\n_____________|______________|\n_____________28_____________14\n |
149 -- 155 |
21 -- 27 |
-17.4184 kcal/mol |
3.9771 kcal/mol |
6.01129 kcal/mol |
148 163@LB@ | |@LB@5'-AUU...AAAAA A AAAAA...UUG-3'@LB@ GGGGAGU AGGGAG@LB@ |||||:: ||:|||@LB@ CCCCUUG UCUCUC@LB@3'-UUU...CCCAA AUCGA...AUA-5'@LB@ | |@LB@ 28 14@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -17.4184 kcal/mol@LB@Unfolding Energy - mRNA 3.9771 kcal/mol@LB@Unfolding Energy - sRNA 6.01129 kcal/mol@LB@@LB@Position - mRNA 149 -- 162@LB@Position - sRNA 15 -- 27@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 21 -- 27@LB@ |
194 |
0.01929 |
0.3269 |
bsu14860 |
pycA |
-10.87 |
0.159030 |
149 -- 193 |
23 -- 51 |
pyruvate carboxylase |
|
_____________148___________________________________________194\n_____________|_____________________________________________|\n5'-GGG...GGGAA____AUUCCGCUA_______UUAUAUUCCAUUC____AAG_____GAAAA...UUG-3'\n______________GGAU_________UGAUAGA_____________GGGU___GGGGA\n______________||||_________|||||||_____________||||___|||||\n______________CCUA_________ACUAUCU_____________CCCA___CCCCU\n3'-UUU...AAAAG____GAACUAG_________C________________A_______UGUCU...AUA-5'\n_____________|_____________________________________________|\n_____________52____________________________________________22\n |
162 -- 168 |
34 -- 40 |
-22.9068 kcal/mol |
11.0566 kcal/mol |
0.980049 kcal/mol |
148 194@LB@ | |@LB@5'-GGG...GGGAA AUUCCGCUA UUAUAUUCCAUUC AAG GAAAA...UUG-3'@LB@ GGAU UGAUAGA GGGU GGGGA@LB@ |||| ||||||| |||| |||||@LB@ CCUA ACUAUCU CCCA CCCCU@LB@3'-UUU...AAAAG GAACUAG C A UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -22.9068 kcal/mol@LB@Unfolding Energy - mRNA 11.0566 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 149 -- 193@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 34 -- 40@LB@ |
29 |
0.0009972 |
0.1113 |
bsu38140 |
qoxD |
-9.49 |
0.251109 |
150 -- 190 |
24 -- 51 |
quinol oxidase subunit 4 |
|
_____________149_______________________________________191\n_____________|_________________________________________|\n5'-UUU...UGUAU_______C____UUAC___UGUCUAUCUCAU___A______GGUCU...CAG-3'\n______________GGAUUUU_AUCU____AGG____________GGG_UUGGGG\n______________||||:||_||||____||:____________|||_||||||\n______________CCUAGAA_UAGA____UCU____________CCC_AACCCC\n3'-UUU...AAAAG_______C____CUA___________________C______UUGUC...AUA-5'\n_____________|_________________________________________|\n_____________52________________________________________23\n |
150 -- 156 |
45 -- 51 |
-23.5355 kcal/mol |
13.0692 kcal/mol |
0.978921 kcal/mol |
149 191@LB@ | |@LB@5'-UUU...UGUAU C UUAC UGUCUAUCUCAU A GGUCU...CAG-3'@LB@ GGAUUUU AUCU AGG GGG UUGGGG@LB@ ||||:|| |||| ||: ||| ||||||@LB@ CCUAGAA UAGA UCU CCC AACCCC@LB@3'-UUU...AAAAG C CUA C UUGUC...AUA-5'@LB@ | |@LB@ 52 23@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -23.5355 kcal/mol@LB@Unfolding Energy - mRNA 13.0692 kcal/mol@LB@Unfolding Energy - sRNA 0.978921 kcal/mol@LB@@LB@Position - mRNA 150 -- 190@LB@Position - sRNA 24 -- 51@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 45 -- 51@LB@ |
148 |
0.01313 |
0.296 |
bsu02100 |
cypC |
-16.43 |
0.015277 |
151 -- 198 |
11 -- 53 |
fatty-acid peroxygenase |
|
_____________150______________________________________________199\n_____________|________________________________________________|\n5'-CAA...UAUAG_____AGAUAACG___AAA_______UAAAAA____G_C_____A___GGAUG...AUU-3'\n______________UCGGA________UGA___UAGAGGG______GGAA_G_AGGGU_AGC\n______________|||||________|||___|||||||______||||_:_||:||_|||\n______________AGCCU________ACU___AUCUCCC______CCUU_U_UCUCA_UCG\n3'-UUU...AAAAA_____AGAACUAG_____________CAACC_____G_C_________AAGAG...AUA-5'\n_____________|________________________________________________|\n_____________54_______________________________________________10\n |
170 -- 176 |
31 -- 37 |
-31.9294 kcal/mol |
5.5363 kcal/mol |
9.96369 kcal/mol |
150 199@LB@ | |@LB@5'-CAA...UAUAG AGAUAACG AAA UAAAAA G C A GGAUG...AUU-3'@LB@ UCGGA UGA UAGAGGG GGAA G AGGGU AGC@LB@ ||||| ||| ||||||| |||| : ||:|| |||@LB@ AGCCU ACU AUCUCCC CCUU U UCUCA UCG@LB@3'-UUU...AAAAA AGAACUAG CAACC G C AAGAG...AUA-5'@LB@ | |@LB@ 54 10@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -31.9294 kcal/mol@LB@Unfolding Energy - mRNA 5.5363 kcal/mol@LB@Unfolding Energy - sRNA 9.96369 kcal/mol@LB@@LB@Position - mRNA 151 -- 198@LB@Position - sRNA 11 -- 53@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 31 -- 37@LB@ |
8 |
5.206e-05 |
0.02171 |
bsu37180 |
fadF |
-12.43 |
0.089383 |
154 -- 199 |
26 -- 74 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 17189250; Product type pe : enzyme' |
|
_____________153____________________________________________________200\n_____________|______________________________________________________|\n5'-CAA...AGAUU_________G_GA___________C______U___A_UAAAA______AA____AAUGA...ACA-3'\n______________CGGGGGUAG_G__________UCG_GGUCUU_AUC_G_____AGGGGG__UUGG\n______________|||||||||_|__________|||_|:||||_|||_|_____||:|||__||||\n______________GCCCCCAUC_C__________AGC_CUAGAA_UAG_C_____UCUCCC__AACC\n3'-UUU...GAACC_________G_GGUUCAAAAA__________C___A_UA_________C_____CCUUG...AUA-5'\n_____________|______________________________________________________|\n_____________75_____________________________________________________25\n |
156 -- 162 |
66 -- 72 |
-40.4869 kcal/mol |
12.2576 kcal/mol |
15.8011 kcal/mol |
153 200@LB@ | |@LB@5'-CAA...AGAUU G GA C U A UAAAA AA AAUGA...ACA-3'@LB@ CGGGGGUAG G UCG GGUCUU AUC G AGGGGG UUGG@LB@ ||||||||| | ||| |:|||| ||| | ||:||| ||||@LB@ GCCCCCAUC C AGC CUAGAA UAG C UCUCCC AACC@LB@3'-UUU...GAACC G GGUUCAAAAA C A UA C CCUUG...AUA-5'@LB@ | |@LB@ 75 25@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -40.4869 kcal/mol@LB@Unfolding Energy - mRNA 12.2576 kcal/mol@LB@Unfolding Energy - sRNA 15.8011 kcal/mol@LB@@LB@Position - mRNA 154 -- 199@LB@Position - sRNA 26 -- 74@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 66 -- 72@LB@ |
57 |
0.003091 |
0.1809 |
bsu19720 |
yodR |
-13.42 |
0.059995 |
155 -- 217 |
11 -- 51 |
coenzyme A transferase subunit beta |
|
_____________154_________________________________________________________________218\n_____________|___________________________________________________________________|\n5'-GCU...ACCGG_______UG________________UACGAAGCGA____GUGAAGUGGAAAUGG__UU_________AGAAA...CCU-3'\n______________GGGUUUU___UUGA___GGGGGUUG__________GGGA_______________GC__GGGAGUAGC\n______________||:|:||___:|||___:|||||||__________||||_______________:|__|:|||||||\n______________CCUAGAA___GACU___UCCCCAAC__________CCCU_______________UG__CUCUCAUCG\n3'-UUU...AAAAG_______CUA____AUC_______________________________________U__________AAGAG...AUA-5'\n_____________|___________________________________________________________________|\n_____________52__________________________________________________________________10\n |
211 -- 217 |
11 -- 17 |
-37.5623 kcal/mol |
14.1868 kcal/mol |
9.95641 kcal/mol |
154 218@LB@ | |@LB@5'-GCU...ACCGG UG UACGAAGCGA GUGAAGUGGAAAUGG UU AGAAA...CCU-3'@LB@ GGGUUUU UUGA GGGGGUUG GGGA GC GGGAGUAGC@LB@ ||:|:|| :||| :||||||| |||| :| |:|||||||@LB@ CCUAGAA GACU UCCCCAAC CCCU UG CUCUCAUCG@LB@3'-UUU...AAAAG CUA AUC U AAGAG...AUA-5'@LB@ | |@LB@ 52 10@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -37.5623 kcal/mol@LB@Unfolding Energy - mRNA 14.1868 kcal/mol@LB@Unfolding Energy - sRNA 9.95641 kcal/mol@LB@@LB@Position - mRNA 155 -- 217@LB@Position - sRNA 11 -- 51@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
63 |
0.003897 |
0.2064 |
bsu14900 |
ctaD |
-14.39 |
0.039562 |
155 -- 192 |
22 -- 52 |
cytochrome c oxidase subunit 1 |
|
_____________154____________________________________193\n_____________|______________________________________|\n5'-GUG...AAAAG____AAGCAA__AG__A___AA___AGAUA________GGUCA...UGG-3'\n______________CGGA______GU__GG_AGA__GGG_____UUGGGGGA\n______________||||______:|__|:_|||__|||_____||||||:|\n______________GCCU______UA__CU_UCU__CCC_____AACCCCUU\n3'-UUU...AAAAA____AGAAC___GA__A___C_________________GUCUC...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________21\n |
186 -- 192 |
22 -- 28 |
-20.3858 kcal/mol |
4.11152 kcal/mol |
1.8808 kcal/mol |
154 193@LB@ | |@LB@5'-GUG...AAAAG AAGCAA AG A AA AGAUA GGUCA...UGG-3'@LB@ CGGA GU GG AGA GGG UUGGGGGA@LB@ |||| :| |: ||| ||| ||||||:|@LB@ GCCU UA CU UCU CCC AACCCCUU@LB@3'-UUU...AAAAA AGAAC GA A C GUCUC...AUA-5'@LB@ | |@LB@ 53 21@LB@@LB@@LB@Energy -14.39 kcal/mol@LB@Hybridization Energy -20.3858 kcal/mol@LB@Unfolding Energy - mRNA 4.11152 kcal/mol@LB@Unfolding Energy - sRNA 1.8808 kcal/mol@LB@@LB@Position - mRNA 155 -- 192@LB@Position - sRNA 22 -- 52@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 22 -- 28@LB@ |
111 |
0.009313 |
0.2778 |
bsu16780 |
rnjB |
-13.26 |
0.064171 |
155 -- 177 |
29 -- 51 |
ribonuclease J 2 |
|
_____________154_____________________178\n_____________|_______________________|\n5'-GCA...UAAUA___ACAAGUGA_______C____AUGAG...UAU-3'\n______________GGA________UGAUGGA_GGGU\n______________|||________||||:||_||||\n______________CCU________ACUAUCU_CCCA\n3'-UUU...AAAAG___AGAACUAG_______C____ACCCC...AUA-5'\n_____________|_______________________|\n_____________52______________________28\n |
166 -- 172 |
34 -- 40 |
-18.6769 kcal/mol |
4.44629 kcal/mol |
0.974539 kcal/mol |
154 178@LB@ | |@LB@5'-GCA...UAAUA ACAAGUGA C AUGAG...UAU-3'@LB@ GGA UGAUGGA GGGU@LB@ ||| ||||:|| ||||@LB@ CCU ACUAUCU CCCA@LB@3'-UUU...AAAAG AGAACUAG C ACCCC...AUA-5'@LB@ | |@LB@ 52 28@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -18.6769 kcal/mol@LB@Unfolding Energy - mRNA 4.44629 kcal/mol@LB@Unfolding Energy - sRNA 0.974539 kcal/mol@LB@@LB@Position - mRNA 155 -- 177@LB@Position - sRNA 29 -- 51@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 34 -- 40@LB@ |