66 |
0.003537 |
0.1858 |
b0411 |
tsx |
-15.28 |
0.023631 |
170 -- 194 |
1 -- 34 |
nucleoside channel receptor of phage T6 and colicin K |
|
_____________169_________________________________195\n_____________|___________________________________|\n5'-AGG...CACUC_______________UU__________________AUACA...ACU-3'\n______________CCGCAA____GGGAU__UCAAA______CAGUGGC\n______________||:|||____||||:__|||||______|||||||\n______________GGUGUU____CCCUG__AGUUU______GUCACCG\n3'-UUU...CCCGA______UUAC_____U______CUUUUC_______-5'\n_____________|__________________________________|\n_____________35_________________________________1\n |
188 -- 194 |
1 -- 7 |
-27.9509 kcal/mol |
8.39787 kcal/mol |
4.26884 kcal/mol |
169 195@LB@ | |@LB@5'-AGG...CACUC UU AUACA...ACU-3'@LB@ CCGCAA GGGAU UCAAA CAGUGGC@LB@ ||:||| ||||: ||||| |||||||@LB@ GGUGUU CCCUG AGUUU GUCACCG@LB@3'-UUU...CCCGA UUAC U CUUUUC -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -27.9509 kcal/mol@LB@Unfolding Energy - mRNA 8.39787 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 170 -- 194@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 1 -- 7@LB@ |
153 |
0.01124 |
0.2504 |
b0414 |
ribD |
-14.78 |
0.031370 |
153 -- 170 |
1 -- 22 |
fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase |
|
_____________152____________________171\n_____________|______________________|\n5'-AAA...UCGAA____________UU________GAAGA...AAG-3'\n______________GAUAUCAAAGAA______UGGC\n______________||:|||||||||______||||\n______________CUGUAGUUUCUU______ACCG\n3'-UUU...UACCC____________UUCGUC____-5'\n_____________|_____________________|\n_____________23____________________1\n |
158 -- 164 |
11 -- 17 |
-19.3666 kcal/mol |
3.04735 kcal/mol |
1.54023 kcal/mol |
152 171@LB@ | |@LB@5'-AAA...UCGAA UU GAAGA...AAG-3'@LB@ GAUAUCAAAGAA UGGC@LB@ ||:||||||||| ||||@LB@ CUGUAGUUUCUU ACCG@LB@3'-UUU...UACCC UUCGUC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -19.3666 kcal/mol@LB@Unfolding Energy - mRNA 3.04735 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 153 -- 170@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 11 -- 17@LB@ |
129 |
0.009293 |
0.2491 |
b0428 |
cyoE |
-12.51 |
0.098557 |
18 -- 26 |
1 -- 9 |
protoheme IX farnesyltransferase |
|
_____________17________27\n_____________|_________|\n5'-GGA...GCAAU_________ACAGG...GCA-3'\n______________GGCAGUGGU\n______________:|||||||:\n______________UCGUCACCG\n3'-UUU...UCUUU_________-5'\n_____________|________|\n_____________10_______1\n |
20 -- 26 |
1 -- 7 |
-15.8954 kcal/mol |
2.13019 kcal/mol |
1.2588 kcal/mol |
17 27@LB@ | |@LB@5'-GGA...GCAAU ACAGG...GCA-3'@LB@ GGCAGUGGU@LB@ :|||||||:@LB@ UCGUCACCG@LB@3'-UUU...UCUUU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.51 kcal/mol@LB@Hybridization Energy -15.8954 kcal/mol@LB@Unfolding Energy - mRNA 2.13019 kcal/mol@LB@Unfolding Energy - sRNA 1.2588 kcal/mol@LB@@LB@Position - mRNA 18 -- 26@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
128 |
0.00928 |
0.2491 |
b0491 |
fetB |
-12.70 |
0.090276 |
178 -- 195 |
1 -- 17 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________177________________196\n_____________|__________________|\n5'-GCC...CAUGC________U____GAA__ACGCU...AGA-3'\n______________CGGAGAAA_GCAG___GC\n______________|::|||||_||||___||\n______________GUUUCUUU_CGUC___CG\n3'-UUU...CUGUA________U____AC___-5'\n_____________|_________________|\n_____________18________________1\n |
179 -- 185 |
