69 |
0.003755 |
0.191 |
b0889 |
lrp |
-14.02 |
0.046951 |
165 -- 212 |
1 -- 32 |
leucine-responsive global transcriptional regulator |
|
_____________164______________________________________________213\n_____________|________________________________________________|\n5'-GUG...GUCAG______GUA____AGGAAUA________CAAUAAUAAU_____AUA__AAGAA...AGC-3'\n______________ACAGGA___GGGA_______CAGAGAGA__________GGUAG___GC\n______________|||::|___||||_______||:|||:|__________:|:||___||\n______________UGUUUU___CCCU_______GUUUCUUU__________UCGUC___CG\n3'-UUU...CGAGG______AC_____GUA___________________________AC___-5'\n_____________|_______________________________________________|\n_____________33______________________________________________1\n |
186 -- 192 |
10 -- 16 |
-19.2298 kcal/mol |
2.66644 kcal/mol |
2.53929 kcal/mol |
164 213@LB@ | |@LB@5'-GUG...GUCAG GUA AGGAAUA CAAUAAUAAU AUA AAGAA...AGC-3'@LB@ ACAGGA GGGA CAGAGAGA GGUAG GC@LB@ |||::| |||| ||:|||:| :|:|| ||@LB@ UGUUUU CCCU GUUUCUUU UCGUC CG@LB@3'-UUU...CGAGG AC GUA AC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.02 kcal/mol@LB@Hybridization Energy -19.2298 kcal/mol@LB@Unfolding Energy - mRNA 2.66644 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 165 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 10 -- 16@LB@ |
151 |
0.01116 |
0.2504 |
b0903 |
pflB |
-10.70 |
0.211701 |
140 -- 166 |
4 -- 34 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________139_____________________________167\n_____________|_______________________________|\n5'-CAC...GACCA____U______U__________UAC______AAAUA...ACU-3'\n______________CCAU__AAUGG___UGUCGAAG____GCAGU\n______________|||:__|||||___::||:|||____|||||\n______________GGUG__UUACC___GUAGUUUC____CGUCA\n3'-UUU...CCCGA____UU_____CCU________UUUU_____CCG-5'\n_____________|_______________________________|\n_____________35______________________________3\n |
152 -- 158 |
13 -- 19 |
-21.5315 kcal/mol |
6.56187 kcal/mol |
4.26884 kcal/mol |
139 167@LB@ | |@LB@5'-CAC...GACCA U U UAC AAAUA...ACU-3'@LB@ CCAU AAUGG UGUCGAAG GCAGU@LB@ |||: ||||| ::||:||| |||||@LB@ GGUG UUACC GUAGUUUC CGUCA@LB@3'-UUU...CCCGA UU CCU UUUU CCG-5'@LB@ | |@LB@ 35 3@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -21.5315 kcal/mol@LB@Unfolding Energy - mRNA 6.56187 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 140 -- 166@LB@Position - sRNA 4 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 13 -- 19@LB@ |
189 |
0.01393 |
0.2529 |
b0934 |
ssuC |
-14.25 |
0.041816 |
137 -- 153 |
1 -- 17 |
aliphatic sulfonate ABC transporter permease |
|
_____________136_______________154\n_____________|_________________|\n5'-UGC...AUCCG_____C___________GAAUG...GGC-3'\n______________CAAGG_GAAGCGGUGGC\n______________|||:|_:||||:|||||\n______________GUUUC_UUUCGUCACCG\n3'-UUU...CUGUA_____U___________-5'\n_____________|________________|\n_____________18_______________1\n |
147 -- 153 |
1 -- 7 |
-24.8998 kcal/mol |
9.21593 kcal/mol |
1.43853 kcal/mol |
136 154@LB@ | |@LB@5'-UGC...AUCCG C GAAUG...GGC-3'@LB@ CAAGG GAAGCGGUGGC@LB@ |||:| :||||:|||||@LB@ GUUUC UUUCGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -24.8998 kcal/mol@LB@Unfolding Energy - mRNA 9.21593 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 137 -- 153@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 1 -- 7@LB@ |
194 |
0.01408 |
0.2529 |
b0952 |
pqiC |
