86 |
0.005461 |
0.2147 |
b0002 |
thrA |
-11.41 |
0.159352 |
219 -- 235 |
1 -- 25 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________218_________________________236\n_____________|___________________________|\n5'-CCA...AGUUC__C__U_____________________AAAUG...UGG-3'\n______________GG_GG_ACAU__________CAGUGGC\n______________||_||_||||__________|||||||\n______________CC_CC_UGUA__________GUCACCG\n3'-UUU...UUUUA__________GUUUCUUUUC_______-5'\n_____________|__________________________|\n_____________26_________________________1\n |
229 -- 235 |
1 -- 7 |
-18.4664 kcal/mol |
4.54068 kcal/mol |
2.51748 kcal/mol |
218 236@LB@ | |@LB@5'-CCA...AGUUC C U AAAUG...UGG-3'@LB@ GG GG ACAU CAGUGGC@LB@ || || |||| |||||||@LB@ CC CC UGUA GUCACCG@LB@3'-UUU...UUUUA GUUUCUUUUC -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -18.4664 kcal/mol@LB@Unfolding Energy - mRNA 4.54068 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 219 -- 235@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
116 |
0.007938 |
0.2401 |
b0008 |
talB |
-12.38 |
0.104625 |
254 -- 276 |
7 -- 26 |
transaldolase B |
|
_____________253_____________________277\n_____________|_______________________|\n5'-AGG...GACAC___________C__CAAU_____UGUAU...CAA-3'\n______________UGGGGACAUCG_GG____GAAGC\n______________||||||||||:_:|____:||||\n______________ACCCCUGUAGU_UC____UUUCG\n3'-UUU...GUUUU___________U__U________UCACCG-5'\n_____________|_______________________|\n_____________27______________________6\n |
258 -- 264 |
16 -- 22 |
-23.5048 kcal/mol |
10.4229 kcal/mol |
0.706388 kcal/mol |
253 277@LB@ | |@LB@5'-AGG...GACAC C CAAU UGUAU...CAA-3'@LB@ UGGGGACAUCG GG GAAGC@LB@ ||||||||||: :| :||||@LB@ ACCCCUGUAGU UC UUUCG@LB@3'-UUU...GUUUU U U UCACCG-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -23.5048 kcal/mol@LB@Unfolding Energy - mRNA 10.4229 kcal/mol@LB@Unfolding Energy - sRNA 0.706388 kcal/mol@LB@@LB@Position - mRNA 254 -- 276@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 16 -- 22@LB@ |
53 |
0.002642 |
0.1735 |
b0055 |
djlA |
-12.56 |
0.096184 |
186 -- 227 |
1 -- 31 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________185________________________________________228\n_____________|__________________________________________|\n5'-GAC...UGUGU___UU______AUAUAUGCAG____________AU__U____GUGGC...UUG-3'\n______________CGA__UGGGGA__________UAUUGGGGAAAA__CA_UGGC\n______________|:|__||||||__________:||::::|||||__||_||||\n______________GUU__ACCCCU__________GUAGUUUCUUUU__GU_ACCG\n3'-UUU...GAGGU___UU____________________________C___C____-5'\n_____________|_________________________________________|\n_____________32________________________________________1\n |
212 -- 218 |
9 -- 15 |
-25.7115 kcal/mol |
10.6128 kcal/mol |
2.53929 kcal/mol |
185 228@LB@ | |@LB@5'-GAC...UGUGU UU AUAUAUGCAG AU U GUGGC...UUG-3'@LB@ CGA UGGGGA UAUUGGGGAAAA CA UGGC@LB@ |:| |||||| :||::::||||| || ||||@LB@ GUU ACCCCU GUAGUUUCUUUU GU ACCG@LB@3'-UUU...GAGGU UU C C -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -25.7115 kcal/mol@LB@Unfolding Energy - mRNA 10.6128 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 186 -- 227@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 9 -- 15@LB@ |
160 |
0.0118 |
0.2504 |
b0078 |
ilvH |
-13.58 |
0.059018 |
151 -- 175 |
1 -- 25 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________150_______________________176\n_____________|_________________________|\n5'-GCC...UUCGC_______GAAU___UGAAAU_____UAAGC...UGA-3'\n______________GGGGGCG____GGA______GUGGU\n______________||||:|:____:||______||||:\n______________CCCCUGU____UCU______CACCG\n3'-UUU...UUUUA_______AGUU___UUUCGU_____-5'\n_____________|________________________|\n_____________26_______________________1\n |
151 -- 157 |
19 -- 25 |
-21.9405 kcal/mol |
5.84786 kcal/mol |
2.51748 kcal/mol |
150 176@LB@ | |@LB@5'-GCC...UUCGC GAAU UGAAAU UAAGC...UGA-3'@LB@ GGGGGCG GGA GUGGU@LB@ ||||:|: :|| ||||:@LB@ CCCCUGU UCU CACCG@LB@3'-UUU...UUUUA AGUU UUUCGU -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -21.9405 kcal/mol@LB@Unfolding Energy - mRNA 5.84786 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 151 -- 175@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 19 -- 25@LB@ |
3 |
3.973e-07 |
0.0004647 |
b0081 |
mraZ |
-16.47 |
0.011640 |
172 -- 200 |
1 -- 32 |
RsmH methytransferase inhibitor |
|
_____________171______________________________201\n_____________|________________________________|\n5'-GAU...GUGGG__________A___A_____U___________AUGUU...AAA-3'\n______________GCAAAGUGGG_AUA__GGGG_GAGGC__UGGC\n______________:||||:||||_|:|__:::|_:|:||__||||\n______________UGUUUUACCC_UGU__UUUC_UUUCG__ACCG\n3'-UUU...CGAGG__________C___AG____U_____UC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
175 -- 181 |
23 -- 29 |
-28.2943 kcal/mol |
9.28897 kcal/mol |
2.53929 kcal/mol |
171 201@LB@ | |@LB@5'-GAU...GUGGG A A U AUGUU...AAA-3'@LB@ GCAAAGUGGG AUA GGGG GAGGC UGGC@LB@ :||||:|||| |:| :::| :|:|| ||||@LB@ UGUUUUACCC UGU UUUC UUUCG ACCG@LB@3'-UUU...CGAGG C AG U UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -16.47 kcal/mol@LB@Hybridization Energy -28.2943 kcal/mol@LB@Unfolding Energy - mRNA 9.28897 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 172 -- 200@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 23 -- 29@LB@ |
148 |
0.01095 |
0.2504 |
b0082 |
rsmH |
-17.59 |
0.005541 |
130 -- 156 |
1 -- 25 |
16S rRNA m(4)C1402 methyltransferase SAM-dependent |
|
_____________129_________________________157\n_____________|___________________________|\n5'-UGG...GUCAA__AA________C_C________U___UACCG...GUC-3'\n______________GG__GAUAUCGA_G_AGAGCAGU_GGC\n______________||__||:|||:|_|_|:||||||_|||\n______________CC__CUGUAGUU_C_UUUCGUCA_CCG\n3'-UUU...UUUUA__C_________U_U____________-5'\n_____________|__________________________|\n_____________26_________________________1\n |
146 -- 152 |
4 -- 10 |
-26.6505 kcal/mol |
6.5392 kcal/mol |
2.51748 kcal/mol |
129 157@LB@ | |@LB@5'-UGG...GUCAA AA C C U UACCG...GUC-3'@LB@ GG GAUAUCGA G AGAGCAGU GGC@LB@ || ||:|||:| | |:|||||| |||@LB@ CC CUGUAGUU C UUUCGUCA CCG@LB@3'-UUU...UUUUA C U U -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -17.59 kcal/mol@LB@Hybridization Energy -26.6505 kcal/mol@LB@Unfolding Energy - mRNA 6.5392 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 130 -- 156@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 4 -- 10@LB@ |
87 |
0.005508 |
0.2147 |
b0083 |
ftsL |
-13.20 |
0.070894 |
129 -- 146 |
1 -- 23 |
membrane bound cell division leucine zipper septum protein |
|
_____________128_____________________147\n_____________|_______________________|\n5'-CGU...AUGCC_______________________UGAGA...UGC-3'\n______________GGGC___GAAGAAGAG__GUGGC\n______________||:|___:|||||:||__|||||\n______________CCUG___UUUCUUUUC__CACCG\n3'-UUU...UUACC____UAG_________GU_____-5'\n_____________|______________________|\n_____________24_____________________1\n |
135 -- 141 |
8 -- 14 |
-20.4792 kcal/mol |
5.69631 kcal/mol |
1.57928 kcal/mol |
128 147@LB@ | |@LB@5'-CGU...AUGCC UGAGA...UGC-3'@LB@ GGGC GAAGAAGAG GUGGC@LB@ ||:| :|||||:|| |||||@LB@ CCUG UUUCUUUUC CACCG@LB@3'-UUU...UUACC UAG GU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.20 kcal/mol@LB@Hybridization Energy -20.4792 kcal/mol@LB@Unfolding Energy - mRNA 5.69631 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 129 -- 146@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 8 -- 14@LB@ |
186 |
0.01333 |
0.2514 |
b0084 |
ftsI |
-11.80 |
0.135121 |
196 -- 214 |
1 -- 22 |
transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3 |
|
_____________195____________________215\n_____________|______________________|\n5'-GUU...AACGC_______U__________C___GAAAA...UGG-3'\n______________GACG_CA___GAAAGCAG_GGC\n______________|||:_||___:|||||||_|||\n______________CUGU_GU___UUUUCGUC_CCG\n3'-UUU...UACCC____A__UUC________A___-5'\n_____________|_____________________|\n_____________23____________________1\n |
204 -- 210 |
5 -- 11 |
-21.3841 kcal/mol |
8.04628 kcal/mol |
1.54023 kcal/mol |
195 215@LB@ | |@LB@5'-GUU...AACGC U C GAAAA...UGG-3'@LB@ GACG CA GAAAGCAG GGC@LB@ |||: || :||||||| |||@LB@ CUGU GU UUUUCGUC CCG@LB@3'-UUU...UACCC A UUC A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -21.3841 kcal/mol@LB@Unfolding Energy - mRNA 8.04628 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 196 -- 214@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 5 -- 11@LB@ |
107 |
0.007146 |
0.2343 |
b0085 |
murE |
-14.50 |
0.036427 |
193 -- 205 |
1 -- 25 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________192_______________________206\n_____________|_________________________|\n5'-UGC...GGCGA_________________________AGAUC...CGG-3'\n______________GGGGACA____________GGUGGC\n______________|||||||____________:|||||\n______________CCCCUGU____________UCACCG\n3'-UUU...UUUUA_______AGUUUCUUUUCG______-5'\n_____________|________________________|\n_____________26_______________________1\n |
193 -- 199 |
19 -- 25 |
-21.3886 kcal/mol |
4.36682 kcal/mol |
2.51748 kcal/mol |
192 206@LB@ | |@LB@5'-UGC...GGCGA AGAUC...CGG-3'@LB@ GGGGACA GGUGGC@LB@ ||||||| :|||||@LB@ CCCCUGU UCACCG@LB@3'-UUU...UUUUA AGUUUCUUUUCG -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -21.3886 kcal/mol@LB@Unfolding Energy - mRNA 4.36682 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 19 -- 25@LB@ |
161 |
0.01187 |
0.2504 |
b0093 |
ftsQ |
-14.15 |
0.043981 |
32 -- 43 |
18 -- 29 |
divisome assembly protein membrane anchored protein involved in growth of wall at septum |
|
_____________31___________44\n_____________|____________|\n5'-GCU...GCAAA____________AUUGA...CCG-3'\n______________GGAUGGGGACGU\n______________::||||||||:|\n______________UUUACCCCUGUA\n3'-UUU...GGUGU____________GUUUC...CCG-5'\n_____________|____________|\n_____________30___________17\n |
37 -- 43 |
18 -- 24 |
-18.9266 kcal/mol |
4.11166 kcal/mol |
0.665542 kcal/mol |
31 44@LB@ | |@LB@5'-GCU...GCAAA AUUGA...CCG-3'@LB@ GGAUGGGGACGU@LB@ ::||||||||:|@LB@ UUUACCCCUGUA@LB@3'-UUU...GGUGU GUUUC...CCG-5'@LB@ | |@LB@ 30 17@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -18.9266 kcal/mol@LB@Unfolding Energy - mRNA 4.11166 kcal/mol@LB@Unfolding Energy - sRNA 0.665542 kcal/mol@LB@@LB@Position - mRNA 32 -- 43@LB@Position - sRNA 18 -- 29@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 18 -- 24@LB@ |
111 |
0.007434 |
0.2348 |
b0103 |
coaE |
-19.66 |
0.001155 |
224 -- 242 |
1 -- 25 |
dephospho-CoA kinase |
|
_____________223________________________243\n_____________|__________________________|\n5'-UAU...UUAAC___A______________________AAGAG...AUA-3'\n______________GGG_GGCAUU_______GGCAGUGGC\n______________|||_|:|||:_______:||||||||\n______________CCC_CUGUAG_______UCGUCACCG\n3'-UUU...UUUUA__________UUUCUUU_________-5'\n_____________|_________________________|\n_____________26________________________1\n |
236 -- 242 |
1 -- 7 |
-28.3462 kcal/mol |
6.16994 kcal/mol |
2.51748 kcal/mol |
223 243@LB@ | |@LB@5'-UAU...UUAAC A AAGAG...AUA-3'@LB@ GGG GGCAUU GGCAGUGGC@LB@ ||| |:|||: :||||||||@LB@ CCC CUGUAG UCGUCACCG@LB@3'-UUU...UUUUA UUUCUUU -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -19.66 kcal/mol@LB@Hybridization Energy -28.3462 kcal/mol@LB@Unfolding Energy - mRNA 6.16994 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 224 -- 242@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
81 |
0.004938 |
0.2139 |
b0115 |
aceF |
-13.95 |
0.048783 |
266 -- 289 |
7 -- 31 |
pyruvate dehydrogenase dihydrolipoyltransacetylase component E2 |
|
_____________265_________________________290\n_____________|___________________________|\n5'-GAU...CUGGU_________C__________UU_____CGAAC...CGC-3'\n______________CAAAGUGGG_GACA___AAG__GAAGC\n______________||||:||||_||||___|||__:||||\n______________GUUUUACCC_CUGU___UUC__UUUCG\n3'-UUU...GAGGU______________AGU___U______UCACCG-5'\n_____________|___________________________|\n_____________32__________________________6\n |
268 -- 274 |
23 -- 29 |
-21.1287 kcal/mol |
4.65658 kcal/mol |
2.52208 kcal/mol |
265 290@LB@ | |@LB@5'-GAU...CUGGU C UU CGAAC...CGC-3'@LB@ CAAAGUGGG GACA AAG GAAGC@LB@ ||||:|||| |||| ||| :||||@LB@ GUUUUACCC CUGU UUC UUUCG@LB@3'-UUU...GAGGU AGU U UCACCG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -21.1287 kcal/mol@LB@Unfolding Energy - mRNA 4.65658 kcal/mol@LB@Unfolding Energy - sRNA 2.52208 kcal/mol@LB@@LB@Position - mRNA 266 -- 289@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 23 -- 29@LB@ |
119 |
0.008338 |
0.2459 |
b0123 |
cueO |
-14.31 |
0.040489 |
47 -- 61 |
9 -- 24 |
multicopper oxidase (laccase) |
|
_____________46_______________62\n_____________|________________|\n5'-CUG...UACCA________________UAAAC...CGU-3'\n______________GGGGC_UUAAAGAAGA\n______________|||:|_|:||||||:|\n______________CCCUG_AGUUUCUUUU\n3'-UUU...UUUAC_____U__________CGUCACCG-5'\n_____________|________________|\n_____________25_______________8\n |
55 -- 61 |
9 -- 15 |
-17.0719 kcal/mol |
2.10565 kcal/mol |
0.659805 kcal/mol |
46 62@LB@ | |@LB@5'-CUG...UACCA UAAAC...CGU-3'@LB@ GGGGC UUAAAGAAGA@LB@ |||:| |:||||||:|@LB@ CCCUG AGUUUCUUUU@LB@3'-UUU...UUUAC U CGUCACCG-5'@LB@ | |@LB@ 25 8@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -17.0719 kcal/mol@LB@Unfolding Energy - mRNA 2.10565 kcal/mol@LB@Unfolding Energy - sRNA 0.659805 kcal/mol@LB@@LB@Position - mRNA 47 -- 61@LB@Position - sRNA 9 -- 24@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 9 -- 15@LB@ |
124 |
0.008958 |
0.2491 |
b0124 |
gcd |
-13.85 |
0.051383 |
179 -- 193 |
48 -- 62 |
glucose dehydrogenase |
|
_____________178_____________194\n_____________|_______________|\n5'-UAA...AUUAA_______________UCUCU...GGC-3'\n______________UGAAUUGAAAUGGUG\n______________||||::|||||||:|\n______________ACUUGGCUUUACCGC\n3'-UUU...UUGGA_______________CCCAA...CCG-5'\n_____________|_______________|\n_____________63______________47\n |
187 -- 193 |
48 -- 54 |
-20.4838 kcal/mol |
2.67361 kcal/mol |
3.96136 kcal/mol |
178 194@LB@ | |@LB@5'-UAA...AUUAA UCUCU...GGC-3'@LB@ UGAAUUGAAAUGGUG@LB@ ||||::|||||||:|@LB@ ACUUGGCUUUACCGC@LB@3'-UUU...UUGGA CCCAA...CCG-5'@LB@ | |@LB@ 63 47@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -20.4838 kcal/mol@LB@Unfolding Energy - mRNA 2.67361 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 179 -- 193@LB@Position - sRNA 48 -- 62@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 48 -- 54@LB@ |
54 |
0.00267 |
0.1735 |
b0131 |
panD |
-12.96 |
0.079905 |
178 -- 195 |
5 -- 22 |
aspartate 1-decarboxylase |
|
_____________177________________196\n_____________|__________________|\n5'-AUU...UUAAC____GGGU__________AAGUU...UUG-3'\n______________GACA____AGAAAGGUAG\n______________||||____|||||:|:||\n______________CUGU____UCUUUUCGUC\n3'-UUU...UACCC____AGUU__________ACCG-5'\n_____________|__________________|\n_____________23_________________4\n |
189 -- 195 |
5 -- 11 |
-16.4376 kcal/mol |
1.9462 kcal/mol |
1.53637 kcal/mol |
177 196@LB@ | |@LB@5'-AUU...UUAAC GGGU AAGUU...UUG-3'@LB@ GACA AGAAAGGUAG@LB@ |||| |||||:|:||@LB@ CUGU UCUUUUCGUC@LB@3'-UUU...UACCC AGUU ACCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -16.4376 kcal/mol@LB@Unfolding Energy - mRNA 1.9462 kcal/mol@LB@Unfolding Energy - sRNA 1.53637 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 5 -- 11@LB@ |
15 |
0.0006403 |
0.1243 |
b0178 |
skp |
-17.37 |
0.006465 |
90 -- 106 |
1 -- 17 |
periplasmic chaperone |
|
_____________89________________107\n_____________|_________________|\n5'-CUC...CUCCA________U________AGUGU...UCC-3'\n______________CAAAGGAA_GUAGUGGU\n______________|||||:||_|:|||||:\n______________GUUUCUUU_CGUCACCG\n3'-UUU...CUGUA________U________-5'\n_____________|________________|\n_____________18_______________1\n |
100 -- 106 |
1 -- 7 |
-21.6829 kcal/mol |
2.87621 kcal/mol |
1.43853 kcal/mol |
89 107@LB@ | |@LB@5'-CUC...CUCCA U AGUGU...UCC-3'@LB@ CAAAGGAA GUAGUGGU@LB@ |||||:|| |:|||||:@LB@ GUUUCUUU CGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -17.37 kcal/mol@LB@Hybridization Energy -21.6829 kcal/mol@LB@Unfolding Energy - mRNA 2.87621 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 90 -- 106@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 1 -- 7@LB@ |
156 |
0.01139 |
0.2504 |
b0197 |
metQ |
-9.46 |
0.330846 |
169 -- 205 |
1 -- 33 |
DL-methionine transporter subunit |
|
_____________168_____________________________________206\n_____________|_______________________________________|\n5'-GUG...UUCAA_____CAUAAAUA___________GAAUAA_________GUUCA...UUA-3'\n______________CACAA_________AUUGAAGAAG______GGUA_UGGC\n______________|||||_________||::|||||:______:|:|_||||\n______________GUGUU_________UAGUUUCUUU______UCGU_ACCG\n3'-UUU...CCGAG_____UUACCCCUG____________________C____-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
185 -- 191 |
10 -- 16 |
-16.9822 kcal/mol |
4.44131 kcal/mol |
3.07861 kcal/mol |
168 206@LB@ | |@LB@5'-GUG...UUCAA CAUAAAUA GAAUAA GUUCA...UUA-3'@LB@ CACAA AUUGAAGAAG GGUA UGGC@LB@ ||||| ||::|||||: :|:| ||||@LB@ GUGUU UAGUUUCUUU UCGU ACCG@LB@3'-UUU...CCGAG UUACCCCUG C -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.46 kcal/mol@LB@Hybridization Energy -16.9822 kcal/mol@LB@Unfolding Energy - mRNA 4.44131 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 169 -- 205@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 10 -- 16@LB@ |
61 |
0.00311 |
0.1789 |
b0224 |
yafK |
-14.83 |
0.030578 |
183 -- 204 |
1 -- 20 |
L D-transpeptidase-related protein |
|
_____________182____________________205\n_____________|______________________|\n5'-UUA...CGUUU__________U_______AU__GUAAA...AAG-3'\n______________UAUCAAGGAA_AAGCAGU__GC\n______________:|||||:|||_|||||||__||\n______________GUAGUUUCUU_UUCGUCA__CG\n3'-UUU...CCCCU__________________C___-5'\n_____________|_____________________|\n_____________21____________________1\n |
194 -- 200 |
4 -- 10 |
-21.3079 kcal/mol |
5.02402 kcal/mol |
1.45855 kcal/mol |
182 205@LB@ | |@LB@5'-UUA...CGUUU U AU GUAAA...AAG-3'@LB@ UAUCAAGGAA AAGCAGU GC@LB@ :|||||:||| ||||||| ||@LB@ GUAGUUUCUU UUCGUCA CG@LB@3'-UUU...CCCCU C -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -21.3079 kcal/mol@LB@Unfolding Energy - mRNA 5.02402 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 183 -- 204@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 4 -- 10@LB@ |
126 |
0.009112 |
0.2491 |
b0299 |
insF1 |
-12.99 |
0.078544 |
136 -- 158 |
1 -- 32 |
IS3 transposase B |
b0372 b0541 b1026 b2089 b3558 |
_____________135______________________________159\n_____________|________________________________|\n5'-ACU...AGCUG______C_________________________UAUCC...GUC-3'\n______________GCAGAA__GGGAU______GAAGAGC__UGGC\n______________:||:||__||||:______|||:|||__||||\n______________UGUUUU__CCCUG______CUUUUCG__ACCG\n3'-UUU...CGAGG______AC_____UAGUUU_______UC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
148 -- 154 |
7 -- 13 |
-22.7833 kcal/mol |
7.25293 kcal/mol |
2.53929 kcal/mol |
135 159@LB@ | |@LB@5'-ACU...AGCUG C UAUCC...GUC-3'@LB@ GCAGAA GGGAU GAAGAGC UGGC@LB@ :||:|| ||||: |||:||| ||||@LB@ UGUUUU CCCUG CUUUUCG ACCG@LB@3'-UUU...CGAGG AC UAGUUU UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -22.7833 kcal/mol@LB@Unfolding Energy - mRNA 7.25293 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 7 -- 13@LB@ |
200 |
0.01506 |
0.259 |
b0404 |
acpH |
-14.03 |
0.046767 |
57 -- 80 |
6 -- 28 |
acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase |
|
_____________56________________________81\n_____________|_________________________|\n5'-GCC...GGGAU______CA_________UUC_____AUUCA...GUU-3'\n______________AGUGGG___AUCAGGGA___GGGCA\n______________|:||||___||||::||___::|||\n______________UUACCC___UAGUUUCU___UUCGU\n3'-UUU...GUGUU______CUG________U_______CACCG-5'\n_____________|_________________________|\n_____________29________________________5\n |
66 -- 72 |
12 -- 18 |
-19.5231 kcal/mol |
4.78501 kcal/mol |
0.706454 kcal/mol |
56 81@LB@ | |@LB@5'-GCC...GGGAU CA UUC AUUCA...GUU-3'@LB@ AGUGGG AUCAGGGA GGGCA@LB@ |:|||| ||||::|| ::|||@LB@ UUACCC UAGUUUCU UUCGU@LB@3'-UUU...GUGUU CUG U CACCG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -19.5231 kcal/mol@LB@Unfolding Energy - mRNA 4.78501 kcal/mol@LB@Unfolding Energy - sRNA 0.706454 kcal/mol@LB@@LB@Position - mRNA 57 -- 80@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 12 -- 18@LB@ |
66 |
0.003537 |
0.1858 |
b0411 |
tsx |
-15.28 |
0.023631 |
170 -- 194 |
1 -- 34 |
nucleoside channel receptor of phage T6 and colicin K |
|
_____________169_________________________________195\n_____________|___________________________________|\n5'-AGG...CACUC_______________UU__________________AUACA...ACU-3'\n______________CCGCAA____GGGAU__UCAAA______CAGUGGC\n______________||:|||____||||:__|||||______|||||||\n______________GGUGUU____CCCUG__AGUUU______GUCACCG\n3'-UUU...CCCGA______UUAC_____U______CUUUUC_______-5'\n_____________|__________________________________|\n_____________35_________________________________1\n |
188 -- 194 |
1 -- 7 |
-27.9509 kcal/mol |
8.39787 kcal/mol |
4.26884 kcal/mol |
169 195@LB@ | |@LB@5'-AGG...CACUC UU AUACA...ACU-3'@LB@ CCGCAA GGGAU UCAAA CAGUGGC@LB@ ||:||| ||||: ||||| |||||||@LB@ GGUGUU CCCUG AGUUU GUCACCG@LB@3'-UUU...CCCGA UUAC U CUUUUC -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -27.9509 kcal/mol@LB@Unfolding Energy - mRNA 8.39787 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 170 -- 194@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 1 -- 7@LB@ |
153 |
0.01124 |
0.2504 |
b0414 |
ribD |
-14.78 |
0.031370 |
153 -- 170 |
1 -- 22 |
fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase |
|
_____________152____________________171\n_____________|______________________|\n5'-AAA...UCGAA____________UU________GAAGA...AAG-3'\n______________GAUAUCAAAGAA______UGGC\n______________||:|||||||||______||||\n______________CUGUAGUUUCUU______ACCG\n3'-UUU...UACCC____________UUCGUC____-5'\n_____________|_____________________|\n_____________23____________________1\n |
158 -- 164 |
11 -- 17 |
-19.3666 kcal/mol |
3.04735 kcal/mol |
1.54023 kcal/mol |
152 171@LB@ | |@LB@5'-AAA...UCGAA UU GAAGA...AAG-3'@LB@ GAUAUCAAAGAA UGGC@LB@ ||:||||||||| ||||@LB@ CUGUAGUUUCUU ACCG@LB@3'-UUU...UACCC UUCGUC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -19.3666 kcal/mol@LB@Unfolding Energy - mRNA 3.04735 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 153 -- 170@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 11 -- 17@LB@ |
129 |
0.009293 |
0.2491 |
b0428 |
cyoE |
-12.51 |
0.098557 |
18 -- 26 |
1 -- 9 |
protoheme IX farnesyltransferase |
|
_____________17________27\n_____________|_________|\n5'-GGA...GCAAU_________ACAGG...GCA-3'\n______________GGCAGUGGU\n______________:|||||||:\n______________UCGUCACCG\n3'-UUU...UCUUU_________-5'\n_____________|________|\n_____________10_______1\n |
20 -- 26 |
1 -- 7 |
-15.8954 kcal/mol |
2.13019 kcal/mol |
1.2588 kcal/mol |
17 27@LB@ | |@LB@5'-GGA...GCAAU ACAGG...GCA-3'@LB@ GGCAGUGGU@LB@ :|||||||:@LB@ UCGUCACCG@LB@3'-UUU...UCUUU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.51 kcal/mol@LB@Hybridization Energy -15.8954 kcal/mol@LB@Unfolding Energy - mRNA 2.13019 kcal/mol@LB@Unfolding Energy - sRNA 1.2588 kcal/mol@LB@@LB@Position - mRNA 18 -- 26@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
128 |
0.00928 |
0.2491 |
b0491 |
fetB |
-12.70 |
0.090276 |
178 -- 195 |
1 -- 17 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________177________________196\n_____________|__________________|\n5'-GCC...CAUGC________U____GAA__ACGCU...AGA-3'\n______________CGGAGAAA_GCAG___GC\n______________|::|||||_||||___||\n______________GUUUCUUU_CGUC___CG\n3'-UUU...CUGUA________U____AC___-5'\n_____________|_________________|\n_____________18________________1\n |
179 -- 185 |
10 -- 16 |
-17.1669 kcal/mol |
3.03232 kcal/mol |
1.43853 kcal/mol |
177 196@LB@ | |@LB@5'-GCC...CAUGC U GAA ACGCU...AGA-3'@LB@ CGGAGAAA GCAG GC@LB@ |::||||| |||| ||@LB@ GUUUCUUU CGUC CG@LB@3'-UUU...CUGUA U AC -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.1669 kcal/mol@LB@Unfolding Energy - mRNA 3.03232 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 10 -- 16@LB@ |
96 |
0.005909 |
0.216 |
b0511 |
ybbW |
-13.57 |
0.059054 |
201 -- 236 |
1 -- 27 |
putative allantoin transporter |
|
_____________200___________________________________237\n_____________|_____________________________________|\n5'-UGG...GAUUU____A_____________ACUAUUCC____AC_C___UAUAG...UUA-3'\n______________AUGG__ACAUCAGAGAAA________AGCA__G_GGC\n______________||||__||||||:|||||________||||__|_|||\n______________UACC__UGUAGUUUCUUU________UCGU__C_CCG\n3'-UUU...UGUUU____CC___________________________A___-5'\n_____________|____________________________________|\n_____________28___________________________________1\n |
211 -- 217 |
10 -- 16 |
-23.7564 kcal/mol |
7.66376 kcal/mol |
2.51867 kcal/mol |
200 237@LB@ | |@LB@5'-UGG...GAUUU A ACUAUUCC AC C UAUAG...UUA-3'@LB@ AUGG ACAUCAGAGAAA AGCA G GGC@LB@ |||| ||||||:||||| |||| | |||@LB@ UACC UGUAGUUUCUUU UCGU C CCG@LB@3'-UUU...UGUUU CC A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -23.7564 kcal/mol@LB@Unfolding Energy - mRNA 7.66376 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 201 -- 236@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 10 -- 16@LB@ |
58 |
0.00302 |
0.1789 |
b0556 |
rzpD |
-16.79 |
0.009474 |
64 -- 103 |
3 -- 36 |
DLP12 prophage; putative murein endopeptidase |
|
