| 144 |
0.006569 |
0.1605 |
b2900 |
yqfB |
-12.46 |
0.083290 |
200 -- 238 |
34 -- 70 |
UPF0267 family protein |
|
_____________199_______________________________________239\n_____________|_________________________________________|\n5'-UUC...AGUAC________CAAA__ACA________UUUUUCAAC_______GGAUG...UCA-3'\n______________CAUGCAGC____CG_____UCACUU_________GUUUCCA\n______________||::||||____||_____|||||:_________:||||||\n______________GUGUGUCG____GC_____AGUGAG_________UAAAGGU\n3'-UUU...CUGAU________UUAA__AACAA______UCCCC___________ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________71________________________________________33\n |
232 -- 238 |
34 -- 40 |
-21.1736 kcal/mol |
3.92715 kcal/mol |
4.79237 kcal/mol |
199 239@LB@ | |@LB@5'-UUC...AGUAC CAAA ACA UUUUUCAAC GGAUG...UCA-3'@LB@ CAUGCAGC CG UCACUU GUUUCCA@LB@ ||::|||| || |||||: :||||||@LB@ GUGUGUCG GC AGUGAG UAAAGGU@LB@3'-UUU...CUGAU UUAA AACAA UCCCC ACGAA...GCA-5'@LB@ | |@LB@ 71 33@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -21.1736 kcal/mol@LB@Unfolding Energy - mRNA 3.92715 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 200 -- 238@LB@Position - sRNA 34 -- 70@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 193 |
0.0098 |
0.1776 |
b0757 |
galK |
-12.45 |
0.083592 |
134 -- 176 |
33 -- 76 |
galactokinase |
|
_____________133____________________________________________177\n_____________|______________________________________________|\n5'-CAU...ACCGC________G_______AG__U___CGCG__G____C____A_____UUUCG...GUG-3'\n______________AGA__ACA_GCAGCAG__CG_UUG____CA_UCAG__GAU_UCCAU\n______________|||__|||_:|||||:__||_|||____||_||||__|||_|||||\n______________UCU__UGU_UGUCGUU__GC_AAC____GU_AGUC__CUA_AGGUA\n3'-UUU...CCGUU___GA___G_______AA______AAA___G____CC___A_____CGAAU...GCA-5'\n_____________|______________________________________________|\n_____________77_____________________________________________32\n |
141 -- 147 |
61 -- 67 |
-31.8657 kcal/mol |
14.6029 kcal/mol |
4.81602 kcal/mol |
133 177@LB@ | |@LB@5'-CAU...ACCGC G AG U CGCG G C A UUUCG...GUG-3'@LB@ AGA ACA GCAGCAG CG UUG CA UCAG GAU UCCAU@LB@ ||| ||| :|||||: || ||| || |||| ||| |||||@LB@ UCU UGU UGUCGUU GC AAC GU AGUC CUA AGGUA@LB@3'-UUU...CCGUU GA G AA AAA G CC A CGAAU...GCA-5'@LB@ | |@LB@ 77 32@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -31.8657 kcal/mol@LB@Unfolding Energy - mRNA 14.6029 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 134 -- 176@LB@Position - sRNA 33 -- 76@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 175 |
0.008768 |
0.1747 |
b0658 |
ybeX |
-12.37 |
0.086971 |
210 -- 256 |
35 -- 75 |
putative ion transport |
|
_____________209_____________________________________________257\n_____________|_______________________________________________|\n5'-UUA...GCGAC___AAUU___________GACACGAUAAG__ACA__AA_________CUCCC...ACC-3'\n______________GAC____CACACAGUAGU___________CA___AG__GGGAUUUUU\n______________|||____|||||||:|:|___________||___||__|||||||::\n______________CUG____GUGUGUCGUUA___________GU___UC__CCCUAAAGG\n3'-UUU...CGUUU___AU_____________AGCAACAAA____GAG_____________UACGA...GCA-5'\n_____________|_______________________________________________|\n_____________76______________________________________________34\n |
249 -- 255 |
