1 |
5.015e-10 |
1.765e-06 |
b0680 |
glnS |
-23.71 |
0.000006 |
155 -- 198 |
34 -- 77 |
glutamyl-tRNA synthetase |
|
_____________154___________________________________________199\n_____________|_____________________________________________|\n5'-UGC...CUUAU_____C______C__U__A________A_____U_A___A_____CGAUG...CGC-3'\n______________AAGAU_AUACGC_GU_AU_CGUUGUUU_CGCUU_G_GGA__UCCA\n______________||||:_|:||:|_|:_||_||||||||_|:||:_|_|||__||||\n______________UUCUG_UGUGUG_CG_UA_GCAACAAA_GUGAG_C_CCU__AGGU\n3'-UUU...CCCGU_____A______U__U__A______________U_C___AA____ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________78____________________________________________33\n |
175 -- 181 |
51 -- 57 |
-34.8912 kcal/mol |
6.37021 kcal/mol |
4.81601 kcal/mol |
154 199@LB@ | |@LB@5'-UGC...CUUAU C C U A A U A A CGAUG...CGC-3'@LB@ AAGAU AUACGC GU AU CGUUGUUU CGCUU G GGA UCCA@LB@ ||||: |:||:| |: || |||||||| |:||: | ||| ||||@LB@ UUCUG UGUGUG CG UA GCAACAAA GUGAG C CCU AGGU@LB@3'-UUU...CCCGU A U U A U C AA ACGAA...GCA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -23.71 kcal/mol@LB@Hybridization Energy -34.8912 kcal/mol@LB@Unfolding Energy - mRNA 6.37021 kcal/mol@LB@Unfolding Energy - sRNA 4.81601 kcal/mol@LB@@LB@Position - mRNA 155 -- 198@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 51 -- 57@LB@ |
7 |
1.819e-05 |
0.009142 |
b1849 |
purT |
-22.68 |
0.000026 |
168 -- 199 |
33 -- 74 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________167________________________________________200\n_____________|__________________________________________|\n5'-UUU...UUUAU________________AA__________________A_____UAUGA...GUC-3'\n______________ACUGCGCGCGG_AAUU___________UCAGGGGAU_UUCGU\n______________|||:|:|:|:|_||||___________|||||||||_|:|:|\n______________UGAUGUGUGUC_UUAA___________AGUCCCCUA_AGGUA\n3'-UUU...GUUUC___________G____GCAACAAAGUG_________A_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
187 -- 193 |
39 -- 45 |
-34.2979 kcal/mol |
6.80622 kcal/mol |
4.81602 kcal/mol |
167 200@LB@ | |@LB@5'-UUU...UUUAU AA A UAUGA...GUC-3'@LB@ ACUGCGCGCGG AAUU UCAGGGGAU UUCGU@LB@ |||:|:|:|:| |||| ||||||||| |:|:|@LB@ UGAUGUGUGUC UUAA AGUCCCCUA AGGUA@LB@3'-UUU...GUUUC G GCAACAAAGUG A CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -22.68 kcal/mol@LB@Hybridization Energy -34.2979 kcal/mol@LB@Unfolding Energy - mRNA 6.80622 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 168 -- 199@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 39 -- 45@LB@ |
6 |
1.32e-05 |
0.00774 |
b0475 |
hemH |
-21.46 |
0.000115 |
123 -- 162 |
34 -- 75 |
ferrochelatase |
|
_____________122__________________________________________163\n_____________|____________________________________________|\n5'-CGG...GAUUU___CU_U__________A___CUUC________CU_________CUACA...GCG-3'\n______________GAC__C_CACAGCAAUU_GUU____UUC_CUCA_____UUUCCG\n______________|||__|_||||||||||_|||____|||_||||_____|||||:\n______________CUG__G_GUGUCGUUAA_CAA____AAG_GAGU_____AAAGGU\n3'-UUU...CGUUU___AU_U__________G___CA_____U____CCCCU______ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________33\n |
133 -- 139 |
59 -- 65 |
-29.8744 kcal/mol |
3.60304 kcal/mol |
4.816 kcal/mol |
122 163@LB@ | |@LB@5'-CGG...GAUUU CU U A CUUC CU CUACA...GCG-3'@LB@ GAC C CACAGCAAUU GUU UUC CUCA UUUCCG@LB@ ||| | |||||||||| ||| ||| |||| |||||:@LB@ CUG G GUGUCGUUAA CAA AAG GAGU AAAGGU@LB@3'-UUU...CGUUU AU U G CA U CCCCU ACGAA...GCA-5'@LB@ | |@LB@ 76 33@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -29.8744 kcal/mol@LB@Unfolding Energy - mRNA 3.60304 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 123 -- 162@LB@Position - sRNA 34 -- 75@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 59 -- 65@LB@ |