_____________63_________________________________________104\n_____________|__________________________________________|\n5'-CGC...CGCUU___________AAACCA___C___________C_____U___AUCAG...ACA-3'\n______________CUUCGCAAAAU______GGG_GAUAUCAAAGG___GCA_GUG\n______________||:|:||||||______|||_||:|||||||:___|||_|||\n______________GAGGUGUUUUA______CCC_CUGUAGUUUCU___CGU_CAC\n3'-UUU...UACCC________________________________UUU_______CG-5'\n_____________|__________________________________________|\n_____________37_________________________________________2\n |
89 -- 95 |
12 -- 18 |
-34.1904 kcal/mol |
10.724 kcal/mol |
6.67685 kcal/mol |
63 104@LB@ | |@LB@5'-CGC...CGCUU AAACCA C C U AUCAG...ACA-3'@LB@ CUUCGCAAAAU GGG GAUAUCAAAGG GCA GUG@LB@ ||:|:|||||| ||| ||:|||||||: ||| |||@LB@ GAGGUGUUUUA CCC CUGUAGUUUCU CGU CAC@LB@3'-UUU...UACCC UUU CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -34.1904 kcal/mol@LB@Unfolding Energy - mRNA 10.724 kcal/mol@LB@Unfolding Energy - sRNA 6.67685 kcal/mol@LB@@LB@Position - mRNA 64 -- 103@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 12 -- 18@LB@ |
172 |
0.01269 |
0.2504 |
b0571 |
cusR |
-10.48 |
0.230388 |
14 -- 48 |
1 -- 33 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________13___________________________________49\n_____________|____________________________________|\n5'-AGC...GGCCA__________CA__A___UAC__________UA___UCAUA...GGC-3'\n______________CACAAAAUGG__GA_GUU___AAGGAGA_CA__GGC\n______________||||||||||__||_:|:___|||:|:|_||__|||\n______________GUGUUUUACC__CU_UAG___UUCUUUU_GU__CCG\n3'-UUU...CCGAG__________C___G___U_________C__CA___-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
35 -- 41 |
9 -- 15 |
-22.821 kcal/mol |
9.26274 kcal/mol |
3.07861 kcal/mol |
13 49@LB@ | |@LB@5'-AGC...GGCCA CA A UAC UA UCAUA...GGC-3'@LB@ CACAAAAUGG GA GUU AAGGAGA CA GGC@LB@ |||||||||| || :|: |||:|:| || |||@LB@ GUGUUUUACC CU UAG UUCUUUU GU CCG@LB@3'-UUU...CCGAG C G U C CA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -22.821 kcal/mol@LB@Unfolding Energy - mRNA 9.26274 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 14 -- 48@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
114 |
0.007692 |
0.2368 |
b0584 |
fepA |
-13.71 |
0.055244 |
241 -- 265 |
1 -- 26 |
ferrienterobactin outer membrane transporter |
|
_____________240________________________266\n_____________|__________________________|\n5'-GAA...CAAUC___________U____U____CA___ACAAG...ACG-3'\n______________UGGGGAU_UUA_GGGG_AGCG__GGC\n______________||||||:_|:|_:|::_|||:__|||\n______________ACCCCUG_AGU_UCUU_UCGU__CCG\n3'-UUU...GUUUU_______U___U____U____CA___-5'\n_____________|_________________________|\n_____________27________________________1\n |
241 -- 247 |
20 -- 26 |
-24.8633 kcal/mol |
8.63835 kcal/mol |
2.51842 kcal/mol |
240 266@LB@ | |@LB@5'-GAA...CAAUC U U CA ACAAG...ACG-3'@LB@ UGGGGAU UUA GGGG AGCG GGC@LB@ ||||||: |:| :|:: |||: |||@LB@ ACCCCUG AGU UCUU UCGU CCG@LB@3'-UUU...GUUUU U U U CA -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -24.8633 kcal/mol@LB@Unfolding Energy - mRNA 8.63835 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 241 -- 265@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 20 -- 26@LB@ |
94 |
0.005808 |
0.2147 |
b0652 |
gltL |
-13.33 |
0.066498 |
266 -- 292 |
1 -- 31 |
glutamate/aspartate ABC transporter ATPase |
|
_____________265_____________________________293\n_____________|_______________________________|\n5'-CUC...UCAAC_______AAAA________C___________GGUUUGCG-3'\n______________CGAAGUG________AAGG_GAAGUGGUGGU\n______________|:||:||________||:|_:|||::||||:\n______________GUUUUAC________UUUC_UUUCGUCACCG\n3'-UUU...GAGGU_______CCCUGUAG____U___________-5'\n_____________|______________________________|\n_____________32_____________________________1\n |
286 -- 292 |
1 -- 7 |
-20.9442 kcal/mol |
5.07032 kcal/mol |
2.53929 kcal/mol |
265 293@LB@ | |@LB@5'-CUC...UCAAC AAAA C GGUUUGCG-3'@LB@ CGAAGUG AAGG GAAGUGGUGGU@LB@ |:||:|| ||:| :|||::||||:@LB@ GUUUUAC UUUC UUUCGUCACCG@LB@3'-UUU...GAGGU CCCUGUAG U -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -20.9442 kcal/mol@LB@Unfolding Energy - mRNA 5.07032 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 266 -- 292@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
125 |
0.009022 |
0.2491 |
b0658 |
ybeX |
-16.01 |
0.015431 |
14 -- 34 |
5 -- 21 |
putative ion transport |
|
_____________13____________________35\n_____________|_____________________|\n5'-UUA...CGAUC__________UGAC_______AAGAA...ACC-3'\n______________ACAUCGAAGA____GAAGCAG\n______________|||||:||||____:||||||\n______________UGUAGUUUCU____UUUCGUC\n3'-UUU...ACCCC_____________________ACCG-5'\n_____________|_____________________|\n_____________22____________________4\n |
28 -- 34 |
5 -- 11 |
-20.2475 kcal/mol |
2.73159 kcal/mol |
1.5073 kcal/mol |
13 35@LB@ | |@LB@5'-UUA...CGAUC UGAC AAGAA...ACC-3'@LB@ ACAUCGAAGA GAAGCAG@LB@ |||||:|||| :||||||@LB@ UGUAGUUUCU UUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -16.01 kcal/mol@LB@Hybridization Energy -20.2475 kcal/mol@LB@Unfolding Energy - mRNA 2.73159 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 14 -- 34@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |
32 |
0.001499 |
0.1635 |
b0661 |
miaB |
-12.88 |
0.082685 |
213 -- 250 |
6 -- 36 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________212____________________________________251\n_____________|______________________________________|\n5'-CGC...AAAAA_______UU_AAACC_____C_______U___C_____CGAUU...AAC-3'\n______________CUCCAUA__A_____UGGGG_UGUCAGA_GAA_GAGUA\n______________|||||:|__|_____|||||_::|||:|_|||_:||:|\n______________GAGGUGU__U_____ACCCC_GUAGUUU_CUU_UUCGU\n3'-UUU...UACCC_______UU___________U_________________CACCG-5'\n_____________|______________________________________|\n_____________37_____________________________________5\n |
234 -- 240 |
14 -- 20 |
-26.1374 kcal/mol |
6.57825 kcal/mol |
6.67617 kcal/mol |
212 251@LB@ | |@LB@5'-CGC...AAAAA UU AAACC C U C CGAUU...AAC-3'@LB@ CUCCAUA A UGGGG UGUCAGA GAA GAGUA@LB@ |||||:| | ||||| ::|||:| ||| :||:|@LB@ GAGGUGU U ACCCC GUAGUUU CUU UUCGU@LB@3'-UUU...UACCC UU U CACCG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -26.1374 kcal/mol@LB@Unfolding Energy - mRNA 6.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.67617 kcal/mol@LB@@LB@Position - mRNA 213 -- 250@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 14 -- 20@LB@ |
51 |
0.00253 |
0.1729 |
b0699 |
ybfA |
-18.06 |
0.004001 |
182 -- 204 |
2 -- 32 |
DUF2517 family protein |
|
_____________181_____________________________205\n_____________|_______________________________|\n5'-AUG...UAGAU_______________________________AACUC...GGA-3'\n______________ACAAAA_GGGG______GAGAAAAGUA_UGG\n______________||||||_||||______:|||||||:|_|||\n______________UGUUUU_CCCC______UUCUUUUCGU_ACC\n3'-UUU...CGAGG______A____UGUAGU__________C___G-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
195 -- 201 |
6 -- 12 |
-23.7835 kcal/mol |
3.18782 kcal/mol |
2.53929 kcal/mol |
181 205@LB@ | |@LB@5'-AUG...UAGAU AACUC...GGA-3'@LB@ ACAAAA GGGG GAGAAAAGUA UGG@LB@ |||||| |||| :|||||||:| |||@LB@ UGUUUU CCCC UUCUUUUCGU ACC@LB@3'-UUU...CGAGG A UGUAGU C G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -18.06 kcal/mol@LB@Hybridization Energy -23.7835 kcal/mol@LB@Unfolding Energy - mRNA 3.18782 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 6 -- 12@LB@ |
97 |
0.005972 |
0.2161 |
b0768 |
ybhD |
-15.34 |
0.022873 |
51 -- 78 |
6 -- 32 |
putative DNA-binding transcriptional regulator |
b2409 |
_____________50___________________________79\n_____________|____________________________|\n5'-CAG...UUAUU____U____UU__________C______UCUCU...CAU-3'\n______________GCGA_AUGG__ACAUUAAGGG_AAAGCA\n______________:|:|_||||__||||:||:|:_||||||\n______________UGUU_UACC__UGUAGUUUCU_UUUCGU\n3'-UUU...CGAGG____U____CC_________________CACCG-5'\n_____________|____________________________|\n_____________33___________________________5\n |
64 -- 70 |
13 -- 19 |
-24.2506 kcal/mol |
6.37495 kcal/mol |
2.53457 kcal/mol |
50 79@LB@ | |@LB@5'-CAG...UUAUU U UU C UCUCU...CAU-3'@LB@ GCGA AUGG ACAUUAAGGG AAAGCA@LB@ :|:| |||| ||||:||:|: ||||||@LB@ UGUU UACC UGUAGUUUCU UUUCGU@LB@3'-UUU...CGAGG U CC CACCG-5'@LB@ | |@LB@ 33 5@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -24.2506 kcal/mol@LB@Unfolding Energy - mRNA 6.37495 kcal/mol@LB@Unfolding Energy - sRNA 2.53457 kcal/mol@LB@@LB@Position - mRNA 51 -- 78@LB@Position - sRNA 6 -- 32@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 13 -- 19@LB@ |
110 |
0.007401 |
0.2348 |
b0784 |
moaD |
-14.78 |
0.031320 |
178 -- 203 |
3 -- 25 |
molybdopterin synthase small subunit |
|
_____________177________________________204\n_____________|__________________________|\n5'-GCA...AAGUC___U___U______U________A__AUUAA...AGC-3'\n______________GGG_GAC_UUAAGG_GGAAGCGG_UG\n______________|||_|||_|:||:|_::||||:|_||\n______________CCC_CUG_AGUUUC_UUUUCGUC_AC\n3'-UUU...UUUUA_______U__________________CG-5'\n_____________|__________________________|\n_____________26_________________________2\n |
194 -- 200 |
5 -- 11 |
-23.9822 kcal/mol |
6.68375 kcal/mol |
2.5166 kcal/mol |
177 204@LB@ | |@LB@5'-GCA...AAGUC U U U A AUUAA...AGC-3'@LB@ GGG GAC UUAAGG GGAAGCGG UG@LB@ ||| ||| |:||:| ::||||:| ||@LB@ CCC CUG AGUUUC UUUUCGUC AC@LB@3'-UUU...UUUUA U CG-5'@LB@ | |@LB@ 26 2@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -23.9822 kcal/mol@LB@Unfolding Energy - mRNA 6.68375 kcal/mol@LB@Unfolding Energy - sRNA 2.5166 kcal/mol@LB@@LB@Position - mRNA 178 -- 203@LB@Position - sRNA 3 -- 25@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
36 |
0.001784 |
0.1648 |
b0785 |
moaE |
-14.28 |
0.040953 |
241 -- 264 |
1 -- 21 |
molybdopterin synthase large subunit |
|
_____________240______________________265\n_____________|________________________|\n5'-AGA...GUUCA____A___________CCC_____UGGCG...CCU-3'\n______________GCGU_GGAGAAGAGUA___GUGGC\n______________:|:|_::||||:||:|___|||||\n______________UGUA_UUUCUUUUCGU___CACCG\n3'-UUU...ACCCC____G___________________-5'\n_____________|_______________________|\n_____________22______________________1\n |
250 -- 256 |
6 -- 12 |
-21.7367 kcal/mol |
5.94077 kcal/mol |
1.51103 kcal/mol |
240 265@LB@ | |@LB@5'-AGA...GUUCA A CCC UGGCG...CCU-3'@LB@ GCGU GGAGAAGAGUA GUGGC@LB@ :|:| ::||||:||:| |||||@LB@ UGUA UUUCUUUUCGU CACCG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -21.7367 kcal/mol@LB@Unfolding Energy - mRNA 5.94077 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 241 -- 264@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 6 -- 12@LB@ |
138 |
0.0102 |
0.2504 |
b0830 |
gsiB |
-12.88 |
0.082739 |
282 -- 298 |
1 -- 16 |
glutathione ABC transporter periplasmic binding protein |
|
_____________281_______________299\n_____________|_________________|\n5'-GGC...CUGCC_____UGU_________GG-3'\n______________AAAGA___GGUGGUGGC\n______________|||||___:|::|||||\n______________UUUCU___UCGUCACCG\n3'-UUU...UGUAG_____UU__________-5'\n_____________|________________|\n_____________17_______________1\n |
292 -- 298 |
1 -- 7 |
-17.0557 kcal/mol |
2.82856 kcal/mol |
1.34555 kcal/mol |
281 299@LB@ | |@LB@5'-GGC...CUGCC UGU GG-3'@LB@ AAAGA GGUGGUGGC@LB@ ||||| :|::|||||@LB@ UUUCU UCGUCACCG@LB@3'-UUU...UGUAG UU -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -17.0557 kcal/mol@LB@Unfolding Energy - mRNA 2.82856 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
196 |
0.01416 |
0.2529 |
b0870 |
ltaE |
-12.27 |
0.109556 |
23 -- 39 |
7 -- 23 |
L-allo-threonine aldolase PLP-dependent |
|
_____________22________________40\n_____________|_________________|\n5'-GUC...GUGGU__U__C___________UAGCC...ACC-3'\n______________GG_CG_CAAAGAAGAGU\n______________||_|:_|||||||:||:\n______________CC_GU_GUUUCUUUUCG\n3'-UUU...UUACC__U__A___________UCACCG-5'\n_____________|_________________|\n_____________24________________6\n |
33 -- 39 |
7 -- 13 |
-15.8177 kcal/mol |
2.94498 kcal/mol |
0.599063 kcal/mol |
22 40@LB@ | |@LB@5'-GUC...GUGGU U C UAGCC...ACC-3'@LB@ GG CG CAAAGAAGAGU@LB@ || |: |||||||:||:@LB@ CC GU GUUUCUUUUCG@LB@3'-UUU...UUACC U A UCACCG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -15.8177 kcal/mol@LB@Unfolding Energy - mRNA 2.94498 kcal/mol@LB@Unfolding Energy - sRNA 0.599063 kcal/mol@LB@@LB@Position - mRNA 23 -- 39@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 7 -- 13@LB@ |
28 |
0.001242 |
0.1512 |
b0879 |
macB |
-8.34 |
0.466885 |
135 -- 159 |
1 -- 22 |
macrolide ABC transporter peremase/ATPase |
|
_____________134_________________________160\n_____________|___________________________|\n5'-AAU...GUUGA__U_________GCUU___________GAUGA...CGG-3'\n______________GA_UGUCAAAGG____GAAGC_G_GGC\n______________||_::||||||:____:||||_|_|||\n______________CU_GUAGUUUCU____UUUCG_C_CCG\n3'-UUU...UACCC_____________________U_A___-5'\n_____________|__________________________|\n_____________23_________________________1\n |
140 -- 146 |
12 -- 18 |
-17.2972 kcal/mol |
7.41924 kcal/mol |
1.54023 kcal/mol |
134 160@LB@ | |@LB@5'-AAU...GUUGA U GCUU GAUGA...CGG-3'@LB@ GA UGUCAAAGG GAAGC G GGC@LB@ || ::||||||: :|||| | |||@LB@ CU GUAGUUUCU UUUCG C CCG@LB@3'-UUU...UACCC U A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -17.2972 kcal/mol@LB@Unfolding Energy - mRNA 7.41924 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 135 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 12 -- 18@LB@ |
52 |
0.002562 |
0.1729 |
b0881 |
clpS |
-16.21 |
0.013666 |
11 -- 25 |
5 -- 25 |
regulatory protein for ClpA substrate specificity |
|
_____________10____________________26\n_____________|_____________________|\n5'-GCA...UGACA_____________________GUAUG...UCA-3'\n______________GGGGACA______AGGGGCAG\n______________|||||||______|:::||||\n______________CCCCUGU______UUUUCGUC\n3'-UUU...UUUUA_______AGUUUC________ACCG-5'\n_____________|_____________________|\n_____________26____________________4\n |
19 -- 25 |
5 -- 11 |
-21.27 kcal/mol |
2.56205 kcal/mol |
2.50017 kcal/mol |
10 26@LB@ | |@LB@5'-GCA...UGACA GUAUG...UCA-3'@LB@ GGGGACA AGGGGCAG@LB@ ||||||| |:::||||@LB@ CCCCUGU UUUUCGUC@LB@3'-UUU...UUUUA AGUUUC ACCG-5'@LB@ | |@LB@ 26 4@LB@@LB@@LB@Energy -16.21 kcal/mol@LB@Hybridization Energy -21.27 kcal/mol@LB@Unfolding Energy - mRNA 2.56205 kcal/mol@LB@Unfolding Energy - sRNA 2.50017 kcal/mol@LB@@LB@Position - mRNA 11 -- 25@LB@Position - sRNA 5 -- 25@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 5 -- 11@LB@ |
164 |
0.01206 |
0.2504 |
b0882 |
clpA |
-9.12 |
0.369525 |
95 -- 107 |
48 -- 60 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________94____________108\n_____________|_____________|\n5'-UUU...GCAGA____A________AUGGU...CGC-3'\n______________AACC_AAGUGGCG\n______________||||_||:|||||\n______________UUGG_UUUACCGC\n3'-UUU...GGAAC____C________CCCAA...CCG-5'\n_____________|_____________|\n_____________61____________47\n |
101 -- 107 |
48 -- 54 |
-16.8445 kcal/mol |
3.76103 kcal/mol |
3.96136 kcal/mol |
94 108@LB@ | |@LB@5'-UUU...GCAGA A AUGGU...CGC-3'@LB@ AACC AAGUGGCG@LB@ |||| ||:|||||@LB@ UUGG UUUACCGC@LB@3'-UUU...GGAAC C CCCAA...CCG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -16.8445 kcal/mol@LB@Unfolding Energy - mRNA 3.76103 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 48 -- 54@LB@ |
69 |
0.003755 |
0.191 |
b0889 |
lrp |
-14.02 |
0.046951 |
165 -- 212 |
1 -- 32 |
leucine-responsive global transcriptional regulator |
|
_____________164______________________________________________213\n_____________|________________________________________________|\n5'-GUG...GUCAG______GUA____AGGAAUA________CAAUAAUAAU_____AUA__AAGAA...AGC-3'\n______________ACAGGA___GGGA_______CAGAGAGA__________GGUAG___GC\n______________|||::|___||||_______||:|||:|__________:|:||___||\n______________UGUUUU___CCCU_______GUUUCUUU__________UCGUC___CG\n3'-UUU...CGAGG______AC_____GUA___________________________AC___-5'\n_____________|_______________________________________________|\n_____________33______________________________________________1\n |
186 -- 192 |
10 -- 16 |
-19.2298 kcal/mol |
2.66644 kcal/mol |
2.53929 kcal/mol |
164 213@LB@ | |@LB@5'-GUG...GUCAG GUA AGGAAUA CAAUAAUAAU AUA AAGAA...AGC-3'@LB@ ACAGGA GGGA CAGAGAGA GGUAG GC@LB@ |||::| |||| ||:|||:| :|:|| ||@LB@ UGUUUU CCCU GUUUCUUU UCGUC CG@LB@3'-UUU...CGAGG AC GUA AC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.02 kcal/mol@LB@Hybridization Energy -19.2298 kcal/mol@LB@Unfolding Energy - mRNA 2.66644 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 165 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 10 -- 16@LB@ |
151 |
0.01116 |
0.2504 |
b0903 |
pflB |
-10.70 |
0.211701 |
140 -- 166 |
4 -- 34 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________139_____________________________167\n_____________|_______________________________|\n5'-CAC...GACCA____U______U__________UAC______AAAUA...ACU-3'\n______________CCAU__AAUGG___UGUCGAAG____GCAGU\n______________|||:__|||||___::||:|||____|||||\n______________GGUG__UUACC___GUAGUUUC____CGUCA\n3'-UUU...CCCGA____UU_____CCU________UUUU_____CCG-5'\n_____________|_______________________________|\n_____________35______________________________3\n |
152 -- 158 |
13 -- 19 |
-21.5315 kcal/mol |
6.56187 kcal/mol |
4.26884 kcal/mol |
139 167@LB@ | |@LB@5'-CAC...GACCA U U UAC AAAUA...ACU-3'@LB@ CCAU AAUGG UGUCGAAG GCAGU@LB@ |||: ||||| ::||:||| |||||@LB@ GGUG UUACC GUAGUUUC CGUCA@LB@3'-UUU...CCCGA UU CCU UUUU CCG-5'@LB@ | |@LB@ 35 3@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -21.5315 kcal/mol@LB@Unfolding Energy - mRNA 6.56187 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 140 -- 166@LB@Position - sRNA 4 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 13 -- 19@LB@ |
189 |
0.01393 |
0.2529 |
b0934 |
ssuC |
-14.25 |
0.041816 |
137 -- 153 |
1 -- 17 |
aliphatic sulfonate ABC transporter permease |
|
_____________136_______________154\n_____________|_________________|\n5'-UGC...AUCCG_____C___________GAAUG...GGC-3'\n______________CAAGG_GAAGCGGUGGC\n______________|||:|_:||||:|||||\n______________GUUUC_UUUCGUCACCG\n3'-UUU...CUGUA_____U___________-5'\n_____________|________________|\n_____________18_______________1\n |
147 -- 153 |
1 -- 7 |
-24.8998 kcal/mol |
9.21593 kcal/mol |
1.43853 kcal/mol |
136 154@LB@ | |@LB@5'-UGC...AUCCG C GAAUG...GGC-3'@LB@ CAAGG GAAGCGGUGGC@LB@ |||:| :||||:|||||@LB@ GUUUC UUUCGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -24.8998 kcal/mol@LB@Unfolding Energy - mRNA 9.21593 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 137 -- 153@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 1 -- 7@LB@ |
194 |
0.01408 |
0.2529 |
b0952 |
pqiC |
-11.52 |
0.151794 |
181 -- 195 |
48 -- 61 |
DUF330 family putative lipoprotein |
|
_____________180_____________196\n_____________|_______________|\n5'-ACG...AUCCA_________AG____AAACA...GCG-3'\n______________GAGCCGAAG__GGCG\n______________||:|||||:__||||\n______________CUUGGCUUU__CCGC\n3'-UUU...UGGAA_________A_____CCCAA...CCG-5'\n_____________|_______________|\n_____________62______________47\n |
183 -- 189 |
53 -- 59 |
-21.1549 kcal/mol |
5.66908 kcal/mol |
3.96136 kcal/mol |
180 196@LB@ | |@LB@5'-ACG...AUCCA AG AAACA...GCG-3'@LB@ GAGCCGAAG GGCG@LB@ ||:|||||: ||||@LB@ CUUGGCUUU CCGC@LB@3'-UUU...UGGAA A CCCAA...CCG-5'@LB@ | |@LB@ 62 47@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -21.1549 kcal/mol@LB@Unfolding Energy - mRNA 5.66908 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 181 -- 195@LB@Position - sRNA 48 -- 61@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 53 -- 59@LB@ |
137 |
0.0102 |
0.2504 |
b0957 |
ompA |
-10.25 |
0.250752 |
198 -- 232 |
1 -- 30 |
outer membrane protein A (3a;II*;G;d) |
|
_____________197_________________________________233\n_____________|___________________________________|\n5'-CUU...CGCAA______AAAAA____GCUAUCGC__UU________ACUGG...AAC-3'\n______________AAAAUG_____GACA________GA__GCAGUGGC\n______________||||||_____||||________:|__||||||||\n______________UUUUAC_____CUGU________UU__CGUCACCG\n3'-UUU...AGGUG______CC_______AGUUUC____UU________-5'\n_____________|__________________________________|\n_____________31_________________________________1\n |
226 -- 232 |
1 -- 7 |
-21.624 kcal/mol |
8.85247 kcal/mol |
2.51911 kcal/mol |
197 233@LB@ | |@LB@5'-CUU...CGCAA AAAAA GCUAUCGC UU ACUGG...AAC-3'@LB@ AAAAUG GACA GA GCAGUGGC@LB@ |||||| |||| :| ||||||||@LB@ UUUUAC CUGU UU CGUCACCG@LB@3'-UUU...AGGUG CC AGUUUC UU -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.624 kcal/mol@LB@Unfolding Energy - mRNA 8.85247 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 232@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 1 -- 7@LB@ |
42 |
0.002133 |
0.1648 |
b0968 |
yccX |
-12.44 |
0.101807 |
184 -- 198 |
5 -- 23 |
weak acylphosphatase |
|
_____________183_________________199\n_____________|___________________|\n5'-GGC...AUUAA___________________CAAUG...CCG-3'\n______________GGAUA____AGGAGAGCAG\n______________|||:|____||:|:|||||\n______________CCUGU____UCUUUUCGUC\n3'-UUU...UUACC_____AGUU__________ACCG-5'\n_____________|___________________|\n_____________24__________________4\n |
192 -- 198 |
5 -- 11 |
-17.1825 kcal/mol |
3.17176 kcal/mol |
1.57523 kcal/mol |
183 199@LB@ | |@LB@5'-GGC...AUUAA CAAUG...CCG-3'@LB@ GGAUA AGGAGAGCAG@LB@ |||:| ||:|:|||||@LB@ CCUGU UCUUUUCGUC@LB@3'-UUU...UUACC AGUU ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -17.1825 kcal/mol@LB@Unfolding Energy - mRNA 3.17176 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 184 -- 198@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
41 |
0.002071 |
0.1648 |
b0992 |
yccM |
-9.88 |
0.287125 |
161 -- 167 |
1 -- 7 |
putative 4Fe-4S membrane protein |
|
_____________160_____168\n_____________|_______|\n5'-AUC...UAGAA_______AUUUG...AAG-3'\n______________UAGUGGC\n______________:||||||\n______________GUCACCG\n3'-UUU...UUUUC_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-11.7646 kcal/mol |
0.660682 kcal/mol |
1.22779 kcal/mol |
160 168@LB@ | |@LB@5'-AUC...UAGAA AUUUG...AAG-3'@LB@ UAGUGGC@LB@ :||||||@LB@ GUCACCG@LB@3'-UUU...UUUUC -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -11.7646 kcal/mol@LB@Unfolding Energy - mRNA 0.660682 kcal/mol@LB@Unfolding Energy - sRNA 1.22779 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
143 |
0.01049 |
0.2504 |
b1004 |
wrbA |
-9.61 |
0.314473 |
272 -- 293 |
1 -- 25 |
NAD(P)H:quinone oxidoreductase |
|
_____________271________________________294\n_____________|__________________________|\n5'-UUA...GCUGA___U_________C_______A____GCUGAAG-3'\n______________GGG_GCA____AG_AAAGUGG_UGGC\n______________|||_:||____||_||||::|_||||\n______________CCC_UGU____UC_UUUCGUC_ACCG\n3'-UUU...UUUUA___C___AGUU__U____________-5'\n_____________|_________________________|\n_____________26________________________1\n |
282 -- 288 |
5 -- 11 |
-20.1219 kcal/mol |
7.99134 kcal/mol |
2.51748 kcal/mol |
271 294@LB@ | |@LB@5'-UUA...GCUGA U C A GCUGAAG-3'@LB@ GGG GCA AG AAAGUGG UGGC@LB@ ||| :|| || ||||::| ||||@LB@ CCC UGU UC UUUCGUC ACCG@LB@3'-UUU...UUUUA C AGUU U -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -20.1219 kcal/mol@LB@Unfolding Energy - mRNA 7.99134 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 5 -- 11@LB@ |
167 |
0.01216 |
0.2504 |
b1013 |
rutR |
-12.90 |
0.082087 |
181 -- 218 |
3 -- 35 |
rut operon transcriptional repressor for |
b0796 |
_____________180________________________________________219\n_____________|__________________________________________|\n5'-CAA...GCCAA_______________GAGCGCAUGACG_____C_________AAAAC...AAU-3'\n______________UCUACAAGA_GGGGA____________CAAGG____GCAGUG\n______________||:||||:|_|||||____________|||:|____||||||\n______________AGGUGUUUU_CCCCU____________GUUUC____CGUCAC\n3'-UUU...ACCCG_________A_____GUA______________UUUU______CG-5'\n_____________|__________________________________________|\n_____________36_________________________________________2\n |
181 -- 187 |
29 -- 35 |
-29.1146 kcal/mol |
11.1798 kcal/mol |
5.03644 kcal/mol |
180 219@LB@ | |@LB@5'-CAA...GCCAA GAGCGCAUGACG C AAAAC...AAU-3'@LB@ UCUACAAGA GGGGA CAAGG GCAGUG@LB@ ||:||||:| ||||| |||:| ||||||@LB@ AGGUGUUUU CCCCU GUUUC CGUCAC@LB@3'-UUU...ACCCG A GUA UUUU CG-5'@LB@ | |@LB@ 36 2@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -29.1146 kcal/mol@LB@Unfolding Energy - mRNA 11.1798 kcal/mol@LB@Unfolding Energy - sRNA 5.03644 kcal/mol@LB@@LB@Position - mRNA 181 -- 218@LB@Position - sRNA 3 -- 35@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 29 -- 35@LB@ |
10 |
0.0003274 |
0.1087 |
b1020 |
phoH |
-9.93 |
0.281763 |
74 -- 85 |
48 -- 59 |
ATP-binding protein; putative PhoH family P-loop ATPase |
|
_____________73___________86\n_____________|____________|\n5'-AAU...AUGUC____________UUUUA...AAC-3'\n______________ACUGAAAUGGUG\n______________||:|||||||:|\n______________UGGCUUUACCGC\n3'-UUU...GAACU____________CCCAA...CCG-5'\n_____________|____________|\n_____________60___________47\n |
79 -- 85 |
48 -- 54 |
-17.134 kcal/mol |
3.24305 kcal/mol |
3.96136 kcal/mol |
73 86@LB@ | |@LB@5'-AAU...AUGUC UUUUA...AAC-3'@LB@ ACUGAAAUGGUG@LB@ ||:|||||||:|@LB@ UGGCUUUACCGC@LB@3'-UUU...GAACU CCCAA...CCG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -17.134 kcal/mol@LB@Unfolding Energy - mRNA 3.24305 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 74 -- 85@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 48 -- 54@LB@ |
144 |
0.01052 |
0.2504 |
b1066 |
rimJ |
-12.60 |
0.094480 |
174 -- 195 |
1 -- 22 |
ribosomal-protein-S5-alanine N-acetyltransferase |
|
_____________173_____________________196\n_____________|_______________________|\n5'-AUU...UUAAA_______C___________A___AUAGA...AUU-3'\n______________GACGUUA_GGGAAGG_AGU_GGU\n______________|||:|:|_:|:||:|_|||_||:\n______________CUGUAGU_UCUUUUC_UCA_CCG\n3'-UUU...UACCC_______U_______G_______-5'\n_____________|______________________|\n_____________23_____________________1\n |
182 -- 188 |
8 -- 14 |
