16 |
0.0006527 |
0.1243 |
b2563 |
acpS |
-16.60 |
0.010715 |
145 -- 164 |
1 -- 23 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________144_____________________165\n_____________|_______________________|\n5'-GCC...UGACC______G_____U__________AGAAA...GCG-3'\n______________GGAC_U_AAAGA___GCGGUGGC\n______________||||_|_|||||___||:|||||\n______________CCUG_A_UUUCU___CGUCACCG\n3'-UUU...UUACC____U_G_____UUU________-5'\n_____________|______________________|\n_____________24_____________________1\n |
158 -- 164 |
1 -- 7 |
-25.7246 kcal/mol |
7.54829 kcal/mol |
1.57928 kcal/mol |
144 165@LB@ | |@LB@5'-GCC...UGACC G U AGAAA...GCG-3'@LB@ GGAC U AAAGA GCGGUGGC@LB@ |||| | ||||| ||:|||||@LB@ CCUG A UUUCU CGUCACCG@LB@3'-UUU...UUACC U G UUU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -25.7246 kcal/mol@LB@Unfolding Energy - mRNA 7.54829 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 145 -- 164@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 1 -- 7@LB@ |
23 |
0.0008148 |
0.1243 |
b2573 |
rpoE |
-12.22 |
0.112158 |
248 -- 284 |
1 -- 24 |
RNA polymerase sigma E factor |
|
_____________247___________________________________285\n_____________|_____________________________________|\n5'-ACA...CAGAA____G______AAGCCUUUAACUUACU_______C__UAUCA...UGG-3'\n______________GGGA_AUCAGA________________GGUAGUG_GC\n______________||||_||||:|________________:|:||||_||\n______________CCCU_UAGUUU________________UCGUCAC_CG\n3'-UUU...UUUAC____G______CUUU______________________-5'\n_____________|____________________________________|\n_____________25___________________________________1\n |
275 -- 281 |
3 -- 9 |
-22.4239 kcal/mol |
7.75978 kcal/mol |
2.44282 kcal/mol |
247 285@LB@ | |@LB@5'-ACA...CAGAA G AAGCCUUUAACUUACU C UAUCA...UGG-3'@LB@ GGGA AUCAGA GGUAGUG GC@LB@ |||| ||||:| :|:|||| ||@LB@ CCCU UAGUUU UCGUCAC CG@LB@3'-UUU...UUUAC G CUUU -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -22.4239 kcal/mol@LB@Unfolding Energy - mRNA 7.75978 kcal/mol@LB@Unfolding Energy - sRNA 2.44282 kcal/mol@LB@@LB@Position - mRNA 248 -- 284@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 3 -- 9@LB@ |
170 |
0.01232 |
0.2504 |
b2580 |
ung |
-11.45 |
0.156876 |
183 -- 205 |
1 -- 22 |
uracil-DNA-glycosylase |
|
_____________182______________________206\n_____________|________________________|\n5'-UCU...UUGAA_______C________G__A____UAACG...CCG-3'\n______________GAU_UCG_AGGAGAGC_AG_UGGC\n______________||:_||:_||:|:|||_||_||||\n______________CUG_AGU_UCUUUUCG_UC_ACCG\n3'-UUU...UACCC___U___U________________-5'\n_____________|_______________________|\n_____________23______________________1\n |
191 -- 197 |
7 -- 13 |
-20.4372 kcal/mol |
7.45123 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-UCU...UUGAA C G A UAACG...CCG-3'@LB@ GAU UCG AGGAGAGC AG UGGC@LB@ ||: ||: ||:|:||| || ||||@LB@ CUG AGU UCUUUUCG UC ACCG@LB@3'-UUU...UACCC U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -20.4372 kcal/mol@LB@Unfolding Energy - mRNA 7.45123 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
83 |
0.005101 |
0.2147 |
b2610 |
ffh |
-14.32 |
0.040245 |
57 -- 74 |
4 -- 21 |
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
|
_____________56_________________75\n_____________|__________________|\n5'-AGG...GAGCA___AG_____________AUAGC...AAG-3'\n______________AUA__AAAGAGAAGCAGU\n______________|:|__|||||:|||||||\n______________UGU__UUUCUUUUCGUCA\n3'-UUU...ACCCC___AG_____________CCG-5'\n_____________|__________________|\n_____________22_________________3\n |
68 -- 74 |