154 |
0.007512 |
0.1668 |
b2180 |
yejF |
-18.70 |
0.001576 |
262 -- 293 |
44 -- 72 |
microcin C ABC transporter ATPase |
|
_____________261______________________________294\n_____________|________________________________|\n5'-GAC...AACCG_____________CAA__A_________A___AUUGAGG-3'\n______________UACGUACAGUAGU___UG_UGUUUCACU_CAG\n______________|||::||||:|:|___:|_|||||||||_|||\n______________AUGUGUGUCGUUA___GC_ACAAAGUGA_GUC\n3'-UUU...UUCUG_____________A____A_____________CCCUA...GCA-5'\n_____________|________________________________|\n_____________73_______________________________43\n |
283 -- 289 |
47 -- 53 |
-27.8629 kcal/mol |
5.03502 kcal/mol |
4.12429 kcal/mol |
261 294@LB@ | |@LB@5'-GAC...AACCG CAA A A AUUGAGG-3'@LB@ UACGUACAGUAGU UG UGUUUCACU CAG@LB@ |||::||||:|:| :| ||||||||| |||@LB@ AUGUGUGUCGUUA GC ACAAAGUGA GUC@LB@3'-UUU...UUCUG A A CCCUA...GCA-5'@LB@ | |@LB@ 73 43@LB@@LB@@LB@Energy -18.70 kcal/mol@LB@Hybridization Energy -27.8629 kcal/mol@LB@Unfolding Energy - mRNA 5.03502 kcal/mol@LB@Unfolding Energy - sRNA 4.12429 kcal/mol@LB@@LB@Position - mRNA 262 -- 293@LB@Position - sRNA 44 -- 72@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 47 -- 53@LB@ |
19 |
0.0001526 |
0.02826 |
b1040 |
csgD |
-18.47 |
0.001904 |
103 -- 117 |
60 -- 74 |
csgBAC operon transcriptional regulator |
b3520 |
_____________102_____________118\n_____________|_______________|\n5'-UUA...UUAUU_______________GCAAC...CGC-3'\n______________ACUACACACAGCAGU\n______________|||||||||||||:|\n______________UGAUGUGUGUCGUUA\n3'-UUU...GUUUC_______________AGCAA...GCA-5'\n_____________|_______________|\n_____________75______________59\n |
111 -- 117 |
60 -- 66 |
-23.4761 kcal/mol |
1.72592 kcal/mol |
3.27997 kcal/mol |
102 118@LB@ | |@LB@5'-UUA...UUAUU GCAAC...CGC-3'@LB@ ACUACACACAGCAGU@LB@ |||||||||||||:|@LB@ UGAUGUGUGUCGUUA@LB@3'-UUU...GUUUC AGCAA...GCA-5'@LB@ | |@LB@ 75 59@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -23.4761 kcal/mol@LB@Unfolding Energy - mRNA 1.72592 kcal/mol@LB@Unfolding Energy - sRNA 3.27997 kcal/mol@LB@@LB@Position - mRNA 103 -- 117@LB@Position - sRNA 60 -- 74@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 60 -- 66@LB@ |
47 |
0.001402 |
0.105 |
b2297 |
pta |
-18.38 |
0.002042 |
9 -- 40 |
45 -- 75 |
phosphate acetyltransferase |
|
_____________8__________________________________41\n_____________|__________________________________|\n___5'-CGCAACCU_________UUU______A__UG___________ACAAA...GUC-3'\n______________GGCUGCACG___CGGCAA_UC___GUUUCA_UCA\n______________|:||:|||:___|:||||_||___||||||_|||\n______________CUGAUGUGU___GUCGUU_AG___CAAAGU_AGU\n3'-UUU...CGUUU__________________A__CAA______G___CCCCU...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________44\n |
11 -- 17 |
67 -- 73 |
-26.9548 kcal/mol |
4.83173 kcal/mol |
3.74078 kcal/mol |
8 41@LB@ | |@LB@ 5'-CGCAACCU UUU A UG ACAAA...GUC-3'@LB@ GGCUGCACG CGGCAA UC GUUUCA UCA@LB@ |:||:|||: |:|||| || |||||| |||@LB@ CUGAUGUGU GUCGUU AG CAAAGU AGU@LB@3'-UUU...CGUUU A CAA G CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -18.38 kcal/mol@LB@Hybridization Energy -26.9548 kcal/mol@LB@Unfolding Energy - mRNA 4.83173 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 9 -- 40@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 67 -- 73@LB@ |
24 |
0.0002076 |
0.02926 |
b3459 |
panM |
-18.00 |
0.002751 |
9 -- 48 |
38 -- 75 |
PanD autocleavage accelerator panothenate synthesis |
|