-20.3318 kcal/mol |
6.19349 kcal/mol |
1.54023 kcal/mol |
173 196@LB@ | |@LB@5'-AUU...UUAAA C A AUAGA...AUU-3'@LB@ GACGUUA GGGAAGG AGU GGU@LB@ |||:|:| :|:||:| ||| ||:@LB@ CUGUAGU UCUUUUC UCA CCG@LB@3'-UUU...UACCC U G -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -20.3318 kcal/mol@LB@Unfolding Energy - mRNA 6.19349 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 174 -- 195@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 8 -- 14@LB@ |
120 |
0.00842 |
0.2462 |
b1068 |
yceM |
-12.88 |
0.082928 |
190 -- 205 |
9 -- 24 |
putative oxidoreductase |
|
_____________189______________206\n_____________|________________|\n5'-GCG...CAUCU____G_______U___AAAAU...GAG-3'\n______________GGGA_AUUAAAG_GAA\n______________||||_||:||||_:||\n______________CCCU_UAGUUUC_UUU\n3'-UUU...UUUAC____G_______U___CGUCACCG-5'\n_____________|________________|\n_____________25_______________8\n |
195 -- 201 |
13 -- 19 |
-15.5519 kcal/mol |
2.0153 kcal/mol |
0.659805 kcal/mol |
189 206@LB@ | |@LB@5'-GCG...CAUCU G U AAAAU...GAG-3'@LB@ GGGA AUUAAAG GAA@LB@ |||| ||:|||| :||@LB@ CCCU UAGUUUC UUU@LB@3'-UUU...UUUAC G U CGUCACCG-5'@LB@ | |@LB@ 25 8@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -15.5519 kcal/mol@LB@Unfolding Energy - mRNA 2.0153 kcal/mol@LB@Unfolding Energy - sRNA 0.659805 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 9 -- 24@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 13 -- 19@LB@ |
171 |
0.01235 |
0.2504 |
b1092 |
fabD |
-9.75 |
0.300248 |
258 -- 270 |
47 -- 59 |
malonyl-CoA-[acyl-carrier-protein] transacylase |
|
_____________257___________271\n_____________|_____________|\n5'-AAC...UGCUG_____U_______CGAGC...UUG-3'\n______________GCUGA_AUGGCGG\n______________:|:||_|||||||\n______________UGGCU_UACCGCC\n3'-UUU...GAACU_____U_______CCAAC...CCG-5'\n_____________|_____________|\n_____________60____________46\n |
264 -- 270 |
47 -- 53 |
-17.9053 kcal/mol |
4.19285 kcal/mol |
3.96442 kcal/mol |
257 271@LB@ | |@LB@5'-AAC...UGCUG U CGAGC...UUG-3'@LB@ GCUGA AUGGCGG@LB@ :|:|| |||||||@LB@ UGGCU UACCGCC@LB@3'-UUU...GAACU U CCAAC...CCG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -17.9053 kcal/mol@LB@Unfolding Energy - mRNA 4.19285 kcal/mol@LB@Unfolding Energy - sRNA 3.96442 kcal/mol@LB@@LB@Position - mRNA 258 -- 270@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 47 -- 53@LB@ |
13 |
0.0004028 |
0.1087 |
b1107 |
nagZ |
-16.35 |
0.012500 |
184 -- 201 |
3 -- 21 |
beta N-acetyl-glucosaminidase |
|
_____________183_________________202\n_____________|___________________|\n5'-AUU...AUAAA___AU______________UGGGU...CGC-3'\n______________ACA___AAGGAGAGCAGUG\n______________|||___|||:|:|||||||\n______________UGU___UUCUUUUCGUCAC\n3'-UUU...ACCCC___AGU_____________CG-5'\n_____________|___________________|\n_____________22__________________2\n |
195 -- 201 |
3 -- 9 |
-19.0842 kcal/mol |
1.22154 kcal/mol |
1.5107 kcal/mol |
183 202@LB@ | |@LB@5'-AUU...AUAAA AU UGGGU...CGC-3'@LB@ ACA AAGGAGAGCAGUG@LB@ ||| |||:|:|||||||@LB@ UGU UUCUUUUCGUCAC@LB@3'-UUU...ACCCC AGU CG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -16.35 kcal/mol@LB@Hybridization Energy -19.0842 kcal/mol@LB@Unfolding Energy - mRNA 1.22154 kcal/mol@LB@Unfolding Energy - sRNA 1.5107 kcal/mol@LB@@LB@Position - mRNA 184 -- 201@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 3 -- 9@LB@ |
49 |
0.002324 |
0.1648 |
b1119 |
nagK |
-12.21 |
0.112661 |
180 -- 199 |
1 -- 21 |
N-acetyl-D-glucosamine kinase |
|
_____________179___________________200\n_____________|_____________________|\n5'-UCA...GCAGU________AC____G__C___AAUGU...GUG-3'\n______________ACAUUAAA___AAG_AG_GGC\n______________||||:|||___|||_||_|||\n______________UGUAGUUU___UUC_UC_CCG\n3'-UUU...ACCCC________CUU___G__A___-5'\n_____________|____________________|\n_____________22___________________1\n |
181 -- 187 |
14 -- 20 |
-16.408 kcal/mol |
2.6857 kcal/mol |
1.51103 kcal/mol |
179 200@LB@ | |@LB@5'-UCA...GCAGU AC G C AAUGU...GUG-3'@LB@ ACAUUAAA AAG AG GGC@LB@ ||||:||| ||| || |||@LB@ UGUAGUUU UUC UC CCG@LB@3'-UUU...ACCCC CUU G A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -16.408 kcal/mol@LB@Unfolding Energy - mRNA 2.6857 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 14 -- 20@LB@ |
132 |
0.00937 |
0.2491 |
b1120 |
cobB |
-12.17 |
0.114836 |
175 -- 191 |
3 -- 18 |
deacetylase of acs and cheY chemotaxis regulator |
|
_____________174_______________192\n_____________|_________________|\n5'-CGC...UUUUU_______U_________CCGGA...AUC-3'\n______________UCAGAGA_AAAGUGGUG\n______________|||:|||_||||::|||\n______________AGUUUCU_UUUCGUCAC\n3'-UUU...CCUGU_________________CG-5'\n_____________|_________________|\n_____________19________________2\n |
185 -- 191 |
3 -- 9 |
-17.0979 kcal/mol |
3.47557 kcal/mol |
1.45388 kcal/mol |
174 192@LB@ | |@LB@5'-CGC...UUUUU U CCGGA...AUC-3'@LB@ UCAGAGA AAAGUGGUG@LB@ |||:||| ||||::|||@LB@ AGUUUCU UUUCGUCAC@LB@3'-UUU...CCUGU CG-5'@LB@ | |@LB@ 19 2@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -17.0979 kcal/mol@LB@Unfolding Energy - mRNA 3.47557 kcal/mol@LB@Unfolding Energy - sRNA 1.45388 kcal/mol@LB@@LB@Position - mRNA 175 -- 191@LB@Position - sRNA 3 -- 18@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 3 -- 9@LB@ |
5 |
2.356e-05 |
0.01653 |
b1123 |
potD |
-19.53 |
0.001282 |
190 -- 207 |
9 -- 25 |
spermidine/putrescine ABC transporter periplasmic binding protein |
|
_____________189________________208\n_____________|__________________|\n5'-GAC...ACACA____________U_____AAUGG...ACU-3'\n______________GGGGACGUUAAA_GAAAA\n______________||||||:|:|||_|||||\n______________CCCCUGUAGUUU_CUUUU\n3'-UUU...UUUUA__________________CGUCACCG-5'\n_____________|__________________|\n_____________26_________________8\n |
195 -- 201 |
14 -- 20 |
-22.5319 kcal/mol |
2.32696 kcal/mol |
0.671024 kcal/mol |
189 208@LB@ | |@LB@5'-GAC...ACACA U AAUGG...ACU-3'@LB@ GGGGACGUUAAA GAAAA@LB@ ||||||:|:||| |||||@LB@ CCCCUGUAGUUU CUUUU@LB@3'-UUU...UUUUA CGUCACCG-5'@LB@ | |@LB@ 26 8@LB@@LB@@LB@Energy -19.53 kcal/mol@LB@Hybridization Energy -22.5319 kcal/mol@LB@Unfolding Energy - mRNA 2.32696 kcal/mol@LB@Unfolding Energy - sRNA 0.671024 kcal/mol@LB@@LB@Position - mRNA 190 -- 207@LB@Position - sRNA 9 -- 25@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 14 -- 20@LB@ |
34 |
0.001647 |
0.1648 |
b1218 |
chaC |
-13.74 |
0.054411 |
171 -- 189 |
1 -- 17 |
cation transport regulator |
|
_____________170_________________190\n_____________|___________________|\n5'-AUA...UGUCG________UAU________GGAAG...CGC-3'\n______________CAGGGAAG___GCAGUGGC\n______________||::|||:___||||||||\n______________GUUUCUUU___CGUCACCG\n3'-UUU...CUGUA________U__________-5'\n_____________|__________________|\n_____________18_________________1\n |
183 -- 189 |
1 -- 7 |
-23.3292 kcal/mol |
8.15416 kcal/mol |
1.43853 kcal/mol |
170 190@LB@ | |@LB@5'-AUA...UGUCG UAU GGAAG...CGC-3'@LB@ CAGGGAAG GCAGUGGC@LB@ ||::|||: ||||||||@LB@ GUUUCUUU CGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.74 kcal/mol@LB@Hybridization Energy -23.3292 kcal/mol@LB@Unfolding Energy - mRNA 8.15416 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 171 -- 189@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 1 -- 7@LB@ |
90 |
0.005632 |
0.2147 |
b1234 |
rssA |
-9.83 |
0.291555 |
191 -- 222 |
1 -- 26 |
putative patatin-like family phospholipase |
|
_____________190_______________________________223\n_____________|_________________________________|\n5'-GAU...AAUCU__C____AUAAU_______AUAAAAA_______UGGCG...AAA-3'\n______________UG_GGGA_____GAGAAAG_______UAG_GGC\n______________||_||||_____:|||||:_______:||_|||\n______________AC_CCCU_____UUCUUUU_______GUC_CCG\n3'-UUU...GUUUU_______GUAGU_______C_________A___-5'\n_____________|________________________________|\n_____________27_______________________________1\n |
203 -- 209 |
9 -- 15 |
-16.1024 kcal/mol |
3.75149 kcal/mol |
2.51842 kcal/mol |
190 223@LB@ | |@LB@5'-GAU...AAUCU C AUAAU AUAAAAA UGGCG...AAA-3'@LB@ UG GGGA GAGAAAG UAG GGC@LB@ || |||| :|||||: :|| |||@LB@ AC CCCU UUCUUUU GUC CCG@LB@3'-UUU...GUUUU GUAGU C A -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -16.1024 kcal/mol@LB@Unfolding Energy - mRNA 3.75149 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 191 -- 222@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
77 |
0.004622 |
0.2062 |
b1241 |
adhE |
-12.78 |
0.086641 |
182 -- 205 |
1 -- 21 |
fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase |
|
_____________181______________________206\n_____________|________________________|\n5'-AAU...GUUUA______UC_________UUA____UGUUA...AAA-3'\n______________ACAUUA__AGGAGAGCA___UGGC\n______________||||:|__||:|:||||___||||\n______________UGUAGU__UCUUUUCGU___ACCG\n3'-UUU...ACCCC______U__________C______-5'\n_____________|_______________________|\n_____________22______________________1\n |
192 -- 198 |
6 -- 12 |
-20.8292 kcal/mol |
6.5343 kcal/mol |
1.51103 kcal/mol |
181 206@LB@ | |@LB@5'-AAU...GUUUA UC UUA UGUUA...AAA-3'@LB@ ACAUUA AGGAGAGCA UGGC@LB@ ||||:| ||:|:|||| ||||@LB@ UGUAGU UCUUUUCGU ACCG@LB@3'-UUU...ACCCC U C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -20.8292 kcal/mol@LB@Unfolding Energy - mRNA 6.5343 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 182 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 6 -- 12@LB@ |
62 |
0.003256 |
0.1843 |
b1243 |
oppA |
-14.22 |
0.042360 |
208 -- 232 |
1 -- 21 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________207_______________________233\n_____________|_________________________|\n5'-UGU...GACCA______CC_________UU___A__AGCUG...UCA-3'\n______________ACAUCA__AAGAGAAGU__AGU_GC\n______________||||||__||||:|||:__|||_||\n______________UGUAGU__UUCUUUUCG__UCA_CG\n3'-UUU...ACCCC______________________C__-5'\n_____________|________________________|\n_____________22_______________________1\n |
218 -- 224 |
7 -- 13 |
-18.9529 kcal/mol |
3.22094 kcal/mol |
1.51103 kcal/mol |
207 233@LB@ | |@LB@5'-UGU...GACCA CC UU A AGCUG...UCA-3'@LB@ ACAUCA AAGAGAAGU AGU GC@LB@ |||||| ||||:|||: ||| ||@LB@ UGUAGU UUCUUUUCG UCA CG@LB@3'-UUU...ACCCC C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -18.9529 kcal/mol@LB@Unfolding Energy - mRNA 3.22094 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 208 -- 232@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 7 -- 13@LB@ |
17 |
0.0006839 |
0.1243 |
b1247 |
oppF |
-10.96 |
0.191014 |
264 -- 288 |
1 -- 22 |
oligopeptide ABC transporter ATPase |
|
_____________263________________________289\n_____________|__________________________|\n5'-GCG...ACUUU__A________U____AAAC______UCUGG...CGC-3'\n______________GA_AUCAAAGA__GGC____AGUGGU\n______________||_||||||||__:||____|||||:\n______________CU_UAGUUUCU__UCG____UCACCG\n3'-UUU...UACCC__G________UU_____________-5'\n_____________|_________________________|\n_____________23________________________1\n |
268 -- 274 |
12 -- 18 |
-19.2479 kcal/mol |
6.74487 kcal/mol |
1.54023 kcal/mol |
263 289@LB@ | |@LB@5'-GCG...ACUUU A U AAAC UCUGG...CGC-3'@LB@ GA AUCAAAGA GGC AGUGGU@LB@ || |||||||| :|| |||||:@LB@ CU UAGUUUCU UCG UCACCG@LB@3'-UUU...UACCC G UU -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -19.2479 kcal/mol@LB@Unfolding Energy - mRNA 6.74487 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 264 -- 288@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 12 -- 18@LB@ |
93 |
0.00579 |
0.2147 |
b1256 |
ompW |
-13.14 |
0.073154 |
206 -- 220 |
1 -- 16 |
outer membrane protein W |
|
_____________205______________221\n_____________|________________|\n5'-GAC...AUGAA____UU__________GGCUU...CUG-3'\n______________AAAG__AA_CAGUGGC\n______________||||__||_|||||||\n______________UUUC__UU_GUCACCG\n3'-UUU...UGUAG____UU__C_______-5'\n_____________|_______________|\n_____________17______________1\n |
214 -- 220 |
1 -- 7 |
-16.0357 kcal/mol |
1.55126 kcal/mol |
1.34555 kcal/mol |
205 221@LB@ | |@LB@5'-GAC...AUGAA UU GGCUU...CUG-3'@LB@ AAAG AA CAGUGGC@LB@ |||| || |||||||@LB@ UUUC UU GUCACCG@LB@3'-UUU...UGUAG UU C -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -16.0357 kcal/mol@LB@Unfolding Energy - mRNA 1.55126 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 206 -- 220@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 1 -- 7@LB@ |
179 |
0.01303 |
0.2504 |
b1276 |
acnA |
-14.81 |
0.030801 |
184 -- 199 |
7 -- 22 |
aconitate hydratase 1; aconitase A |
|
_____________183______________200\n_____________|________________|\n5'-CUU...ACCCU_U______________UAUGU...GCG-3'\n______________G_CAUUAAGGAGGAGC\n______________|_|||:||:||::|||\n______________C_GUAGUUUCUUUUCG\n3'-UUU...UACCC_U______________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
193 -- 199 |
7 -- 13 |
-17.7225 kcal/mol |
2.31939 kcal/mol |
0.590875 kcal/mol |
183 200@LB@ | |@LB@5'-CUU...ACCCU U UAUGU...GCG-3'@LB@ G CAUUAAGGAGGAGC@LB@ | |||:||:||::|||@LB@ C GUAGUUUCUUUUCG@LB@3'-UUU...UACCC U UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -14.81 kcal/mol@LB@Hybridization Energy -17.7225 kcal/mol@LB@Unfolding Energy - mRNA 2.31939 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 184 -- 199@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 7 -- 13@LB@ |
100 |
0.006296 |
0.2188 |
b1321 |
ycjX |
-13.69 |
0.055797 |
38 -- 45 |
18 -- 25 |
DUF463 family protein puatative P-loop NTPase |
|
_____________37_______46\n_____________|________|\n5'-UGA...UAGUA________AGGUC...CAG-3'\n______________GGGGACAU\n______________||||||||\n______________CCCCUGUA\n3'-UUU...UUUUA________GUUUC...CCG-5'\n_____________|________|\n_____________26_______17\n |
39 -- 45 |
18 -- 24 |
-15.5505 kcal/mol |
1.21152 kcal/mol |
0.65218 kcal/mol |
37 46@LB@ | |@LB@5'-UGA...UAGUA AGGUC...CAG-3'@LB@ GGGGACAU@LB@ ||||||||@LB@ CCCCUGUA@LB@3'-UUU...UUUUA GUUUC...CCG-5'@LB@ | |@LB@ 26 17@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -15.5505 kcal/mol@LB@Unfolding Energy - mRNA 1.21152 kcal/mol@LB@Unfolding Energy - sRNA 0.65218 kcal/mol@LB@@LB@Position - mRNA 38 -- 45@LB@Position - sRNA 18 -- 25@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 18 -- 24@LB@ |
187 |
0.01374 |
0.2529 |
b1344 |
ttcA |
-15.51 |
0.020761 |
46 -- 73 |
1 -- 29 |
tRNA s(2)C32 thioltransferase iron sulfur cluster protein |
|
_____________45_____________________________74\n_____________|______________________________|\n5'-GCU...CAGCC____________G___CUGC_____A____GUAUG...UCA-3'\n______________AAAUGGGG_CAU_AAA_____GCAG_UGGU\n______________||||||||_|||_|||_____||||_|||:\n______________UUUACCCC_GUA_UUU_____CGUC_ACCG\n3'-UUU...GGUGU________U___G___CUUUU_________-5'\n_____________|_____________________________|\n_____________30____________________________1\n |
47 -- 53 |
22 -- 28 |
-26.0543 kcal/mol |
8.02666 kcal/mol |
2.51907 kcal/mol |
45 74@LB@ | |@LB@5'-GCU...CAGCC G CUGC A GUAUG...UCA-3'@LB@ AAAUGGGG CAU AAA GCAG UGGU@LB@ |||||||| ||| ||| |||| |||:@LB@ UUUACCCC GUA UUU CGUC ACCG@LB@3'-UUU...GGUGU U G CUUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.51 kcal/mol@LB@Hybridization Energy -26.0543 kcal/mol@LB@Unfolding Energy - mRNA 8.02666 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 46 -- 73@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 22 -- 28@LB@ |
135 |
0.009724 |
0.2504 |
b1387 |
paaZ |
-12.57 |
0.095542 |
174 -- 198 |
5 -- 30 |
oxepin-CoA hydrolase and 3-oxo-5 6-dehydrosuberyl-CoA semialdehyde dehydrogenase |
|
_____________173_________________________199\n_____________|___________________________|\n5'-UAA...CAACA______U_AA_____U___________CGAUG...AAG-3'\n______________GAAAUG_G__ACAUC___GGAGAGUAG\n______________:|||||_|__|||||___|:|:||:||\n______________UUUUAC_C__UGUAG___CUUUUCGUC\n3'-UUU...AGGUG________CC_____UUU_________ACCG-5'\n_____________|___________________________|\n_____________31__________________________4\n |
192 -- 198 |
5 -- 11 |
-19.0129 kcal/mol |
3.93627 kcal/mol |
2.50278 kcal/mol |
173 199@LB@ | |@LB@5'-UAA...CAACA U AA U CGAUG...AAG-3'@LB@ GAAAUG G ACAUC GGAGAGUAG@LB@ :||||| | ||||| |:|:||:||@LB@ UUUUAC C UGUAG CUUUUCGUC@LB@3'-UUU...AGGUG CC UUU ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -19.0129 kcal/mol@LB@Unfolding Energy - mRNA 3.93627 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 174 -- 198@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
134 |
0.009704 |
0.2504 |
b1444 |
patD |
-10.55 |
0.224369 |
279 -- 297 |
10 -- 25 |
gamma-aminobutyraldehyde dehydrogenase |
|
_____________278_________________298\n_____________|___________________|\n5'-UCG...CAACG_________UUACU_____UUG-3'\n______________GGGGACGUU_____GGAAA\n______________||||||:|:_____:||||\n______________CCCCUGUAG_____UCUUU\n3'-UUU...UUUUA_________UU________UCGUC...CCG-5'\n_____________|___________________|\n_____________26__________________9\n |
281 -- 287 |
17 -- 23 |
-18.1658 kcal/mol |
6.94606 kcal/mol |
0.670388 kcal/mol |
278 298@LB@ | |@LB@5'-UCG...CAACG UUACU UUG-3'@LB@ GGGGACGUU GGAAA@LB@ ||||||:|: :||||@LB@ CCCCUGUAG UCUUU@LB@3'-UUU...UUUUA UU UCGUC...CCG-5'@LB@ | |@LB@ 26 9@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -18.1658 kcal/mol@LB@Unfolding Energy - mRNA 6.94606 kcal/mol@LB@Unfolding Energy - sRNA 0.670388 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 10 -- 25@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 17 -- 23@LB@ |
63 |
0.003337 |
0.1851 |
b1453 |
ansP |
-14.01 |
0.047364 |
263 -- 293 |
1 -- 34 |
L-asparagine transporter |
|
_____________262_________________________________294\n_____________|___________________________________|\n5'-GUC...AAUGC________A__________C_________AUG___AAUCGCC-3'\n______________CCACGAAG_GGGG_UAUCA____AAAGCG___GGC\n______________||||:||:_||||_:||||____|||||:___|||\n______________GGUGUUUU_CCCC_GUAGU____UUUCGU___CCG\n3'-UUU...CCCGA________A____U_____UUCU______CA____-5'\n_____________|__________________________________|\n_____________35_________________________________1\n |
263 -- 269 |
28 -- 34 |
-31.7064 kcal/mol |
13.4305 kcal/mol |
4.26884 kcal/mol |
262 294@LB@ | |@LB@5'-GUC...AAUGC A C AUG AAUCGCC-3'@LB@ CCACGAAG GGGG UAUCA AAAGCG GGC@LB@ ||||:||: |||| :|||| |||||: |||@LB@ GGUGUUUU CCCC GUAGU UUUCGU CCG@LB@3'-UUU...CCCGA A U UUCU CA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -31.7064 kcal/mol@LB@Unfolding Energy - mRNA 13.4305 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 263 -- 293@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
80 |
0.004856 |
0.213 |
b1478 |
adhP |
-8.37 |
0.463200 |
263 -- 276 |
48 -- 59 |
ethanol-active dehydrogenase/acetaldehyde-active reductase |
|
_____________262____________277\n_____________|______________|\n5'-GCA...CGCUC_______CA_____AAGCC...GUU-3'\n______________ACUGAAA__UGGCG\n______________||:||||__|||||\n______________UGGCUUU__ACCGC\n3'-UUU...GAACU______________CCCAA...CCG-5'\n_____________|______________|\n_____________60_____________47\n |
263 -- 269 |
53 -- 59 |
-14.4135 kcal/mol |
2.08604 kcal/mol |
3.96136 kcal/mol |
262 277@LB@ | |@LB@5'-GCA...CGCUC CA AAGCC...GUU-3'@LB@ ACUGAAA UGGCG@LB@ ||:|||| |||||@LB@ UGGCUUU ACCGC@LB@3'-UUU...GAACU CCCAA...CCG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -14.4135 kcal/mol@LB@Unfolding Energy - mRNA 2.08604 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 263 -- 276@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 53 -- 59@LB@ |
163 |
0.01202 |
0.2504 |
b1482 |
osmC |
-10.53 |
0.225653 |
203 -- 226 |
1 -- 22 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________202_______________________227\n_____________|_________________________|\n5'-UAG...ACAAU___A___CAU_________CA____ACACU...CGU-3'\n______________GAC_AUC___AAGAAAGGU___GGC\n______________|||_|||___||||||:|:___|||\n______________CUG_UAG___UUCUUUUCG___CCG\n3'-UUU...UACCC_______U___________UCA___-5'\n_____________|________________________|\n_____________23_______________________1\n |
215 -- 221 |
7 -- 13 |
-17.1921 kcal/mol |
5.11752 kcal/mol |
1.54023 kcal/mol |
202 227@LB@ | |@LB@5'-UAG...ACAAU A CAU CA ACACU...CGU-3'@LB@ GAC AUC AAGAAAGGU GGC@LB@ ||| ||| ||||||:|: |||@LB@ CUG UAG UUCUUUUCG CCG@LB@3'-UUU...UACCC U UCA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -17.1921 kcal/mol@LB@Unfolding Energy - mRNA 5.11752 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 7 -- 13@LB@ |
20 |
0.0007622 |
0.1243 |
b1507 |
hipA |
-19.17 |
0.001718 |
1 -- 29 |
1 -- 31 |
inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
|
______________1________________________________30\n______________|________________________________|\n___________5'-________CU___________C___________GAAAA...UAG-3'\n______________CAAAAUGG__GGACG_CAGAG__GAGC__UGGC\n______________||||||||__||||:_||:||__:|||__||||\n______________GUUUUACC__CCUGU_GUUUC__UUCG__ACCG\n3'-UUU...GAGGU_______________A_____UU____UC____-5'\n_____________|________________________________|\n_____________32_______________________________1\n |
2 -- 8 |
24 -- 30 |
-30.0086 kcal/mol |
8.29611 kcal/mol |
2.53929 kcal/mol |
1 30@LB@ | |@LB@ 5'- CU C GAAAA...UAG-3'@LB@ CAAAAUGG GGACG CAGAG GAGC UGGC@LB@ |||||||| ||||: ||:|| :||| ||||@LB@ GUUUUACC CCUGU GUUUC UUCG ACCG@LB@3'-UUU...GAGGU A UU UC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -19.17 kcal/mol@LB@Hybridization Energy -30.0086 kcal/mol@LB@Unfolding Energy - mRNA 8.29611 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 1 -- 29@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 24 -- 30@LB@ |
19 |
0.000738 |
0.1243 |
b1508 |
hipB |
-18.00 |
0.004180 |
266 -- 295 |
1 -- 32 |
antitoxin of HipAB toxin-antitoxin system |
b1299 b1434 |
_____________265________________________________296\n_____________|__________________________________|\n5'-AUG...CGCCA_________CU___________C___________GAAAA-3'\n______________GCAAAAUGG__GGACG_CAGAG__GAGC__UGGC\n______________:||||||||__||||:_||:||__:|||__||||\n______________UGUUUUACC__CCUGU_GUUUC__UUCG__ACCG\n3'-UUU...CGAGG________________A_____UU____UC____-5'\n_____________|_________________________________|\n_____________33________________________________1\n |
268 -- 274 |
24 -- 30 |
-30.0826 kcal/mol |
9.54799 kcal/mol |
2.53929 kcal/mol |
265 296@LB@ | |@LB@5'-AUG...CGCCA CU C GAAAA-3'@LB@ GCAAAAUGG GGACG CAGAG GAGC UGGC@LB@ :|||||||| ||||: ||:|| :||| ||||@LB@ UGUUUUACC CCUGU GUUUC UUCG ACCG@LB@3'-UUU...CGAGG A UU UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -30.0826 kcal/mol@LB@Unfolding Energy - mRNA 9.54799 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 266 -- 295@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 24 -- 30@LB@ |
78 |
0.004634 |
0.2062 |
b1601 |
tqsA |
-18.27 |
0.003423 |
191 -- 205 |
1 -- 25 |
pheromone AI-2 transporter |
|
_____________190_______________________206\n_____________|_________________________|\n5'-AUU...AAAAC_________________________AAAGC...UCA-3'\n______________GGGGACA_________AGCA_UGGC\n______________|||||||_________||||_||||\n______________CCCCUGU_________UCGU_ACCG\n3'-UUU...UUUUA_______AGUUUCUUU____C____-5'\n_____________|________________________|\n_____________26_______________________1\n |
191 -- 197 |
19 -- 25 |
-23.2822 kcal/mol |
2.49324 kcal/mol |
2.51748 kcal/mol |
190 206@LB@ | |@LB@5'-AUU...AAAAC AAAGC...UCA-3'@LB@ GGGGACA AGCA UGGC@LB@ ||||||| |||| ||||@LB@ CCCCUGU UCGU ACCG@LB@3'-UUU...UUUUA AGUUUCUUU C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -18.27 kcal/mol@LB@Hybridization Energy -23.2822 kcal/mol@LB@Unfolding Energy - mRNA 2.49324 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 191 -- 205@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 19 -- 25@LB@ |
46 |
0.002205 |
0.1648 |
b1662 |
ribC |
-17.71 |
0.005126 |
34 -- 61 |
2 -- 29 |
riboflavin synthase alpha subunit |
|
_____________33_____________________________62\n_____________|______________________________|\n5'-UUU...CGCCU_______CA___A_____A___________GAAAU...UGG-3'\n______________GAAUGGG__GCA__AAAG_AGAAGCAG_GG\n______________:||||||__:||__||||_|:||||||_||\n______________UUUACCC__UGU__UUUC_UUUUCGUC_CC\n3'-UUU...GGUGU_______C____AG_____________A__G-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
53 -- 59 |
5 -- 11 |
-25.8778 kcal/mol |
5.65259 kcal/mol |
2.51906 kcal/mol |
33 62@LB@ | |@LB@5'-UUU...CGCCU CA A A GAAAU...UGG-3'@LB@ GAAUGGG GCA AAAG AGAAGCAG GG@LB@ :|||||| :|| |||| |:|||||| ||@LB@ UUUACCC UGU UUUC UUUUCGUC CC@LB@3'-UUU...GGUGU C AG A G-5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -25.8778 kcal/mol@LB@Unfolding Energy - mRNA 5.65259 kcal/mol@LB@Unfolding Energy - sRNA 2.51906 kcal/mol@LB@@LB@Position - mRNA 34 -- 61@LB@Position - sRNA 2 -- 29@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
104 |
0.006761 |
0.2281 |
b1671 |
ydhX |
-13.25 |
0.069212 |
145 -- 167 |
2 -- 25 |
putative 4Fe-4S ferridoxin-type protein; FNR Nar NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
b4072 |
_____________144_______________________168\n_____________|_________________________|\n5'-CAC...UUUCA___A_______U___U_________ACAGU...AGG-3'\n______________GGG_GAUGUCA_GGA__AG_GGUGG\n______________|||_||::|||_:||__||_:||||\n______________CCC_CUGUAGU_UCU__UC_UCACC\n3'-UUU...UUUUA___________U___UU__G_____G-5'\n_____________|_________________________|\n_____________26________________________1\n |
149 -- 155 |
16 -- 22 |
-23.0825 kcal/mol |
7.31216 kcal/mol |
2.51746 kcal/mol |
144 168@LB@ | |@LB@5'-CAC...UUUCA A U U ACAGU...AGG-3'@LB@ GGG GAUGUCA GGA AG GGUGG@LB@ ||| ||::||| :|| || :||||@LB@ CCC CUGUAGU UCU UC UCACC@LB@3'-UUU...UUUUA U UU G G-5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.0825 kcal/mol@LB@Unfolding Energy - mRNA 7.31216 kcal/mol@LB@Unfolding Energy - sRNA 2.51746 kcal/mol@LB@@LB@Position - mRNA 145 -- 167@LB@Position - sRNA 2 -- 25@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 16 -- 22@LB@ |
