| 99 |
0.004523 |
0.1538 |
b1516 |
lsrB |
-10.33 |
0.215118 |
8 -- 28 |
39 -- 59 |
autoinducer 2-binding protein |
|
_____________7______________________29\n_____________|______________________|\n____5'-ACCGCCA___CG___________U_____AUUUG...UUC-3'\n______________UUG__GUUUUAUU_AG_GGGAU\n______________|:|__||||:|:|_||_|||||\n______________AGC__CAAAGUGA_UC_CCCUA\n3'-UUU...CGUUA___AA________G________AAGGU...GCA-5'\n_____________|______________________|\n_____________60_____________________38\n |
14 -- 20 |
47 -- 53 |
-16.4048 kcal/mol |
3.58309 kcal/mol |
2.49358 kcal/mol |
7 29@LB@ | |@LB@ 5'-ACCGCCA CG U AUUUG...UUC-3'@LB@ UUG GUUUUAUU AG GGGAU@LB@ |:| ||||:|:| || |||||@LB@ AGC CAAAGUGA UC CCCUA@LB@3'-UUU...CGUUA AA G AAGGU...GCA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -16.4048 kcal/mol@LB@Unfolding Energy - mRNA 3.58309 kcal/mol@LB@Unfolding Energy - sRNA 2.49358 kcal/mol@LB@@LB@Position - mRNA 8 -- 28@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 157 |
0.007641 |
0.1668 |
b3154 |
yhbP |
-10.32 |
0.216043 |
188 -- 213 |
45 -- 78 |
UPF0306 family protein |
|
_____________187________________________________214\n_____________|__________________________________|\n5'-AAA...GUAUA_____GA____________GGAAA__________UCGCC...UUU-3'\n______________AAAGA______ACAGCAAU_________CACUCA\n______________|||||______||||||||_________||||||\n______________UUUCU______UGUCGUUA_________GUGAGU\n3'-UUU...ACCCG_____GAUGUG________AGCAACAAA______CCCCU...GCA-5'\n_____________|__________________________________|\n_____________79_________________________________44\n |
196 -- 202 |
60 -- 66 |
-17.2265 kcal/mol |
3.1682 kcal/mol |
3.741 kcal/mol |
187 214@LB@ | |@LB@5'-AAA...GUAUA GA GGAAA UCGCC...UUU-3'@LB@ AAAGA ACAGCAAU CACUCA@LB@ ||||| |||||||| ||||||@LB@ UUUCU UGUCGUUA GUGAGU@LB@3'-UUU...ACCCG GAUGUG AGCAACAAA CCCCU...GCA-5'@LB@ | |@LB@ 79 44@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -17.2265 kcal/mol@LB@Unfolding Energy - mRNA 3.1682 kcal/mol@LB@Unfolding Energy - sRNA 3.741 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 45 -- 78@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 188 |
0.009562 |
0.1776 |
b0147 |
ligT |
-10.24 |
0.223023 |
2 -- 33 |
35 -- 66 |
2'-5' RNA ligase |
|
_____________1_________________________________34\n_____________|_________________________________|\n__________5'-C________GCAGCGG___GC____UU_______CGGCC...CGG-3'\n______________CAGCAGUU________CA__CAGG__GAUUUCC\n______________|||||:||________||__||||__|||||||\n______________GUCGUUAA________GU__GUCC__CUAAAGG\n3'-UUU...UGUGU________GCAACAAA__GA____C________UACGA...GCA-5'\n_____________|_________________________________|\n_____________67________________________________34\n |
27 -- 33 |
35 -- 41 |
-25.6384 kcal/mol |
10.64 kcal/mol |
4.7609 kcal/mol |
1 34@LB@ | |@LB@ 5'-C GCAGCGG GC UU CGGCC...CGG-3'@LB@ CAGCAGUU CA CAGG GAUUUCC@LB@ |||||:|| || |||| |||||||@LB@ GUCGUUAA GU GUCC CUAAAGG@LB@3'-UUU...UGUGU GCAACAAA GA C UACGA...GCA-5'@LB@ | |@LB@ 67 34@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -25.6384 kcal/mol@LB@Unfolding Energy - mRNA 10.64 kcal/mol@LB@Unfolding Energy - sRNA 4.7609 kcal/mol@LB@@LB@Position - mRNA 2 -- 33@LB@Position - sRNA 35 -- 66@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 50 |
0.001668 |
0.1153 |
b2821 |
ptrA |
-10.19 |
0.227412 |
3 -- 12 |
46 -- 55 |
protease III |
|
_____________2__________13\n_____________|__________|\n_________5'-GC__________UAAUC...CCA-3'\n______________UGUUUCGCUU\n______________||||||:||:\n______________ACAAAGUGAG\n3'-UUU...AAGCA__________UCCCC...GCA-5'\n_____________|__________|\n_____________56_________45\n |
6 -- 12 |
46 -- 52 |
-11.8599 kcal/mol |
0.772948 kcal/mol |
0.89782 kcal/mol |