_____________8___________________________________________49\n_____________|___________________________________________|\n___5'-AAAAUAAC_______A_G___GGAAU_____ACUA________________AUGCU...UUG-3'\n______________GGC_ACA_A_GGC_____AAUUC______UCAUUCAGGGGAUU\n______________|:|_|||_|_:||_____|||||______|||:||||||||||\n______________CUG_UGU_U_UCG_____UUAAG______AGUGAGUCCCCUAA\n3'-UUU...CGUUU___A___G_G_____________CAACAA______________AGGUA...GCA-5'\n_____________|___________________________________________|\n_____________76__________________________________________37\n |
42 -- 48 |
38 -- 44 |
-31.5918 kcal/mol |
8.81239 kcal/mol |
4.77946 kcal/mol |
8 49@LB@ | |@LB@ 5'-AAAAUAAC A G GGAAU ACUA AUGCU...UUG-3'@LB@ GGC ACA A GGC AAUUC UCAUUCAGGGGAUU@LB@ |:| ||| | :|| ||||| |||:||||||||||@LB@ CUG UGU U UCG UUAAG AGUGAGUCCCCUAA@LB@3'-UUU...CGUUU A G G CAACAA AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -31.5918 kcal/mol@LB@Unfolding Energy - mRNA 8.81239 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 9 -- 48@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 38 -- 44@LB@ |
32 |
0.0005139 |
0.05552 |
b4070 |
nrfA |
-17.83 |
0.003136 |
66 -- 107 |
41 -- 78 |
nitrite reductase formate-dependent cytochrome |
|
_____________65_________________________________________108\n_____________|__________________________________________|\n5'-UGU...UGAUU______A___UU_______UG___AU_____A___A______CGAGC...CAA-3'\n______________AAAGAC_ACA__CACAGUG__GUU__UUGUU_CAC_UAGGGG\n______________||||||_|||__|||||::__:||__|||||_|||_:|||||\n______________UUUCUG_UGU__GUGUCGU__UAA__AACAA_GUG_GUCCCC\n3'-UUU...ACCCG______A_________________GC_____A___A______UAAAG...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
78 -- 84 |
62 -- 68 |
-32.7887 kcal/mol |
10.1881 kcal/mol |
4.77302 kcal/mol |
65 108@LB@ | |@LB@5'-UGU...UGAUU A UU UG AU A A CGAGC...CAA-3'@LB@ AAAGAC ACA CACAGUG GUU UUGUU CAC UAGGGG@LB@ |||||| ||| |||||:: :|| ||||| ||| :|||||@LB@ UUUCUG UGU GUGUCGU UAA AACAA GUG GUCCCC@LB@3'-UUU...ACCCG A GC A A UAAAG...GCA-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -17.83 kcal/mol@LB@Hybridization Energy -32.7887 kcal/mol@LB@Unfolding Energy - mRNA 10.1881 kcal/mol@LB@Unfolding Energy - sRNA 4.77302 kcal/mol@LB@@LB@Position - mRNA 66 -- 107@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 62 -- 68@LB@ |
159 |
0.007688 |
0.1668 |
b0454 |
ybaZ |
-17.74 |
0.003345 |
226 -- 245 |
34 -- 52 |
excision repair protein alkyltransferase-like protein ATL |
|
_____________225__________________246\n_____________|____________________|\n5'-AGG...GCGAC__________C_UU______GAUUA...UUC-3'\n______________UUCACUCGGG_G__UUUCCA\n______________|||||||:||_|__||||||\n______________AAGUGAGUCC_C__AAAGGU\n3'-UUU...CAACA____________CU______ACGAA...GCA-5'\n_____________|____________________|\n_____________53___________________33\n |
229 -- 235 |
43 -- 49 |
-23.7092 kcal/mol |
4.0826 kcal/mol |
1.88482 kcal/mol |
225 246@LB@ | |@LB@5'-AGG...GCGAC C UU GAUUA...UUC-3'@LB@ UUCACUCGGG G UUUCCA@LB@ |||||||:|| | ||||||@LB@ AAGUGAGUCC C AAAGGU@LB@3'-UUU...CAACA CU ACGAA...GCA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -17.74 kcal/mol@LB@Hybridization Energy -23.7092 kcal/mol@LB@Unfolding Energy - mRNA 4.0826 kcal/mol@LB@Unfolding Energy - sRNA 1.88482 kcal/mol@LB@@LB@Position - mRNA 226 -- 245@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 43 -- 49@LB@ |
127 |
0.005686 |
0.1575 |
b1176 |
minC |
-17.54 |
0.003902 |
3 -- 40 |
35 -- 74 |
inhibitor of FtsZ ring polymerization |
|
_____________2________________________________________41\n_____________|________________________________________|\n_________5'-AA_G_____________GG____A__G__A_____U______UAAGC...AAG-3'\n______________A_UACG_ACGGCAAU__GUUG_UU_AC__AGGG_AUUUUU\n______________|_|||:_||:|||||__||||_||_||__||||_||||::\n______________U_AUGU_UGUCGUUA__CAAC_AA_UG__UCCC_UAAAGG\n3'-UUU...GUUUC_G____G________AG____A__G__AG____C______UACGA...GCA-5'\n_____________|________________________________________|\n_____________75_______________________________________34\n |
10 -- 16 |