108 |
0.007234 |
0.2348 |
b1725 |
yniA |
-14.77 |
0.031588 |
182 -- 211 |
1 -- 32 |
fructosamine kinase family protein |
|
_____________181_________________________________212\n_____________|___________________________________|\n5'-GAG...GGCAG____C_____AGA_______UGU____________AAUCA...GGC-3'\n______________ACAA_AUGGG___GACAUCA______GGCA__GGC\n______________||||_|||||___|||||||______:|||__|||\n______________UGUU_UACCC___CUGUAGU______UCGU__CCG\n3'-UUU...CGAGG____U_______________UUCUUU____CA___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
195 -- 201 |
16 -- 22 |
-26.2676 kcal/mol |
8.96188 kcal/mol |
2.53929 kcal/mol |
181 212@LB@ | |@LB@5'-GAG...GGCAG C AGA UGU AAUCA...GGC-3'@LB@ ACAA AUGGG GACAUCA GGCA GGC@LB@ |||| ||||| ||||||| :||| |||@LB@ UGUU UACCC CUGUAGU UCGU CCG@LB@3'-UUU...CGAGG U UUCUUU CA -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.77 kcal/mol@LB@Hybridization Energy -26.2676 kcal/mol@LB@Unfolding Energy - mRNA 8.96188 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 182 -- 211@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 16 -- 22@LB@ |
7 |
0.0001218 |
0.05555 |
b1811 |
yoaH |
-21.30 |
0.000256 |
259 -- 293 |
1 -- 35 |
UPF0181 family protein |
|
_____________258__________________________________294\n_____________|____________________________________|\n5'-ACG...GCGGA____G___C__AU____________U______C___CAGGCAA-3'\n______________UCCA_GAA_UG__GGCA_CAAGGGA_GAGCAG_GGC\n______________||||_:||_||__|:||_|||:|:|_:|||||_|||\n______________AGGU_UUU_AC__CUGU_GUUUCUU_UUCGUC_CCG\n3'-UUU...ACCCG____G___U__CC____A______________A___-5'\n_____________|___________________________________|\n_____________36__________________________________1\n |
276 -- 282 |
11 -- 17 |
-33.9537 kcal/mol |
7.61738 kcal/mol |
5.03645 kcal/mol |
258 294@LB@ | |@LB@5'-ACG...GCGGA G C AU U C CAGGCAA-3'@LB@ UCCA GAA UG GGCA CAAGGGA GAGCAG GGC@LB@ |||| :|| || |:|| |||:|:| :||||| |||@LB@ AGGU UUU AC CUGU GUUUCUU UUCGUC CCG@LB@3'-UUU...ACCCG G U CC A A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -21.30 kcal/mol@LB@Hybridization Energy -33.9537 kcal/mol@LB@Unfolding Energy - mRNA 7.61738 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 259 -- 293@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 11 -- 17@LB@ |
40 |
0.001973 |
0.1648 |
b1823 |
cspC |
-10.89 |
0.196769 |
199 -- 231 |
1 -- 29 |
stress protein member of the CspA-family |
|
_____________198_______________________________232\n_____________|_________________________________|\n5'-UAU...UUUUC______CAA_G________UC____UA______UCAAC...UCU-3'\n______________AAAUGG___A_AUUAAAGG__AGGU__AGUGGU\n______________||||||___|_||:||||:__|:|:__|||||:\n______________UUUACC___U_UAGUUUCU__UUCG__UCACCG\n3'-UUU...GGUGU______CC__G________U_____________-5'\n_____________|________________________________|\n_____________30_______________________________1\n |
210 -- 216 |
13 -- 19 |
-20.1954 kcal/mol |
6.78842 kcal/mol |
2.51907 kcal/mol |
198 232@LB@ | |@LB@5'-UAU...UUUUC CAA G UC UA UCAAC...UCU-3'@LB@ AAAUGG A AUUAAAGG AGGU AGUGGU@LB@ |||||| | ||:||||: |:|: |||||:@LB@ UUUACC U UAGUUUCU UUCG UCACCG@LB@3'-UUU...GGUGU CC G U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -20.1954 kcal/mol@LB@Unfolding Energy - mRNA 6.78842 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 199 -- 231@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 13 -- 19@LB@ |
168 |
0.01219 |
0.2504 |
b1830 |
prc |
-10.01 |
0.273454 |
1 -- 12 |
6 -- 17 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
______________1___________13\n______________|___________|\n___________5'-_______C____CACCC...CGG-3'\n______________CGAAGAA_AGCA\n______________|:|||||_||||\n______________GUUUCUU_UCGU\n3'-UUU...CUGUA_______U____CACCG-5'\n_____________|____________|\n_____________18___________5\n |
1 -- 7 |
11 -- 17 |
-11.3077 kcal/mol |
0.751361 kcal/mol |
0.542636 kcal/mol |
1 13@LB@ | |@LB@ 5'- C CACCC...CGG-3'@LB@ CGAAGAA AGCA@LB@ |:||||| ||||@LB@ GUUUCUU UCGU@LB@3'-UUU...CUGUA U CACCG-5'@LB@ | |@LB@ 18 5@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -11.3077 kcal/mol@LB@Unfolding Energy - mRNA 0.751361 kcal/mol@LB@Unfolding Energy - sRNA 0.542636 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 6 -- 17@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 11 -- 17@LB@ |
60 |
0.003101 |
0.1789 |
b1849 |
purT |
-10.92 |
0.194410 |
188 -- 196 |
17 -- 25 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________187_______197\n_____________|_________|\n5'-UUU...AAUCA_________CGUUA...GUC-3'\n______________GGGGAUAUU\n______________|||||:||:\n______________CCCCUGUAG\n3'-UUU...UUUUA_________UUUCU...CCG-5'\n_____________|_________|\n_____________26________16\n |
190 -- 196 |
17 -- 23 |
-14.1846 kcal/mol |
2.60139 kcal/mol |
0.664736 kcal/mol |
187 197@LB@ | |@LB@5'-UUU...AAUCA CGUUA...GUC-3'@LB@ GGGGAUAUU@LB@ |||||:||:@LB@ CCCCUGUAG@LB@3'-UUU...UUUUA UUUCU...CCG-5'@LB@ | |@LB@ 26 16@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -14.1846 kcal/mol@LB@Unfolding Energy - mRNA 2.60139 kcal/mol@LB@Unfolding Energy - sRNA 0.664736 kcal/mol@LB@@LB@Position - mRNA 188 -- 196@LB@Position - sRNA 17 -- 25@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 17 -- 23@LB@ |
152 |
0.01123 |
0.2504 |
b1872 |
torZ |
-17.40 |
0.006326 |
76 -- 107 |
1 -- 34 |
trimethylamine N-oxide reductase system III catalytic subunit |
b0997 b3551 |
_____________75___________________________________108\n_____________|____________________________________|\n5'-ACG...CAUUG___AA_________________CC_________A__GAAAA...AGA-3'\n______________CCA__GGAAUGGGGGCA_CGAA____AGCA_UG_GC\n______________|||__::|||||||:||_|:||____||||_||_||\n______________GGU__UUUUACCCCUGU_GUUU____UCGU_AC_CG\n3'-UUU...CCCGA___G_____________A____CUUU____C_____-5'\n_____________|___________________________________|\n_____________35__________________________________1\n |
86 -- 92 |
19 -- 25 |
-29.6219 kcal/mol |
7.95271 kcal/mol |
4.26884 kcal/mol |
75 108@LB@ | |@LB@5'-ACG...CAUUG AA CC A GAAAA...AGA-3'@LB@ CCA GGAAUGGGGGCA CGAA AGCA UG GC@LB@ ||| ::|||||||:|| |:|| |||| || ||@LB@ GGU UUUUACCCCUGU GUUU UCGU AC CG@LB@3'-UUU...CCCGA G A CUUU C -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -29.6219 kcal/mol@LB@Unfolding Energy - mRNA 7.95271 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 76 -- 107@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 19 -- 25@LB@ |
150 |
0.01097 |
0.2504 |
b1878 |
flhE |
-16.24 |
0.013409 |
257 -- 279 |
3 -- 25 |
proton seal during flagellar secretion |
|
_____________256_____________________280\n_____________|_______________________|\n5'-CGU...GGGGA________G_C___C________UAGGA...AUC-3'\n______________GGGGAUGU_G_AGG_AAGUAGUG\n______________|||||::|_:_||:_|||:||||\n______________CCCCUGUA_U_UCU_UUCGUCAC\n3'-UUU...UUUUA________G_U___U________CG-5'\n_____________|_______________________|\n_____________26______________________2\n |
273 -- 279 |
3 -- 9 |
-26.0465 kcal/mol |
7.2914 kcal/mol |
2.5166 kcal/mol |
256 280@LB@ | |@LB@5'-CGU...GGGGA G C C UAGGA...AUC-3'@LB@ GGGGAUGU G AGG AAGUAGUG@LB@ |||||::| : ||: |||:||||@LB@ CCCCUGUA U UCU UUCGUCAC@LB@3'-UUU...UUUUA G U U CG-5'@LB@ | |@LB@ 26 2@LB@@LB@@LB@Energy -16.24 kcal/mol@LB@Hybridization Energy -26.0465 kcal/mol@LB@Unfolding Energy - mRNA 7.2914 kcal/mol@LB@Unfolding Energy - sRNA 2.5166 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 3 -- 25@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 3 -- 9@LB@ |
75 |
0.00423 |
0.1979 |
b1917 |
yecC |
-10.99 |
0.188691 |
288 -- 298 |
1 -- 11 |
putative ABC transporter ATPase |
|
_____________287_________299\n_____________|___________|\n5'-CUG...CUGGC___________AA-3'\n______________GAAGUGGUGGC\n______________:|||::|||||\n______________UUUCGUCACCG\n3'-UUU...UUUCU___________-5'\n_____________|__________|\n_____________12_________1\n |
292 -- 298 |
1 -- 7 |
-16.6045 kcal/mol |
4.33348 kcal/mol |
1.27751 kcal/mol |
287 299@LB@ | |@LB@5'-CUG...CUGGC AA-3'@LB@ GAAGUGGUGGC@LB@ :|||::|||||@LB@ UUUCGUCACCG@LB@3'-UUU...UUUCU -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -16.6045 kcal/mol@LB@Unfolding Energy - mRNA 4.33348 kcal/mol@LB@Unfolding Energy - sRNA 1.27751 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
113 |
0.00768 |
0.2368 |
b1923 |
fliC |
-14.29 |
0.040892 |
38 -- 54 |
4 -- 25 |
flagellar filament structural protein (flagellin) |
|
_____________37_____________________55\n_____________|______________________|\n5'-GUU...AAUAA______________________AUUUC...CUU-3'\n______________GGGG____CAGAGAAAAG_AGU\n______________||||____||:|||||||_|||\n______________CCCC____GUUUCUUUUC_UCA\n3'-UUU...UUUUA____UGUA__________G___CCG-5'\n_____________|______________________|\n_____________26_____________________3\n |
45 -- 51 |
8 -- 14 |
-19.9416 kcal/mol |
3.14092 kcal/mol |
2.51306 kcal/mol |
37 55@LB@ | |@LB@5'-GUU...AAUAA AUUUC...CUU-3'@LB@ GGGG CAGAGAAAAG AGU@LB@ |||| ||:||||||| |||@LB@ CCCC GUUUCUUUUC UCA@LB@3'-UUU...UUUUA UGUA G CCG-5'@LB@ | |@LB@ 26 3@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -19.9416 kcal/mol@LB@Unfolding Energy - mRNA 3.14092 kcal/mol@LB@Unfolding Energy - sRNA 2.51306 kcal/mol@LB@@LB@Position - mRNA 38 -- 54@LB@Position - sRNA 4 -- 25@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 8 -- 14@LB@ |
174 |
0.0127 |
0.2504 |
b1960 |
vsr |
-15.05 |
0.027057 |
161 -- 177 |
1 -- 19 |
DNA mismatch endonuclease of very short patch repair |
|
_____________160_________________178\n_____________|___________________|\n5'-UCG...CAAAA______C____________GUUGC...CCG-3'\n______________AUCAAA___AGGCGGUGGC\n______________||||||___|:||:|||||\n______________UAGUUU___UUCGUCACCG\n3'-UUU...CCCUG______CUU__________-5'\n_____________|__________________|\n_____________20_________________1\n |
171 -- 177 |
1 -- 7 |
-22.0844 kcal/mol |
5.58177 kcal/mol |
1.45734 kcal/mol |
160 178@LB@ | |@LB@5'-UCG...CAAAA C GUUGC...CCG-3'@LB@ AUCAAA AGGCGGUGGC@LB@ |||||| |:||:|||||@LB@ UAGUUU UUCGUCACCG@LB@3'-UUU...CCCUG CUU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -22.0844 kcal/mol@LB@Unfolding Energy - mRNA 5.58177 kcal/mol@LB@Unfolding Energy - sRNA 1.45734 kcal/mol@LB@@LB@Position - mRNA 161 -- 177@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 1 -- 7@LB@ |
185 |
0.0132 |
0.2504 |
b2009 |
sbmC |
-15.75 |
0.018057 |
263 -- 294 |
1 -- 27 |
DNA gyrase inhibitor |
|
_____________262______________________________295\n_____________|________________________________|\n5'-CUG...GGCCC_____AACA____G___________UU__A__AGUUGA-3'\n______________GUGGG____GACG_UAAAGAAAGGC__UG_GC\n______________:||||____|||:_:|||||||:||__||_||\n______________UACCC____CUGU_GUUUCUUUUCG__AC_CG\n3'-UUU...UGUUU_____________A___________UC_____-5'\n_____________|_______________________________|\n_____________28______________________________1\n |
281 -- 287 |
7 -- 13 |
-27.1244 kcal/mol |
8.85955 kcal/mol |
2.51867 kcal/mol |
262 295@LB@ | |@LB@5'-CUG...GGCCC AACA G UU A AGUUGA-3'@LB@ GUGGG GACG UAAAGAAAGGC UG GC@LB@ :|||| |||: :|||||||:|| || ||@LB@ UACCC CUGU GUUUCUUUUCG AC CG@LB@3'-UUU...UGUUU A UC -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -15.75 kcal/mol@LB@Hybridization Energy -27.1244 kcal/mol@LB@Unfolding Energy - mRNA 8.85955 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 263 -- 294@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 7 -- 13@LB@ |
50 |
0.002349 |
0.1648 |
b2040 |
rfbD |
-20.63 |
0.000491 |
127 -- 157 |
3 -- 32 |
dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit |
|
_____________126______________________________158\n_____________|________________________________|\n5'-GAU...CCAAU__________UU____AUGU____________CCUAU...CUA-3'\n______________ACAAAAUGGG__GAUA_____GAAAAGUGGUG\n______________||||||||||__||:|_____||||||::|||\n______________UGUUUUACCC__CUGU_____CUUUUCGUCAC\n3'-UUU...CGAGG________________AGUUU___________CG-5'\n_____________|________________________________|\n_____________33_______________________________2\n |
151 -- 157 |
3 -- 9 |
-27.2371 kcal/mol |
4.0691 kcal/mol |
2.53925 kcal/mol |
126 158@LB@ | |@LB@5'-GAU...CCAAU UU AUGU CCUAU...CUA-3'@LB@ ACAAAAUGGG GAUA GAAAAGUGGUG@LB@ |||||||||| ||:| ||||||::|||@LB@ UGUUUUACCC CUGU CUUUUCGUCAC@LB@3'-UUU...CGAGG AGUUU CG-5'@LB@ | |@LB@ 33 2@LB@@LB@@LB@Energy -20.63 kcal/mol@LB@Hybridization Energy -27.2371 kcal/mol@LB@Unfolding Energy - mRNA 4.0691 kcal/mol@LB@Unfolding Energy - sRNA 2.53925 kcal/mol@LB@@LB@Position - mRNA 127 -- 157@LB@Position - sRNA 3 -- 32@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 3 -- 9@LB@ |
162 |
0.012 |
0.2504 |
b2079 |
baeR |
-15.58 |
0.019969 |
182 -- 201 |
6 -- 24 |
response regulator in two-component regulatory system with BaeS |
|
_____________181__________________202\n_____________|____________________|\n5'-CAG...GGAAC_____UUA____________UGACC...CGA-3'\n______________GGGAU___CAGAGAGAAGUA\n______________||||:___||:|||:|||:|\n______________CCCUG___GUUUCUUUUCGU\n3'-UUU...UUUAC_____UA_____________CACCG-5'\n_____________|____________________|\n_____________25___________________5\n |
195 -- 201 |
6 -- 12 |
-20.602 kcal/mol |
4.32458 kcal/mol |
0.702143 kcal/mol |
181 202@LB@ | |@LB@5'-CAG...GGAAC UUA UGACC...CGA-3'@LB@ GGGAU CAGAGAGAAGUA@LB@ ||||: ||:|||:|||:|@LB@ CCCUG GUUUCUUUUCGU@LB@3'-UUU...UUUAC UA CACCG-5'@LB@ | |@LB@ 25 5@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -20.602 kcal/mol@LB@Unfolding Energy - mRNA 4.32458 kcal/mol@LB@Unfolding Energy - sRNA 0.702143 kcal/mol@LB@@LB@Position - mRNA 182 -- 201@LB@Position - sRNA 6 -- 24@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 6 -- 12@LB@ |
92 |
0.005693 |
0.2147 |
b2099 |
yegU |
-12.49 |
0.099484 |
183 -- 197 |
7 -- 22 |
ADP-ribosylglycohydrolase family protein |
|
_____________182______________198\n_____________|________________|\n5'-GUG...GCGUU________________UAAAU...CAC-3'\n______________GACA_CAAGGGGAAGU\n______________||||_|||:|::|||:\n______________CUGU_GUUUCUUUUCG\n3'-UUU...UACCC____A___________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
191 -- 197 |
7 -- 13 |
-15.6094 kcal/mol |
2.53245 kcal/mol |
0.590875 kcal/mol |
182 198@LB@ | |@LB@5'-GUG...GCGUU UAAAU...CAC-3'@LB@ GACA CAAGGGGAAGU@LB@ |||| |||:|::|||:@LB@ CUGU GUUUCUUUUCG@LB@3'-UUU...UACCC A UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -15.6094 kcal/mol@LB@Unfolding Energy - mRNA 2.53245 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
182 |
0.01317 |
0.2504 |
b2101 |
yegW |
-15.40 |
0.022099 |
126 -- 162 |
3 -- 28 |
putative DNA-binding transcriptional regulator |
|
_____________125______________________________________163\n_____________|________________________________________|\n5'-CGG...UCGUU_________________AACGCCUUAAAUAA_________AUAUA...AAA-3'\n______________GAUGGG___AUUAAAGA______________GAAGCAGUG\n______________:|||||___||:|||||______________:||||||||\n______________UUACCC___UAGUUUCU______________UUUCGUCAC\n3'-UUU...GUGUU______CUG_______________________________CG-5'\n_____________|________________________________________|\n_____________29_______________________________________2\n |
156 -- 162 |
3 -- 9 |
-24.3736 kcal/mol |
6.45453 kcal/mol |
2.51813 kcal/mol |
125 163@LB@ | |@LB@5'-CGG...UCGUU AACGCCUUAAAUAA AUAUA...AAA-3'@LB@ GAUGGG AUUAAAGA GAAGCAGUG@LB@ :||||| ||:||||| :||||||||@LB@ UUACCC UAGUUUCU UUUCGUCAC@LB@3'-UUU...GUGUU CUG CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -24.3736 kcal/mol@LB@Unfolding Energy - mRNA 6.45453 kcal/mol@LB@Unfolding Energy - sRNA 2.51813 kcal/mol@LB@@LB@Position - mRNA 126 -- 162@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 3 -- 9@LB@ |
145 |
0.01066 |
0.2504 |
b2153 |
folE |
-11.37 |
0.162147 |
44 -- 68 |
1 -- 21 |
GTP cyclohydrolase I |
|
_____________43________________________69\n_____________|_________________________|\n5'-CUG...UUUUA_____UGCU__U_________C___AAUUA...ACG-3'\n______________ACAUC____GA_GAAAGGCAG_GGC\n______________|||||____:|_||||:||||_|||\n______________UGUAG____UU_CUUUUCGUC_CCG\n3'-UUU...ACCCC___________U_________A___-5'\n_____________|________________________|\n_____________22_______________________1\n |
58 -- 64 |
5 -- 11 |
-23.5216 kcal/mol |
10.6442 kcal/mol |
1.51103 kcal/mol |
43 69@LB@ | |@LB@5'-CUG...UUUUA UGCU U C AAUUA...ACG-3'@LB@ ACAUC GA GAAAGGCAG GGC@LB@ ||||| :| ||||:|||| |||@LB@ UGUAG UU CUUUUCGUC CCG@LB@3'-UUU...ACCCC U A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -23.5216 kcal/mol@LB@Unfolding Energy - mRNA 10.6442 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 44 -- 68@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |
74 |
0.004177 |
0.1979 |
b2155 |
cirA |
-15.75 |
0.017995 |
130 -- 157 |
1 -- 33 |
colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter |
|
_____________129________________________________158\n_____________|__________________________________|\n5'-GGA...CCGUA_________________________U_____A__GAUAA...UGG-3'\n______________CGCAA___GGGGACGU_GAAGAAGA___GUG_GC\n______________|:|||___||||||:|_:|||||:|___|||_||\n______________GUGUU___CCCCUGUA_UUUCUUUU___CAC_CG\n3'-UUU...CCGAG_____UUA________G________CGU______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
144 -- 150 |
9 -- 15 |
-28.6012 kcal/mol |
9.77062 kcal/mol |
3.07861 kcal/mol |
129 158@LB@ | |@LB@5'-GGA...CCGUA U A GAUAA...UGG-3'@LB@ CGCAA GGGGACGU GAAGAAGA GUG GC@LB@ |:||| ||||||:| :|||||:| ||| ||@LB@ GUGUU CCCCUGUA UUUCUUUU CAC CG@LB@3'-UUU...CCGAG UUA G CGU -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -15.75 kcal/mol@LB@Hybridization Energy -28.6012 kcal/mol@LB@Unfolding Energy - mRNA 9.77062 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 130 -- 157@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 9 -- 15@LB@ |
141 |
0.01037 |
0.2504 |
b2161 |
nupX |
-15.31 |
0.023296 |
54 -- 80 |
1 -- 26 |
nucleoside permease |
b2164 |
_____________53____________________________81\n_____________|_____________________________|\n5'-UUG...GGUUC_______UA_________U_______C__GGCUA...GCG-3'\n______________UGGGGAU__GUCGAAGAG__GC_GUG_GC\n______________||||||:__:||:||||:__||_|||_||\n______________ACCCCUG__UAGUUUCUU__CG_CAC_CG\n3'-UUU...GUUUU__________________UU__U______-5'\n_____________|____________________________|\n_____________27___________________________1\n |
65 -- 71 |
11 -- 17 |
-27.7009 kcal/mol |
9.87339 kcal/mol |
2.51842 kcal/mol |
53 81@LB@ | |@LB@5'-UUG...GGUUC UA U C GGCUA...GCG-3'@LB@ UGGGGAU GUCGAAGAG GC GUG GC@LB@ ||||||: :||:||||: || ||| ||@LB@ ACCCCUG UAGUUUCUU CG CAC CG@LB@3'-UUU...GUUUU UU U -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -27.7009 kcal/mol@LB@Unfolding Energy - mRNA 9.87339 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 11 -- 17@LB@ |
155 |
0.01136 |
0.2504 |
b2168 |
fruK |
-7.75 |
0.545043 |
91 -- 105 |
7 -- 22 |
fructose-1-phosphate kinase |
|
_____________90_______________106\n_____________|________________|\n5'-AAA...CACUU________________CAUCG...CCA-3'\n______________GGCGUU_AAGAAAGGU\n______________|:|:|:_||||||:|:\n______________CUGUAG_UUCUUUUCG\n3'-UUU...UACCC______U_________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
99 -- 105 |
7 -- 13 |
-14.0922 kcal/mol |
5.75103 kcal/mol |
0.590875 kcal/mol |
90 106@LB@ | |@LB@5'-AAA...CACUU CAUCG...CCA-3'@LB@ GGCGUU AAGAAAGGU@LB@ |:|:|: ||||||:|:@LB@ CUGUAG UUCUUUUCG@LB@3'-UUU...UACCC U UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -7.75 kcal/mol@LB@Hybridization Energy -14.0922 kcal/mol@LB@Unfolding Energy - mRNA 5.75103 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 91 -- 105@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 7 -- 13@LB@ |
72 |
0.004007 |
0.1953 |
b2175 |
mepS |
-13.55 |
0.059767 |
177 -- 194 |
6 -- 23 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________176________________195\n_____________|__________________|\n5'-CAA...GUUAA____U__________A__AACAA...CAA-3'\n______________GGAC_UCAAGGGAAA_CA\n______________||||_||||:|:|||_||\n______________CCUG_AGUUUCUUUU_GU\n3'-UUU...UUACC____U__________C__CACCG-5'\n_____________|__________________|\n_____________24_________________5\n |
185 -- 191 |
9 -- 15 |
-17.1277 kcal/mol |
2.97845 kcal/mol |
0.599171 kcal/mol |
176 195@LB@ | |@LB@5'-CAA...GUUAA U A AACAA...CAA-3'@LB@ GGAC UCAAGGGAAA CA@LB@ |||| ||||:|:||| ||@LB@ CCUG AGUUUCUUUU GU@LB@3'-UUU...UUACC U C CACCG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.55 kcal/mol@LB@Hybridization Energy -17.1277 kcal/mol@LB@Unfolding Energy - mRNA 2.97845 kcal/mol@LB@Unfolding Energy - sRNA 0.599171 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 9 -- 15@LB@ |
6 |
9.344e-05 |
0.05465 |
b2215 |
ompC |
-14.72 |
0.032428 |
133 -- 159 |
1 -- 28 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________132____________________________160\n_____________|______________________________|\n5'-AUC...UGAUU____A___UUA_____UAU___________AUAAA...AUC-3'\n______________AAUG_GGG___AUCAG______GCAGUGGC\n______________||||_|||___||||:______||||||||\n______________UUAC_CCC___UAGUU______CGUCACCG\n3'-UUU...GUGUU________UG______UCUUUU________-5'\n_____________|_____________________________|\n_____________29____________________________1\n |
153 -- 159 |
1 -- 7 |
-26.8714 kcal/mol |
9.63393 kcal/mol |
2.519 kcal/mol |
132 160@LB@ | |@LB@5'-AUC...UGAUU A UUA UAU AUAAA...AUC-3'@LB@ AAUG GGG AUCAG GCAGUGGC@LB@ |||| ||| ||||: ||||||||@LB@ UUAC CCC UAGUU CGUCACCG@LB@3'-UUU...GUGUU UG UCUUUU -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -26.8714 kcal/mol@LB@Unfolding Energy - mRNA 9.63393 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 133 -- 159@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
35 |
0.00168 |
0.1648 |
b2231 |
gyrA |
-15.33 |
0.023033 |
230 -- 249 |
7 -- 25 |
DNA gyrase (type II topoisomerase) subunit A |
|
_____________229__________________250\n_____________|____________________|\n5'-AGC...ACACC__UCA_______________UGAAG...CGC-3'\n______________GG___ACAUUGAGGAAGAGC\n______________||___||||::|:|||:|||\n______________CC___UGUAGUUUCUUUUCG\n3'-UUU...UUUUA__CC________________UCACCG-5'\n_____________|____________________|\n_____________26___________________6\n |
243 -- 249 |
7 -- 13 |
-19.3394 kcal/mol |
3.30418 kcal/mol |
0.70626 kcal/mol |
229 250@LB@ | |@LB@5'-AGC...ACACC UCA UGAAG...CGC-3'@LB@ GG ACAUUGAGGAAGAGC@LB@ || ||||::|:|||:|||@LB@ CC UGUAGUUUCUUUUCG@LB@3'-UUU...UUUUA CC UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -15.33 kcal/mol@LB@Hybridization Energy -19.3394 kcal/mol@LB@Unfolding Energy - mRNA 3.30418 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 230 -- 249@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 7 -- 13@LB@ |
79 |
0.004643 |
0.2062 |
b2264 |
menD |
-12.62 |
0.093644 |
52 -- 86 |
1 -- 30 |
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase |
|
_____________51_____________________________________87\n_____________|______________________________________|\n5'-CGU...GAGCA_______CAGGAAAUC____A_____C___________UGCGU...GUU-3'\n______________AGAGUGG_________GACA_CAAAG___GGCAG_GGC\n______________|:|:|||_________||||_|||||___:||||_|||\n______________UUUUACC_________CUGU_GUUUC___UCGUC_CCG\n3'-UUU...AGGUG_______C____________A_____UUU_____A___-5'\n_____________|_____________________________________|\n_____________31____________________________________1\n |
52 -- 58 |
24 -- 30 |
-24.8101 kcal/mol |
9.6737 kcal/mol |
2.51911 kcal/mol |
51 87@LB@ | |@LB@5'-CGU...GAGCA CAGGAAAUC A C UGCGU...GUU-3'@LB@ AGAGUGG GACA CAAAG GGCAG GGC@LB@ |:|:||| |||| ||||| :|||| |||@LB@ UUUUACC CUGU GUUUC UCGUC CCG@LB@3'-UUU...AGGUG C A UUU A -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -24.8101 kcal/mol@LB@Unfolding Energy - mRNA 9.6737 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 52 -- 86@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 24 -- 30@LB@ |
197 |
0.0142 |
0.2529 |
b2295 |
yfbV |
-14.79 |
0.031139 |
250 -- 276 |
1 -- 25 |
UPF0208 family inner membrane protein |
|
_____________249_________________________277\n_____________|___________________________|\n5'-AUG...UCGCC_______G__UUACUC____AC_____CGCUG...CGG-3'\n______________GGGGACA_CA______AAAG__GUGGC\n______________|||||||_||______||||__|||||\n______________CCCCUGU_GU______UUUC__CACCG\n3'-UUU...UUUUA_______A__UUCU______GU_____-5'\n_____________|__________________________|\n_____________26_________________________1\n |
250 -- 256 |
19 -- 25 |
-25.4481 kcal/mol |
8.13822 kcal/mol |
2.51748 kcal/mol |
249 277@LB@ | |@LB@5'-AUG...UCGCC G UUACUC AC CGCUG...CGG-3'@LB@ GGGGACA CA AAAG GUGGC@LB@ ||||||| || |||| |||||@LB@ CCCCUGU GU UUUC CACCG@LB@3'-UUU...UUUUA A UUCU GU -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.79 kcal/mol@LB@Hybridization Energy -25.4481 kcal/mol@LB@Unfolding Energy - mRNA 8.13822 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 250 -- 276@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 19 -- 25@LB@ |
2 |
5.107e-11 |
8.961e-08 |
b2314 |
dedD |
-25.37 |
0.000001 |
176 -- 205 |
1 -- 30 |
membrane-anchored periplasmic protein involved in septation |
|
_____________175_____________________________206\n_____________|_______________________________|\n5'-UUG...UCAUG______AUU______________________AAGUA...AUU-3'\n______________GAAGUG___GACG_CGAGGAGAAGCGGUGGC\n______________:||:||___|||:_|:|:||:||||:|||||\n______________UUUUAC___CUGU_GUUUCUUUUCGUCACCG\n3'-UUU...AGGUG______CC_____A_________________-5'\n_____________|______________________________|\n_____________31_____________________________1\n |
199 -- 205 |
1 -- 7 |
-36.5756 kcal/mol |
8.68219 kcal/mol |
2.51911 kcal/mol |