36 -- 42 |
-26.9454 kcal/mol |
9.77444 kcal/mol |
4.80541 kcal/mol |
209 257@LB@ | |@LB@5'-UUA...GCGAC AAUU GACACGAUAAG ACA AA CUCCC...ACC-3'@LB@ GAC CACACAGUAGU CA AG GGGAUUUUU@LB@ ||| |||||||:|:| || || |||||||::@LB@ CUG GUGUGUCGUUA GU UC CCCUAAAGG@LB@3'-UUU...CGUUU AU AGCAACAAA GAG UACGA...GCA-5'@LB@ | |@LB@ 76 34@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -26.9454 kcal/mol@LB@Unfolding Energy - mRNA 9.77444 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 210 -- 256@LB@Position - sRNA 35 -- 75@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 125 |
0.005556 |
0.1564 |
b3384 |
trpS |
-12.26 |
0.091693 |
207 -- 244 |
40 -- 100 |
tryptophanyl-tRNA synthetase |
|
_____________206___________________________________________________________245\n_____________|_____________________________________________________________|\n5'-ACA...UGACU___________UUUUA__________________________________________U__AUUGA...AUG-3'\n______________AAGCCCAUCGU_____GUGG__________CGCACAGC____________C_CUCAGG_GA\n______________|||||||||||_____:|||__________|:||||||____________|_||||||_||\n______________UUCGGGUAGCA_____UACC__________GUGUGUCG____________G_GAGUCC_CU\n______3'-UUUUU___________CCCUC____CGUUUCUGAU________UUAAGCAACAAA_U______C__AAAGG...GCA-5'\n_____________|_____________________________________________________________|\n_____________101___________________________________________________________39\n |
228 -- 234 |
63 -- 69 |
-41.2838 kcal/mol |
11.4457 kcal/mol |
17.5818 kcal/mol |
206 245@LB@ | |@LB@5'-ACA...UGACU UUUUA U AUUGA...AUG-3'@LB@ AAGCCCAUCGU GUGG CGCACAGC C CUCAGG GA@LB@ ||||||||||| :||| |:|||||| | |||||| ||@LB@ UUCGGGUAGCA UACC GUGUGUCG G GAGUCC CU@LB@ 3'-UUUUU CCCUC CGUUUCUGAU UUAAGCAACAAA U C AAAGG...GCA-5'@LB@ | |@LB@ 101 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -41.2838 kcal/mol@LB@Unfolding Energy - mRNA 11.4457 kcal/mol@LB@Unfolding Energy - sRNA 17.5818 kcal/mol@LB@@LB@Position - mRNA 207 -- 244@LB@Position - sRNA 40 -- 100@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 104 |
0.004609 |
0.1538 |
b3405 |
ompR |
-12.19 |
0.094658 |
154 -- 190 |
42 -- 77 |
response regulator in two-component regulatory system with EnvZ |
|
_____________153___________________________________191\n_____________|_____________________________________|\n5'-AAU...UUUUU____A_______UUA___A______CGAAC___U___AGUAC...GCG-3'\n______________AAGA_UACACGC___CAA_UUGUUG_____CUU_GGG\n______________||||_|||||:|___|||_|:||||_____||:_|||\n______________UUCU_AUGUGUG___GUU_AGCAAC_____GAG_CCC\n3'-UUU...CCCGU____G_______UC____A______AAAGU___U___CUAAA...GCA-5'\n_____________|_____________________________________|\n_____________78____________________________________41\n |
159 -- 165 |
66 -- 72 |
-25.6517 kcal/mol |
8.69679 kcal/mol |
4.7648 kcal/mol |