60 -- 66 |
-29.7113 kcal/mol |
7.37167 kcal/mol |
4.80541 kcal/mol |
2 41@LB@ | |@LB@ 5'-AA G GG A G A U UAAGC...AAG-3'@LB@ A UACG ACGGCAAU GUUG UU AC AGGG AUUUUU@LB@ | |||: ||:||||| |||| || || |||| ||||::@LB@ U AUGU UGUCGUUA CAAC AA UG UCCC UAAAGG@LB@3'-UUU...GUUUC G G AG A G AG C UACGA...GCA-5'@LB@ | |@LB@ 75 34@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -29.7113 kcal/mol@LB@Unfolding Energy - mRNA 7.37167 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 3 -- 40@LB@Position - sRNA 35 -- 74@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 60 -- 66@LB@ |
5 |
9.512e-06 |
0.006694 |
b4006 |
purH |
-17.40 |
0.004319 |
188 -- 204 |
31 -- 46 |
IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase |
|
_____________187_______________205\n_____________|_________________|\n5'-GUA...AAAUC__________A______AACAA...AGC-3'\n______________CAGGGGAUUU_CCAUGC\n______________||||||||||_||||||\n______________GUCCCCUAAA_GGUACG\n3'-UUU...AGUGA_________________AAUAU...GCA-5'\n_____________|_________________|\n_____________47________________30\n |
191 -- 197 |
37 -- 43 |
-27.6893 kcal/mol |
6.33421 kcal/mol |
3.95768 kcal/mol |
187 205@LB@ | |@LB@5'-GUA...AAAUC A AACAA...AGC-3'@LB@ CAGGGGAUUU CCAUGC@LB@ |||||||||| ||||||@LB@ GUCCCCUAAA GGUACG@LB@3'-UUU...AGUGA AAUAU...GCA-5'@LB@ | |@LB@ 47 30@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -27.6893 kcal/mol@LB@Unfolding Energy - mRNA 6.33421 kcal/mol@LB@Unfolding Energy - sRNA 3.95768 kcal/mol@LB@@LB@Position - mRNA 188 -- 204@LB@Position - sRNA 31 -- 46@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
9 |
4.743e-05 |
0.01855 |
b1204 |
pth |
-17.38 |
0.004387 |
162 -- 190 |
43 -- 74 |
peptidyl-tRNA hydrolase |
|
_____________161_______________________________191\n_____________|_________________________________|\n5'-UGG...AGUAA________________A_____ACA________ACAAA...AGC-3'\n______________ACUACGCGC__CAGUU___UGU___CACUCAGG\n______________|||||:|:|__||:||___|||___||||||||\n______________UGAUGUGUG__GUUAA___ACA___GUGAGUCC\n3'-UUU...GUUUC_________UC_____GCA___AA_________CCUAA...GCA-5'\n_____________|_________________________________|\n_____________75________________________________42\n |
184 -- 190 |
43 -- 49 |
-27.969 kcal/mol |
6.24318 kcal/mol |
4.35222 kcal/mol |
161 191@LB@ | |@LB@5'-UGG...AGUAA A ACA ACAAA...AGC-3'@LB@ ACUACGCGC CAGUU UGU CACUCAGG@LB@ |||||:|:| ||:|| ||| ||||||||@LB@ UGAUGUGUG GUUAA ACA GUGAGUCC@LB@3'-UUU...GUUUC UC GCA AA CCUAA...GCA-5'@LB@ | |@LB@ 75 42@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -27.969 kcal/mol@LB@Unfolding Energy - mRNA 6.24318 kcal/mol@LB@Unfolding Energy - sRNA 4.35222 kcal/mol@LB@@LB@Position - mRNA 162 -- 190@LB@Position - sRNA 43 -- 74@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 43 -- 49@LB@ |
28 |
0.0004009 |
0.04965 |
b3511 |
hdeD |
-17.16 |
0.005105 |
126 -- 176 |
35 -- 75 |
acid-resistance membrane protein |
|
_____________125__________________________________________________177\n_____________|____________________________________________________|\n5'-GAG...AAAUC________U_UUA__CG________G__AUAGAUUGAUAG____________UUCUU...UCG-3'\n______________GACUGCAU_C___GA__CGUU_UUU_GC____________CAGGGGAUUUUC\n______________||||:||:_|___:|__||||_|||_:|____________||||||||||:|\n______________CUGAUGUG_G___UU__GCAA_AAA_UG____________GUCCCCUAAAGG\n3'-UUU...CGUUU________U_UCG__AA____C___G__A_______________________UACGA...GCA-5'\n_____________|____________________________________________________|\n_____________76___________________________________________________34\n |
170 -- 176 |