10 -- 16 |
-17.1669 kcal/mol |
3.03232 kcal/mol |
1.43853 kcal/mol |
177 196@LB@ | |@LB@5'-GCC...CAUGC U GAA ACGCU...AGA-3'@LB@ CGGAGAAA GCAG GC@LB@ |::||||| |||| ||@LB@ GUUUCUUU CGUC CG@LB@3'-UUU...CUGUA U AC -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.1669 kcal/mol@LB@Unfolding Energy - mRNA 3.03232 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 10 -- 16@LB@ |
96 |
0.005909 |
0.216 |
b0511 |
ybbW |
-13.57 |
0.059054 |
201 -- 236 |
1 -- 27 |
putative allantoin transporter |
|
_____________200___________________________________237\n_____________|_____________________________________|\n5'-UGG...GAUUU____A_____________ACUAUUCC____AC_C___UAUAG...UUA-3'\n______________AUGG__ACAUCAGAGAAA________AGCA__G_GGC\n______________||||__||||||:|||||________||||__|_|||\n______________UACC__UGUAGUUUCUUU________UCGU__C_CCG\n3'-UUU...UGUUU____CC___________________________A___-5'\n_____________|____________________________________|\n_____________28___________________________________1\n |
211 -- 217 |
10 -- 16 |
-23.7564 kcal/mol |
7.66376 kcal/mol |
2.51867 kcal/mol |
200 237@LB@ | |@LB@5'-UGG...GAUUU A ACUAUUCC AC C UAUAG...UUA-3'@LB@ AUGG ACAUCAGAGAAA AGCA G GGC@LB@ |||| ||||||:||||| |||| | |||@LB@ UACC UGUAGUUUCUUU UCGU C CCG@LB@3'-UUU...UGUUU CC A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -23.7564 kcal/mol@LB@Unfolding Energy - mRNA 7.66376 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 201 -- 236@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 10 -- 16@LB@ |
58 |
0.00302 |
0.1789 |
b0556 |
rzpD |
-16.79 |
0.009474 |
64 -- 103 |
3 -- 36 |
DLP12 prophage; putative murein endopeptidase |
|
_____________63_________________________________________104\n_____________|__________________________________________|\n5'-CGC...CGCUU___________AAACCA___C___________C_____U___AUCAG...ACA-3'\n______________CUUCGCAAAAU______GGG_GAUAUCAAAGG___GCA_GUG\n______________||:|:||||||______|||_||:|||||||:___|||_|||\n______________GAGGUGUUUUA______CCC_CUGUAGUUUCU___CGU_CAC\n3'-UUU...UACCC________________________________UUU_______CG-5'\n_____________|__________________________________________|\n_____________37_________________________________________2\n |
89 -- 95 |
12 -- 18 |
-34.1904 kcal/mol |
10.724 kcal/mol |
6.67685 kcal/mol |
63 104@LB@ | |@LB@5'-CGC...CGCUU AAACCA C C U AUCAG...ACA-3'@LB@ CUUCGCAAAAU GGG GAUAUCAAAGG GCA GUG@LB@ ||:|:|||||| ||| ||:|||||||: ||| |||@LB@ GAGGUGUUUUA CCC CUGUAGUUUCU CGU CAC@LB@3'-UUU...UACCC UUU CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -34.1904 kcal/mol@LB@Unfolding Energy - mRNA 10.724 kcal/mol@LB@Unfolding Energy - sRNA 6.67685 kcal/mol@LB@@LB@Position - mRNA 64 -- 103@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 12 -- 18@LB@ |
172 |
0.01269 |
0.2504 |
b0571 |
cusR |
-10.48 |
0.230388 |
14 -- 48 |
1 -- 33 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________13___________________________________49\n_____________|____________________________________|\n5'-AGC...GGCCA__________CA__A___UAC__________UA___UCAUA...GGC-3'\n______________CACAAAAUGG__GA_GUU___AAGGAGA_CA__GGC\n______________||||||||||__||_:|:___|||:|:|_||__|||\n______________GUGUUUUACC__CU_UAG___UUCUUUU_GU__CCG\n3'-UUU...CCGAG__________C___G___U_________C__CA___-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
35 -- 41 |
9 -- 15 |
-22.821 kcal/mol |
9.26274 kcal/mol |
3.07861 kcal/mol |