-11.52 |
0.151794 |
181 -- 195 |
48 -- 61 |
DUF330 family putative lipoprotein |
|
_____________180_____________196\n_____________|_______________|\n5'-ACG...AUCCA_________AG____AAACA...GCG-3'\n______________GAGCCGAAG__GGCG\n______________||:|||||:__||||\n______________CUUGGCUUU__CCGC\n3'-UUU...UGGAA_________A_____CCCAA...CCG-5'\n_____________|_______________|\n_____________62______________47\n |
183 -- 189 |
53 -- 59 |
-21.1549 kcal/mol |
5.66908 kcal/mol |
3.96136 kcal/mol |
180 196@LB@ | |@LB@5'-ACG...AUCCA AG AAACA...GCG-3'@LB@ GAGCCGAAG GGCG@LB@ ||:|||||: ||||@LB@ CUUGGCUUU CCGC@LB@3'-UUU...UGGAA A CCCAA...CCG-5'@LB@ | |@LB@ 62 47@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -21.1549 kcal/mol@LB@Unfolding Energy - mRNA 5.66908 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 181 -- 195@LB@Position - sRNA 48 -- 61@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 53 -- 59@LB@ |
137 |
0.0102 |
0.2504 |
b0957 |
ompA |
-10.25 |
0.250752 |
198 -- 232 |
1 -- 30 |
outer membrane protein A (3a;II*;G;d) |
|
_____________197_________________________________233\n_____________|___________________________________|\n5'-CUU...CGCAA______AAAAA____GCUAUCGC__UU________ACUGG...AAC-3'\n______________AAAAUG_____GACA________GA__GCAGUGGC\n______________||||||_____||||________:|__||||||||\n______________UUUUAC_____CUGU________UU__CGUCACCG\n3'-UUU...AGGUG______CC_______AGUUUC____UU________-5'\n_____________|__________________________________|\n_____________31_________________________________1\n |
226 -- 232 |
1 -- 7 |
-21.624 kcal/mol |
8.85247 kcal/mol |
2.51911 kcal/mol |
197 233@LB@ | |@LB@5'-CUU...CGCAA AAAAA GCUAUCGC UU ACUGG...AAC-3'@LB@ AAAAUG GACA GA GCAGUGGC@LB@ |||||| |||| :| ||||||||@LB@ UUUUAC CUGU UU CGUCACCG@LB@3'-UUU...AGGUG CC AGUUUC UU -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.624 kcal/mol@LB@Unfolding Energy - mRNA 8.85247 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 232@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 1 -- 7@LB@ |
42 |
0.002133 |
0.1648 |
b0968 |
yccX |
-12.44 |
0.101807 |
184 -- 198 |
5 -- 23 |
weak acylphosphatase |
|
_____________183_________________199\n_____________|___________________|\n5'-GGC...AUUAA___________________CAAUG...CCG-3'\n______________GGAUA____AGGAGAGCAG\n______________|||:|____||:|:|||||\n______________CCUGU____UCUUUUCGUC\n3'-UUU...UUACC_____AGUU__________ACCG-5'\n_____________|___________________|\n_____________24__________________4\n |
192 -- 198 |
5 -- 11 |
-17.1825 kcal/mol |
3.17176 kcal/mol |
1.57523 kcal/mol |
183 199@LB@ | |@LB@5'-GGC...AUUAA CAAUG...CCG-3'@LB@ GGAUA AGGAGAGCAG@LB@ |||:| ||:|:|||||@LB@ CCUGU UCUUUUCGUC@LB@3'-UUU...UUACC AGUU ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -17.1825 kcal/mol@LB@Unfolding Energy - mRNA 3.17176 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 184 -- 198@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
41 |
0.002071 |
0.1648 |
b0992 |
yccM |
-9.88 |
0.287125 |
161 -- 167 |
1 -- 7 |
putative 4Fe-4S membrane protein |
|
_____________160_____168\n_____________|_______|\n5'-AUC...UAGAA_______AUUUG...AAG-3'\n______________UAGUGGC\n______________:||||||\n______________GUCACCG\n3'-UUU...UUUUC_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-11.7646 kcal/mol |
0.660682 kcal/mol |
1.22779 kcal/mol |