35 -- 41 |
-34.0299 kcal/mol |
12.0619 kcal/mol |
4.80541 kcal/mol |
125 177@LB@ | |@LB@5'-GAG...AAAUC U UUA CG G AUAGAUUGAUAG UUCUU...UCG-3'@LB@ GACUGCAU C GA CGUU UUU GC CAGGGGAUUUUC@LB@ ||||:||: | :| |||| ||| :| ||||||||||:|@LB@ CUGAUGUG G UU GCAA AAA UG GUCCCCUAAAGG@LB@3'-UUU...CGUUU U UCG AA C G A UACGA...GCA-5'@LB@ | |@LB@ 76 34@LB@@LB@@LB@Energy -17.16 kcal/mol@LB@Hybridization Energy -34.0299 kcal/mol@LB@Unfolding Energy - mRNA 12.0619 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 126 -- 176@LB@Position - sRNA 35 -- 75@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 35 -- 41@LB@ |
10 |
6.564e-05 |
0.0231 |
b3458 |
livK |
-17.14 |
0.005196 |
153 -- 196 |
35 -- 71 |
leucine transporter subunit |
|
_____________152____________________________________________197\n_____________|______________________________________________|\n5'-UGU...UGUUA______AAAAACAA_____CACAACA______GAAU__________GACUA...CGA-3'\n______________ACACAU________AGCAA_________UCAC____GGGGAUUUUU\n______________|||||:________|||||_________||||____||||||||::\n______________UGUGUG________UCGUU_________AGUG____CCCCUAAAGG\n3'-UUU...UCUGA___________________AAGCAACAA____AGU___________UACGA...GCA-5'\n_____________|______________________________________________|\n_____________72_____________________________________________34\n |
190 -- 196 |
35 -- 41 |
-26.3585 kcal/mol |
4.43917 kcal/mol |
4.78171 kcal/mol |
152 197@LB@ | |@LB@5'-UGU...UGUUA AAAAACAA CACAACA GAAU GACUA...CGA-3'@LB@ ACACAU AGCAA UCAC GGGGAUUUUU@LB@ |||||: ||||| |||| ||||||||::@LB@ UGUGUG UCGUU AGUG CCCCUAAAGG@LB@3'-UUU...UCUGA AAGCAACAA AGU UACGA...GCA-5'@LB@ | |@LB@ 72 34@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -26.3585 kcal/mol@LB@Unfolding Energy - mRNA 4.43917 kcal/mol@LB@Unfolding Energy - sRNA 4.78171 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 35 -- 71@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 35 -- 41@LB@ |
37 |
0.0006599 |
0.0618 |
b3399 |
yrfG |
-16.99 |
0.005777 |
176 -- 197 |
35 -- 56 |
GMP/IMP nucleotidase |
|
_____________175____________________198\n_____________|______________________|\n5'-UAG...GCAAA___C_______U__A_______CUCAU...AGC-3'\n______________UUG_UUCACUC_GG_GAUUUCC\n______________|||_|||||||_||_|||||||\n______________AAC_AAGUGAG_CC_CUAAAGG\n3'-UUU...UAAGC___A_______U__C_______UACGA...GCA-5'\n_____________|______________________|\n_____________57_____________________34\n |
191 -- 197 |
35 -- 41 |
-24.095 kcal/mol |
5.08619 kcal/mol |
2.02101 kcal/mol |
175 198@LB@ | |@LB@5'-UAG...GCAAA C U A CUCAU...AGC-3'@LB@ UUG UUCACUC GG GAUUUCC@LB@ ||| ||||||| || |||||||@LB@ AAC AAGUGAG CC CUAAAGG@LB@3'-UUU...UAAGC A U C UACGA...GCA-5'@LB@ | |@LB@ 57 34@LB@@LB@@LB@Energy -16.99 kcal/mol@LB@Hybridization Energy -24.095 kcal/mol@LB@Unfolding Energy - mRNA 5.08619 kcal/mol@LB@Unfolding Energy - sRNA 2.02101 kcal/mol@LB@@LB@Position - mRNA 176 -- 197@LB@Position - sRNA 35 -- 56@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 35 -- 41@LB@ |
2 |
1.464e-07 |
0.0002576 |
b2741 |
rpoS |
-16.90 |
0.006155 |
67 -- 107 |
33 -- 71 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________66______________________________________________108\n_____________|_______________________________________________|\n5'-CGG...GUUCA______UU___UUUUGAA______________A_______AA_____AAACC...AGG-3'\n______________ACACGC__GCA_______AUUCGUU_____AC__AGGGGA__UCCGU\n______________||||:|__|||_______|||||||_____||__||||||__|||:|\n______________UGUGUG__CGU_______UAAGCAA_____UG__UCCCCU__AGGUA\n3'-UUU...UCUGA______U__________________CAAAG__AG______AA_____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________72______________________________________________32\n |