175 206@LB@ | |@LB@5'-UUG...UCAUG AUU AAGUA...AUU-3'@LB@ GAAGUG GACG CGAGGAGAAGCGGUGGC@LB@ :||:|| |||: |:|:||:||||:|||||@LB@ UUUUAC CUGU GUUUCUUUUCGUCACCG@LB@3'-UUU...AGGUG CC A -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -25.37 kcal/mol@LB@Hybridization Energy -36.5756 kcal/mol@LB@Unfolding Energy - mRNA 8.68219 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 176 -- 205@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 1 -- 7@LB@ |
71 |
0.003993 |
0.1953 |
b2347 |
yfdC |
-11.68 |
0.141997 |
251 -- 269 |
1 -- 17 |
putative inner membrane protein |
|
_____________250__________________270\n_____________|____________________|\n5'-GCA...GAGAG_______AAA______C___AAAAA...UCC-3'\n______________CGAAGAA___GAGC_G_GGC\n______________|:|||||___:|||_|_|||\n______________GUUUCUU___UUCG_C_CCG\n3'-UUU...CUGUA______________U_A___-5'\n_____________|___________________|\n_____________18__________________1\n |
251 -- 257 |
11 -- 17 |
-16.1242 kcal/mol |
3.00377 kcal/mol |
1.43853 kcal/mol |
250 270@LB@ | |@LB@5'-GCA...GAGAG AAA C AAAAA...UCC-3'@LB@ CGAAGAA GAGC G GGC@LB@ |:||||| :||| | |||@LB@ GUUUCUU UUCG C CCG@LB@3'-UUU...CUGUA U A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -16.1242 kcal/mol@LB@Unfolding Energy - mRNA 3.00377 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 251 -- 269@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 11 -- 17@LB@ |
146 |
0.01079 |
0.2504 |
b2453 |
eutG |
-16.22 |
0.013596 |
18 -- 37 |
1 -- 22 |
ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
|
_____________17_____________________38\n_____________|______________________|\n5'-GGC...CGCCC_____AUU______________AUUAC...GUC-3'\n______________GGCAU____GAAGGGCAG_GGC\n______________|:|||____|||::||||_|||\n______________CUGUA____CUUUUCGUC_CCG\n3'-UUU...UACCC_____GUUU_________A___-5'\n_____________|_____________________|\n_____________23____________________1\n |
28 -- 34 |
5 -- 11 |
-23.1742 kcal/mol |
5.41796 kcal/mol |
1.54023 kcal/mol |
17 38@LB@ | |@LB@5'-GGC...CGCCC AUU AUUAC...GUC-3'@LB@ GGCAU GAAGGGCAG GGC@LB@ |:||| |||::|||| |||@LB@ CUGUA CUUUUCGUC CCG@LB@3'-UUU...UACCC GUUU A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -23.1742 kcal/mol@LB@Unfolding Energy - mRNA 5.41796 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 18 -- 37@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |
190 |
0.01401 |
0.2529 |
b2478 |
dapA |
-10.08 |
0.266807 |
73 -- 98 |
6 -- 25 |
dihydrodipicolinate synthase |
|
_____________72_________________________99\n_____________|__________________________|\n5'-GGC...UUUAA____UGA____UUCUU__________UAAAA...CCA-3'\n______________GGGG___GUUG_____AAGGAAAGCA\n______________||||___:|::_____|||:||||||\n______________CCCC___UAGU_____UUCUUUUCGU\n3'-UUU...UUUUA____UG____________________CACCG-5'\n_____________|__________________________|\n_____________26_________________________5\n |
92 -- 98 |
6 -- 12 |
-17.2074 kcal/mol |
6.41889 kcal/mol |
0.70636 kcal/mol |
72 99@LB@ | |@LB@5'-GGC...UUUAA UGA UUCUU UAAAA...CCA-3'@LB@ GGGG GUUG AAGGAAAGCA@LB@ |||| :|:: |||:||||||@LB@ CCCC UAGU UUCUUUUCGU@LB@3'-UUU...UUUUA UG CACCG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -17.2074 kcal/mol@LB@Unfolding Energy - mRNA 6.41889 kcal/mol@LB@Unfolding Energy - sRNA 0.70636 kcal/mol@LB@@LB@Position - mRNA 73 -- 98@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 6 -- 12@LB@ |
29 |
0.00125 |
0.1512 |
b2499 |
purM |
-15.92 |
0.016248 |
173 -- 203 |
3 -- 34 |
phosphoribosylaminoimidazole synthetase |
|
_____________172____________________________________204\n_____________|______________________________________|\n5'-UAU...UUCUA_______UAACGC________CC_______________ACCGA...CGC-3'\n______________CCGCAAG______GUGGGGAC_________AAGCAGUG\n______________||:|||:______:|||||||_________||||||||\n______________GGUGUUU______UACCCCUG_________UUCGUCAC\n3'-UUU...CCCGA_____________________UAGUUUCUU________CG-5'\n_____________|______________________________________|\n_____________35_____________________________________2\n |
197 -- 203 |
3 -- 9 |
-29.7141 kcal/mol |
9.52212 kcal/mol |
4.26884 kcal/mol |
172 204@LB@ | |@LB@5'-UAU...UUCUA UAACGC CC ACCGA...CGC-3'@LB@ CCGCAAG GUGGGGAC AAGCAGUG@LB@ ||:|||: :||||||| ||||||||@LB@ GGUGUUU UACCCCUG UUCGUCAC@LB@3'-UUU...CCCGA UAGUUUCUU CG-5'@LB@ | |@LB@ 35 2@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -29.7141 kcal/mol@LB@Unfolding Energy - mRNA 9.52212 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 173 -- 203@LB@Position - sRNA 3 -- 34@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
84 |
0.005241 |
0.2147 |
b2513 |
yfgM |
-12.13 |
0.116945 |
176 -- 204 |
2 -- 26 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________175___________________________205\n_____________|_____________________________|\n5'-GGC...GUUAC____UUAAGG_________G_CAGC____AAAUU...UUG-3'\n______________UGGG______AAGGAGAAG_A____GUGG\n______________||||______||:||:|||_|____||||\n______________ACCC______UUUCUUUUC_U____CACC\n3'-UUU...GUUUU____CUGUAG_________G_________G-5'\n_____________|_____________________________|\n_____________27____________________________1\n |
188 -- 194 |
8 -- 14 |
-19.1762 kcal/mol |
4.53021 kcal/mol |
2.5184 kcal/mol |
175 205@LB@ | |@LB@5'-GGC...GUUAC UUAAGG G CAGC AAAUU...UUG-3'@LB@ UGGG AAGGAGAAG A GUGG@LB@ |||| ||:||:||| | ||||@LB@ ACCC UUUCUUUUC U CACC@LB@3'-UUU...GUUUU CUGUAG G G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -19.1762 kcal/mol@LB@Unfolding Energy - mRNA 4.53021 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 176 -- 204@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 8 -- 14@LB@ |
195 |
0.01413 |
0.2529 |
b2527 |
hscB |
-14.38 |
0.038945 |
62 -- 81 |
1 -- 21 |
HscA co-chaperone J domain-containing protein Hsc56; IscU-specific chaperone HscAB |
|
_____________61____________________82\n_____________|_____________________|\n5'-GGU...CCCGA__________U__________UGCGG...CUG-3'\n______________ACGUCAAAGA_GAGU_GUGGU\n______________||:|||||||_:||:_||||:\n______________UGUAGUUUCU_UUCG_CACCG\n3'-UUU...ACCCC__________U____U_____-5'\n_____________|____________________|\n_____________22___________________1\n |
65 -- 71 |
12 -- 18 |
-23.3701 kcal/mol |
7.47956 kcal/mol |
1.51103 kcal/mol |
61 82@LB@ | |@LB@5'-GGU...CCCGA U UGCGG...CUG-3'@LB@ ACGUCAAAGA GAGU GUGGU@LB@ ||:||||||| :||: ||||:@LB@ UGUAGUUUCU UUCG CACCG@LB@3'-UUU...ACCCC U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -23.3701 kcal/mol@LB@Unfolding Energy - mRNA 7.47956 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 62 -- 81@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 12 -- 18@LB@ |
112 |
0.007494 |
0.2348 |
b2529 |
iscU |
-11.51 |
0.152972 |
152 -- 183 |
2 -- 33 |
iron-sulfur cluster assembly scaffold protein |
|
_____________151______________________________184\n_____________|________________________________|\n5'-UGG...AACAG___C_______CU_____UUAAUC____UC__AAUCA...GGG-3'\n______________CAU_GAAUGGG__CAUCA______GGUA__GG\n______________||:_:||||||__|||||______:|:|__||\n______________GUG_UUUACCC__GUAGU______UCGU__CC\n3'-UUU...CCGAG___U_______CU_____UUCUUU____CA__G-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
156 -- 162 |
23 -- 29 |
-21.7 kcal/mol |
7.11537 kcal/mol |
3.07861 kcal/mol |
151 184@LB@ | |@LB@5'-UGG...AACAG C CU UUAAUC UC AAUCA...GGG-3'@LB@ CAU GAAUGGG CAUCA GGUA GG@LB@ ||: :|||||| ||||| :|:| ||@LB@ GUG UUUACCC GUAGU UCGU CC@LB@3'-UUU...CCGAG U CU UUCUUU CA G-5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 7.11537 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 152 -- 183@LB@Position - sRNA 2 -- 33@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 23 -- 29@LB@ |
39 |
0.001912 |
0.1648 |
b2532 |
trmJ |
-14.54 |
0.035636 |
97 -- 121 |
1 -- 23 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________96________________________122\n_____________|_________________________|\n5'-CGU...UCACU_____________C__G_AAAC___GCAGA...UGU-3'\n______________GGAUGUUAAAGAA_GG_A____GGC\n______________|||::|:||||||_:|_|____|||\n______________CCUGUAGUUUCUU_UC_U____CCG\n3'-UUU...UUACC_____________U__G_CA_____-5'\n_____________|________________________|\n_____________24_______________________1\n |
103 -- 109 |
11 -- 17 |
-19.8008 kcal/mol |
3.67656 kcal/mol |
1.57928 kcal/mol |
96 122@LB@ | |@LB@5'-CGU...UCACU C G AAAC GCAGA...UGU-3'@LB@ GGAUGUUAAAGAA GG A GGC@LB@ |||::|:|||||| :| | |||@LB@ CCUGUAGUUUCUU UC U CCG@LB@3'-UUU...UUACC U G CA -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -19.8008 kcal/mol@LB@Unfolding Energy - mRNA 3.67656 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 97 -- 121@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 11 -- 17@LB@ |
133 |
0.009634 |
0.2504 |
b2551 |
glyA |
-13.83 |
0.051752 |
272 -- 286 |
6 -- 21 |
serine hydroxymethyltransferase |
|
_____________271______________287\n_____________|________________|\n5'-CAA...AAAGU________________CAUCG...UCG-3'\n______________ACGUC_AGGAAGAGCA\n______________||:||_|:|||:||||\n______________UGUAG_UUCUUUUCGU\n3'-UUU...ACCCC_____U__________CACCG-5'\n_____________|________________|\n_____________22_______________5\n |
280 -- 286 |
6 -- 12 |
-16.7043 kcal/mol |
2.28484 kcal/mol |
0.584589 kcal/mol |
271 287@LB@ | |@LB@5'-CAA...AAAGU CAUCG...UCG-3'@LB@ ACGUC AGGAAGAGCA@LB@ ||:|| |:|||:||||@LB@ UGUAG UUCUUUUCGU@LB@3'-UUU...ACCCC U CACCG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -16.7043 kcal/mol@LB@Unfolding Energy - mRNA 2.28484 kcal/mol@LB@Unfolding Energy - sRNA 0.584589 kcal/mol@LB@@LB@Position - mRNA 272 -- 286@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 6 -- 12@LB@ |
16 |
0.0006527 |
0.1243 |
b2563 |
acpS |
-16.60 |
0.010715 |
145 -- 164 |
1 -- 23 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________144_____________________165\n_____________|_______________________|\n5'-GCC...UGACC______G_____U__________AGAAA...GCG-3'\n______________GGAC_U_AAAGA___GCGGUGGC\n______________||||_|_|||||___||:|||||\n______________CCUG_A_UUUCU___CGUCACCG\n3'-UUU...UUACC____U_G_____UUU________-5'\n_____________|______________________|\n_____________24_____________________1\n |
158 -- 164 |
1 -- 7 |
-25.7246 kcal/mol |
7.54829 kcal/mol |
1.57928 kcal/mol |
144 165@LB@ | |@LB@5'-GCC...UGACC G U AGAAA...GCG-3'@LB@ GGAC U AAAGA GCGGUGGC@LB@ |||| | ||||| ||:|||||@LB@ CCUG A UUUCU CGUCACCG@LB@3'-UUU...UUACC U G UUU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -25.7246 kcal/mol@LB@Unfolding Energy - mRNA 7.54829 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 145 -- 164@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 1 -- 7@LB@ |
23 |
0.0008148 |
0.1243 |
b2573 |
rpoE |
-12.22 |
0.112158 |
248 -- 284 |
1 -- 24 |
RNA polymerase sigma E factor |
|
_____________247___________________________________285\n_____________|_____________________________________|\n5'-ACA...CAGAA____G______AAGCCUUUAACUUACU_______C__UAUCA...UGG-3'\n______________GGGA_AUCAGA________________GGUAGUG_GC\n______________||||_||||:|________________:|:||||_||\n______________CCCU_UAGUUU________________UCGUCAC_CG\n3'-UUU...UUUAC____G______CUUU______________________-5'\n_____________|____________________________________|\n_____________25___________________________________1\n |
275 -- 281 |
3 -- 9 |
-22.4239 kcal/mol |
7.75978 kcal/mol |
2.44282 kcal/mol |
247 285@LB@ | |@LB@5'-ACA...CAGAA G AAGCCUUUAACUUACU C UAUCA...UGG-3'@LB@ GGGA AUCAGA GGUAGUG GC@LB@ |||| ||||:| :|:|||| ||@LB@ CCCU UAGUUU UCGUCAC CG@LB@3'-UUU...UUUAC G CUUU -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -22.4239 kcal/mol@LB@Unfolding Energy - mRNA 7.75978 kcal/mol@LB@Unfolding Energy - sRNA 2.44282 kcal/mol@LB@@LB@Position - mRNA 248 -- 284@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 3 -- 9@LB@ |
170 |
0.01232 |
0.2504 |
b2580 |
ung |
-11.45 |
0.156876 |
183 -- 205 |
1 -- 22 |
uracil-DNA-glycosylase |
|
_____________182______________________206\n_____________|________________________|\n5'-UCU...UUGAA_______C________G__A____UAACG...CCG-3'\n______________GAU_UCG_AGGAGAGC_AG_UGGC\n______________||:_||:_||:|:|||_||_||||\n______________CUG_AGU_UCUUUUCG_UC_ACCG\n3'-UUU...UACCC___U___U________________-5'\n_____________|_______________________|\n_____________23______________________1\n |
191 -- 197 |
7 -- 13 |
-20.4372 kcal/mol |
7.45123 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-UCU...UUGAA C G A UAACG...CCG-3'@LB@ GAU UCG AGGAGAGC AG UGGC@LB@ ||: ||: ||:|:||| || ||||@LB@ CUG AGU UCUUUUCG UC ACCG@LB@3'-UUU...UACCC U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -20.4372 kcal/mol@LB@Unfolding Energy - mRNA 7.45123 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
83 |
0.005101 |
0.2147 |
b2610 |
ffh |
-14.32 |
0.040245 |
57 -- 74 |
4 -- 21 |
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
|
_____________56_________________75\n_____________|__________________|\n5'-AGG...GAGCA___AG_____________AUAGC...AAG-3'\n______________AUA__AAAGAGAAGCAGU\n______________|:|__|||||:|||||||\n______________UGU__UUUCUUUUCGUCA\n3'-UUU...ACCCC___AG_____________CCG-5'\n_____________|__________________|\n_____________22_________________3\n |
68 -- 74 |
4 -- 10 |
-18.2522 kcal/mol |
2.42435 kcal/mol |
1.51 kcal/mol |
56 75@LB@ | |@LB@5'-AGG...GAGCA AG AUAGC...AAG-3'@LB@ AUA AAAGAGAAGCAGU@LB@ |:| |||||:|||||||@LB@ UGU UUUCUUUUCGUCA@LB@3'-UUU...ACCCC AG CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -18.2522 kcal/mol@LB@Unfolding Energy - mRNA 2.42435 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 57 -- 74@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 4 -- 10@LB@ |
8 |
0.0001267 |
0.05555 |
b2697 |
alaS |
-16.66 |
0.010303 |
247 -- 274 |
1 -- 35 |
alanyl-tRNA synthetase |
|
_____________246_________________________________275\n_____________|___________________________________|\n5'-CCA...CUUUU_______UAA______________________U__CAGCA...ACG-3'\n______________UCCAUAG____GGGACAUCA______GGUAGU_GC\n______________||||:|:____|||||||||______:|:|||_||\n______________AGGUGUU____CCCUGUAGU______UCGUCA_CG\n3'-UUU...ACCCG_______UUAC_________UUCUUU______C__-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
259 -- 265 |
16 -- 22 |
-29.5579 kcal/mol |
7.86268 kcal/mol |
5.03645 kcal/mol |
246 275@LB@ | |@LB@5'-CCA...CUUUU UAA U CAGCA...ACG-3'@LB@ UCCAUAG GGGACAUCA GGUAGU GC@LB@ ||||:|: ||||||||| :|:||| ||@LB@ AGGUGUU CCCUGUAGU UCGUCA CG@LB@3'-UUU...ACCCG UUAC UUCUUU C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.5579 kcal/mol@LB@Unfolding Energy - mRNA 7.86268 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 247 -- 274@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 16 -- 22@LB@ |
147 |
0.01091 |
0.2504 |
b2720 |
hycF |
-14.84 |
0.030299 |
116 -- 133 |
1 -- 16 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________115________________134\n_____________|__________________|\n5'-CGA...CGUAA___________AA_____GCCGU...CAG-3'\n______________GAAGAAGAGCA__GUGGU\n______________:|||||:||||__||||:\n______________UUUCUUUUCGU__CACCG\n3'-UUU...UGUAG__________________-5'\n_____________|_________________|\n_____________17________________1\n |
120 -- 126 |
6 -- 12 |
-19.8629 kcal/mol |
3.67538 kcal/mol |
1.34555 kcal/mol |
115 134@LB@ | |@LB@5'-CGA...CGUAA AA GCCGU...CAG-3'@LB@ GAAGAAGAGCA GUGGU@LB@ :|||||:|||| ||||:@LB@ UUUCUUUUCGU CACCG@LB@3'-UUU...UGUAG -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -14.84 kcal/mol@LB@Hybridization Energy -19.8629 kcal/mol@LB@Unfolding Energy - mRNA 3.67538 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 116 -- 133@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 6 -- 12@LB@ |
82 |
0.005087 |
0.2147 |
b2741 |
rpoS |
-15.46 |
0.021295 |
2 -- 28 |
1 -- 25 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C___A___ACAA____UU___________AAAAA...AGG-3'\n______________GGG_ACA____GAAG__AAGGCGG_GGC\n______________|||_|||____:|||__||:||:|_|||\n______________CCC_UGU____UUUC__UUUCGUC_CCG\n3'-UUU...UUUUA___C___AG______U________A___-5'\n_____________|___________________________|\n_____________26__________________________1\n |
19 -- 25 |
5 -- 11 |
-23.9329 kcal/mol |
5.95047 kcal/mol |
2.51748 kcal/mol |
1 29@LB@ | |@LB@ 5'-C A ACAA UU AAAAA...AGG-3'@LB@ GGG ACA GAAG AAGGCGG GGC@LB@ ||| ||| :||| ||:||:| |||@LB@ CCC UGU UUUC UUUCGUC CCG@LB@3'-UUU...UUUUA C AG U A -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -15.46 kcal/mol@LB@Hybridization Energy -23.9329 kcal/mol@LB@Unfolding Energy - mRNA 5.95047 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 5 -- 11@LB@ |
127 |
0.009277 |
0.2491 |
b2781 |
mazG |
-12.70 |
0.090074 |
53 -- 69 |
8 -- 24 |
nucleoside triphosphate pyrophosphohydrolase |
|
_____________52________________70\n_____________|_________________|\n5'-UGA...CAAGA__A___A__________AACAG...CGC-3'\n______________GG_GCA_CGAAGAAAGG\n______________||_:||_|:||||||:|\n______________CC_UGU_GUUUCUUUUC\n3'-UUU...UUUAC__C___A__________GUCACCG-5'\n_____________|_________________|\n_____________25________________7\n |
63 -- 69 |
8 -- 14 |
-16.258 kcal/mol |
2.86814 kcal/mol |
0.688982 kcal/mol |
52 70@LB@ | |@LB@5'-UGA...CAAGA A A AACAG...CGC-3'@LB@ GG GCA CGAAGAAAGG@LB@ || :|| |:||||||:|@LB@ CC UGU GUUUCUUUUC@LB@3'-UUU...UUUAC C A GUCACCG-5'@LB@ | |@LB@ 25 7@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -16.258 kcal/mol@LB@Unfolding Energy - mRNA 2.86814 kcal/mol@LB@Unfolding Energy - sRNA 0.688982 kcal/mol@LB@@LB@Position - mRNA 53 -- 69@LB@Position - sRNA 8 -- 24@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 8 -- 14@LB@ |
199 |
0.01447 |
0.2552 |
b2790 |
yqcA |
-9.70 |
0.305430 |
160 -- 205 |
1 -- 31 |
short-chain flavodoxin FMN-binding |
|
_____________159_____________________________________________206\n_____________|_______________________________________________|\n5'-CUA...CGGGU________A__G__AAGUUCCUAAUC________AAAC_________GGAAA...CAA-3'\n______________CAGGAUGG_GA_AU____________CAGGGAGA____GGUA_UGGC\n______________||::||||_||_||____________||::||:|____:|:|_||||\n______________GUUUUACC_CU_UA____________GUUUCUUU____UCGU_ACCG\n3'-UUU...GAGGU________C__G______________________________C____-5'\n_____________|______________________________________________|\n_____________32_____________________________________________1\n |
187 -- 193 |
10 -- 16 |
-23.6635 kcal/mol |
11.4257 kcal/mol |
2.53929 kcal/mol |
159 206@LB@ | |@LB@5'-CUA...CGGGU A G AAGUUCCUAAUC AAAC GGAAA...CAA-3'@LB@ CAGGAUGG GA AU CAGGGAGA GGUA UGGC@LB@ ||::|||| || || ||::||:| :|:| ||||@LB@ GUUUUACC CU UA GUUUCUUU UCGU ACCG@LB@3'-UUU...GAGGU C G C -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -23.6635 kcal/mol@LB@Unfolding Energy - mRNA 11.4257 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 160 -- 205@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 10 -- 16@LB@ |
181 |
0.01309 |
0.2504 |
b2799 |
fucO |
-15.36 |
0.022654 |
183 -- 205 |
1 -- 21 |
L-1 2-propanediol oxidoreductase |
|
_____________182_____________________206\n_____________|_______________________|\n5'-CUU...GUAAA___A__________G_U_A____UAACA...CGC-3'\n______________GCA_CAAGGAGAAG_A_G_UGGC\n______________:||_|||:||:|||_|_|_||||\n______________UGU_GUUUCUUUUC_U_C_ACCG\n3'-UUU...ACCCC___A__________G________-5'\n_____________|______________________|\n_____________22_____________________1\n |
190 -- 196 |
8 -- 14 |
-20.3858 kcal/mol |
3.51699 kcal/mol |
1.51103 kcal/mol |
182 206@LB@ | |@LB@5'-CUU...GUAAA A G U A UAACA...CGC-3'@LB@ GCA CAAGGAGAAG A G UGGC@LB@ :|| |||:||:||| | | ||||@LB@ UGU GUUUCUUUUC U C ACCG@LB@3'-UUU...ACCCC A G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -20.3858 kcal/mol@LB@Unfolding Energy - mRNA 3.51699 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 8 -- 14@LB@ |
130 |
0.009344 |
0.2491 |
b2840 |
ygeA |
-9.74 |
0.301486 |
266 -- 295 |
2 -- 29 |
Asp/Glu_racemase family protein |
|
_____________265____________________________296\n_____________|______________________________|\n5'-AAA...UUGAU_____AA_________C__C___UU_____GCUUC-3'\n______________AAAUG__GGCAUUAAA_AG_GGC__GGUGG\n______________|||||__|:|||:|||_|:_:||__:||||\n______________UUUAC__CUGUAGUUU_UU_UCG__UCACC\n3'-UUU...GGUGU_____CC_________C__U__________G-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
275 -- 281 |
14 -- 20 |
-20.8158 kcal/mol |
8.56062 kcal/mol |
2.51906 kcal/mol |
265 296@LB@ | |@LB@5'-AAA...UUGAU AA C C UU GCUUC-3'@LB@ AAAUG GGCAUUAAA AG GGC GGUGG@LB@ ||||| |:|||:||| |: :|| :||||@LB@ UUUAC CUGUAGUUU UU UCG UCACC@LB@3'-UUU...GGUGU CC C U G-5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -20.8158 kcal/mol@LB@Unfolding Energy - mRNA 8.56062 kcal/mol@LB@Unfolding Energy - sRNA 2.51906 kcal/mol@LB@@LB@Position - mRNA 266 -- 295@LB@Position - sRNA 2 -- 29@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 14 -- 20@LB@ |
115 |
0.007886 |
0.2401 |
b2890 |
lysS |
-11.64 |
0.144658 |
161 -- 186 |
1 -- 20 |
lysine tRNA synthetase constitutive |
b4129 |
_____________160_________________________187\n_____________|___________________________|\n5'-AAA...CAAUU________CAAGUUU____________UAUGA...GGA-3'\n______________UAUCGAAG_______GAAAGCAG_GGU\n______________:|||:|||_______:|||||||_||:\n______________GUAGUUUC_______UUUUCGUC_CCG\n3'-UUU...CCCCU_______________________A___-5'\n_____________|__________________________|\n_____________21_________________________1\n |
177 -- 183 |
5 -- 11 |
-18.6981 kcal/mol |
5.60124 kcal/mol |
1.45855 kcal/mol |
160 187@LB@ | |@LB@5'-AAA...CAAUU CAAGUUU UAUGA...GGA-3'@LB@ UAUCGAAG GAAAGCAG GGU@LB@ :|||:||| :||||||| ||:@LB@ GUAGUUUC UUUUCGUC CCG@LB@3'-UUU...CCCCU A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -18.6981 kcal/mol@LB@Unfolding Energy - mRNA 5.60124 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 161 -- 186@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 5 -- 11@LB@ |
184 |
0.0132 |
0.2504 |
b2897 |
sdhE |
-10.91 |
0.194803 |
203 -- 220 |
7 -- 23 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________202________________221\n_____________|__________________|\n5'-GUA...AAGAU_________CAAC_____CCGCA...ACA-3'\n______________GGACAUUAA____AAAGC\n______________||||||:||____|||||\n______________CCUGUAGUU____UUUCG\n3'-UUU...UUACC_________UCU______UCACCG-5'\n_____________|__________________|\n_____________24_________________6\n |
205 -- 211 |
15 -- 21 |
-14.6885 kcal/mol |
3.17611 kcal/mol |
0.599063 kcal/mol |
202 221@LB@ | |@LB@5'-GUA...AAGAU CAAC CCGCA...ACA-3'@LB@ GGACAUUAA AAAGC@LB@ ||||||:|| |||||@LB@ CCUGUAGUU UUUCG@LB@3'-UUU...UUACC UCU UCACCG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -14.6885 kcal/mol@LB@Unfolding Energy - mRNA 3.17611 kcal/mol@LB@Unfolding Energy - sRNA 0.599063 kcal/mol@LB@@LB@Position - mRNA 203 -- 220@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 15 -- 21@LB@ |
57 |
0.003017 |
0.1789 |
b2950 |
yggR |
-13.19 |
0.071427 |
205 -- 223 |
1 -- 21 |
putative PilT family AAA+ ATPase |
|
_____________204___________________224\n_____________|_____________________|\n5'-UUC...UAUGA____G_______UU_______CCUUA...GAA-3'\n______________AUAU_GAAGAAA____GUGGC\n______________|:||_:||||||____|||||\n______________UGUA_UUUCUUU____CACCG\n3'-UUU...ACCCC____G_______UCGU_____-5'\n_____________|____________________|\n_____________22___________________1\n |
210 -- 216 |
10 -- 16 |
-17.7325 kcal/mol |
3.03326 kcal/mol |
1.51103 kcal/mol |
204 224@LB@ | |@LB@5'-UUC...UAUGA G UU CCUUA...GAA-3'@LB@ AUAU GAAGAAA GUGGC@LB@ |:|| :|||||| |||||@LB@ UGUA UUUCUUU CACCG@LB@3'-UUU...ACCCC G UCGU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -17.7325 kcal/mol@LB@Unfolding Energy - mRNA 3.03326 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 205 -- 223@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 10 -- 16@LB@ |
117 |
0.008014 |
0.2404 |
b3052 |
hldE |
-12.77 |
0.087254 |
132 -- 161 |
1 -- 30 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________131______________________________162\n_____________|________________________________|\n5'-GCG...UGGCA_______CUG___G_____AU___________AUUAU...CGC-3'\n______________GAAGUGG____GU_GAAGA__GAAGUA_UGGU\n______________:||:|||____:|_:||||__:|||:|_|||:\n______________UUUUACC____UA_UUUCU__UUUCGU_ACCG\n3'-UUU...AGGUG_______CCUG__G_____________C____-5'\n_____________|_______________________________|\n_____________31______________________________1\n |
132 -- 138 |
24 -- 30 |
-21.0542 kcal/mol |
5.76621 kcal/mol |
2.51911 kcal/mol |
131 162@LB@ | |@LB@5'-GCG...UGGCA CUG G AU AUUAU...CGC-3'@LB@ GAAGUGG GU GAAGA GAAGUA UGGU@LB@ :||:||| :| :|||| :|||:| |||:@LB@ UUUUACC UA UUUCU UUUCGU ACCG@LB@3'-UUU...AGGUG CCUG G C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -21.0542 kcal/mol@LB@Unfolding Energy - mRNA 5.76621 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 132 -- 161@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 24 -- 30@LB@ |
21 |
0.0007937 |
0.1243 |
b3055 |
ygiM |
-17.78 |
0.004866 |
75 -- 99 |
1 -- 23 |
SH3 domain protein |
|
_____________74________________________100\n_____________|_________________________|\n5'-GGC...UUGAC______A____UUU___________AAGAC...AUA-3'\n______________GGGCGU_AAAG___GAAGCAGUGGC\n______________||:|:|_||||___:||||||||||\n______________CCUGUA_UUUC___UUUCGUCACCG\n3'-UUU...UUACC______G____U_____________-5'\n_____________|________________________|\n_____________24_______________________1\n |
93 -- 99 |
1 -- 7 |
-29.8569 kcal/mol |
10.4968 kcal/mol |
1.57928 kcal/mol |
74 100@LB@ | |@LB@5'-GGC...UUGAC A UUU AAGAC...AUA-3'@LB@ GGGCGU AAAG GAAGCAGUGGC@LB@ ||:|:| |||| :||||||||||@LB@ CCUGUA UUUC UUUCGUCACCG@LB@3'-UUU...UUACC G U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -17.78 kcal/mol@LB@Hybridization Energy -29.8569 kcal/mol@LB@Unfolding Energy - mRNA 10.4968 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 75 -- 99@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 1 -- 7@LB@ |
