| 45 |
0.002187 |
0.1648 |
b3391 |
hofQ |
-14.99 |
0.027914 |
2 -- 20 |
1 -- 20 |
DNA catabolic putative fimbrial transporter |
|
_____________1____________________21\n_____________|____________________|\n__________5'-C__________U_________GAGGC...UAG-3'\n______________UAUCAGGGGA_GGUAG_GGC\n______________:||||::|:|_:|:||_|||\n______________GUAGUUUCUU_UCGUC_CCG\n3'-UUU...CCCCU__________U_____A___-5'\n_____________|___________________|\n_____________21__________________1\n |
5 -- 11 |
11 -- 17 |
-22.4478 kcal/mol |
5.99969 kcal/mol |
1.45855 kcal/mol |
1 21@LB@ | |@LB@ 5'-C U GAGGC...UAG-3'@LB@ UAUCAGGGGA GGUAG GGC@LB@ :||||::|:| :|:|| |||@LB@ GUAGUUUCUU UCGUC CCG@LB@3'-UUU...CCCCU U A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -22.4478 kcal/mol@LB@Unfolding Energy - mRNA 5.99969 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 2 -- 20@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 118 |
0.008241 |
0.2451 |
b3394 |
hofN |
-17.25 |
0.007000 |
1 -- 22 |
2 -- 26 |
DNA catabolic putative fimbrial assembly protein |
|
______________1________________________23\n______________|________________________|\n___________5'-_____________CU__________GGAUG...CCG-3'\n______________UGGGGGCG_CAAA____GGCGGUGG\n______________|||||:|:_||||____:||:||||\n______________ACCCCUGU_GUUU____UCGUCACC\n3'-UUU...GUUUU________A____CUUU________G-5'\n_____________|_________________________|\n_____________27________________________1\n |
16 -- 22 |
2 -- 8 |
-29.7277 kcal/mol |
9.95926 kcal/mol |
2.5184 kcal/mol |
1 23@LB@ | |@LB@ 5'- CU GGAUG...CCG-3'@LB@ UGGGGGCG CAAA GGCGGUGG@LB@ |||||:|: |||| :||:||||@LB@ ACCCCUGU GUUU UCGUCACC@LB@3'-UUU...GUUUU A CUUU G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -17.25 kcal/mol@LB@Hybridization Energy -29.7277 kcal/mol@LB@Unfolding Energy - mRNA 9.95926 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 1 -- 22@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 89 |
0.005593 |
0.2147 |
b3398 |
yrfF |
-14.72 |
0.032340 |
186 -- 206 |
1 -- 31 |
putative RcsCDB-response attenuator inner membrane protein |
|
_____________185______________________________207\n_____________|________________________________|\n5'-UUA...CUAAG_____________________________A__ACCAU...GGA-3'\n______________UAAGAUGGGGA__________AAGCA_UG_GC\n______________:||:|||||||__________|||||_||_||\n______________GUUUUACCCCU__________UUCGU_AC_CG\n3'-UUU...GAGGU___________GUAGUUUCUU_____C_____-5'\n_____________|_______________________________|\n_____________32______________________________1\n |
190 -- 196 |
21 -- 27 |
-21.8606 kcal/mol |
4.59782 kcal/mol |
2.53929 kcal/mol |
185 207@LB@ | |@LB@5'-UUA...CUAAG A ACCAU...GGA-3'@LB@ UAAGAUGGGGA AAGCA UG GC@LB@ :||:||||||| ||||| || ||@LB@ GUUUUACCCCU UUCGU AC CG@LB@3'-UUU...GAGGU GUAGUUUCUU C -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -21.8606 kcal/mol@LB@Unfolding Energy - mRNA 4.59782 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 186 -- 206@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 154 |
0.01125 |
0.2504 |
b3412 |
bioH |
-12.84 |
0.084220 |
262 -- 288 |
1 -- 28 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________261__________________________289\n_____________|____________________________|\n5'-GGC...GCACG_________UGAAUGCC___________GUUGC...ACG-3'\n______________GAUGGGGAC________GAAGU_GUGGC\n______________:||||||||________:|||:_|||||\n______________UUACCCCUG________UUUCG_CACCG\n3'-UUU...GUGUU_________UAGUUUCU_____U_____-5'\n_____________|___________________________|\n_____________29__________________________1\n |