85 -- 91 |
55 -- 61 |
-29.972 kcal/mol |
8.28292 kcal/mol |
4.7924 kcal/mol |
66 108@LB@ | |@LB@5'-CGG...GUUCA UU UUUUGAA A AA AAACC...AGG-3'@LB@ ACACGC GCA AUUCGUU AC AGGGGA UCCGU@LB@ ||||:| ||| ||||||| || |||||| |||:|@LB@ UGUGUG CGU UAAGCAA UG UCCCCU AGGUA@LB@3'-UUU...UCUGA U CAAAG AG AA CGAAU...GCA-5'@LB@ | |@LB@ 72 32@LB@@LB@@LB@Energy -16.90 kcal/mol@LB@Hybridization Energy -29.972 kcal/mol@LB@Unfolding Energy - mRNA 8.28292 kcal/mol@LB@Unfolding Energy - sRNA 4.7924 kcal/mol@LB@@LB@Position - mRNA 67 -- 107@LB@Position - sRNA 33 -- 71@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 55 -- 61@LB@ |
45 |
0.001296 |
0.1014 |
b2465 |
tktB |
-16.90 |
0.006168 |
210 -- 248 |
39 -- 78 |
transketolase 2 thiamine triphosphate-binding |
|
_____________209__________________________________________249\n_____________|____________________________________________|\n5'-AGU...CCCGA______CU______AU________CG___________UAU____GCGGU...CUG-3'\n______________AAAGAC__UGC_CA__GCGAUUCG______CACUCAG___GGAU\n______________||||||__|:|_||__||:|||||______|||||||___||||\n______________UUUCUG__AUG_GU__CGUUAAGC______GUGAGUC___CCUA\n3'-UUU...ACCCG___________U__GU________AACAAA_______C______AAGGU...GCA-5'\n_____________|____________________________________________|\n_____________79___________________________________________38\n |
235 -- 241 |
44 -- 50 |
-32.1578 kcal/mol |
10.4844 kcal/mol |
4.77966 kcal/mol |
209 249@LB@ | |@LB@5'-AGU...CCCGA CU AU CG UAU GCGGU...CUG-3'@LB@ AAAGAC UGC CA GCGAUUCG CACUCAG GGAU@LB@ |||||| |:| || ||:||||| ||||||| ||||@LB@ UUUCUG AUG GU CGUUAAGC GUGAGUC CCUA@LB@3'-UUU...ACCCG U GU AACAAA C AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -16.90 kcal/mol@LB@Hybridization Energy -32.1578 kcal/mol@LB@Unfolding Energy - mRNA 10.4844 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 210 -- 248@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 44 -- 50@LB@ |
57 |
0.002011 |
0.1223 |
b3057 |
bacA |
-16.67 |
0.007222 |
149 -- 193 |
41 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________148___________________________________________194\n_____________|_____________________________________________|\n5'-UUC...UGGUC_______________GACAAG_GGUACAUUUUAAUA_________UUUAU...UUG-3'\n______________AUACGCAGUAGUUCG______C______________AUUUAGGGG\n______________|:||:|||:|:||||______|______________|:|:|||||\n______________UGUGUGUCGUUAAGC______G______________UGAGUCCCC\n3'-UUU...UCUGA_______________AACAAA________________________UAAAG...GCA-5'\n_____________|_____________________________________________|\n_____________72____________________________________________40\n |
187 -- 193 |
41 -- 47 |
-30.087 kcal/mol |
8.67993 kcal/mol |
4.74226 kcal/mol |
148 194@LB@ | |@LB@5'-UUC...UGGUC GACAAG GGUACAUUUUAAUA UUUAU...UUG-3'@LB@ AUACGCAGUAGUUCG C AUUUAGGGG@LB@ |:||:|||:|:|||| | |:|:|||||@LB@ UGUGUGUCGUUAAGC G UGAGUCCCC@LB@3'-UUU...UCUGA AACAAA UAAAG...GCA-5'@LB@ | |@LB@ 72 40@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -30.087 kcal/mol@LB@Unfolding Energy - mRNA 8.67993 kcal/mol@LB@Unfolding Energy - sRNA 4.74226 kcal/mol@LB@@LB@Position - mRNA 149 -- 193@LB@Position - sRNA 41 -- 71@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 41 -- 47@LB@ |
15 |
0.0001044 |
0.0245 |
b0741 |
pal |
-16.61 |
0.007509 |
30 -- 75 |
30 -- 71 |
peptidoglycan-associated outer membrane lipoprotein |
|