13 49@LB@ | |@LB@5'-AGC...GGCCA CA A UAC UA UCAUA...GGC-3'@LB@ CACAAAAUGG GA GUU AAGGAGA CA GGC@LB@ |||||||||| || :|: |||:|:| || |||@LB@ GUGUUUUACC CU UAG UUCUUUU GU CCG@LB@3'-UUU...CCGAG C G U C CA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -22.821 kcal/mol@LB@Unfolding Energy - mRNA 9.26274 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 14 -- 48@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
114 |
0.007692 |
0.2368 |
b0584 |
fepA |
-13.71 |
0.055244 |
241 -- 265 |
1 -- 26 |
ferrienterobactin outer membrane transporter |
|
_____________240________________________266\n_____________|__________________________|\n5'-GAA...CAAUC___________U____U____CA___ACAAG...ACG-3'\n______________UGGGGAU_UUA_GGGG_AGCG__GGC\n______________||||||:_|:|_:|::_|||:__|||\n______________ACCCCUG_AGU_UCUU_UCGU__CCG\n3'-UUU...GUUUU_______U___U____U____CA___-5'\n_____________|_________________________|\n_____________27________________________1\n |
241 -- 247 |
20 -- 26 |
-24.8633 kcal/mol |
8.63835 kcal/mol |
2.51842 kcal/mol |
240 266@LB@ | |@LB@5'-GAA...CAAUC U U CA ACAAG...ACG-3'@LB@ UGGGGAU UUA GGGG AGCG GGC@LB@ ||||||: |:| :|:: |||: |||@LB@ ACCCCUG AGU UCUU UCGU CCG@LB@3'-UUU...GUUUU U U U CA -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -24.8633 kcal/mol@LB@Unfolding Energy - mRNA 8.63835 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 241 -- 265@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 20 -- 26@LB@ |
94 |
0.005808 |
0.2147 |
b0652 |
gltL |
-13.33 |
0.066498 |
266 -- 292 |
1 -- 31 |
glutamate/aspartate ABC transporter ATPase |
|
_____________265_____________________________293\n_____________|_______________________________|\n5'-CUC...UCAAC_______AAAA________C___________GGUUUGCG-3'\n______________CGAAGUG________AAGG_GAAGUGGUGGU\n______________|:||:||________||:|_:|||::||||:\n______________GUUUUAC________UUUC_UUUCGUCACCG\n3'-UUU...GAGGU_______CCCUGUAG____U___________-5'\n_____________|______________________________|\n_____________32_____________________________1\n |
286 -- 292 |
1 -- 7 |
-20.9442 kcal/mol |
5.07032 kcal/mol |
2.53929 kcal/mol |
265 293@LB@ | |@LB@5'-CUC...UCAAC AAAA C GGUUUGCG-3'@LB@ CGAAGUG AAGG GAAGUGGUGGU@LB@ |:||:|| ||:| :|||::||||:@LB@ GUUUUAC UUUC UUUCGUCACCG@LB@3'-UUU...GAGGU CCCUGUAG U -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -20.9442 kcal/mol@LB@Unfolding Energy - mRNA 5.07032 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 266 -- 292@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
125 |
0.009022 |
0.2491 |
b0658 |
ybeX |
-16.01 |
0.015431 |
14 -- 34 |
5 -- 21 |
putative ion transport |
|
_____________13____________________35\n_____________|_____________________|\n5'-UUA...CGAUC__________UGAC_______AAGAA...ACC-3'\n______________ACAUCGAAGA____GAAGCAG\n______________|||||:||||____:||||||\n______________UGUAGUUUCU____UUUCGUC\n3'-UUU...ACCCC_____________________ACCG-5'\n_____________|_____________________|\n_____________22____________________4\n |
28 -- 34 |
5 -- 11 |
-20.2475 kcal/mol |
2.73159 kcal/mol |
1.5073 kcal/mol |
13 35@LB@ | |@LB@5'-UUA...CGAUC UGAC AAGAA...ACC-3'@LB@ ACAUCGAAGA GAAGCAG@LB@ |||||:|||| :||||||@LB@ UGUAGUUUCU UUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -16.01 kcal/mol@LB@Hybridization Energy -20.2475 kcal/mol@LB@Unfolding Energy - mRNA 2.73159 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 14 -- 34@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |