| 182 |
0.01317 |
0.2504 |
b2101 |
yegW |
-15.40 |
0.022099 |
126 -- 162 |
3 -- 28 |
putative DNA-binding transcriptional regulator |
|
_____________125______________________________________163\n_____________|________________________________________|\n5'-CGG...UCGUU_________________AACGCCUUAAAUAA_________AUAUA...AAA-3'\n______________GAUGGG___AUUAAAGA______________GAAGCAGUG\n______________:|||||___||:|||||______________:||||||||\n______________UUACCC___UAGUUUCU______________UUUCGUCAC\n3'-UUU...GUGUU______CUG_______________________________CG-5'\n_____________|________________________________________|\n_____________29_______________________________________2\n |
156 -- 162 |
3 -- 9 |
-24.3736 kcal/mol |
6.45453 kcal/mol |
2.51813 kcal/mol |
125 163@LB@ | |@LB@5'-CGG...UCGUU AACGCCUUAAAUAA AUAUA...AAA-3'@LB@ GAUGGG AUUAAAGA GAAGCAGUG@LB@ :||||| ||:||||| :||||||||@LB@ UUACCC UAGUUUCU UUUCGUCAC@LB@3'-UUU...GUGUU CUG CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -24.3736 kcal/mol@LB@Unfolding Energy - mRNA 6.45453 kcal/mol@LB@Unfolding Energy - sRNA 2.51813 kcal/mol@LB@@LB@Position - mRNA 126 -- 162@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 145 |
0.01066 |
0.2504 |
b2153 |
folE |
-11.37 |
0.162147 |
44 -- 68 |
1 -- 21 |
GTP cyclohydrolase I |
|
_____________43________________________69\n_____________|_________________________|\n5'-CUG...UUUUA_____UGCU__U_________C___AAUUA...ACG-3'\n______________ACAUC____GA_GAAAGGCAG_GGC\n______________|||||____:|_||||:||||_|||\n______________UGUAG____UU_CUUUUCGUC_CCG\n3'-UUU...ACCCC___________U_________A___-5'\n_____________|________________________|\n_____________22_______________________1\n |
58 -- 64 |
5 -- 11 |
-23.5216 kcal/mol |
10.6442 kcal/mol |
1.51103 kcal/mol |
43 69@LB@ | |@LB@5'-CUG...UUUUA UGCU U C AAUUA...ACG-3'@LB@ ACAUC GA GAAAGGCAG GGC@LB@ ||||| :| ||||:|||| |||@LB@ UGUAG UU CUUUUCGUC CCG@LB@3'-UUU...ACCCC U A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -23.5216 kcal/mol@LB@Unfolding Energy - mRNA 10.6442 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 44 -- 68@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 74 |
0.004177 |
0.1979 |
b2155 |
cirA |
-15.75 |
0.017995 |
130 -- 157 |
1 -- 33 |
colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter |
|
_____________129________________________________158\n_____________|__________________________________|\n5'-GGA...CCGUA_________________________U_____A__GAUAA...UGG-3'\n______________CGCAA___GGGGACGU_GAAGAAGA___GUG_GC\n______________|:|||___||||||:|_:|||||:|___|||_||\n______________GUGUU___CCCCUGUA_UUUCUUUU___CAC_CG\n3'-UUU...CCGAG_____UUA________G________CGU______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
144 -- 150 |
9 -- 15 |
-28.6012 kcal/mol |
9.77062 kcal/mol |
3.07861 kcal/mol |
129 158@LB@ | |@LB@5'-GGA...CCGUA U A GAUAA...UGG-3'@LB@ CGCAA GGGGACGU GAAGAAGA GUG GC@LB@ |:||| ||||||:| :|||||:| ||| ||@LB@ GUGUU CCCCUGUA UUUCUUUU CAC CG@LB@3'-UUU...CCGAG UUA G CGU -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -15.75 kcal/mol@LB@Hybridization Energy -28.6012 kcal/mol@LB@Unfolding Energy - mRNA 9.77062 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 130 -- 157@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 141 |
0.01037 |
0.2504 |
b2161 |
nupX |
-15.31 |
0.023296 |
54 -- 80 |
1 -- 26 |
nucleoside permease |
b2164 |
_____________53____________________________81\n_____________|_____________________________|\n5'-UUG...GGUUC_______UA_________U_______C__GGCUA...GCG-3'\n______________UGGGGAU__GUCGAAGAG__GC_GUG_GC\n______________||||||:__:||:||||:__||_|||_||\n______________ACCCCUG__UAGUUUCUU__CG_CAC_CG\n3'-UUU...GUUUU__________________UU__U______-5'\n_____________|____________________________|\n_____________27___________________________1\n |
65 -- 71 |
11 -- 17 |
-27.7009 kcal/mol |
9.87339 kcal/mol |
2.51842 kcal/mol |
53 81@LB@ | |@LB@5'-UUG...GGUUC UA U C GGCUA...GCG-3'@LB@ UGGGGAU GUCGAAGAG GC GUG GC@LB@ ||||||: :||:||||: || ||| ||@LB@ ACCCCUG UAGUUUCUU CG CAC CG@LB@3'-UUU...GUUUU UU U -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -27.7009 kcal/mol@LB@Unfolding Energy - mRNA 9.87339 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 155 |
0.01136 |
0.2504 |
b2168 |
fruK |
-7.75 |
0.545043 |
91 -- 105 |
7 -- 22 |
fructose-1-phosphate kinase |
|
_____________90_______________106\n_____________|________________|\n5'-AAA...CACUU________________CAUCG...CCA-3'\n______________GGCGUU_AAGAAAGGU\n______________|:|:|:_||||||:|:\n______________CUGUAG_UUCUUUUCG\n3'-UUU...UACCC______U_________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
99 -- 105 |
7 -- 13 |
-14.0922 kcal/mol |
5.75103 kcal/mol |
0.590875 kcal/mol |
90 106@LB@ | |@LB@5'-AAA...CACUU CAUCG...CCA-3'@LB@ GGCGUU AAGAAAGGU@LB@ |:|:|: ||||||:|:@LB@ CUGUAG UUCUUUUCG@LB@3'-UUU...UACCC U UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -7.75 kcal/mol@LB@Hybridization Energy -14.0922 kcal/mol@LB@Unfolding Energy - mRNA 5.75103 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 91 -- 105@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 72 |
0.004007 |
0.1953 |
b2175 |
mepS |
-13.55 |
0.059767 |
177 -- 194 |
6 -- 23 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________176________________195\n_____________|__________________|\n5'-CAA...GUUAA____U__________A__AACAA...CAA-3'\n______________GGAC_UCAAGGGAAA_CA\n______________||||_||||:|:|||_||\n______________CCUG_AGUUUCUUUU_GU\n3'-UUU...UUACC____U__________C__CACCG-5'\n_____________|__________________|\n_____________24_________________5\n |
185 -- 191 |
9 -- 15 |
-17.1277 kcal/mol |
2.97845 kcal/mol |
0.599171 kcal/mol |
176 195@LB@ | |@LB@5'-CAA...GUUAA U A AACAA...CAA-3'@LB@ GGAC UCAAGGGAAA CA@LB@ |||| ||||:|:||| ||@LB@ CCUG AGUUUCUUUU GU@LB@3'-UUU...UUACC U C CACCG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.55 kcal/mol@LB@Hybridization Energy -17.1277 kcal/mol@LB@Unfolding Energy - mRNA 2.97845 kcal/mol@LB@Unfolding Energy - sRNA 0.599171 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 6 |
9.344e-05 |
0.05465 |
b2215 |
ompC |
-14.72 |
0.032428 |
133 -- 159 |
1 -- 28 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________132____________________________160\n_____________|______________________________|\n5'-AUC...UGAUU____A___UUA_____UAU___________AUAAA...AUC-3'\n______________AAUG_GGG___AUCAG______GCAGUGGC\n______________||||_|||___||||:______||||||||\n______________UUAC_CCC___UAGUU______CGUCACCG\n3'-UUU...GUGUU________UG______UCUUUU________-5'\n_____________|_____________________________|\n_____________29____________________________1\n |
153 -- 159 |
1 -- 7 |
-26.8714 kcal/mol |
9.63393 kcal/mol |
2.519 kcal/mol |