153 191@LB@ | |@LB@5'-AAU...UUUUU A UUA A CGAAC U AGUAC...GCG-3'@LB@ AAGA UACACGC CAA UUGUUG CUU GGG@LB@ |||| |||||:| ||| |:|||| ||: |||@LB@ UUCU AUGUGUG GUU AGCAAC GAG CCC@LB@3'-UUU...CCCGU G UC A AAAGU U CUAAA...GCA-5'@LB@ | |@LB@ 78 41@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -25.6517 kcal/mol@LB@Unfolding Energy - mRNA 8.69679 kcal/mol@LB@Unfolding Energy - sRNA 4.7648 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 42 -- 77@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 110 |
0.004806 |
0.1538 |
b1429 |
tehA |
-12.16 |
0.096068 |
32 -- 62 |
44 -- 75 |
potassium-tellurite ethidium and proflavin transporter |
|
_____________31_________________________________63\n_____________|__________________________________|\n5'-AAU...UUCCU___A__UAAA_________C___UC_________ACGAU...UUU-3'\n______________GAU_AC____GGC___UCG_UGU__UUCACUUAG\n______________||:_||____:||___|||_|||__||||||:||\n______________CUG_UG____UCG___AGC_ACA__AAGUGAGUC\n3'-UUU...CGUUU___A__UGUG___UUA___A______________CCCUA...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________43\n |
56 -- 62 |
44 -- 50 |
-20.5577 kcal/mol |
4.26011 kcal/mol |
4.13839 kcal/mol |
31 63@LB@ | |@LB@5'-AAU...UUCCU A UAAA C UC ACGAU...UUU-3'@LB@ GAU AC GGC UCG UGU UUCACUUAG@LB@ ||: || :|| ||| ||| ||||||:||@LB@ CUG UG UCG AGC ACA AAGUGAGUC@LB@3'-UUU...CGUUU A UGUG UUA A CCCUA...GCA-5'@LB@ | |@LB@ 76 43@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -20.5577 kcal/mol@LB@Unfolding Energy - mRNA 4.26011 kcal/mol@LB@Unfolding Energy - sRNA 4.13839 kcal/mol@LB@@LB@Position - mRNA 32 -- 62@LB@Position - sRNA 44 -- 75@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 87 |
0.003844 |
0.1538 |
b3124 |
garK |
-12.12 |
0.097757 |
2 -- 34 |
58 -- 88 |
glycerate kinase I |
|
_____________1_________________________________35\n_____________|_________________________________|\n__________5'-U_______AU_____C______A____A______AGGAA...AUG-3'\n______________GGAGAUG__GCAGG_ACUGCG_GCAG_UGGUUU\n______________|||||||__|||::_|||:|:_:|||_:::||:\n______________CCUCUAC__CGUUU_UGAUGU_UGUC_GUUAAG\n3'-UUU...AGCAC_______C______C______G___________CAACA...GCA-5'\n_____________|_________________________________|\n_____________89________________________________57\n |
2 -- 8 |
82 -- 88 |
-28.4892 kcal/mol |
6.08629 kcal/mol |
10.2803 kcal/mol |
1 35@LB@ | |@LB@ 5'-U AU C A A AGGAA...AUG-3'@LB@ GGAGAUG GCAGG ACUGCG GCAG UGGUUU@LB@ ||||||| |||:: |||:|: :||| :::||:@LB@ CCUCUAC CGUUU UGAUGU UGUC GUUAAG@LB@3'-UUU...AGCAC C C G CAACA...GCA-5'@LB@ | |@LB@ 89 57@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -28.4892 kcal/mol@LB@Unfolding Energy - mRNA 6.08629 kcal/mol@LB@Unfolding Energy - sRNA 10.2803 kcal/mol@LB@@LB@Position - mRNA 2 -- 34@LB@Position - sRNA 58 -- 88@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 11 |
9.086e-05 |
0.0245 |
b3337 |
bfd |
-12.11 |
0.098410 |
247 -- 280 |
34 -- 76 |
bacterioferritin-associated ferredoxin |
|
_____________246_________________________________________281\n_____________|___________________________________________|\n5'-GCG...UCGUC___________________UCCCC___________________GCAAU...UUC-3'\n______________AGGCUGUGCGC__CAGUUU______UCACUCG______UUCCA\n______________||:||:::|:|__||:||:______||||||:______|||||\n______________UCUGAUGUGUG__GUUAAG______AGUGAGU______AAGGU\n3'-UUU...CCGUU___________UC______CAACAA_______CCCCUA_____ACGAA...GCA-5'\n_____________|___________________________________________|\n_____________77__________________________________________33\n |
269 -- 275 |