264 -- 270 |
20 -- 26 |
-27.647 kcal/mol |
12.2839 kcal/mol |
2.519 kcal/mol |
261 289@LB@ | |@LB@5'-GGC...GCACG UGAAUGCC GUUGC...ACG-3'@LB@ GAUGGGGAC GAAGU GUGGC@LB@ :|||||||| :|||: |||||@LB@ UUACCCCUG UUUCG CACCG@LB@3'-UUU...GUGUU UAGUUUCU U -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -27.647 kcal/mol@LB@Unfolding Energy - mRNA 12.2839 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 262 -- 288@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 95 |
0.005813 |
0.2147 |
b3450 |
ugpC |
-12.76 |
0.087557 |
84 -- 111 |
1 -- 34 |
sn-glycerol-3-phosphate ABC transporter ATPase |
|
_____________83_________________________________112\n_____________|__________________________________|\n5'-GUG...AGGCA___________A________U_____________GAUGU...UCG-3'\n______________CCACGGAAUGG__AC_UCAG_GA____UGGUGGC\n______________||||::|||||__||_|||:_||____::|||||\n______________GGUGUUUUACC__UG_AGUU_CU____GUCACCG\n3'-UUU...CCCGA___________CC__U____U__UUUC_______-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
105 -- 111 |
1 -- 7 |
-27.9886 kcal/mol |
10.9582 kcal/mol |
4.26884 kcal/mol |
83 112@LB@ | |@LB@5'-GUG...AGGCA A U GAUGU...UCG-3'@LB@ CCACGGAAUGG AC UCAG GA UGGUGGC@LB@ ||||::||||| || |||: || ::|||||@LB@ GGUGUUUUACC UG AGUU CU GUCACCG@LB@3'-UUU...CCCGA CC U U UUUC -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -27.9886 kcal/mol@LB@Unfolding Energy - mRNA 10.9582 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 84 -- 111@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 177 |
0.01288 |
0.2504 |
b3455 |
livG |
-10.61 |
0.218983 |
178 -- 198 |
5 -- 24 |
branched-chain amino acid ABC transporter ATPase |
|
_____________177___________________199\n_____________|_____________________|\n5'-AUG...AAAAC__C___GCG____________GCAUG...UCG-3'\n______________GG_GCA___AAAGGAGAGCAG\n______________||_:||___||||:|:|||||\n______________CC_UGU___UUUCUUUUCGUC\n3'-UUU...UUUAC__C___AG_____________ACCG-5'\n_____________|_____________________|\n_____________25____________________4\n |
192 -- 198 |
5 -- 11 |
-19.5574 kcal/mol |
6.51739 kcal/mol |
2.42705 kcal/mol |
177 199@LB@ | |@LB@5'-AUG...AAAAC C GCG GCAUG...UCG-3'@LB@ GG GCA AAAGGAGAGCAG@LB@ || :|| ||||:|:|||||@LB@ CC UGU UUUCUUUUCGUC@LB@3'-UUU...UUUAC C AG ACCG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -19.5574 kcal/mol@LB@Unfolding Energy - mRNA 6.51739 kcal/mol@LB@Unfolding Energy - sRNA 2.42705 kcal/mol@LB@@LB@Position - mRNA 178 -- 198@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 30 |
0.001442 |
0.1635 |
b3458 |
livK |
-12.84 |
0.084462 |
180 -- 215 |
6 -- 33 |
leucine transporter subunit |
|
_____________179___________________________________216\n_____________|_____________________________________|\n5'-UGU...AACAU______________UUUUGACU__G___C____U___AAAAC...CGA-3'\n______________CAC_GAAUGGGGAU________AU_AAA_GGAA_GCG\n______________|||_:||||||||:________||_|||_|:||_||:\n______________GUG_UUUACCCCUG________UA_UUU_CUUU_CGU\n3'-UUU...CCGAG___U____________________G________U___CACCG-5'\n_____________|_____________________________________|\n_____________34____________________________________5\n |
186 -- 192 |
20 -- 26 |
-21.4141 kcal/mol |
5.49822 kcal/mol |
3.07787 kcal/mol |