_____________29_____________________________________________76\n_____________|______________________________________________|\n5'-GGA...UAACG____U________CUACAGCUCUU__________GGGA________GAAUU...GCG-3'\n______________GCAC_AUGGUAAU___________CUCAGGGGAU____UCCGUGCU\n______________:|||_|::|:|||___________||||||||||____|||:||||\n______________UGUG_UGUCGUUA___________GAGUCCCCUA____AGGUACGA\n3'-UUU...UCUGA_____________AGCAACAAAGU__________A___________AUAUU...GCA-5'\n_____________|______________________________________________|\n_____________72_____________________________________________29\n |
69 -- 75 |
30 -- 36 |
-38.4662 kcal/mol |
13.7923 kcal/mol |
8.066 kcal/mol |
29 76@LB@ | |@LB@5'-GGA...UAACG U CUACAGCUCUU GGGA GAAUU...GCG-3'@LB@ GCAC AUGGUAAU CUCAGGGGAU UCCGUGCU@LB@ :||| |::|:||| |||||||||| |||:||||@LB@ UGUG UGUCGUUA GAGUCCCCUA AGGUACGA@LB@3'-UUU...UCUGA AGCAACAAAGU A AUAUU...GCA-5'@LB@ | |@LB@ 72 29@LB@@LB@@LB@Energy -16.61 kcal/mol@LB@Hybridization Energy -38.4662 kcal/mol@LB@Unfolding Energy - mRNA 13.7923 kcal/mol@LB@Unfolding Energy - sRNA 8.066 kcal/mol@LB@@LB@Position - mRNA 30 -- 75@LB@Position - sRNA 30 -- 71@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 30 -- 36@LB@ |
115 |
0.005088 |
0.155 |
b4131 |
cadA |
-16.57 |
0.007707 |
197 -- 237 |
37 -- 75 |
lysine decarboxylase acid-inducible |
|
_____________196__________________________________________238\n_____________|____________________________________________|\n5'-CUC...GAUAU______GA___UUAUU_____A_____AA____AU_________AUUUU...UUG-3'\n______________GACUAU__ACG_____GCAAU___UUG__UCAC___GGGGGUUU\n______________|||||:__||:_____|||||___|||__||||___||||:|||\n______________CUGAUG__UGU_____CGUUA___AAC__AGUG___CCCCUAAA\n3'-UUU...CGUUU______UG_____________AGC___AA____AGU________GGUAC...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________36\n |
231 -- 237 |
37 -- 43 |
-27.1465 kcal/mol |
5.79755 kcal/mol |
4.77966 kcal/mol |
196 238@LB@ | |@LB@5'-CUC...GAUAU GA UUAUU A AA AU AUUUU...UUG-3'@LB@ GACUAU ACG GCAAU UUG UCAC GGGGGUUU@LB@ |||||: ||: ||||| ||| |||| ||||:|||@LB@ CUGAUG UGU CGUUA AAC AGUG CCCCUAAA@LB@3'-UUU...CGUUU UG AGC AA AGU GGUAC...GCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.57 kcal/mol@LB@Hybridization Energy -27.1465 kcal/mol@LB@Unfolding Energy - mRNA 5.79755 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 197 -- 237@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 37 -- 43@LB@ |
56 |
0.001982 |
0.1223 |
b2304 |
yfcH |
-16.49 |
0.008143 |
193 -- 225 |
40 -- 77 |
putative NAD-dependent nucleotide-sugar epimerase |
|
_____________192_________________________________________226\n_____________|___________________________________________|\n5'-AAA...AUCGG________AUGA__________________________A____CAGGA...ACC-3'\n______________GAGGCUGC____ACAUAGUGA_________UCAC_CGG_GGGA\n______________:||:||:|____|||:||::|_________||||_|:|_||||\n______________UUCUGAUG____UGUGUCGUU_________AGUG_GUC_CCCU\n3'-UUU...CCCGU_____________________AAGCAACAA____A________AAAGG...GCA-5'\n_____________|___________________________________________|\n_____________78__________________________________________39\n |
206 -- 212 |
62 -- 68 |
-29.217 kcal/mol |
7.9505 kcal/mol |
4.77871 kcal/mol |
192 226@LB@ | |@LB@5'-AAA...AUCGG AUGA A CAGGA...ACC-3'@LB@ GAGGCUGC ACAUAGUGA UCAC CGG GGGA@LB@ :||:||:| |||:||::| |||| |:| ||||@LB@ UUCUGAUG UGUGUCGUU AGUG GUC CCCU@LB@3'-UUU...CCCGU AAGCAACAA A AAAGG...GCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -29.217 kcal/mol@LB@Unfolding Energy - mRNA 7.9505 kcal/mol@LB@Unfolding Energy - sRNA 4.77871 kcal/mol@LB@@LB@Position - mRNA 193 -- 225@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 62 -- 68@LB@ |
69 |
0.002809 |
0.1417 |
b1925 |
fliS |
-16.42 |
0.008504 |
133 -- 153 |
57 -- 74 |
flagellar protein potentiates polymerization |
|