45 -- 51 |
-24.9474 kcal/mol |
8.02269 kcal/mol |
4.816 kcal/mol |
246 281@LB@ | |@LB@5'-GCG...UCGUC UCCCC GCAAU...UUC-3'@LB@ AGGCUGUGCGC CAGUUU UCACUCG UUCCA@LB@ ||:||:::|:| ||:||: ||||||: |||||@LB@ UCUGAUGUGUG GUUAAG AGUGAGU AAGGU@LB@3'-UUU...CCGUU UC CAACAA CCCCUA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.9474 kcal/mol@LB@Unfolding Energy - mRNA 8.02269 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 247 -- 280@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 93 |
0.004161 |
0.1538 |
b4221 |
tamB |
-11.98 |
0.104509 |
154 -- 185 |
44 -- 78 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________153__________________________________186\n_____________|____________________________________|\n5'-ACC...CGGAU______GA____________ACA________A____UCUGG...AUC-3'\n______________AAAGAC___ACACGG__GUU____GUUUUAC_UCGG\n______________||||||___||||:|__:||____||||:||_||:|\n______________UUUCUG___UGUGUC__UAA____CAAAGUG_AGUC\n3'-UUU...ACCCG______AUG______GU___GCAA____________CCCUA...GCA-5'\n_____________|____________________________________|\n_____________79___________________________________43\n |
174 -- 180 |
48 -- 54 |
-22.2219 kcal/mol |
6.10136 kcal/mol |
4.13875 kcal/mol |
153 186@LB@ | |@LB@5'-ACC...CGGAU GA ACA A UCUGG...AUC-3'@LB@ AAAGAC ACACGG GUU GUUUUAC UCGG@LB@ |||||| ||||:| :|| ||||:|| ||:|@LB@ UUUCUG UGUGUC UAA CAAAGUG AGUC@LB@3'-UUU...ACCCG AUG GU GCAA CCCUA...GCA-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -22.2219 kcal/mol@LB@Unfolding Energy - mRNA 6.10136 kcal/mol@LB@Unfolding Energy - sRNA 4.13875 kcal/mol@LB@@LB@Position - mRNA 154 -- 185@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 161 |
0.00773 |
0.1668 |
b0945 |
pyrD |
-11.84 |
0.111523 |
258 -- 300 |
33 -- 77 |
dihydro-orotate oxidase FMN-linked |
|
_____________257____________________________________________300\n_____________|______________________________________________|\n5'-UGU...CUCAU___U____UUUU________A__CC__A____A_______ACG____-3'\n______________GAG_UUAC____CAGCAAUU_CG__GU_UUAC_____GGA___CCGU\n______________:||_:|||____||||||||_||__||_|:||_____|||___||:|\n______________UUC_GAUG____GUCGUUAA_GC__CA_AGUG_____CCU___GGUA\n3'-UUU...CCCGU___U____UGU____________AA__A____AGUCC___AAA____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________78______________________________________________32\n |
271 -- 277 |
59 -- 65 |
-22.2972 kcal/mol |
5.63827 kcal/mol |
4.81602 kcal/mol |
257 300@LB@ | |@LB@5'-UGU...CUCAU U UUUU A CC A A ACG -3'@LB@ GAG UUAC CAGCAAUU CG GU UUAC GGA CCGU@LB@ :|| :||| |||||||| || || |:|| ||| ||:|@LB@ UUC GAUG GUCGUUAA GC CA AGUG CCU GGUA@LB@3'-UUU...CCCGU U UGU AA A AGUCC AAA CGAAU...GCA-5'@LB@ | |@LB@ 78 32@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -22.2972 kcal/mol@LB@Unfolding Energy - mRNA 5.63827 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 33 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 59 -- 65@LB@ |