175 |
0.01275 |
0.2504 |
b3057 |
bacA |
-10.43 |
0.234919 |
238 -- 261 |
5 -- 26 |
undecaprenyl pyrophosphate phosphatase |
|
_____________237______________________262\n_____________|________________________|\n5'-UUC...AAUAU____U_UG_________UU_A___AAUUU...UUG-3'\n______________UGGG_G__GUCGAAGGA__G_CAG\n______________||||_|__:||:|||:|__|_|||\n______________ACCC_C__UAGUUUCUU__C_GUC\n3'-UUU...GUUUU______UG_________UU_____ACCG-5'\n_____________|________________________|\n_____________27_______________________4\n |
248 -- 254 |
11 -- 17 |
-20.3624 kcal/mol |
7.43347 kcal/mol |
2.50108 kcal/mol |
237 262@LB@ | |@LB@5'-UUC...AAUAU U UG UU A AAUUU...UUG-3'@LB@ UGGG G GUCGAAGGA G CAG@LB@ |||| | :||:|||:| | |||@LB@ ACCC C UAGUUUCUU C GUC@LB@3'-UUU...GUUUU UG UU ACCG-5'@LB@ | |@LB@ 27 4@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -20.3624 kcal/mol@LB@Unfolding Energy - mRNA 7.43347 kcal/mol@LB@Unfolding Energy - sRNA 2.50108 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 5 -- 26@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 11 -- 17@LB@ |
68 |
0.003723 |
0.191 |
b3131 |
agaR |
-11.10 |
0.180958 |
280 -- 299 |
5 -- 22 |
transcriptional repressor of the aga regulon |
|
_____________279__________________300\n_____________|____________________|\n5'-CAG...UCUGC____G________UGU____G-3'\n______________GACA_CAAGGGAG___GCAG\n______________||||_|||:|:|:___||||\n______________CUGU_GUUUCUUU___CGUC\n3'-UUU...UACCC____A________U______ACCG-5'\n_____________|____________________|\n_____________23___________________4\n |
286 -- 292 |
10 -- 16 |
-17.5345 kcal/mol |
4.90034 kcal/mol |
1.53637 kcal/mol |
279 300@LB@ | |@LB@5'-CAG...UCUGC G UGU G-3'@LB@ GACA CAAGGGAG GCAG@LB@ |||| |||:|:|: ||||@LB@ CUGU GUUUCUUU CGUC@LB@3'-UUU...UACCC A U ACCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -17.5345 kcal/mol@LB@Unfolding Energy - mRNA 4.90034 kcal/mol@LB@Unfolding Energy - sRNA 1.53637 kcal/mol@LB@@LB@Position - mRNA 280 -- 299@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 10 -- 16@LB@ |
139 |
0.01022 |
0.2504 |
b3163 |
nlpI |
-13.31 |
0.067339 |
19 -- 42 |
4 -- 21 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
_____________18_______________________43\n_____________|________________________|\n5'-AGG...UCUGA___________GCGACU_______CUCAA...CAU-3'\n______________GCAUUAAAGAA______GAGCAGU\n______________:|||:||||||______:||||||\n______________UGUAGUUUCUU______UUCGUCA\n3'-UUU...ACCCC________________________CCG-5'\n_____________|________________________|\n_____________22_______________________3\n |
36 -- 42 |
4 -- 10 |
-18.4935 kcal/mol |
3.67449 kcal/mol |
1.51 kcal/mol |
18 43@LB@ | |@LB@5'-AGG...UCUGA GCGACU CUCAA...CAU-3'@LB@ GCAUUAAAGAA GAGCAGU@LB@ :|||:|||||| :||||||@LB@ UGUAGUUUCUU UUCGUCA@LB@3'-UUU...ACCCC CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -18.4935 kcal/mol@LB@Unfolding Energy - mRNA 3.67449 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 19 -- 42@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 4 -- 10@LB@ |
47 |
0.002271 |
0.1648 |
b3169 |
nusA |
-13.61 |
0.058009 |
55 -- 79 |
4 -- 28 |
transcription termination/antitermination L factor |
|
_____________54__________________________80\n_____________|___________________________|\n5'-UUG...UCGUA_____CA________UC__________AGACG...CAG-3'\n______________AAUGG__GGGCGUUA____AAAGCGGU\n______________|||||__||:|:|:|____|||||:||\n______________UUACC__CCUGUAGU____UUUCGUCA\n3'-UUU...GUGUU_______________UUCU________CCG-5'\n_____________|___________________________|\n_____________29__________________________3\n |
73 -- 79 |
4 -- 10 |
-21.8237 kcal/mol |
5.69952 kcal/mol |
2.51457 kcal/mol |
54 80@LB@ | |@LB@5'-UUG...UCGUA CA UC AGACG...CAG-3'@LB@ AAUGG GGGCGUUA AAAGCGGU@LB@ ||||| ||:|:|:| |||||:||@LB@ UUACC CCUGUAGU UUUCGUCA@LB@3'-UUU...GUGUU UUCU CCG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -21.8237 kcal/mol@LB@Unfolding Energy - mRNA 5.69952 kcal/mol@LB@Unfolding Energy - sRNA 2.51457 kcal/mol@LB@@LB@Position - mRNA 55 -- 79@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
12 |
0.0004023 |
0.1087 |
b3176 |
glmM |
-16.74 |
0.009770 |
131 -- 153 |
1 -- 22 |
phosphoglucosamine mutase |
|
_____________130_____________________154\n_____________|_______________________|\n5'-GUU...UUCAU_____________CC____AA__GAUGC...CGG-3'\n______________GACGUCAAAGAAA__GUAG__GC\n______________|||:|||||||||__|:||__||\n______________CUGUAGUUUCUUU__CGUC__CG\n3'-UUU...UACCC_____________U_____AC__-5'\n_____________|______________________|\n_____________23_____________________1\n |
137 -- 143 |
10 -- 16 |
-21.6768 kcal/mol |
3.39473 kcal/mol |
1.54023 kcal/mol |
130 154@LB@ | |@LB@5'-GUU...UUCAU CC AA GAUGC...CGG-3'@LB@ GACGUCAAAGAAA GUAG GC@LB@ |||:||||||||| |:|| ||@LB@ CUGUAGUUUCUUU CGUC CG@LB@3'-UUU...UACCC U AC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -16.74 kcal/mol@LB@Hybridization Energy -21.6768 kcal/mol@LB@Unfolding Energy - mRNA 3.39473 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 131 -- 153@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 10 -- 16@LB@ |
38 |
0.001836 |
0.1648 |
b3188 |
sfsB |
-13.60 |
0.058336 |
253 -- 274 |
1 -- 32 |
malPQ operon transcriptional activator |
|
_____________252______________________________275\n_____________|________________________________|\n5'-CGG...UUUGC______A___A_____________________GGCGG...UGA-3'\n______________GCAAGA_GGG_ACGUCAA__________UGGC\n______________:|||:|_|||_||:||||__________||||\n______________UGUUUU_CCC_UGUAGUU__________ACCG\n3'-UUU...CGAGG______A___C_______UCUUUUCGUC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
264 -- 270 |
15 -- 21 |
-21.5209 kcal/mol |
5.38314 kcal/mol |
2.53929 kcal/mol |
252 275@LB@ | |@LB@5'-CGG...UUUGC A A GGCGG...UGA-3'@LB@ GCAAGA GGG ACGUCAA UGGC@LB@ :|||:| ||| ||:|||| ||||@LB@ UGUUUU CCC UGUAGUU ACCG@LB@3'-UUU...CGAGG A C UCUUUUCGUC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -21.5209 kcal/mol@LB@Unfolding Energy - mRNA 5.38314 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 253 -- 274@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 15 -- 21@LB@ |
76 |
0.004413 |
0.2038 |
b3211 |
yhcC |
-9.63 |
0.312909 |
148 -- 162 |
49 -- 62 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________147_____________163\n_____________|_______________|\n5'-UGC...CGAAU______AA_______AGGCU...GCC-3'\n______________UGAGCU__AAAUGGC\n______________|||:|:__|||||||\n______________ACUUGG__UUUACCG\n3'-UUU...UUGGA______C________CCCCA...CCG-5'\n_____________|_______________|\n_____________63______________48\n |
156 -- 162 |
49 -- 55 |
-15.5959 kcal/mol |
2.00852 kcal/mol |
3.95968 kcal/mol |
147 163@LB@ | |@LB@5'-UGC...CGAAU AA AGGCU...GCC-3'@LB@ UGAGCU AAAUGGC@LB@ |||:|: |||||||@LB@ ACUUGG UUUACCG@LB@3'-UUU...UUGGA C CCCCA...CCG-5'@LB@ | |@LB@ 63 48@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -15.5959 kcal/mol@LB@Unfolding Energy - mRNA 2.00852 kcal/mol@LB@Unfolding Energy - sRNA 3.95968 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 49 -- 62@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 49 -- 55@LB@ |
149 |
0.01096 |
0.2504 |
b3230 |
rpsI |
-12.23 |
0.111717 |
165 -- 205 |
1 -- 34 |
30S ribosomal subunit protein S9 |
|
_____________164_______________________________________206\n_____________|_________________________________________|\n5'-GUG...AGCAA_______UUCUU______UAAUC____UUAU_____A____UGAAA...GUU-3'\n______________CCGCAAG_____GACAUC_____GGGA____AGGCA_UGGC\n______________||:|||:_____||||||_____:|:|____|:|||_||||\n______________GGUGUUU_____CUGUAG_____UCUU____UUCGU_ACCG\n3'-UUU...CCCGA_______UACCC______UU________________C____-5'\n_____________|________________________________________|\n_____________35_______________________________________1\n |
165 -- 171 |
28 -- 34 |
-26.3465 kcal/mol |
9.84752 kcal/mol |
4.26884 kcal/mol |
164 206@LB@ | |@LB@5'-GUG...AGCAA UUCUU UAAUC UUAU A UGAAA...GUU-3'@LB@ CCGCAAG GACAUC GGGA AGGCA UGGC@LB@ ||:|||: |||||| :|:| |:||| ||||@LB@ GGUGUUU CUGUAG UCUU UUCGU ACCG@LB@3'-UUU...CCCGA UACCC UU C -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -26.3465 kcal/mol@LB@Unfolding Energy - mRNA 9.84752 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 165 -- 205@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 28 -- 34@LB@ |
123 |
0.008923 |
0.2491 |
b3243 |
aaeR |
-15.21 |
0.024673 |
72 -- 99 |
1 -- 34 |
transcriptional regulator for aaeXAB operon |
|
_____________71_________________________________100\n_____________|__________________________________|\n5'-AAC...UGUCG________AA__________________C_____GAGAG...UCA-3'\n______________CCGCAGAG___GGGCAU____GGAAAGC_G_GGC\n______________||:||:|:___||:|||____|:|||||_|_|||\n______________GGUGUUUU___CCUGUA____CUUUUCG_C_CCG\n3'-UUU...CCCGA________ACC______GUUU_______U_A___-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
88 -- 94 |
7 -- 13 |
-28.4227 kcal/mol |
8.94529 kcal/mol |
4.26884 kcal/mol |
71 100@LB@ | |@LB@5'-AAC...UGUCG AA C GAGAG...UCA-3'@LB@ CCGCAGAG GGGCAU GGAAAGC G GGC@LB@ ||:||:|: ||:||| |:||||| | |||@LB@ GGUGUUUU CCUGUA CUUUUCG C CCG@LB@3'-UUU...CCCGA ACC GUUU U A -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -28.4227 kcal/mol@LB@Unfolding Energy - mRNA 8.94529 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 72 -- 99@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 7 -- 13@LB@ |
140 |
0.01029 |
0.2504 |
b3247 |
rng |
-10.20 |
0.255190 |
49 -- 63 |
1 -- 14 |
ribonuclease G |
|
_____________48______________64\n_____________|_______________|\n5'-GUU...CCGUU___U_______GU__AUACG...CGC-3'\n______________AGA_AAAGCAG__GC\n______________|||_|||||||__||\n______________UCU_UUUCGUC__CG\n3'-UUU...UAGUU___________AC__-5'\n_____________|______________|\n_____________15_____________1\n |
53 -- 59 |
5 -- 11 |
-13.7724 kcal/mol |
2.22711 kcal/mol |
1.34059 kcal/mol |
48 64@LB@ | |@LB@5'-GUU...CCGUU U GU AUACG...CGC-3'@LB@ AGA AAAGCAG GC@LB@ ||| ||||||| ||@LB@ UCU UUUCGUC CG@LB@3'-UUU...UAGUU AC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -13.7724 kcal/mol@LB@Unfolding Energy - mRNA 2.22711 kcal/mol@LB@Unfolding Energy - sRNA 1.34059 kcal/mol@LB@@LB@Position - mRNA 49 -- 63@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
55 |
0.002823 |
0.1778 |
b3319 |
rplD |
-12.54 |
0.096993 |
18 -- 45 |
1 -- 32 |
50S ribosomal subunit protein L4 |
|
_____________17________________________________46\n_____________|_________________________________|\n5'-UCA...UCCGG________U____________C___AAAA____AGGUC...UUG-3'\n______________GCAAAGUG______UCAAAGG_AAG____UGGC\n______________:||||:||______||||||:_|||____||||\n______________UGUUUUAC______AGUUUCU_UUC____ACCG\n3'-UUU...CGAGG________CCCUGU_______U___GUC_____-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
27 -- 33 |
12 -- 18 |
-19.13 kcal/mol |
4.04955 kcal/mol |
2.53929 kcal/mol |
17 46@LB@ | |@LB@5'-UCA...UCCGG U C AAAA AGGUC...UUG-3'@LB@ GCAAAGUG UCAAAGG AAG UGGC@LB@ :||||:|| ||||||: ||| ||||@LB@ UGUUUUAC AGUUUCU UUC ACCG@LB@3'-UUU...CGAGG CCCUGU U GUC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.54 kcal/mol@LB@Hybridization Energy -19.13 kcal/mol@LB@Unfolding Energy - mRNA 4.04955 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 18 -- 45@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 12 -- 18@LB@ |
44 |
0.002166 |
0.1648 |
b3349 |
slyD |
-19.18 |
0.001707 |
20 -- 41 |
5 -- 23 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________19_____________________42\n_____________|______________________|\n5'-UGU...AGUGC__________UGC_________ACAAA...ACU-3'\n______________GGACAUCAGA___GAGAAGCAG\n______________||||||||:|___||:||||||\n______________CCUGUAGUUU___CUUUUCGUC\n3'-UUU...UUACC______________________ACCG-5'\n_____________|______________________|\n_____________24_____________________4\n |
35 -- 41 |
5 -- 11 |
-25.7728 kcal/mol |
5.01574 kcal/mol |
1.57523 kcal/mol |
19 42@LB@ | |@LB@5'-UGU...AGUGC UGC ACAAA...ACU-3'@LB@ GGACAUCAGA GAGAAGCAG@LB@ ||||||||:| ||:||||||@LB@ CCUGUAGUUU CUUUUCGUC@LB@3'-UUU...UUACC ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -19.18 kcal/mol@LB@Hybridization Energy -25.7728 kcal/mol@LB@Unfolding Energy - mRNA 5.01574 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 20 -- 41@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 5 -- 11@LB@ |
56 |
0.002838 |
0.1778 |
b3371 |
frlB |
-17.11 |
0.007704 |
196 -- 228 |
2 -- 32 |
fructoselysine-6-P-deglycase |
|
_____________195________________________________229\n_____________|__________________________________|\n5'-ACU...AGAAA________UU_________U________CC____ACUUU...ACG-3'\n______________AUAAAAUG__GGAUAUUGA__AAAAGCA__GUGG\n______________|:||||||__|||:||::|__|||||||__||||\n______________UGUUUUAC__CCUGUAGUU__UUUUCGU__CACC\n3'-UUU...CGAGG________C__________UC_____________G-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
216 -- 222 |
6 -- 12 |
-25.2618 kcal/mol |
5.61622 kcal/mol |
2.53929 kcal/mol |
195 229@LB@ | |@LB@5'-ACU...AGAAA UU U CC ACUUU...ACG-3'@LB@ AUAAAAUG GGAUAUUGA AAAAGCA GUGG@LB@ |:|||||| |||:||::| ||||||| ||||@LB@ UGUUUUAC CCUGUAGUU UUUUCGU CACC@LB@3'-UUU...CGAGG C UC G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -25.2618 kcal/mol@LB@Unfolding Energy - mRNA 5.61622 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 228@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 6 -- 12@LB@ |
169 |
0.01228 |
0.2504 |
b3386 |
rpe |
-13.36 |
0.065831 |
171 -- 203 |
3 -- 33 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________170_______________________________204\n_____________|_________________________________|\n5'-CGC...UCACC_______AAAUAAUUC______________A__AAACA...UGC-3'\n______________CGCGAAA_________UCAAGGAGAAGCGG_UG\n______________|:|:|||_________||||:||:||||:|_||\n______________GUGUUUU_________AGUUUCUUUUCGUC_AC\n3'-UUU...CCGAG_______ACCCCUGU__________________CG-5'\n_____________|_________________________________|\n_____________34________________________________2\n |
194 -- 200 |
5 -- 11 |
-23.2607 kcal/mol |
6.82691 kcal/mol |
3.0786 kcal/mol |
170 204@LB@ | |@LB@5'-CGC...UCACC AAAUAAUUC A AAACA...UGC-3'@LB@ CGCGAAA UCAAGGAGAAGCGG UG@LB@ |:|:||| ||||:||:||||:| ||@LB@ GUGUUUU AGUUUCUUUUCGUC AC@LB@3'-UUU...CCGAG ACCCCUGU CG-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -23.2607 kcal/mol@LB@Unfolding Energy - mRNA 6.82691 kcal/mol@LB@Unfolding Energy - sRNA 3.0786 kcal/mol@LB@@LB@Position - mRNA 171 -- 203@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
45 |
0.002187 |
0.1648 |
b3391 |
hofQ |
-14.99 |
0.027914 |
2 -- 20 |
1 -- 20 |
DNA catabolic putative fimbrial transporter |
|
_____________1____________________21\n_____________|____________________|\n__________5'-C__________U_________GAGGC...UAG-3'\n______________UAUCAGGGGA_GGUAG_GGC\n______________:||||::|:|_:|:||_|||\n______________GUAGUUUCUU_UCGUC_CCG\n3'-UUU...CCCCU__________U_____A___-5'\n_____________|___________________|\n_____________21__________________1\n |
5 -- 11 |
11 -- 17 |
-22.4478 kcal/mol |
5.99969 kcal/mol |
1.45855 kcal/mol |
1 21@LB@ | |@LB@ 5'-C U GAGGC...UAG-3'@LB@ UAUCAGGGGA GGUAG GGC@LB@ :||||::|:| :|:|| |||@LB@ GUAGUUUCUU UCGUC CCG@LB@3'-UUU...CCCCU U A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -22.4478 kcal/mol@LB@Unfolding Energy - mRNA 5.99969 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 2 -- 20@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
118 |
0.008241 |
0.2451 |
b3394 |
hofN |
-17.25 |
0.007000 |
1 -- 22 |
2 -- 26 |
DNA catabolic putative fimbrial assembly protein |
|
______________1________________________23\n______________|________________________|\n___________5'-_____________CU__________GGAUG...CCG-3'\n______________UGGGGGCG_CAAA____GGCGGUGG\n______________|||||:|:_||||____:||:||||\n______________ACCCCUGU_GUUU____UCGUCACC\n3'-UUU...GUUUU________A____CUUU________G-5'\n_____________|_________________________|\n_____________27________________________1\n |
16 -- 22 |
2 -- 8 |
-29.7277 kcal/mol |
9.95926 kcal/mol |
2.5184 kcal/mol |
1 23@LB@ | |@LB@ 5'- CU GGAUG...CCG-3'@LB@ UGGGGGCG CAAA GGCGGUGG@LB@ |||||:|: |||| :||:||||@LB@ ACCCCUGU GUUU UCGUCACC@LB@3'-UUU...GUUUU A CUUU G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -17.25 kcal/mol@LB@Hybridization Energy -29.7277 kcal/mol@LB@Unfolding Energy - mRNA 9.95926 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 1 -- 22@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 2 -- 8@LB@ |
89 |
0.005593 |
0.2147 |
b3398 |
yrfF |
-14.72 |
0.032340 |
186 -- 206 |
1 -- 31 |
putative RcsCDB-response attenuator inner membrane protein |
|
_____________185______________________________207\n_____________|________________________________|\n5'-UUA...CUAAG_____________________________A__ACCAU...GGA-3'\n______________UAAGAUGGGGA__________AAGCA_UG_GC\n______________:||:|||||||__________|||||_||_||\n______________GUUUUACCCCU__________UUCGU_AC_CG\n3'-UUU...GAGGU___________GUAGUUUCUU_____C_____-5'\n_____________|_______________________________|\n_____________32______________________________1\n |
190 -- 196 |
21 -- 27 |
-21.8606 kcal/mol |
4.59782 kcal/mol |
2.53929 kcal/mol |
185 207@LB@ | |@LB@5'-UUA...CUAAG A ACCAU...GGA-3'@LB@ UAAGAUGGGGA AAGCA UG GC@LB@ :||:||||||| ||||| || ||@LB@ GUUUUACCCCU UUCGU AC CG@LB@3'-UUU...GAGGU GUAGUUUCUU C -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -21.8606 kcal/mol@LB@Unfolding Energy - mRNA 4.59782 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 186 -- 206@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 21 -- 27@LB@ |
154 |
0.01125 |
0.2504 |
b3412 |
bioH |
-12.84 |
0.084220 |
262 -- 288 |
1 -- 28 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________261__________________________289\n_____________|____________________________|\n5'-GGC...GCACG_________UGAAUGCC___________GUUGC...ACG-3'\n______________GAUGGGGAC________GAAGU_GUGGC\n______________:||||||||________:|||:_|||||\n______________UUACCCCUG________UUUCG_CACCG\n3'-UUU...GUGUU_________UAGUUUCU_____U_____-5'\n_____________|___________________________|\n_____________29__________________________1\n |
264 -- 270 |
20 -- 26 |
-27.647 kcal/mol |
12.2839 kcal/mol |
2.519 kcal/mol |
261 289@LB@ | |@LB@5'-GGC...GCACG UGAAUGCC GUUGC...ACG-3'@LB@ GAUGGGGAC GAAGU GUGGC@LB@ :|||||||| :|||: |||||@LB@ UUACCCCUG UUUCG CACCG@LB@3'-UUU...GUGUU UAGUUUCU U -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -27.647 kcal/mol@LB@Unfolding Energy - mRNA 12.2839 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 262 -- 288@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 20 -- 26@LB@ |
95 |
0.005813 |
0.2147 |
b3450 |
ugpC |
-12.76 |
0.087557 |
84 -- 111 |
1 -- 34 |
sn-glycerol-3-phosphate ABC transporter ATPase |
|
_____________83_________________________________112\n_____________|__________________________________|\n5'-GUG...AGGCA___________A________U_____________GAUGU...UCG-3'\n______________CCACGGAAUGG__AC_UCAG_GA____UGGUGGC\n______________||||::|||||__||_|||:_||____::|||||\n______________GGUGUUUUACC__UG_AGUU_CU____GUCACCG\n3'-UUU...CCCGA___________CC__U____U__UUUC_______-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
105 -- 111 |
1 -- 7 |
-27.9886 kcal/mol |
10.9582 kcal/mol |
4.26884 kcal/mol |
83 112@LB@ | |@LB@5'-GUG...AGGCA A U GAUGU...UCG-3'@LB@ CCACGGAAUGG AC UCAG GA UGGUGGC@LB@ ||||::||||| || |||: || ::|||||@LB@ GGUGUUUUACC UG AGUU CU GUCACCG@LB@3'-UUU...CCCGA CC U U UUUC -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -27.9886 kcal/mol@LB@Unfolding Energy - mRNA 10.9582 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 84 -- 111@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 1 -- 7@LB@ |
177 |
0.01288 |
0.2504 |
b3455 |
livG |
-10.61 |
0.218983 |
178 -- 198 |
5 -- 24 |
branched-chain amino acid ABC transporter ATPase |
|
_____________177___________________199\n_____________|_____________________|\n5'-AUG...AAAAC__C___GCG____________GCAUG...UCG-3'\n______________GG_GCA___AAAGGAGAGCAG\n______________||_:||___||||:|:|||||\n______________CC_UGU___UUUCUUUUCGUC\n3'-UUU...UUUAC__C___AG_____________ACCG-5'\n_____________|_____________________|\n_____________25____________________4\n |
192 -- 198 |
5 -- 11 |
-19.5574 kcal/mol |
6.51739 kcal/mol |
2.42705 kcal/mol |
177 199@LB@ | |@LB@5'-AUG...AAAAC C GCG GCAUG...UCG-3'@LB@ GG GCA AAAGGAGAGCAG@LB@ || :|| ||||:|:|||||@LB@ CC UGU UUUCUUUUCGUC@LB@3'-UUU...UUUAC C AG ACCG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -19.5574 kcal/mol@LB@Unfolding Energy - mRNA 6.51739 kcal/mol@LB@Unfolding Energy - sRNA 2.42705 kcal/mol@LB@@LB@Position - mRNA 178 -- 198@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
30 |
0.001442 |
0.1635 |
b3458 |
livK |
-12.84 |
0.084462 |
180 -- 215 |
6 -- 33 |
leucine transporter subunit |
|
_____________179___________________________________216\n_____________|_____________________________________|\n5'-UGU...AACAU______________UUUUGACU__G___C____U___AAAAC...CGA-3'\n______________CAC_GAAUGGGGAU________AU_AAA_GGAA_GCG\n______________|||_:||||||||:________||_|||_|:||_||:\n______________GUG_UUUACCCCUG________UA_UUU_CUUU_CGU\n3'-UUU...CCGAG___U____________________G________U___CACCG-5'\n_____________|_____________________________________|\n_____________34____________________________________5\n |
186 -- 192 |
20 -- 26 |
-21.4141 kcal/mol |
5.49822 kcal/mol |
3.07787 kcal/mol |
179 216@LB@ | |@LB@5'-UGU...AACAU UUUUGACU G C U AAAAC...CGA-3'@LB@ CAC GAAUGGGGAU AU AAA GGAA GCG@LB@ ||| :||||||||: || ||| |:|| ||:@LB@ GUG UUUACCCCUG UA UUU CUUU CGU@LB@3'-UUU...CCGAG U G U CACCG-5'@LB@ | |@LB@ 34 5@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -21.4141 kcal/mol@LB@Unfolding Energy - mRNA 5.49822 kcal/mol@LB@Unfolding Energy - sRNA 3.07787 kcal/mol@LB@@LB@Position - mRNA 180 -- 215@LB@Position - sRNA 6 -- 33@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 20 -- 26@LB@ |
48 |
0.002302 |
0.1648 |
b3460 |
livJ |
-15.11 |
0.026091 |
183 -- 229 |
1 -- 30 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________182_____________________________________________230\n_____________|_______________________________________________|\n5'-AAU...CCAGA___________UC___GGAUGAACAUAA____U______UUAC____AGGAU...CAA-3'\n______________AGAAUGGGGAU__UCA____________AGGG_AAAGCG____UGGC\n______________|:||||||||:__|||____________|:|:_|||||:____||||\n______________UUUUACCCCUG__AGU____________UUCU_UUUCGU____ACCG\n3'-UUU...AGGUG___________U___________________________C_______-5'\n_____________|______________________________________________|\n_____________31_____________________________________________1\n |
187 -- 193 |
20 -- 26 |
-27.0033 kcal/mol |
9.37443 kcal/mol |
2.51911 kcal/mol |
182 230@LB@ | |@LB@5'-AAU...CCAGA UC GGAUGAACAUAA U UUAC AGGAU...CAA-3'@LB@ AGAAUGGGGAU UCA AGGG AAAGCG UGGC@LB@ |:||||||||: ||| |:|: |||||: ||||@LB@ UUUUACCCCUG AGU UUCU UUUCGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -27.0033 kcal/mol@LB@Unfolding Energy - mRNA 9.37443 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 183 -- 229@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 20 -- 26@LB@ |
121 |
0.008566 |
0.2484 |
b3466 |
yhhL |
-13.33 |
0.066537 |
119 -- 150 |
1 -- 32 |
DUF1145 family protein |
|
_____________118_________________________________151\n_____________|___________________________________|\n5'-GUU...UUCCA_____C___UCAUU_____________________GGGUC...UUA-3'\n______________GCAAA_UGG_____ACAUC_GGGAAAA__AGUGGC\n______________:||||_|||_____|||||_::|||||__||||||\n______________UGUUU_ACC_____UGUAG_UUCUUUU__UCACCG\n3'-UUU...CGAGG_____U___CC________U_______CG______-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
138 -- 144 |
9 -- 15 |
-23.4834 kcal/mol |
7.61069 kcal/mol |
2.53929 kcal/mol |
118 151@LB@ | |@LB@5'-GUU...UUCCA C UCAUU GGGUC...UUA-3'@LB@ GCAAA UGG ACAUC GGGAAAA AGUGGC@LB@ :|||| ||| ||||| ::||||| ||||||@LB@ UGUUU ACC UGUAG UUCUUUU UCACCG@LB@3'-UUU...CGAGG U CC U CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -23.4834 kcal/mol@LB@Unfolding Energy - mRNA 7.61069 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 119 -- 150@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 9 -- 15@LB@ |
31 |
0.001481 |
0.1635 |
b3468 |
yhhN |
-14.35 |
0.039524 |
32 -- 52 |
1 -- 21 |
TMEM86 family putative inner membrane protein |
|
_____________31____________________53\n_____________|_____________________|\n5'-CGA...UGAUA___A__________A______UUGCU...UAA-3'\n______________ACA_UAAAGAAAAG_GGUGGU\n______________|||_:|||||||||_:||||:\n______________UGU_GUUUCUUUUC_UCACCG\n3'-UUU...ACCCC___A__________G______-5'\n_____________|____________________|\n_____________22___________________1\n |
39 -- 45 |
8 -- 14 |
-21.1877 kcal/mol |
5.32481 kcal/mol |
1.51103 kcal/mol |
31 53@LB@ | |@LB@5'-CGA...UGAUA A A UUGCU...UAA-3'@LB@ ACA UAAAGAAAAG GGUGGU@LB@ ||| :||||||||| :||||:@LB@ UGU GUUUCUUUUC UCACCG@LB@3'-UUU...ACCCC A G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -21.1877 kcal/mol@LB@Unfolding Energy - mRNA 5.32481 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 32 -- 52@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 8 -- 14@LB@ |
180 |
0.01303 |
0.2504 |
b3487 |
yhiI |
-13.61 |
0.058128 |
230 -- 256 |
1 -- 27 |
putative membrane fusion protein (MFP) of efflux pump |
|
_____________229__________________________257\n_____________|____________________________|\n5'-UUU...GCGUG_____U________UUACU_________GGCUA...CGG-3'\n______________GUGGG__UGUCGGG_____GGCGGUGGC\n______________:||||__::||:::_____:||:|||||\n______________UACCC__GUAGUUU_____UCGUCACCG\n3'-UUU...UGUUU_____CU_______CUUU__________-5'\n_____________|___________________________|\n_____________28__________________________1\n |
250 -- 256 |