4 -- 10 |
-18.2522 kcal/mol |
2.42435 kcal/mol |
1.51 kcal/mol |
56 75@LB@ | |@LB@5'-AGG...GAGCA AG AUAGC...AAG-3'@LB@ AUA AAAGAGAAGCAGU@LB@ |:| |||||:|||||||@LB@ UGU UUUCUUUUCGUCA@LB@3'-UUU...ACCCC AG CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -18.2522 kcal/mol@LB@Unfolding Energy - mRNA 2.42435 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 57 -- 74@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 4 -- 10@LB@ |
8 |
0.0001267 |
0.05555 |
b2697 |
alaS |
-16.66 |
0.010303 |
247 -- 274 |
1 -- 35 |
alanyl-tRNA synthetase |
|
_____________246_________________________________275\n_____________|___________________________________|\n5'-CCA...CUUUU_______UAA______________________U__CAGCA...ACG-3'\n______________UCCAUAG____GGGACAUCA______GGUAGU_GC\n______________||||:|:____|||||||||______:|:|||_||\n______________AGGUGUU____CCCUGUAGU______UCGUCA_CG\n3'-UUU...ACCCG_______UUAC_________UUCUUU______C__-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
259 -- 265 |
16 -- 22 |
-29.5579 kcal/mol |
7.86268 kcal/mol |
5.03645 kcal/mol |
246 275@LB@ | |@LB@5'-CCA...CUUUU UAA U CAGCA...ACG-3'@LB@ UCCAUAG GGGACAUCA GGUAGU GC@LB@ ||||:|: ||||||||| :|:||| ||@LB@ AGGUGUU CCCUGUAGU UCGUCA CG@LB@3'-UUU...ACCCG UUAC UUCUUU C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.5579 kcal/mol@LB@Unfolding Energy - mRNA 7.86268 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 247 -- 274@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 16 -- 22@LB@ |
147 |
0.01091 |
0.2504 |
b2720 |
hycF |
-14.84 |
0.030299 |
116 -- 133 |
1 -- 16 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________115________________134\n_____________|__________________|\n5'-CGA...CGUAA___________AA_____GCCGU...CAG-3'\n______________GAAGAAGAGCA__GUGGU\n______________:|||||:||||__||||:\n______________UUUCUUUUCGU__CACCG\n3'-UUU...UGUAG__________________-5'\n_____________|_________________|\n_____________17________________1\n |
120 -- 126 |
6 -- 12 |
-19.8629 kcal/mol |
3.67538 kcal/mol |
1.34555 kcal/mol |
115 134@LB@ | |@LB@5'-CGA...CGUAA AA GCCGU...CAG-3'@LB@ GAAGAAGAGCA GUGGU@LB@ :|||||:|||| ||||:@LB@ UUUCUUUUCGU CACCG@LB@3'-UUU...UGUAG -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -14.84 kcal/mol@LB@Hybridization Energy -19.8629 kcal/mol@LB@Unfolding Energy - mRNA 3.67538 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 116 -- 133@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 6 -- 12@LB@ |
82 |
0.005087 |
0.2147 |
b2741 |
rpoS |
-15.46 |
0.021295 |
2 -- 28 |
1 -- 25 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C___A___ACAA____UU___________AAAAA...AGG-3'\n______________GGG_ACA____GAAG__AAGGCGG_GGC\n______________|||_|||____:|||__||:||:|_|||\n______________CCC_UGU____UUUC__UUUCGUC_CCG\n3'-UUU...UUUUA___C___AG______U________A___-5'\n_____________|___________________________|\n_____________26__________________________1\n |
19 -- 25 |
5 -- 11 |
-23.9329 kcal/mol |
5.95047 kcal/mol |
2.51748 kcal/mol |
1 29@LB@ | |@LB@ 5'-C A ACAA UU AAAAA...AGG-3'@LB@ GGG ACA GAAG AAGGCGG GGC@LB@ ||| ||| :||| ||:||:| |||@LB@ CCC UGU UUUC UUUCGUC CCG@LB@3'-UUU...UUUUA C AG U A -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -15.46 kcal/mol@LB@Hybridization Energy -23.9329 kcal/mol@LB@Unfolding Energy - mRNA 5.95047 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 5 -- 11@LB@ |