179 216@LB@ | |@LB@5'-UGU...AACAU UUUUGACU G C U AAAAC...CGA-3'@LB@ CAC GAAUGGGGAU AU AAA GGAA GCG@LB@ ||| :||||||||: || ||| |:|| ||:@LB@ GUG UUUACCCCUG UA UUU CUUU CGU@LB@3'-UUU...CCGAG U G U CACCG-5'@LB@ | |@LB@ 34 5@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -21.4141 kcal/mol@LB@Unfolding Energy - mRNA 5.49822 kcal/mol@LB@Unfolding Energy - sRNA 3.07787 kcal/mol@LB@@LB@Position - mRNA 180 -- 215@LB@Position - sRNA 6 -- 33@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 48 |
0.002302 |
0.1648 |
b3460 |
livJ |
-15.11 |
0.026091 |
183 -- 229 |
1 -- 30 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________182_____________________________________________230\n_____________|_______________________________________________|\n5'-AAU...CCAGA___________UC___GGAUGAACAUAA____U______UUAC____AGGAU...CAA-3'\n______________AGAAUGGGGAU__UCA____________AGGG_AAAGCG____UGGC\n______________|:||||||||:__|||____________|:|:_|||||:____||||\n______________UUUUACCCCUG__AGU____________UUCU_UUUCGU____ACCG\n3'-UUU...AGGUG___________U___________________________C_______-5'\n_____________|______________________________________________|\n_____________31_____________________________________________1\n |
187 -- 193 |
20 -- 26 |
-27.0033 kcal/mol |
9.37443 kcal/mol |
2.51911 kcal/mol |
182 230@LB@ | |@LB@5'-AAU...CCAGA UC GGAUGAACAUAA U UUAC AGGAU...CAA-3'@LB@ AGAAUGGGGAU UCA AGGG AAAGCG UGGC@LB@ |:||||||||: ||| |:|: |||||: ||||@LB@ UUUUACCCCUG AGU UUCU UUUCGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -27.0033 kcal/mol@LB@Unfolding Energy - mRNA 9.37443 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 183 -- 229@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 121 |
0.008566 |
0.2484 |
b3466 |
yhhL |
-13.33 |
0.066537 |
119 -- 150 |
1 -- 32 |
DUF1145 family protein |
|
_____________118_________________________________151\n_____________|___________________________________|\n5'-GUU...UUCCA_____C___UCAUU_____________________GGGUC...UUA-3'\n______________GCAAA_UGG_____ACAUC_GGGAAAA__AGUGGC\n______________:||||_|||_____|||||_::|||||__||||||\n______________UGUUU_ACC_____UGUAG_UUCUUUU__UCACCG\n3'-UUU...CGAGG_____U___CC________U_______CG______-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
138 -- 144 |
9 -- 15 |
-23.4834 kcal/mol |
7.61069 kcal/mol |
2.53929 kcal/mol |
118 151@LB@ | |@LB@5'-GUU...UUCCA C UCAUU GGGUC...UUA-3'@LB@ GCAAA UGG ACAUC GGGAAAA AGUGGC@LB@ :|||| ||| ||||| ::||||| ||||||@LB@ UGUUU ACC UGUAG UUCUUUU UCACCG@LB@3'-UUU...CGAGG U CC U CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -23.4834 kcal/mol@LB@Unfolding Energy - mRNA 7.61069 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 119 -- 150@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 31 |
0.001481 |
0.1635 |
b3468 |
yhhN |
-14.35 |
0.039524 |
32 -- 52 |
1 -- 21 |
TMEM86 family putative inner membrane protein |
|
_____________31____________________53\n_____________|_____________________|\n5'-CGA...UGAUA___A__________A______UUGCU...UAA-3'\n______________ACA_UAAAGAAAAG_GGUGGU\n______________|||_:|||||||||_:||||:\n______________UGU_GUUUCUUUUC_UCACCG\n3'-UUU...ACCCC___A__________G______-5'\n_____________|____________________|\n_____________22___________________1\n |
39 -- 45 |
8 -- 14 |
-21.1877 kcal/mol |
5.32481 kcal/mol |
1.51103 kcal/mol |
31 53@LB@ | |@LB@5'-CGA...UGAUA A A UUGCU...UAA-3'@LB@ ACA UAAAGAAAAG GGUGGU@LB@ ||| :||||||||| :||||:@LB@ UGU GUUUCUUUUC UCACCG@LB@3'-UUU...ACCCC A G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -21.1877 kcal/mol@LB@Unfolding Energy - mRNA 5.32481 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 32 -- 52@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 8 -- 14@LB@ |