1 -- 7 |
-27.1902 kcal/mol |
11.0661 kcal/mol |
2.51867 kcal/mol |
229 257@LB@ | |@LB@5'-UUU...GCGUG U UUACU GGCUA...CGG-3'@LB@ GUGGG UGUCGGG GGCGGUGGC@LB@ :|||| ::||::: :||:|||||@LB@ UACCC GUAGUUU UCGUCACCG@LB@3'-UUU...UGUUU CU CUUU -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -27.1902 kcal/mol@LB@Unfolding Energy - mRNA 11.0661 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 230 -- 256@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 1 -- 7@LB@ |
88 |
0.005527 |
0.2147 |
b3525 |
yhjH |
-13.65 |
0.056862 |
190 -- 212 |
5 -- 23 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________189_____________________213\n_____________|_______________________|\n5'-UUA...ACACA_______UUU__UGAU_______GUUAU...CCU-3'\n______________GGACAUC___GA____AAGGCAG\n______________|||||||___||____||:||||\n______________CCUGUAG___CU____UUUCGUC\n3'-UUU...UUACC_______UUU_____________ACCG-5'\n_____________|_______________________|\n_____________24______________________4\n |
206 -- 212 |
5 -- 11 |
-19.0549 kcal/mol |
3.83037 kcal/mol |
1.57523 kcal/mol |
189 213@LB@ | |@LB@5'-UUA...ACACA UUU UGAU GUUAU...CCU-3'@LB@ GGACAUC GA AAGGCAG@LB@ ||||||| || ||:||||@LB@ CCUGUAG CU UUUCGUC@LB@3'-UUU...UUACC UUU ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -19.0549 kcal/mol@LB@Unfolding Energy - mRNA 3.83037 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 5 -- 11@LB@ |
191 |
0.01405 |
0.2529 |
b3532 |
bcsB |
-12.45 |
0.101006 |
205 -- 235 |
1 -- 16 |
regulator of cellulose synthase cyclic di-GMP binding |
|
_____________204_____________________________236\n_____________|_______________________________|\n5'-AAG...GAUGA________CUAUUCUGGAUUUGU________UAUGG...UCA-3'\n______________AAAGAAAA_______________GCAGUGGC\n______________||||||||_______________||||||||\n______________UUUCUUUU_______________CGUCACCG\n3'-UUU...UGUAG_______________________________-5'\n_____________|______________________________|\n_____________17_____________________________1\n |
229 -- 235 |
1 -- 7 |
-19.2133 kcal/mol |
5.41496 kcal/mol |
1.34555 kcal/mol |
204 236@LB@ | |@LB@5'-AAG...GAUGA CUAUUCUGGAUUUGU UAUGG...UCA-3'@LB@ AAAGAAAA GCAGUGGC@LB@ |||||||| ||||||||@LB@ UUUCUUUU CGUCACCG@LB@3'-UUU...UGUAG -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -19.2133 kcal/mol@LB@Unfolding Energy - mRNA 5.41496 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 205 -- 235@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
101 |
0.006298 |
0.2188 |
b3549 |
tag |
-14.94 |
0.028658 |
147 -- 165 |
3 -- 21 |
3-methyl-adenine DNA glycosylase I constitutive |
|
_____________146__________________166\n_____________|____________________|\n5'-GCA...CCGAU_________________C__AAAUU...AAA-3'\n______________GCGUC_AAGAAAAGCGG_UG\n______________:|:||_|||||||||:|_||\n______________UGUAG_UUCUUUUCGUC_AC\n3'-UUU...ACCCC_____U______________CG-5'\n_____________|____________________|\n_____________22___________________2\n |
156 -- 162 |
5 -- 11 |
-20.7072 kcal/mol |
4.25403 kcal/mol |
1.5107 kcal/mol |
146 166@LB@ | |@LB@5'-GCA...CCGAU C AAAUU...AAA-3'@LB@ GCGUC AAGAAAAGCGG UG@LB@ :|:|| |||||||||:| ||@LB@ UGUAG UUCUUUUCGUC AC@LB@3'-UUU...ACCCC U CG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -20.7072 kcal/mol@LB@Unfolding Energy - mRNA 4.25403 kcal/mol@LB@Unfolding Energy - sRNA 1.5107 kcal/mol@LB@@LB@Position - mRNA 147 -- 165@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 5 -- 11@LB@ |
70 |
0.003861 |
0.1936 |
b3559 |
glyS |
-15.28 |
0.023738 |
120 -- 130 |
1 -- 11 |
glycine tRNA synthetase beta subunit |
|
_____________119_________131\n_____________|___________|\n5'-CGC...UGACC___________AGAAG...CGG-3'\n______________AAAGCAGUGGC\n______________|||||||||||\n______________UUUCGUCACCG\n3'-UUU...UUUCU___________-5'\n_____________|__________|\n_____________12_________1\n |
124 -- 130 |
1 -- 7 |
-20.0617 kcal/mol |
3.50787 kcal/mol |
1.27751 kcal/mol |
119 131@LB@ | |@LB@5'-CGC...UGACC AGAAG...CGG-3'@LB@ AAAGCAGUGGC@LB@ |||||||||||@LB@ UUUCGUCACCG@LB@3'-UUU...UUUCU -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -20.0617 kcal/mol@LB@Unfolding Energy - mRNA 3.50787 kcal/mol@LB@Unfolding Energy - sRNA 1.27751 kcal/mol@LB@@LB@Position - mRNA 120 -- 130@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 1 -- 7@LB@ |
22 |
0.0008145 |
0.1243 |
b3574 |
yiaJ |
-21.10 |
0.000313 |
196 -- 241 |
1 -- 32 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________195____________________________________________242\n_____________|______________________________________________|\n5'-CCC...ACGCG____________A_GAAGUGAUGGGAAAA________CG__A____GCAGG...UUG-3'\n______________ACAAAAUGGGGA_A_______________AAAGAGAA__AG_UGGC\n______________||||||||||||_|_______________|||||:||__||_||||\n______________UGUUUUACCCCU_U_______________UUUCUUUU__UC_ACCG\n3'-UUU...CGAGG____________G_AG_____________________CG_______-5'\n_____________|_____________________________________________|\n_____________33____________________________________________1\n |
226 -- 232 |
9 -- 15 |
-30.0936 kcal/mol |
6.45407 kcal/mol |
2.53929 kcal/mol |
195 242@LB@ | |@LB@5'-CCC...ACGCG A GAAGUGAUGGGAAAA CG A GCAGG...UUG-3'@LB@ ACAAAAUGGGGA A AAAGAGAA AG UGGC@LB@ |||||||||||| | |||||:|| || ||||@LB@ UGUUUUACCCCU U UUUCUUUU UC ACCG@LB@3'-UUU...CGAGG G AG CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -21.10 kcal/mol@LB@Hybridization Energy -30.0936 kcal/mol@LB@Unfolding Energy - mRNA 6.45407 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 241@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 9 -- 15@LB@ |
193 |
0.01407 |
0.2529 |
b3582 |
sgbU |
-12.18 |
0.114391 |
219 -- 241 |
1 -- 24 |
putative L-xylulose 5-phosphate 3-epimerase |
|
_____________218______________________242\n_____________|________________________|\n5'-UCU...AGUUA_________UGA_______C____GAAAG...UUG-3'\n______________GGGAU_UUA___AAAAGCG_UGGC\n______________||||:_|:|___||||||:_||||\n______________CCCUG_AGU___UUUUCGU_ACCG\n3'-UUU...UUUAC_____U___UUC_______C____-5'\n_____________|_______________________|\n_____________25______________________1\n |
230 -- 236 |
6 -- 12 |
-20.9157 kcal/mol |
6.29567 kcal/mol |
2.44282 kcal/mol |
218 242@LB@ | |@LB@5'-UCU...AGUUA UGA C GAAAG...UUG-3'@LB@ GGGAU UUA AAAAGCG UGGC@LB@ ||||: |:| ||||||: ||||@LB@ CCCUG AGU UUUUCGU ACCG@LB@3'-UUU...UUUAC U UUC C -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -20.9157 kcal/mol@LB@Unfolding Energy - mRNA 6.29567 kcal/mol@LB@Unfolding Energy - sRNA 2.44282 kcal/mol@LB@@LB@Position - mRNA 219 -- 241@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 6 -- 12@LB@ |
103 |
0.006657 |
0.2268 |
b3617 |
kbl |
-13.19 |
0.071337 |
258 -- 276 |
7 -- 25 |
glycine C-acetyltransferase |
|
_____________257_________________277\n_____________|___________________|\n5'-UUU...CGGAA___UUGU____________GCAUU...AAG-3'\n______________GGG____UUAAAGAAGAGC\n______________|||____|:||||||:|||\n______________CCC____AGUUUCUUUUCG\n3'-UUU...UUUUA___CUGU____________UCACCG-5'\n_____________|___________________|\n_____________26__________________6\n |
270 -- 276 |
7 -- 13 |
-19.594 kcal/mol |
5.69693 kcal/mol |
0.70626 kcal/mol |
257 277@LB@ | |@LB@5'-UUU...CGGAA UUGU GCAUU...AAG-3'@LB@ GGG UUAAAGAAGAGC@LB@ ||| |:||||||:|||@LB@ CCC AGUUUCUUUUCG@LB@3'-UUU...UUUUA CUGU UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -19.594 kcal/mol@LB@Unfolding Energy - mRNA 5.69693 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 258 -- 276@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
165 |
0.01211 |
0.2504 |
b3642 |
pyrE |
-11.74 |
0.138291 |
22 -- 41 |
7 -- 25 |
orotate phosphoribosyltransferase |
|
_____________21___________________42\n_____________|____________________|\n5'-CGG...GUGCA_______GCA_____C____CGUUC...AUU-3'\n______________GGGGACG___GAAGG_GAGC\n______________||||||:___:|||:_:|||\n______________CCCCUGU___UUUCU_UUCG\n3'-UUU...UUUUA_______AG______U____UCACCG-5'\n_____________|____________________|\n_____________26___________________6\n |
22 -- 28 |
19 -- 25 |
-22.5653 kcal/mol |
10.1153 kcal/mol |
0.70626 kcal/mol |
21 42@LB@ | |@LB@5'-CGG...GUGCA GCA C CGUUC...AUU-3'@LB@ GGGGACG GAAGG GAGC@LB@ ||||||: :|||: :|||@LB@ CCCCUGU UUUCU UUCG@LB@3'-UUU...UUUUA AG U UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -22.5653 kcal/mol@LB@Unfolding Energy - mRNA 10.1153 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 22 -- 41@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 19 -- 25@LB@ |
18 |
0.0007186 |
0.1243 |
b3657 |
yicJ |
-19.60 |
0.001218 |
184 -- 200 |
5 -- 21 |
putative transporter |
|
_____________183_______________201\n_____________|_________________|\n5'-CAG...CUAUA_________________AUGAA...UGU-3'\n______________GCAUCAAGGAAAAGCAG\n______________:||||||:|||||||||\n______________UGUAGUUUCUUUUCGUC\n3'-UUU...ACCCC_________________ACCG-5'\n_____________|_________________|\n_____________22________________4\n |
194 -- 200 |
5 -- 11 |
-25.6417 kcal/mol |
4.53845 kcal/mol |
1.5073 kcal/mol |
183 201@LB@ | |@LB@5'-CAG...CUAUA AUGAA...UGU-3'@LB@ GCAUCAAGGAAAAGCAG@LB@ :||||||:|||||||||@LB@ UGUAGUUUCUUUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -19.60 kcal/mol@LB@Hybridization Energy -25.6417 kcal/mol@LB@Unfolding Energy - mRNA 4.53845 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 184 -- 200@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
109 |
0.007372 |
0.2348 |
b3701 |
dnaN |
-13.44 |
0.063163 |
149 -- 162 |
9 -- 22 |
DNA polymerase III beta subunit |
|
_____________148____________163\n_____________|______________|\n5'-GGC...GCCAC______________UUUUU...UGC-3'\n______________GAUAUCAAAGAAGA\n______________||:|||||||||:|\n______________CUGUAGUUUCUUUU\n3'-UUU...UACCC______________CGUCACCG-5'\n_____________|______________|\n_____________23_____________8\n |
156 -- 162 |
9 -- 15 |
-16.0152 kcal/mol |
2.0875 kcal/mol |
0.488786 kcal/mol |
148 163@LB@ | |@LB@5'-GGC...GCCAC UUUUU...UGC-3'@LB@ GAUAUCAAAGAAGA@LB@ ||:|||||||||:|@LB@ CUGUAGUUUCUUUU@LB@3'-UUU...UACCC CGUCACCG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -13.44 kcal/mol@LB@Hybridization Energy -16.0152 kcal/mol@LB@Unfolding Energy - mRNA 2.0875 kcal/mol@LB@Unfolding Energy - sRNA 0.488786 kcal/mol@LB@@LB@Position - mRNA 149 -- 162@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 9 -- 15@LB@ |
26 |
0.001009 |
0.1361 |
b3731 |
atpC |
-14.21 |
0.042680 |
144 -- 160 |
2 -- 20 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________143_________________161\n_____________|___________________|\n5'-UCC...GGUUC______________U____AAAAA...UGG-3'\n______________CAUCGAAGA__AGC_GUGG\n______________||||:||||__|||_||||\n______________GUAGUUUCU__UCG_CACC\n3'-UUU...CCCCU_________UU___U____G-5'\n_____________|___________________|\n_____________21__________________1\n |
146 -- 152 |
12 -- 18 |
-19.7705 kcal/mol |
4.1055 kcal/mol |
1.45839 kcal/mol |
143 161@LB@ | |@LB@5'-UCC...GGUUC U AAAAA...UGG-3'@LB@ CAUCGAAGA AGC GUGG@LB@ ||||:|||| ||| ||||@LB@ GUAGUUUCU UCG CACC@LB@3'-UUU...CCCCU UU U G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.21 kcal/mol@LB@Hybridization Energy -19.7705 kcal/mol@LB@Unfolding Energy - mRNA 4.1055 kcal/mol@LB@Unfolding Energy - sRNA 1.45839 kcal/mol@LB@@LB@Position - mRNA 144 -- 160@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 12 -- 18@LB@ |
25 |
0.0009834 |
0.1361 |
b3733 |
atpG |
-13.27 |
0.068654 |
183 -- 205 |
1 -- 22 |
F1 sector of membrane-bound ATP synthase gamma subunit |
|
_____________182_____________________206\n_____________|_______________________|\n5'-GGC...CGCAA________________UCA____CGGCG...GUA-3'\n______________GGCAUUGAGGAGAAGC___UGGC\n______________|:|||::|:||:||||___||||\n______________CUGUAGUUUCUUUUCG___ACCG\n3'-UUU...UACCC________________UC_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
192 -- 198 |
7 -- 13 |
-25.5897 kcal/mol |
10.7799 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-GGC...CGCAA UCA CGGCG...GUA-3'@LB@ GGCAUUGAGGAGAAGC UGGC@LB@ |:|||::|:||:|||| ||||@LB@ CUGUAGUUUCUUUUCG ACCG@LB@3'-UUU...UACCC UC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -25.5897 kcal/mol@LB@Unfolding Energy - mRNA 10.7799 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
14 |
0.0006392 |
0.1243 |
b3745 |
viaA |
-13.90 |
0.050132 |
246 -- 264 |
10 -- 25 |
stimulator of RavA ATPase activity; von Willebrand factor domain protein |
|
_____________245_________________265\n_____________|___________________|\n5'-ACG...GCGAA_A_____UG__________UGAUC...CGG-3'\n______________G_GGGAU__AUCGAAGAGA\n______________|_||||:__|||:||||:|\n______________C_CCCUG__UAGUUUCUUU\n3'-UUU...UUUUA___________________UCGUC...CCG-5'\n_____________|___________________|\n_____________26__________________9\n |
258 -- 264 |
10 -- 16 |
-16.9183 kcal/mol |
2.35086 kcal/mol |
0.670388 kcal/mol |
245 265@LB@ | |@LB@5'-ACG...GCGAA A UG UGAUC...CGG-3'@LB@ G GGGAU AUCGAAGAGA@LB@ | ||||: |||:||||:|@LB@ C CCCUG UAGUUUCUUU@LB@3'-UUU...UUUUA UCGUC...CCG-5'@LB@ | |@LB@ 26 9@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -16.9183 kcal/mol@LB@Unfolding Energy - mRNA 2.35086 kcal/mol@LB@Unfolding Energy - sRNA 0.670388 kcal/mol@LB@@LB@Position - mRNA 246 -- 264@LB@Position - sRNA 10 -- 25@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 10 -- 16@LB@ |
1 |
0 |
0 |
b3752 |
rbsK |
-20.54 |
0.000534 |
137 -- 155 |
1 -- 21 |
ribokinase |
|
_____________136___________________156\n_____________|_____________________|\n5'-GCA...GUGUA_____________________ACGCG...GUA-3'\n______________AUA_UAAAGAAAAGCAG_GGC\n______________|:|_:||||||||||||_|||\n______________UGU_GUUUCUUUUCGUC_CCG\n3'-UUU...ACCCC___A_____________A___-5'\n_____________|____________________|\n_____________22___________________1\n |
146 -- 152 |
5 -- 11 |
-23.5677 kcal/mol |
1.51892 kcal/mol |
1.51103 kcal/mol |
136 156@LB@ | |@LB@5'-GCA...GUGUA ACGCG...GUA-3'@LB@ AUA UAAAGAAAAGCAG GGC@LB@ |:| :|||||||||||| |||@LB@ UGU GUUUCUUUUCGUC CCG@LB@3'-UUU...ACCCC A A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -20.54 kcal/mol@LB@Hybridization Energy -23.5677 kcal/mol@LB@Unfolding Energy - mRNA 1.51892 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 137 -- 155@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 5 -- 11@LB@ |
102 |
0.006464 |
0.2224 |
b3785 |
wzzE |
-10.51 |
0.228012 |
146 -- 168 |
1 -- 22 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________145_____________________169\n_____________|_______________________|\n5'-GCU...ACGCA___UG__U_____UC________AGCCC...UUA-3'\n______________GAC__CG_AGAAA__GUGGUGGC\n______________|||__|:_|||||__|::|||||\n______________CUG__GU_UCUUU__CGUCACCG\n3'-UUU...UACCC___UA__U_____U_________-5'\n_____________|______________________|\n_____________23_____________________1\n |
162 -- 168 |
1 -- 7 |
-19.8866 kcal/mol |
7.83936 kcal/mol |
1.54023 kcal/mol |
145 169@LB@ | |@LB@5'-GCU...ACGCA UG U UC AGCCC...UUA-3'@LB@ GAC CG AGAAA GUGGUGGC@LB@ ||| |: ||||| |::|||||@LB@ CUG GU UCUUU CGUCACCG@LB@3'-UUU...UACCC UA U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -19.8866 kcal/mol@LB@Unfolding Energy - mRNA 7.83936 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 146 -- 168@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 1 -- 7@LB@ |
98 |
0.006107 |
0.2179 |
b3822 |
recQ |
-9.35 |
0.343777 |
185 -- 205 |
1 -- 22 |
ATP-dependent DNA helicase |
|
_____________184_____________________206\n_____________|_______________________|\n5'-CGC...UUUCA___A_______U___U_______GCAGG...UUA-3'\n______________GGC_AUCGGGG_GAA___GUGGC\n______________|:|_|||:::|_:||___|||||\n______________CUG_UAGUUUC_UUU___CACCG\n3'-UUU...UACCC___________U___CGU_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
189 -- 195 |
13 -- 19 |
-17.8698 kcal/mol |
6.98341 kcal/mol |
1.54023 kcal/mol |
184 206@LB@ | |@LB@5'-CGC...UUUCA A U U GCAGG...UUA-3'@LB@ GGC AUCGGGG GAA GUGGC@LB@ |:| |||:::| :|| |||||@LB@ CUG UAGUUUC UUU CACCG@LB@3'-UUU...UACCC U CGU -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -17.8698 kcal/mol@LB@Unfolding Energy - mRNA 6.98341 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 13 -- 19@LB@ |
157 |
0.0114 |
0.2504 |
b3833 |
ubiE |
-14.57 |
0.035245 |
198 -- 236 |
1 -- 30 |
bifunctional 2-octaprenyl-6-methoxy-1 4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase |
|
_____________197_____________________________________237\n_____________|_______________________________________|\n5'-ACA...GCAUU_______U____AA____C______CGAC___CUU____UUUCA...CAU-3'\n______________GAGAUGG_GGAU__GUCA_AAGAAA____GCA___UGGU\n______________:|:||||_|||:__:|||_||||||____|||___|||:\n______________UUUUACC_CCUG__UAGU_UUCUUU____CGU___ACCG\n3'-UUU...AGGUG_________________________U______C______-5'\n_____________|______________________________________|\n_____________31_____________________________________1\n |
198 -- 204 |
24 -- 30 |
-23.6374 kcal/mol |
6.55293 kcal/mol |
2.51911 kcal/mol |
197 237@LB@ | |@LB@5'-ACA...GCAUU U AA C CGAC CUU UUUCA...CAU-3'@LB@ GAGAUGG GGAU GUCA AAGAAA GCA UGGU@LB@ :|:|||| |||: :||| |||||| ||| |||:@LB@ UUUUACC CCUG UAGU UUCUUU CGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -23.6374 kcal/mol@LB@Unfolding Energy - mRNA 6.55293 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 236@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 24 -- 30@LB@ |
73 |
0.004089 |
0.1966 |
b3857 |
mobA |
-16.43 |
0.011914 |
256 -- 282 |
7 -- 29 |
molybdopterin-guanine dinucleotide synthase |
|
_____________255_________________________283\n_____________|___________________________|\n5'-UCC...CAGAC_______C_____AGA_______UU__UUGAA...AAC-3'\n______________GAAUGGG_GGCGU___UAAAGGA__GC\n______________:||||||_|:|:|___:||||:|__||\n______________UUUACCC_CUGUA___GUUUCUU__CG\n3'-UUU...GGUGU_______________________UU__UCACCG-5'\n_____________|___________________________|\n_____________30__________________________6\n |
272 -- 278 |
11 -- 17 |
-21.4093 kcal/mol |
4.27411 kcal/mol |
0.706428 kcal/mol |
255 283@LB@ | |@LB@5'-UCC...CAGAC C AGA UU UUGAA...AAC-3'@LB@ GAAUGGG GGCGU UAAAGGA GC@LB@ :|||||| |:|:| :||||:| ||@LB@ UUUACCC CUGUA GUUUCUU CG@LB@3'-UUU...GGUGU UU UCACCG-5'@LB@ | |@LB@ 30 6@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -21.4093 kcal/mol@LB@Unfolding Energy - mRNA 4.27411 kcal/mol@LB@Unfolding Energy - sRNA 0.706428 kcal/mol@LB@@LB@Position - mRNA 256 -- 282@LB@Position - sRNA 7 -- 29@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 11 -- 17@LB@ |
159 |
0.01174 |
0.2504 |
b3886 |
yihY |
-12.46 |
0.100688 |
17 -- 39 |
6 -- 26 |
BrkB family putative transporter inner membrane protein |
|
_____________16______________________40\n_____________|_______________________|\n5'-UAU...AGAUC________CG____CCU______CGAAU...CAA-3'\n______________UGGGGAUG__CAAA___GAAGCA\n______________||||||::__||||___:|||||\n______________ACCCCUGU__GUUU___UUUCGU\n3'-UUU...GUUUU________A_____CU_______CACCG-5'\n_____________|_______________________|\n_____________27______________________5\n |
18 -- 24 |
19 -- 25 |
-18.1196 kcal/mol |
4.95346 kcal/mol |
0.706421 kcal/mol |
16 40@LB@ | |@LB@5'-UAU...AGAUC CG CCU CGAAU...CAA-3'@LB@ UGGGGAUG CAAA GAAGCA@LB@ ||||||:: |||| :|||||@LB@ ACCCCUGU GUUU UUUCGU@LB@3'-UUU...GUUUU A CU CACCG-5'@LB@ | |@LB@ 27 5@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -18.1196 kcal/mol@LB@Unfolding Energy - mRNA 4.95346 kcal/mol@LB@Unfolding Energy - sRNA 0.706421 kcal/mol@LB@@LB@Position - mRNA 17 -- 39@LB@Position - sRNA 6 -- 26@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 19 -- 25@LB@ |
158 |
0.01161 |
0.2504 |
b3907 |
rhaT |
-15.90 |
0.016445 |
218 -- 234 |
1 -- 28 |
L-rhamnose:proton symporter |
|
_____________217__________________________235\n_____________|____________________________|\n5'-AUG...AUUAC____________U_______________AUUUG...CAU-3'\n______________GAUGGGGAUAUU____________UGGC\n______________:|||||||:||:____________||||\n______________UUACCCCUGUAG____________ACCG\n3'-UUU...GUGUU____________UUUCUUUUCGUC____-5'\n_____________|___________________________|\n_____________29__________________________1\n |
223 -- 229 |
17 -- 23 |
-20.3321 kcal/mol |
1.91011 kcal/mol |
2.519 kcal/mol |
217 235@LB@ | |@LB@5'-AUG...AUUAC U AUUUG...CAU-3'@LB@ GAUGGGGAUAUU UGGC@LB@ :|||||||:||: ||||@LB@ UUACCCCUGUAG ACCG@LB@3'-UUU...GUGUU UUUCUUUUCGUC -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -15.90 kcal/mol@LB@Hybridization Energy -20.3321 kcal/mol@LB@Unfolding Energy - mRNA 1.91011 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 218 -- 234@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 17 -- 23@LB@ |
37 |
0.001785 |
0.1648 |
b3933 |
ftsN |
-15.64 |
0.019200 |
24 -- 52 |
1 -- 29 |
essential cell division protein |
|
_____________23______________________________53\n_____________|_______________________________|\n5'-AGC...UGAUC_____CA______A__CGUU___________UCUCG...CUC-3'\n______________AAAUG__GGGGCA_CA______GGCAGUGGC\n______________|||||__|||:||_||______:||||||||\n______________UUUAC__CCCUGU_GU______UCGUCACCG\n3'-UUU...GGUGU_____________A__UUCUUU_________-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
46 -- 52 |
1 -- 7 |
-29.0551 kcal/mol |
10.8938 kcal/mol |
2.51907 kcal/mol |
23 53@LB@ | |@LB@5'-AGC...UGAUC CA A CGUU UCUCG...CUC-3'@LB@ AAAUG GGGGCA CA GGCAGUGGC@LB@ ||||| |||:|| || :||||||||@LB@ UUUAC CCCUGU GU UCGUCACCG@LB@3'-UUU...GGUGU A UUCUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.64 kcal/mol@LB@Hybridization Energy -29.0551 kcal/mol@LB@Unfolding Energy - mRNA 10.8938 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 24 -- 52@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
91 |
0.005641 |
0.2147 |
b3956 |
ppc |
-14.82 |
0.030673 |
242 -- 282 |
2 -- 37 |
phosphoenolpyruvate carboxylase |
|
_____________241_________________________________________283\n_____________|___________________________________________|\n5'-CUU...AGUAU____G________CU____GAAAC_________U_____U___GAGAA...AAC-3'\n______________GCUC_GCAAAGUG__GGGA_____CAUCAAGGA___GCG_UGG\n______________||||_:||||:||__||||_____||||||:||___||:_|||\n______________CGAG_UGUUUUAC__CCCU_____GUAGUUUCU___CGU_ACC\n3'-UUU...CUACC____G____________________________UUU___C___G-5'\n_____________|___________________________________________|\n_____________38__________________________________________1\n |
268 -- 274 |
12 -- 18 |
-37.6415 kcal/mol |
13.2441 kcal/mol |
9.57751 kcal/mol |
241 283@LB@ | |@LB@5'-CUU...AGUAU G CU GAAAC U U GAGAA...AAC-3'@LB@ GCUC GCAAAGUG GGGA CAUCAAGGA GCG UGG@LB@ |||| :||||:|| |||| ||||||:|| ||: |||@LB@ CGAG UGUUUUAC CCCU GUAGUUUCU CGU ACC@LB@3'-UUU...CUACC G UUU C G-5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -14.82 kcal/mol@LB@Hybridization Energy -37.6415 kcal/mol@LB@Unfolding Energy - mRNA 13.2441 kcal/mol@LB@Unfolding Energy - sRNA 9.57751 kcal/mol@LB@@LB@Position - mRNA 242 -- 282@LB@Position - sRNA 2 -- 37@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 12 -- 18@LB@ |
176 |
0.01279 |
0.2504 |
b3980 |
tufB |
-13.59 |
0.058494 |
200 -- 216 |
7 -- 22 |
translation elongation factor EF-Tu 2 |
b3339 |
_____________199_______________217\n_____________|_________________|\n5'-UCC...CAAUC______U__________UUGAA...CUA-3'\n______________GAUGUC_AAAGAAAAGU\n______________||::||_|||||||||:\n______________CUGUAG_UUUCUUUUCG\n3'-UUU...UACCC_________________UCACCG-5'\n_____________|_________________|\n_____________23________________6\n |
210 -- 216 |
7 -- 13 |
-16.0105 kcal/mol |
1.82662 kcal/mol |
0.590875 kcal/mol |
199 217@LB@ | |@LB@5'-UCC...CAAUC U UUGAA...CUA-3'@LB@ GAUGUC AAAGAAAAGU@LB@ ||::|| |||||||||:@LB@ CUGUAG UUUCUUUUCG@LB@3'-UUU...UACCC UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -16.0105 kcal/mol@LB@Unfolding Energy - mRNA 1.82662 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 200 -- 216@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 7 -- 13@LB@ |
142 |
0.01047 |
0.2504 |
b3998 |
nfi |
-11.68 |
0.142276 |
34 -- 51 |
5 -- 21 |
endonuclease V; deoxyinosine 3' endonuclease |
|
_____________33_________________52\n_____________|__________________|\n5'-UGG...UGCCC_________A________CGACU...GAG-3'\n______________GCAUUGAAG_AGAAGUAG\n______________:|||::|||_|:|||:||\n______________UGUAGUUUC_UUUUCGUC\n3'-UUU...ACCCC__________________ACCG-5'\n_____________|__________________|\n_____________22_________________4\n |
45 -- 51 |
5 -- 11 |
-17.0993 kcal/mol |
3.91468 kcal/mol |
1.5073 kcal/mol |
33 52@LB@ | |@LB@5'-UGG...UGCCC A CGACU...GAG-3'@LB@ GCAUUGAAG AGAAGUAG@LB@ :|||::||| |:|||:||@LB@ UGUAGUUUC UUUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -17.0993 kcal/mol@LB@Unfolding Energy - mRNA 3.91468 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 34 -- 51@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 5 -- 11@LB@ |
9 |
0.0002541 |
0.09908 |
b4000 |
hupA |
-15.77 |
0.017828 |
82 -- 110 |
1 -- 35 |
HU DNA-binding transcriptional regulator alpha subunit |
|
_____________81__________________________________111\n_____________|___________________________________|\n5'-UUU...UCUGG______UUUG_________________AA______UAUCG...CUG-3'\n______________UCUACA____GGGGGCG______AAAA__AGUGGC\n______________||:|||____||||:|:______||||__||||||\n______________AGGUGU____CCCCUGU______UUUU__UCACCG\n3'-UUU...ACCCG______UUUA_______AGUUUC____CG______-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
92 -- 98 |
19 -- 25 |
-28.6527 kcal/mol |
7.84855 kcal/mol |
5.03645 kcal/mol |
81 111@LB@ | |@LB@5'-UUU...UCUGG UUUG AA UAUCG...CUG-3'@LB@ UCUACA GGGGGCG AAAA AGUGGC@LB@ ||:||| ||||:|: |||| ||||||@LB@ AGGUGU CCCCUGU UUUU UCACCG@LB@3'-UUU...ACCCG UUUA AGUUUC CG -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -28.6527 kcal/mol@LB@Unfolding Energy - mRNA 7.84855 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 82 -- 110@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 19 -- 25@LB@ |