2 13@LB@ | |@LB@ 5'-GC UAAUC...CCA-3'@LB@ UGUUUCGCUU@LB@ ||||||:||:@LB@ ACAAAGUGAG@LB@3'-UUU...AAGCA UCCCC...GCA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -11.8599 kcal/mol@LB@Unfolding Energy - mRNA 0.772948 kcal/mol@LB@Unfolding Energy - sRNA 0.89782 kcal/mol@LB@@LB@Position - mRNA 3 -- 12@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 96 |
0.004462 |
0.1538 |
b3260 |
dusB |
-10.19 |
0.227205 |
72 -- 117 |
38 -- 74 |
tRNA-dihydrouridine synthase B |
|
_____________71_____________________________________________118\n_____________|______________________________________________|\n5'-ACU...AUCGC__C____U__UUUUAAAU_______U___AUC__U_____A_____GGUCA...GAG-3'\n______________AC_ACGC_CA________GCAAUUC_UUG___CA_CUCAG_GGAUU\n______________||_||:|_||________|||||||_|||___||_|||||_|||||\n______________UG_UGUG_GU________CGUUAAG_AAC___GU_GAGUC_CCUAA\n3'-UUU...GUUUC__A____U_________________C___AAA________C_____AGGUA...GCA-5'\n_____________|______________________________________________|\n_____________75_____________________________________________37\n |
90 -- 96 |
58 -- 64 |
-26.7161 kcal/mol |
11.7467 kcal/mol |
4.77867 kcal/mol |
71 118@LB@ | |@LB@5'-ACU...AUCGC C U UUUUAAAU U AUC U A GGUCA...GAG-3'@LB@ AC ACGC CA GCAAUUC UUG CA CUCAG GGAUU@LB@ || ||:| || ||||||| ||| || ||||| |||||@LB@ UG UGUG GU CGUUAAG AAC GU GAGUC CCUAA@LB@3'-UUU...GUUUC A U C AAA C AGGUA...GCA-5'@LB@ | |@LB@ 75 37@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -26.7161 kcal/mol@LB@Unfolding Energy - mRNA 11.7467 kcal/mol@LB@Unfolding Energy - sRNA 4.77867 kcal/mol@LB@@LB@Position - mRNA 72 -- 117@LB@Position - sRNA 38 -- 74@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 101 |
0.004534 |
0.1538 |
b2079 |
baeR |
-10.16 |
0.230535 |
155 -- 191 |
34 -- 71 |
response regulator in two-component regulatory system with BaeS |
|
_____________154_______________________________________192\n_____________|_________________________________________|\n5'-CAG...GGUAA___U________A_____AC______G_AAC______UA__GAGAG...CGA-3'\n______________GCA_UACAGUAG___GUU____CGCU_G___GGGAUU__CA\n______________:||_:||||:|:___|||____|:||_:___||||||__||\n______________UGU_GUGUCGUU___CAA____GUGA_U___CCCUAA__GU\n3'-UUU...UCUGA____________AAG___CAAA____G_C________AG__ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________72________________________________________33\n |
160 -- 166 |
61 -- 67 |
-23.4603 kcal/mol |
8.51419 kcal/mol |
4.79237 kcal/mol |
154 192@LB@ | |@LB@5'-CAG...GGUAA U A AC G AAC UA GAGAG...CGA-3'@LB@ GCA UACAGUAG GUU CGCU G GGGAUU CA@LB@ :|| :||||:|: ||| |:|| : |||||| ||@LB@ UGU GUGUCGUU CAA GUGA U CCCUAA GU@LB@3'-UUU...UCUGA AAG CAAA G C AG ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -23.4603 kcal/mol@LB@Unfolding Energy - mRNA 8.51419 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 155 -- 191@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 80 |
0.003376 |
0.1462 |
b3098 |
yqjD |
-10.12 |
0.233597 |
155 -- 204 |
31 -- 75 |
membrane-anchored ribosome-binding protein |
|
_____________154_________________________________________________205\n_____________|___________________________________________________|\n5'-UCA...CGCGC______UA__UCA____A___CACUAC_______CCU__A__AAA______CGAAA...AAG-3'\n______________GACUAC__AC___CAAU__GU______UUACUCA___GG_GA___CUAUGU\n______________||||||__||___||||__||______|:|||||___||_||___|:|||:\n______________CUGAUG__UG___GUUA__CA______AGUGAGU___CC_CU___GGUACG\n3'-UUU...CGUUU______UG__UC_____AG__ACAA_________C_______AAA______AAUAU...GCA-5'\n_____________|___________________________________________________|\n_____________76__________________________________________________30\n |
181 -- 187 |
45 -- 51 |
-24.4421 kcal/mol |