160 168@LB@ | |@LB@5'-AUC...UAGAA AUUUG...AAG-3'@LB@ UAGUGGC@LB@ :||||||@LB@ GUCACCG@LB@3'-UUU...UUUUC -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -11.7646 kcal/mol@LB@Unfolding Energy - mRNA 0.660682 kcal/mol@LB@Unfolding Energy - sRNA 1.22779 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
143 |
0.01049 |
0.2504 |
b1004 |
wrbA |
-9.61 |
0.314473 |
272 -- 293 |
1 -- 25 |
NAD(P)H:quinone oxidoreductase |
|
_____________271________________________294\n_____________|__________________________|\n5'-UUA...GCUGA___U_________C_______A____GCUGAAG-3'\n______________GGG_GCA____AG_AAAGUGG_UGGC\n______________|||_:||____||_||||::|_||||\n______________CCC_UGU____UC_UUUCGUC_ACCG\n3'-UUU...UUUUA___C___AGUU__U____________-5'\n_____________|_________________________|\n_____________26________________________1\n |
282 -- 288 |
5 -- 11 |
-20.1219 kcal/mol |
7.99134 kcal/mol |
2.51748 kcal/mol |
271 294@LB@ | |@LB@5'-UUA...GCUGA U C A GCUGAAG-3'@LB@ GGG GCA AG AAAGUGG UGGC@LB@ ||| :|| || ||||::| ||||@LB@ CCC UGU UC UUUCGUC ACCG@LB@3'-UUU...UUUUA C AGUU U -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -20.1219 kcal/mol@LB@Unfolding Energy - mRNA 7.99134 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 5 -- 11@LB@ |
167 |
0.01216 |
0.2504 |
b1013 |
rutR |
-12.90 |
0.082087 |
181 -- 218 |
3 -- 35 |
rut operon transcriptional repressor for |
b0796 |
_____________180________________________________________219\n_____________|__________________________________________|\n5'-CAA...GCCAA_______________GAGCGCAUGACG_____C_________AAAAC...AAU-3'\n______________UCUACAAGA_GGGGA____________CAAGG____GCAGUG\n______________||:||||:|_|||||____________|||:|____||||||\n______________AGGUGUUUU_CCCCU____________GUUUC____CGUCAC\n3'-UUU...ACCCG_________A_____GUA______________UUUU______CG-5'\n_____________|__________________________________________|\n_____________36_________________________________________2\n |
181 -- 187 |
29 -- 35 |
-29.1146 kcal/mol |
11.1798 kcal/mol |
5.03644 kcal/mol |
180 219@LB@ | |@LB@5'-CAA...GCCAA GAGCGCAUGACG C AAAAC...AAU-3'@LB@ UCUACAAGA GGGGA CAAGG GCAGUG@LB@ ||:||||:| ||||| |||:| ||||||@LB@ AGGUGUUUU CCCCU GUUUC CGUCAC@LB@3'-UUU...ACCCG A GUA UUUU CG-5'@LB@ | |@LB@ 36 2@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -29.1146 kcal/mol@LB@Unfolding Energy - mRNA 11.1798 kcal/mol@LB@Unfolding Energy - sRNA 5.03644 kcal/mol@LB@@LB@Position - mRNA 181 -- 218@LB@Position - sRNA 3 -- 35@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 29 -- 35@LB@ |
10 |
0.0003274 |
0.1087 |
b1020 |
phoH |
-9.93 |
0.281763 |
74 -- 85 |
48 -- 59 |
ATP-binding protein; putative PhoH family P-loop ATPase |
|
_____________73___________86\n_____________|____________|\n5'-AAU...AUGUC____________UUUUA...AAC-3'\n______________ACUGAAAUGGUG\n______________||:|||||||:|\n______________UGGCUUUACCGC\n3'-UUU...GAACU____________CCCAA...CCG-5'\n_____________|____________|\n_____________60___________47\n |
79 -- 85 |
48 -- 54 |
-17.134 kcal/mol |
3.24305 kcal/mol |
3.96136 kcal/mol |
73 86@LB@ | |@LB@5'-AAU...AUGUC UUUUA...AAC-3'@LB@ ACUGAAAUGGUG@LB@ ||:|||||||:|@LB@ UGGCUUUACCGC@LB@3'-UUU...GAACU CCCAA...CCG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -17.134 kcal/mol@LB@Unfolding Energy - mRNA 3.24305 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 74 -- 85@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 48 -- 54@LB@ |