132 160@LB@ | |@LB@5'-AUC...UGAUU A UUA UAU AUAAA...AUC-3'@LB@ AAUG GGG AUCAG GCAGUGGC@LB@ |||| ||| ||||: ||||||||@LB@ UUAC CCC UAGUU CGUCACCG@LB@3'-UUU...GUGUU UG UCUUUU -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -26.8714 kcal/mol@LB@Unfolding Energy - mRNA 9.63393 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 133 -- 159@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 35 |
0.00168 |
0.1648 |
b2231 |
gyrA |
-15.33 |
0.023033 |
230 -- 249 |
7 -- 25 |
DNA gyrase (type II topoisomerase) subunit A |
|
_____________229__________________250\n_____________|____________________|\n5'-AGC...ACACC__UCA_______________UGAAG...CGC-3'\n______________GG___ACAUUGAGGAAGAGC\n______________||___||||::|:|||:|||\n______________CC___UGUAGUUUCUUUUCG\n3'-UUU...UUUUA__CC________________UCACCG-5'\n_____________|____________________|\n_____________26___________________6\n |
243 -- 249 |
7 -- 13 |
-19.3394 kcal/mol |
3.30418 kcal/mol |
0.70626 kcal/mol |
229 250@LB@ | |@LB@5'-AGC...ACACC UCA UGAAG...CGC-3'@LB@ GG ACAUUGAGGAAGAGC@LB@ || ||||::|:|||:|||@LB@ CC UGUAGUUUCUUUUCG@LB@3'-UUU...UUUUA CC UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -15.33 kcal/mol@LB@Hybridization Energy -19.3394 kcal/mol@LB@Unfolding Energy - mRNA 3.30418 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 230 -- 249@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 79 |
0.004643 |
0.2062 |
b2264 |
menD |
-12.62 |
0.093644 |
52 -- 86 |
1 -- 30 |
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase |
|
_____________51_____________________________________87\n_____________|______________________________________|\n5'-CGU...GAGCA_______CAGGAAAUC____A_____C___________UGCGU...GUU-3'\n______________AGAGUGG_________GACA_CAAAG___GGCAG_GGC\n______________|:|:|||_________||||_|||||___:||||_|||\n______________UUUUACC_________CUGU_GUUUC___UCGUC_CCG\n3'-UUU...AGGUG_______C____________A_____UUU_____A___-5'\n_____________|_____________________________________|\n_____________31____________________________________1\n |
52 -- 58 |
24 -- 30 |
-24.8101 kcal/mol |
9.6737 kcal/mol |
2.51911 kcal/mol |
51 87@LB@ | |@LB@5'-CGU...GAGCA CAGGAAAUC A C UGCGU...GUU-3'@LB@ AGAGUGG GACA CAAAG GGCAG GGC@LB@ |:|:||| |||| ||||| :|||| |||@LB@ UUUUACC CUGU GUUUC UCGUC CCG@LB@3'-UUU...AGGUG C A UUU A -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -24.8101 kcal/mol@LB@Unfolding Energy - mRNA 9.6737 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 52 -- 86@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 197 |
0.0142 |
0.2529 |
b2295 |
yfbV |
-14.79 |
0.031139 |
250 -- 276 |
1 -- 25 |
UPF0208 family inner membrane protein |
|
_____________249_________________________277\n_____________|___________________________|\n5'-AUG...UCGCC_______G__UUACUC____AC_____CGCUG...CGG-3'\n______________GGGGACA_CA______AAAG__GUGGC\n______________|||||||_||______||||__|||||\n______________CCCCUGU_GU______UUUC__CACCG\n3'-UUU...UUUUA_______A__UUCU______GU_____-5'\n_____________|__________________________|\n_____________26_________________________1\n |
250 -- 256 |
19 -- 25 |
-25.4481 kcal/mol |
8.13822 kcal/mol |
2.51748 kcal/mol |
249 277@LB@ | |@LB@5'-AUG...UCGCC G UUACUC AC CGCUG...CGG-3'@LB@ GGGGACA CA AAAG GUGGC@LB@ ||||||| || |||| |||||@LB@ CCCCUGU GU UUUC CACCG@LB@3'-UUU...UUUUA A UUCU GU -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.79 kcal/mol@LB@Hybridization Energy -25.4481 kcal/mol@LB@Unfolding Energy - mRNA 8.13822 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 250 -- 276@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 19 -- 25@LB@ |