7.05998 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UCA...CGCGC UA UCA A CACUAC CCU A AAA CGAAA...AAG-3'@LB@ GACUAC AC CAAU GU UUACUCA GG GA CUAUGU@LB@ |||||| || |||| || |:||||| || || |:|||:@LB@ CUGAUG UG GUUA CA AGUGAGU CC CU GGUACG@LB@3'-UUU...CGUUU UG UC AG ACAA C AAA AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -24.4421 kcal/mol@LB@Unfolding Energy - mRNA 7.05998 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 185 |
0.009421 |
0.1776 |
b3094 |
exuR |
-10.10 |
0.235203 |
51 -- 95 |
35 -- 75 |
hexuronate regulon transcriptional repressor; autorepressor |
|
_____________50____________________________________________96\n_____________|_____________________________________________|\n5'-CCG...AUAAC___CC_____C____CAUUAAC_______GUA__UUUUA______CUUCA...CUG-3'\n______________GAU__CGCAC_GCAA_______GUUUCGU___AG_____GUUUCC\n______________||:__|:|||_||||_______|||||::___||_____:|||||\n______________CUG__GUGUG_CGUU_______CAAAGUG___UC_____UAAAGG\n3'-UUU...CGUUU___AU_____U____AAGCAA________AG___CCC________UACGA...GCA-5'\n_____________|_____________________________________________|\n_____________76____________________________________________34\n |
73 -- 79 |
48 -- 54 |
-21.0703 kcal/mol |
6.16224 kcal/mol |
4.80541 kcal/mol |
50 96@LB@ | |@LB@5'-CCG...AUAAC CC C CAUUAAC GUA UUUUA CUUCA...CUG-3'@LB@ GAU CGCAC GCAA GUUUCGU AG GUUUCC@LB@ ||: |:||| |||| |||||:: || :|||||@LB@ CUG GUGUG CGUU CAAAGUG UC UAAAGG@LB@3'-UUU...CGUUU AU U AAGCAA AG CCC UACGA...GCA-5'@LB@ | |@LB@ 76 34@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -21.0703 kcal/mol@LB@Unfolding Energy - mRNA 6.16224 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 51 -- 95@LB@Position - sRNA 35 -- 75@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 128 |
0.005802 |
0.1577 |
b2889 |
idi |
-10.08 |
0.237455 |
129 -- 166 |
33 -- 74 |
isopentenyl diphosphate isomerase |
|
_____________128________________________________________167\n_____________|__________________________________________|\n5'-CUC...UAAAC_______UU___UAA__A___________UUCAAUUA_____AAUGA...UCG-3'\n______________GCU_CAC__GGU___UC____UUUCACUC________UCUAU\n______________:||_|||__:|:___||____||||||||________||:||\n______________UGA_GUG__UCG___AG____AAAGUGAG________AGGUA\n3'-UUU...GUUUC___U___UG___UUA__CAAC________UCCCCUAA_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
147 -- 153 |
46 -- 52 |
-18.0124 kcal/mol |
3.11816 kcal/mol |
4.81602 kcal/mol |
128 167@LB@ | |@LB@5'-CUC...UAAAC UU UAA A UUCAAUUA AAUGA...UCG-3'@LB@ GCU CAC GGU UC UUUCACUC UCUAU@LB@ :|| ||| :|: || |||||||| ||:||@LB@ UGA GUG UCG AG AAAGUGAG AGGUA@LB@3'-UUU...GUUUC U UG UUA CAAC UCCCCUAA CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -18.0124 kcal/mol@LB@Unfolding Energy - mRNA 3.11816 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 129 -- 166@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 190 |
0.009703 |
0.1776 |
b4125 |
dcuS |
-9.98 |
0.246838 |
251 -- 265 |
60 -- 75 |
sensory histidine kinase in two-component regulatory system with DcuR regulator of anaerobic fumarate respiration |
|
_____________250______________266\n_____________|________________|\n5'-UCC...AAAUU__G_____________CUUAA...UAU-3'\n______________GA_UAC_CACAGUGAU\n______________||_|||_|||||::||\n______________CU_AUG_GUGUCGUUA\n3'-UUU...CGUUU__G___U_________AGCAA...GCA-5'\n_____________|________________|\n_____________76_______________59\n |
259 -- 265 |
60 -- 66 |
-16.3548 kcal/mol |
3.08747 kcal/mol |
3.28851 kcal/mol |
250 266@LB@ | |@LB@5'-UCC...AAAUU G CUUAA...UAU-3'@LB@ GA UAC CACAGUGAU@LB@ || ||| |||||::||@LB@ CU AUG GUGUCGUUA@LB@3'-UUU...CGUUU G U AGCAA...GCA-5'@LB@ | |@LB@ 76 59@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -16.3548 kcal/mol@LB@Unfolding Energy - mRNA 3.08747 kcal/mol@LB@Unfolding Energy - sRNA 3.28851 kcal/mol@LB@@LB@Position - mRNA 251 -- 265@LB@Position - sRNA 60 -- 75@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 60 -- 66@LB@ |