105 |
0.007004 |
0.2333 |
b4034 |
malE |
-12.62 |
0.093531 |
92 -- 123 |
2 -- 32 |
maltose transporter subunit |
|
_____________91_________________________________124\n_____________|__________________________________|\n5'-AGG...ACAAA____C_________________C___G__GA___AAAGA...UGG-3'\n______________GCGA_GGUGGGG_CGU_AGGGG_AAG_AG__UGG\n______________:|:|_::|||||_|:|_|::|:_|||_||__|||\n______________UGUU_UUACCCC_GUA_UUUCU_UUC_UC__ACC\n3'-UUU...CGAGG____________U___G_____U___G_______G-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
97 -- 103 |
22 -- 28 |
-24.1065 kcal/mol |
8.94734 kcal/mol |
2.53929 kcal/mol |
91 124@LB@ | |@LB@5'-AGG...ACAAA C C G GA AAAGA...UGG-3'@LB@ GCGA GGUGGGG CGU AGGGG AAG AG UGG@LB@ :|:| ::||||| |:| |::|: ||| || |||@LB@ UGUU UUACCCC GUA UUUCU UUC UC ACC@LB@3'-UUU...CGAGG U G U G G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -24.1065 kcal/mol@LB@Unfolding Energy - mRNA 8.94734 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 92 -- 123@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 22 -- 28@LB@ |
27 |
0.001238 |
0.1512 |
b4045 |
yjbJ |
-9.99 |
0.275707 |
259 -- 267 |
19 -- 28 |
stress-induced protein UPF0337 family |
|
_____________258________268\n_____________|__________|\n5'-CGU...AGAGC__________AACUG...AAG-3'\n______________AAUGGGG_CA\n______________|||||||_||\n______________UUACCCC_GU\n3'-UUU...GUGUU_______U__AGUUU...CCG-5'\n_____________|__________|\n_____________29_________18\n |
259 -- 265 |
22 -- 28 |
-11.8839 kcal/mol |
1.24365 kcal/mol |
0.649553 kcal/mol |
258 268@LB@ | |@LB@5'-CGU...AGAGC AACUG...AAG-3'@LB@ AAUGGGG CA@LB@ ||||||| ||@LB@ UUACCCC GU@LB@3'-UUU...GUGUU U AGUUU...CCG-5'@LB@ | |@LB@ 29 18@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -11.8839 kcal/mol@LB@Unfolding Energy - mRNA 1.24365 kcal/mol@LB@Unfolding Energy - sRNA 0.649553 kcal/mol@LB@@LB@Position - mRNA 259 -- 267@LB@Position - sRNA 19 -- 28@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 22 -- 28@LB@ |
136 |
0.00981 |
0.2504 |
b4063 |
soxR |
-14.24 |
0.041834 |
39 -- 60 |
1 -- 21 |
redox-sensitive transcriptional activator of soxS; autorepressor |
|
_____________38_____________________61\n_____________|______________________|\n5'-GCA...CGACU_______U_UU______C____CAAUA...GUA-3'\n______________ACAUCAA_G__AAGCGG_UGGU\n______________|||||||_|__||||:|_|||:\n______________UGUAGUU_C__UUCGUC_ACCG\n3'-UUU...ACCCC_______U_UU___________-5'\n_____________|_____________________|\n_____________22____________________1\n |
39 -- 45 |
15 -- 21 |
-21.0533 kcal/mol |
5.29766 kcal/mol |
1.51103 kcal/mol |
38 61@LB@ | |@LB@5'-GCA...CGACU U UU C CAAUA...GUA-3'@LB@ ACAUCAA G AAGCGG UGGU@LB@ ||||||| | ||||:| |||:@LB@ UGUAGUU C UUCGUC ACCG@LB@3'-UUU...ACCCC U UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.0533 kcal/mol@LB@Unfolding Energy - mRNA 5.29766 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 15 -- 21@LB@ |
59 |
0.003042 |
0.1789 |
b4132 |
cadB |
-12.03 |
0.121895 |
256 -- 272 |
4 -- 32 |
putative lysine/cadaverine transporter |
|
_____________255___________________________273\n_____________|_____________________________|\n5'-UCA...CGGUA___U_________________________AUUGC...CAA-3'\n______________AUA_GAUGGGGA____________GCGGU\n______________|:|_:|||||||____________||:||\n______________UGU_UUACCCCU____________CGUCA\n3'-UUU...CGAGG___U________GUAGUUUCUUUU_____CCG-5'\n_____________|_____________________________|\n_____________33____________________________3\n |
261 -- 267 |
21 -- 27 |
-16.7324 kcal/mol |
2.16267 kcal/mol |
2.53583 kcal/mol |
255 273@LB@ | |@LB@5'-UCA...CGGUA U AUUGC...CAA-3'@LB@ AUA GAUGGGGA GCGGU@LB@ |:| :||||||| ||:||@LB@ UGU UUACCCCU CGUCA@LB@3'-UUU...CGAGG U GUAGUUUCUUUU CCG-5'@LB@ | |@LB@ 33 3@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -16.7324 kcal/mol@LB@Unfolding Energy - mRNA 2.16267 kcal/mol@LB@Unfolding Energy - sRNA 2.53583 kcal/mol@LB@@LB@Position - mRNA 256 -- 272@LB@Position - sRNA 4 -- 32@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 21 -- 27@LB@ |
33 |
0.001538 |
0.1635 |
b4141 |
yjeH |
-13.95 |
0.048780 |
254 -- 275 |
1 -- 22 |
putative transporter |
|
_____________253____________________276\n_____________|______________________|\n5'-CAG...CUAUC_______UUAUU_____C____GUGUU...CUG-3'\n______________GACGUCA_____AGGCA_UGGC\n______________|||:|||_____|:|||_||||\n______________CUGUAGU_____UUCGU_ACCG\n3'-UUU...UACCC_______UUCUU_____C____-5'\n_____________|_____________________|\n_____________23____________________1\n |
254 -- 260 |
16 -- 22 |
-22.2624 kcal/mol |
6.77205 kcal/mol |
1.54023 kcal/mol |
253 276@LB@ | |@LB@5'-CAG...CUAUC UUAUU C GUGUU...CUG-3'@LB@ GACGUCA AGGCA UGGC@LB@ |||:||| |:||| ||||@LB@ CUGUAGU UUCGU ACCG@LB@3'-UUU...UACCC UUCUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -22.2624 kcal/mol@LB@Unfolding Energy - mRNA 6.77205 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 254 -- 275@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 16 -- 22@LB@ |
173 |
0.01269 |
0.2504 |
b4172 |
hfq |
-12.44 |
0.101529 |
181 -- 205 |
1 -- 21 |
global sRNA chaperone; HF-I host factor for RNA phage Q beta replication |
|
_____________180_______________________206\n_____________|_________________________|\n5'-GAA...AAUAA____A__________AG__AA____UAAGG...AAG-3'\n______________GCAU_UAAGGAAAAG__AG__UGGC\n______________:|||_:||:||||||__||__||||\n______________UGUA_GUUUCUUUUC__UC__ACCG\n3'-UUU...ACCCC_______________G_________-5'\n_____________|________________________|\n_____________22_______________________1\n |
189 -- 195 |
8 -- 14 |
-17.6301 kcal/mol |
3.67752 kcal/mol |
1.51103 kcal/mol |
180 206@LB@ | |@LB@5'-GAA...AAUAA A AG AA UAAGG...AAG-3'@LB@ GCAU UAAGGAAAAG AG UGGC@LB@ :||| :||:|||||| || ||||@LB@ UGUA GUUUCUUUUC UC ACCG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -17.6301 kcal/mol@LB@Unfolding Energy - mRNA 3.67752 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 181 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 8 -- 14@LB@ |
188 |
0.01388 |
0.2529 |
b4198 |
ulaF |
-10.93 |
0.193396 |
24 -- 37 |
2 -- 17 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________23_______________38\n_____________|________________|\n5'-GUC...UUUGG______U_________AUUUC...GCG-3'\n______________CGAAGG___GUAGUGG\n______________|:|||:___|:|||||\n______________GUUUCU___CGUCACC\n3'-UUU...CUGUA______UUU_______G-5'\n_____________|________________|\n_____________18_______________1\n |
31 -- 37 |
2 -- 8 |
-15.3961 kcal/mol |
3.02615 kcal/mol |
1.43836 kcal/mol |
23 38@LB@ | |@LB@5'-GUC...UUUGG U AUUUC...GCG-3'@LB@ CGAAGG GUAGUGG@LB@ |:|||: |:|||||@LB@ GUUUCU CGUCACC@LB@3'-UUU...CUGUA UUU G-5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -15.3961 kcal/mol@LB@Unfolding Energy - mRNA 3.02615 kcal/mol@LB@Unfolding Energy - sRNA 1.43836 kcal/mol@LB@@LB@Position - mRNA 24 -- 37@LB@Position - sRNA 2 -- 17@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 2 -- 8@LB@ |
11 |
0.0003708 |
0.1087 |
b4201 |
priB |
-14.90 |
0.029310 |
176 -- 193 |
6 -- 26 |
primosomal protein N |
|
_____________175___________________194\n_____________|_____________________|\n5'-AGG...GAAGC__________U__________AUUUC...AUC-3'\n______________UGGGGAU_UC___GAAGAGUA\n______________||||||:_||___|||:||:|\n______________ACCCCUG_AG___CUUUUCGU\n3'-UUU...GUUUU_______U__UUU________CACCG-5'\n_____________|_____________________|\n_____________27____________________5\n |
187 -- 193 |
6 -- 12 |
-19.0189 kcal/mol |
3.41067 kcal/mol |
0.706421 kcal/mol |
175 194@LB@ | |@LB@5'-AGG...GAAGC U AUUUC...AUC-3'@LB@ UGGGGAU UC GAAGAGUA@LB@ ||||||: || |||:||:|@LB@ ACCCCUG AG CUUUUCGU@LB@3'-UUU...GUUUU U UUU CACCG-5'@LB@ | |@LB@ 27 5@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -19.0189 kcal/mol@LB@Unfolding Energy - mRNA 3.41067 kcal/mol@LB@Unfolding Energy - sRNA 0.706421 kcal/mol@LB@@LB@Position - mRNA 176 -- 193@LB@Position - sRNA 6 -- 26@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 6 -- 12@LB@ |
192 |
0.01406 |
0.2529 |
b4220 |
tamA |
-13.04 |
0.076745 |
183 -- 206 |
1 -- 23 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________182______________________207\n_____________|________________________|\n5'-CGC...AAAAA_______C_______AAU___C__UAUAU...GAC-3'\n______________GGAUAUU_AGGAGAA___GUG_GC\n______________|||:||:_|:||:||___|||_||\n______________CCUGUAG_UUCUUUU___CAC_CG\n3'-UUU...UUACC_______U_______CGU______-5'\n_____________|_______________________|\n_____________24______________________1\n |
191 -- 197 |
9 -- 15 |
-18.7095 kcal/mol |
4.09087 kcal/mol |
1.57928 kcal/mol |
182 207@LB@ | |@LB@5'-CGC...AAAAA C AAU C UAUAU...GAC-3'@LB@ GGAUAUU AGGAGAA GUG GC@LB@ |||:||: |:||:|| ||| ||@LB@ CCUGUAG UUCUUUU CAC CG@LB@3'-UUU...UUACC U CGU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -18.7095 kcal/mol@LB@Unfolding Energy - mRNA 4.09087 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 183 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 9 -- 15@LB@ |
64 |
0.003422 |
0.1851 |
b4238 |
nrdD |
-18.31 |
0.003326 |
69 -- 106 |
1 -- 34 |
anaerobic ribonucleoside-triphosphate reductase |
|
_____________68_____________________________________107\n_____________|______________________________________|\n5'-UAU...GCUCC________AA__U_C_______U___U______A____GAUUG...UCG-3'\n______________CCACGAAA__GG_G_GGCGUUG_GGA_AAGCGG_UGGC\n______________||||:|||__||_|_|:|:|::_:||_||||:|_||||\n______________GGUGUUUU__CC_C_CUGUAGU_UCU_UUCGUC_ACCG\n3'-UUU...CCCGA________A_____________U___U___________-5'\n_____________|_____________________________________|\n_____________35____________________________________1\n |
84 -- 90 |
16 -- 22 |
-34.2754 kcal/mol |
11.6957 kcal/mol |
4.26884 kcal/mol |
68 107@LB@ | |@LB@5'-UAU...GCUCC AA U C U U A GAUUG...UCG-3'@LB@ CCACGAAA GG G GGCGUUG GGA AAGCGG UGGC@LB@ ||||:||| || | |:|:|:: :|| ||||:| ||||@LB@ GGUGUUUU CC C CUGUAGU UCU UUCGUC ACCG@LB@3'-UUU...CCCGA A U U -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -18.31 kcal/mol@LB@Hybridization Energy -34.2754 kcal/mol@LB@Unfolding Energy - mRNA 11.6957 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 69 -- 106@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 16 -- 22@LB@ |
4 |
1.99e-05 |
0.01653 |
b4255 |
rraB |
-17.36 |
0.006479 |
180 -- 205 |
1 -- 23 |
protein inhibitor of RNase E |
|
_____________179________________________206\n_____________|__________________________|\n5'-GAG...CGGCA_________GA____U____CA____AAACC...CCA-3'\n______________GGACAUUAA__GGAA_GAGC__UGGC\n______________||||||:||__:|||_:|||__||||\n______________CCUGUAGUU__UCUU_UUCG__ACCG\n3'-UUU...UUACC____________________UC____-5'\n_____________|_________________________|\n_____________24________________________1\n |
182 -- 188 |
15 -- 21 |
-24.3176 kcal/mol |
5.37332 kcal/mol |
1.57928 kcal/mol |
179 206@LB@ | |@LB@5'-GAG...CGGCA GA U CA AAACC...CCA-3'@LB@ GGACAUUAA GGAA GAGC UGGC@LB@ ||||||:|| :||| :||| ||||@LB@ CCUGUAGUU UCUU UUCG ACCG@LB@3'-UUU...UUACC UC -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -17.36 kcal/mol@LB@Hybridization Energy -24.3176 kcal/mol@LB@Unfolding Energy - mRNA 5.37332 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 15 -- 21@LB@ |
178 |
0.01293 |
0.2504 |
b4258 |
valS |
-13.78 |
0.053235 |
248 -- 266 |
1 -- 21 |
valyl-tRNA synthetase |
|
_____________247___________________267\n_____________|_____________________|\n5'-AUC...UACGA_____U_______________UACUU...AAA-3'\n______________GCA_C_GGGAAAAGCAG_GGC\n______________:||_|_::|||||||||_|||\n______________UGU_G_UUCUUUUCGUC_CCG\n3'-UUU...ACCCC___A_U___________A___-5'\n_____________|____________________|\n_____________22___________________1\n |
257 -- 263 |
5 -- 11 |
-22.196 kcal/mol |
6.90555 kcal/mol |
1.51103 kcal/mol |
247 267@LB@ | |@LB@5'-AUC...UACGA U UACUU...AAA-3'@LB@ GCA C GGGAAAAGCAG GGC@LB@ :|| | ::||||||||| |||@LB@ UGU G UUCUUUUCGUC CCG@LB@3'-UUU...ACCCC A U A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -22.196 kcal/mol@LB@Unfolding Energy - mRNA 6.90555 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 248 -- 266@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 5 -- 11@LB@ |
43 |
0.00215 |
0.1648 |
b4268 |
idnK |
-13.73 |
0.054596 |
180 -- 268 |
1 -- 79 |
D-gluconate kinase thermosensitive |
b3437 |
_____________179______________________________________________________________________________________________269\n_____________|________________________________________________________________________________________________|\n5'-AGG...AGGUA___U______GGA______________________U_AAAGCUUUAUU_________GU____G_______UAAA_______UUGGU____A____UGCCG...AUG-3'\n______________AGA_GAUUCA___GAUUUU______AAAUGGCGGG_G___________UUGAUGGGC__UUCA_GGAGUGG____ACAUUAA_____AGCA__GGU\n______________|:|_:|::||___:|::||______||||||||||_|___________|||||||||__|:||_::|:|||____||||:||_____||||__||:\n______________UUU_UUGGGU___UUGGAA______UUUACCGCCC_C___________AACUACCCG__AGGU_UUUUACC____UGUAGUU_____UCGU__CCG\n___________3'-___U______AG_______CUUGGC______________________________________G_______CC_________UCUUU____CA___-5'\n______________|______________________________________________________________________________________________|\n______________79_____________________________________________________________________________________________1\n |
249 -- 255 |
15 -- 21 |
-57.0668 kcal/mol |
16.9855 kcal/mol |
26.3515 kcal/mol |
179 269@LB@ | |@LB@5'-AGG...AGGUA U GGA U AAAGCUUUAUU GU G UAAA UUGGU A UGCCG...AUG-3'@LB@ AGA GAUUCA GAUUUU AAAUGGCGGG G UUGAUGGGC UUCA GGAGUGG ACAUUAA AGCA GGU@LB@ |:| :|::|| :|::|| |||||||||| | ||||||||| |:|| ::|:||| ||||:|| |||| ||:@LB@ UUU UUGGGU UUGGAA UUUACCGCCC C AACUACCCG AGGU UUUUACC UGUAGUU UCGU CCG@LB@ 3'- U AG CUUGGC G CC UCUUU CA -5'@LB@ | |@LB@ 79 1@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -57.0668 kcal/mol@LB@Unfolding Energy - mRNA 16.9855 kcal/mol@LB@Unfolding Energy - sRNA 26.3515 kcal/mol@LB@@LB@Position - mRNA 180 -- 268@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 15 -- 21@LB@ |
24 |
0.0009771 |
0.1361 |
b4295 |
yjhU |
-16.20 |
0.013710 |
198 -- 226 |
5 -- 30 |
putative DNA-binding transcriptional regulator; KpLE2 phage-like element |
b1512 |
_____________197___________________________227\n_____________|_____________________________|\n5'-GUA...AUACA_______AUA__G______C___C_____CCUGU...UUG-3'\n______________AAAGUGG___GA_AUCAAA_AAA_AGCAG\n______________|||:|||___||_||||||_|||_|||||\n______________UUUUACC___CU_UAGUUU_UUU_UCGUC\n3'-UUU...AGGUG_______C____G______C_________ACCG-5'\n_____________|_____________________________|\n_____________31____________________________4\n |
198 -- 204 |
24 -- 30 |
-21.4023 kcal/mol |
2.69702 kcal/mol |
2.50278 kcal/mol |
197 227@LB@ | |@LB@5'-GUA...AUACA AUA G C C CCUGU...UUG-3'@LB@ AAAGUGG GA AUCAAA AAA AGCAG@LB@ |||:||| || |||||| ||| |||||@LB@ UUUUACC CU UAGUUU UUU UCGUC@LB@3'-UUU...AGGUG C G C ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -21.4023 kcal/mol@LB@Unfolding Energy - mRNA 2.69702 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 198 -- 226@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 24 -- 30@LB@ |
65 |
0.00343 |
0.1851 |
b4363 |
yjjB |
-10.89 |
0.196296 |
181 -- 193 |
20 -- 32 |
DUF3815 family inner membrane protein |
|
_____________180___________194\n_____________|_____________|\n5'-ACU...CACUG____UU_______UACGC...GGG-3'\n______________ACGA__UGGGGGC\n______________||:|__|||||:|\n______________UGUU__ACCCCUG\n3'-UUU...CGAGG____UU_______UAGUU...CCG-5'\n_____________|_____________|\n_____________33____________19\n |
187 -- 193 |
20 -- 26 |
-17.0561 kcal/mol |
4.01516 kcal/mol |
2.14699 kcal/mol |
180 194@LB@ | |@LB@5'-ACU...CACUG UU UACGC...GGG-3'@LB@ ACGA UGGGGGC@LB@ ||:| |||||:|@LB@ UGUU ACCCCUG@LB@3'-UUU...CGAGG UU UAGUU...CCG-5'@LB@ | |@LB@ 33 19@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -17.0561 kcal/mol@LB@Unfolding Energy - mRNA 4.01516 kcal/mol@LB@Unfolding Energy - sRNA 2.14699 kcal/mol@LB@@LB@Position - mRNA 181 -- 193@LB@Position - sRNA 20 -- 32@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 20 -- 26@LB@ |
122 |
0.008886 |
0.2491 |
b4366 |
bglJ |
-14.76 |
0.031763 |
19 -- 32 |
15 -- 29 |
bgl operon transcriptional activator |
|
_____________18______________33\n_____________|_______________|\n5'-CUG...GUAAA_______________CCAGA...GUA-3'\n______________GGAUGGGG_CAUCAA\n______________::||||||_||||||\n______________UUUACCCC_GUAGUU\n3'-UUU...GGUGU________U______UCUUU...CCG-5'\n_____________|_______________|\n_____________30______________14\n |
20 -- 26 |
22 -- 28 |
-19.2746 kcal/mol |
3.84044 kcal/mol |
0.677927 kcal/mol |
18 33@LB@ | |@LB@5'-CUG...GUAAA CCAGA...GUA-3'@LB@ GGAUGGGG CAUCAA@LB@ ::|||||| ||||||@LB@ UUUACCCC GUAGUU@LB@3'-UUU...GGUGU U UCUUU...CCG-5'@LB@ | |@LB@ 30 14@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -19.2746 kcal/mol@LB@Unfolding Energy - mRNA 3.84044 kcal/mol@LB@Unfolding Energy - sRNA 0.677927 kcal/mol@LB@@LB@Position - mRNA 19 -- 32@LB@Position - sRNA 15 -- 29@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 22 -- 28@LB@ |
198 |
0.01428 |
0.2531 |
b4393 |
trpR |
-20.45 |
0.000581 |
86 -- 104 |
16 -- 34 |
transcriptional repressor tryptophan-binding |
|
_____________85__________________105\n_____________|___________________|\n5'-GAG...GAGCG___________________UUACU...AUC-3'\n______________CCACGGAAUGGGGACGUCG\n______________||||::|||||||||:||:\n______________GGUGUUUUACCCCUGUAGU\n3'-UUU...CCCGA___________________UUCUU...CCG-5'\n_____________|___________________|\n_____________35__________________15\n |
98 -- 104 |
16 -- 22 |
-32.2935 kcal/mol |
7.91935 kcal/mol |
3.92811 kcal/mol |
85 105@LB@ | |@LB@5'-GAG...GAGCG UUACU...AUC-3'@LB@ CCACGGAAUGGGGACGUCG@LB@ ||||::|||||||||:||:@LB@ GGUGUUUUACCCCUGUAGU@LB@3'-UUU...CCCGA UUCUU...CCG-5'@LB@ | |@LB@ 35 15@LB@@LB@@LB@Energy -20.45 kcal/mol@LB@Hybridization Energy -32.2935 kcal/mol@LB@Unfolding Energy - mRNA 7.91935 kcal/mol@LB@Unfolding Energy - sRNA 3.92811 kcal/mol@LB@@LB@Position - mRNA 86 -- 104@LB@Position - sRNA 16 -- 34@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 16 -- 22@LB@ |
67 |
0.003548 |
0.1858 |
b4412 |
hokC |
-18.22 |
0.003564 |
16 -- 36 |
7 -- 32 |
toxic membrane protein small |
b1562 b0018 |
_____________15_________________________37\n_____________|__________________________|\n5'-AUU...AUAAA__________________________GAUAU...ACA-3'\n______________ACAAAAUGGG____UUAAAGAGA_GC\n______________||||||||||____|:|||||:|_||\n______________UGUUUUACCC____AGUUUCUUU_CG\n3'-UUU...CGAGG__________CUGU_________U__UCACCG-5'\n_____________|__________________________|\n_____________33_________________________6\n |
28 -- 34 |
10 -- 16 |
-22.2189 kcal/mol |
1.46836 kcal/mol |
2.53437 kcal/mol |
15 37@LB@ | |@LB@5'-AUU...AUAAA GAUAU...ACA-3'@LB@ ACAAAAUGGG UUAAAGAGA GC@LB@ |||||||||| |:|||||:| ||@LB@ UGUUUUACCC AGUUUCUUU CG@LB@3'-UUU...CGAGG CUGU U UCACCG-5'@LB@ | |@LB@ 33 6@LB@@LB@@LB@Energy -18.22 kcal/mol@LB@Hybridization Energy -22.2189 kcal/mol@LB@Unfolding Energy - mRNA 1.46836 kcal/mol@LB@Unfolding Energy - sRNA 2.53437 kcal/mol@LB@@LB@Position - mRNA 16 -- 36@LB@Position - sRNA 7 -- 32@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 10 -- 16@LB@ |
85 |
0.0054 |
0.2147 |
b4461 |
yfjD |
-16.56 |
0.010978 |
60 -- 89 |
2 -- 27 |
UPF0053 family inner membrane protein |
|
_____________59______________________________90\n_____________|_______________________________|\n5'-GAA...CUGCU___________AUCAU______U________ACGCC...UCA-3'\n______________GUGGGGACAUU_____GAAGGA_GGC_GUGG\n______________:|||||||||:_____:|||:|_:||_||||\n______________UACCCCUGUAG_____UUUCUU_UCG_CACC\n3'-UUU...UGUUU______________________U___U____G-5'\n_____________|_______________________________|\n_____________28______________________________1\n |
64 -- 70 |
17 -- 23 |
-31.7913 kcal/mol |
12.7137 kcal/mol |
2.51866 kcal/mol |
59 90@LB@ | |@LB@5'-GAA...CUGCU AUCAU U ACGCC...UCA-3'@LB@ GUGGGGACAUU GAAGGA GGC GUGG@LB@ :|||||||||: :|||:| :|| ||||@LB@ UACCCCUGUAG UUUCUU UCG CACC@LB@3'-UUU...UGUUU U U G-5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -31.7913 kcal/mol@LB@Unfolding Energy - mRNA 12.7137 kcal/mol@LB@Unfolding Energy - sRNA 2.51866 kcal/mol@LB@@LB@Position - mRNA 60 -- 89@LB@Position - sRNA 2 -- 27@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 17 -- 23@LB@ |
99 |
0.006147 |
0.2179 |
b4477 |
dgoA |
-14.15 |
0.044006 |
176 -- 210 |
1 -- 31 |
2-oxo-3-deoxygalactonate 6-phosphate aldolase |
|
_____________175___________________________________211\n_____________|_____________________________________|\n5'-CAG...CAUUU____C___UAUAA___G_____CUCAU__________AAACU...UCG-3'\n______________CAGG_UGG_____GGA_CAUCG_______GCAGUGGC\n______________||::_|||_____|||_||||:_______||||||||\n______________GUUU_ACC_____CCU_GUAGU_______CGUCACCG\n3'-UUU...GAGGU____U_________________UUCUUUU________-5'\n_____________|____________________________________|\n_____________32___________________________________1\n |
204 -- 210 |
1 -- 7 |
-26.5297 kcal/mol |
9.84206 kcal/mol |
2.53929 kcal/mol |
175 211@LB@ | |@LB@5'-CAG...CAUUU C UAUAA G CUCAU AAACU...UCG-3'@LB@ CAGG UGG GGA CAUCG GCAGUGGC@LB@ ||:: ||| ||| ||||: ||||||||@LB@ GUUU ACC CCU GUAGU CGUCACCG@LB@3'-UUU...GAGGU U UUCUUUU -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -26.5297 kcal/mol@LB@Unfolding Energy - mRNA 9.84206 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 176 -- 210@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 1 -- 7@LB@ |
131 |
0.009354 |
0.2491 |
b4478 |
dgoD |
-14.24 |
0.041949 |
180 -- 199 |
1 -- 22 |
D-galactonate dehydratase |
|
_____________179____________________200\n_____________|______________________|\n5'-AAA...GUUAA_____AUC______________AAUGA...UGA-3'\n______________GGCGU____GAGAGGCAGUG_C\n______________|:|:|____||:|:||||||_|\n______________CUGUA____CUUUUCGUCAC_G\n3'-UUU...UACCC_____GUUU___________C_-5'\n_____________|_____________________|\n_____________23____________________1\n |
192 -- 198 |
3 -- 9 |
-21.1696 kcal/mol |
5.38995 kcal/mol |
1.54023 kcal/mol |
179 200@LB@ | |@LB@5'-AAA...GUUAA AUC AAUGA...UGA-3'@LB@ GGCGU GAGAGGCAGUG C@LB@ |:|:| ||:|:|||||| |@LB@ CUGUA CUUUUCGUCAC G@LB@3'-UUU...UACCC GUUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.1696 kcal/mol@LB@Unfolding Energy - mRNA 5.38995 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 3 -- 9@LB@ |
183 |
0.01318 |
0.2504 |
b4483 |
tatD |
-12.95 |
0.080004 |
100 -- 117 |
8 -- 25 |
quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase |
|
_____________99__________________118\n_____________|___________________|\n5'-CUG...GUAAA___C__A____________GAAAA...UCA-3'\n______________GGG_GA_AUC_GGGAAGAG\n______________|||_||_|||_::|||:||\n______________CCC_CU_UAG_UUCUUUUC\n3'-UUU...UUUUA______G___U________GUCACCG-5'\n_____________|___________________|\n_____________26__________________7\n |
111 -- 117 |
8 -- 14 |
-16.1661 kcal/mol |
2.51597 kcal/mol |
0.697717 kcal/mol |
99 118@LB@ | |@LB@5'-CUG...GUAAA C A GAAAA...UCA-3'@LB@ GGG GA AUC GGGAAGAG@LB@ ||| || ||| ::|||:||@LB@ CCC CU UAG UUCUUUUC@LB@3'-UUU...UUUUA G U GUCACCG-5'@LB@ | |@LB@ 26 7@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -16.1661 kcal/mol@LB@Unfolding Energy - mRNA 2.51597 kcal/mol@LB@Unfolding Energy - sRNA 0.697717 kcal/mol@LB@@LB@Position - mRNA 100 -- 117@LB@Position - sRNA 8 -- 25@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 8 -- 14@LB@ |
166 |
0.01216 |
0.2504 |
b4485 |
ytfR |
-12.60 |
0.094393 |
18 -- 41 |
9 -- 34 |
putative sugar ABC transporter ATPase |
|
_____________17_________________________42\n_____________|__________________________|\n5'-CCU...UGAUA________GAA_______________AGAAA...GCC-3'\n______________CCGCAAAA____GA_AUUAGAGAAGA\n______________||:|||||____||_||:|:||||:|\n______________GGUGUUUU____CU_UAGUUUCUUUU\n3'-UUU...CCCGA________ACCC__G___________CGUCACCG-5'\n_____________|__________________________|\n_____________35_________________________8\n |
35 -- 41 |
9 -- 15 |
-17.8797 kcal/mol |
1.35017 kcal/mol |
3.92941 kcal/mol |
17 42@LB@ | |@LB@5'-CCU...UGAUA GAA AGAAA...GCC-3'@LB@ CCGCAAAA GA AUUAGAGAAGA@LB@ ||:||||| || ||:|:||||:|@LB@ GGUGUUUU CU UAGUUUCUUUU@LB@3'-UUU...CCCGA ACCC G CGUCACCG-5'@LB@ | |@LB@ 35 8@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -17.8797 kcal/mol@LB@Unfolding Energy - mRNA 1.35017 kcal/mol@LB@Unfolding Energy - sRNA 3.92941 kcal/mol@LB@@LB@Position - mRNA 18 -- 41@LB@Position - sRNA 9 -- 34@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
106 |
0.007048 |
0.2333 |
b4512 |
ybdD |
-9.12 |
0.369799 |
33 -- 54 |
1 -- 25 |
DUF466 family protein |
b4353 |
_____________32________________________55\n_____________|_________________________|\n5'-GCA...GAGGG___________C___U_________UUAGU...GGG-3'\n______________GGGGAUGUUGG_GAA__GU__UGGC\n______________|||||::|:::_|||__|:__||||\n______________CCCCUGUAGUU_CUU__CG__ACCG\n3'-UUU...UUUUA___________U___UU__UC____-5'\n_____________|________________________|\n_____________26_______________________1\n |
36 -- 42 |
16 -- 22 |
-21.5624 kcal/mol |
9.92515 kcal/mol |
2.51748 kcal/mol |
32 55@LB@ | |@LB@5'-GCA...GAGGG C U UUAGU...GGG-3'@LB@ GGGGAUGUUGG GAA GU UGGC@LB@ |||||::|::: ||| |: ||||@LB@ CCCCUGUAGUU CUU CG ACCG@LB@3'-UUU...UUUUA U UU UC -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.5624 kcal/mol@LB@Unfolding Energy - mRNA 9.92515 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 33 -- 54@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 16 -- 22@LB@ |