127 |
0.009277 |
0.2491 |
b2781 |
mazG |
-12.70 |
0.090074 |
53 -- 69 |
8 -- 24 |
nucleoside triphosphate pyrophosphohydrolase |
|
_____________52________________70\n_____________|_________________|\n5'-UGA...CAAGA__A___A__________AACAG...CGC-3'\n______________GG_GCA_CGAAGAAAGG\n______________||_:||_|:||||||:|\n______________CC_UGU_GUUUCUUUUC\n3'-UUU...UUUAC__C___A__________GUCACCG-5'\n_____________|_________________|\n_____________25________________7\n |
63 -- 69 |
8 -- 14 |
-16.258 kcal/mol |
2.86814 kcal/mol |
0.688982 kcal/mol |
52 70@LB@ | |@LB@5'-UGA...CAAGA A A AACAG...CGC-3'@LB@ GG GCA CGAAGAAAGG@LB@ || :|| |:||||||:|@LB@ CC UGU GUUUCUUUUC@LB@3'-UUU...UUUAC C A GUCACCG-5'@LB@ | |@LB@ 25 7@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -16.258 kcal/mol@LB@Unfolding Energy - mRNA 2.86814 kcal/mol@LB@Unfolding Energy - sRNA 0.688982 kcal/mol@LB@@LB@Position - mRNA 53 -- 69@LB@Position - sRNA 8 -- 24@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 8 -- 14@LB@ |
199 |
0.01447 |
0.2552 |
b2790 |
yqcA |
-9.70 |
0.305430 |
160 -- 205 |
1 -- 31 |
short-chain flavodoxin FMN-binding |
|
_____________159_____________________________________________206\n_____________|_______________________________________________|\n5'-CUA...CGGGU________A__G__AAGUUCCUAAUC________AAAC_________GGAAA...CAA-3'\n______________CAGGAUGG_GA_AU____________CAGGGAGA____GGUA_UGGC\n______________||::||||_||_||____________||::||:|____:|:|_||||\n______________GUUUUACC_CU_UA____________GUUUCUUU____UCGU_ACCG\n3'-UUU...GAGGU________C__G______________________________C____-5'\n_____________|______________________________________________|\n_____________32_____________________________________________1\n |
187 -- 193 |
10 -- 16 |
-23.6635 kcal/mol |
11.4257 kcal/mol |
2.53929 kcal/mol |
159 206@LB@ | |@LB@5'-CUA...CGGGU A G AAGUUCCUAAUC AAAC GGAAA...CAA-3'@LB@ CAGGAUGG GA AU CAGGGAGA GGUA UGGC@LB@ ||::|||| || || ||::||:| :|:| ||||@LB@ GUUUUACC CU UA GUUUCUUU UCGU ACCG@LB@3'-UUU...GAGGU C G C -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -23.6635 kcal/mol@LB@Unfolding Energy - mRNA 11.4257 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 160 -- 205@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 10 -- 16@LB@ |
181 |
0.01309 |
0.2504 |
b2799 |
fucO |
-15.36 |
0.022654 |
183 -- 205 |
1 -- 21 |
L-1 2-propanediol oxidoreductase |
|
_____________182_____________________206\n_____________|_______________________|\n5'-CUU...GUAAA___A__________G_U_A____UAACA...CGC-3'\n______________GCA_CAAGGAGAAG_A_G_UGGC\n______________:||_|||:||:|||_|_|_||||\n______________UGU_GUUUCUUUUC_U_C_ACCG\n3'-UUU...ACCCC___A__________G________-5'\n_____________|______________________|\n_____________22_____________________1\n |
190 -- 196 |
8 -- 14 |
-20.3858 kcal/mol |
3.51699 kcal/mol |
1.51103 kcal/mol |
182 206@LB@ | |@LB@5'-CUU...GUAAA A G U A UAACA...CGC-3'@LB@ GCA CAAGGAGAAG A G UGGC@LB@ :|| |||:||:||| | | ||||@LB@ UGU GUUUCUUUUC U C ACCG@LB@3'-UUU...ACCCC A G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -20.3858 kcal/mol@LB@Unfolding Energy - mRNA 3.51699 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 8 -- 14@LB@ |