_____________132___________________154\n_____________|_____________________|\n5'-UUA...CAGCA_____UUA_____________AAAAC...AUG-3'\n______________GCUAC___ACGCAGCAGUUCG\n______________:||||___||:|||||:||||\n______________UGAUG___UGUGUCGUUAAGC\n3'-UUU...GUUUC_____________________AACAA...GCA-5'\n_____________|_____________________|\n_____________75____________________56\n |
147 -- 153 |
57 -- 63 |
-25.0139 kcal/mol |
5.019 kcal/mol |
3.57148 kcal/mol |
132 154@LB@ | |@LB@5'-UUA...CAGCA UUA AAAAC...AUG-3'@LB@ GCUAC ACGCAGCAGUUCG@LB@ :|||| ||:|||||:||||@LB@ UGAUG UGUGUCGUUAAGC@LB@3'-UUU...GUUUC AACAA...GCA-5'@LB@ | |@LB@ 75 56@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.0139 kcal/mol@LB@Unfolding Energy - mRNA 5.019 kcal/mol@LB@Unfolding Energy - sRNA 3.57148 kcal/mol@LB@@LB@Position - mRNA 133 -- 153@LB@Position - sRNA 57 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 57 -- 63@LB@ |
156 |
0.007591 |
0.1668 |
b1044 |
ymdA |
-16.39 |
0.008687 |
226 -- 252 |
46 -- 73 |
uncharacterized protein |
|
_____________225__________________________253\n_____________|____________________________|\n5'-UGA...CUCUC______U____________U________UUAUU...UUU-3'\n______________UUAUGC_CGGCAGUUUGUU_UUUC_CUU\n______________:||::|_|:|||:||:|||_||||_||:\n______________GAUGUG_GUCGUUAAGCAA_AAAG_GAG\n3'-UUU...UUUCU______U____________C____U___UCCCC...GCA-5'\n_____________|____________________________|\n_____________74___________________________45\n |
236 -- 242 |
57 -- 63 |
-24.6333 kcal/mol |
4.51706 kcal/mol |
3.72492 kcal/mol |
225 253@LB@ | |@LB@5'-UGA...CUCUC U U UUAUU...UUU-3'@LB@ UUAUGC CGGCAGUUUGUU UUUC CUU@LB@ :||::| |:|||:||:||| |||| ||:@LB@ GAUGUG GUCGUUAAGCAA AAAG GAG@LB@3'-UUU...UUUCU U C U UCCCC...GCA-5'@LB@ | |@LB@ 74 45@LB@@LB@@LB@Energy -16.39 kcal/mol@LB@Hybridization Energy -24.6333 kcal/mol@LB@Unfolding Energy - mRNA 4.51706 kcal/mol@LB@Unfolding Energy - sRNA 3.72492 kcal/mol@LB@@LB@Position - mRNA 226 -- 252@LB@Position - sRNA 46 -- 73@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 57 -- 63@LB@ |
30 |
0.0004324 |
0.05073 |
b3364 |
tsgA |
-16.38 |
0.008733 |
203 -- 236 |
38 -- 75 |
putative transporter |
|
_____________202_____________________________________237\n_____________|_______________________________________|\n5'-CCA...AUCAU___________________CAUCAA______CAU_____AGCUU...AUA-3'\n______________GACUA___ACAGCAAU_CG_______GCUCA___GGAUU\n______________|||||___||||||||_||_______:||||___|||||\n______________CUGAU___UGUCGUUA_GC_______UGAGU___CCUAA\n3'-UUU...CGUUU_____GUG________A__AACAAAG_____CC______AGGUA...GCA-5'\n_____________|_______________________________________|\n_____________76______________________________________37\n |
209 -- 215 |
60 -- 66 |
-26.4683 kcal/mol |
5.30565 kcal/mol |
4.77946 kcal/mol |
202 237@LB@ | |@LB@5'-CCA...AUCAU CAUCAA CAU AGCUU...AUA-3'@LB@ GACUA ACAGCAAU CG GCUCA GGAUU@LB@ ||||| |||||||| || :|||| |||||@LB@ CUGAU UGUCGUUA GC UGAGU CCUAA@LB@3'-UUU...CGUUU GUG A AACAAAG CC AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -26.4683 kcal/mol@LB@Unfolding Energy - mRNA 5.30565 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 203 -- 236@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 60 -- 66@LB@ |
81 |
0.003429 |
0.1462 |
b0413 |
nrdR |
-16.32 |
0.009130 |
136 -- 177 |
33 -- 64 |
Nrd regulon repressor |
|
_____________135_________________________________________178\n_____________|___________________________________________|\n5'-AGG...GUUGC__C_________A___UCAG_______UAAAAUA_________UAACC...UGU-3'\n______________GC__UUUGUUGU_UCG____UUCAGGG_______GAUUUCCGU\n______________||__||:|||||_||:____:||||||_______|||||||:|\n______________CG__AAGCAACA_AGU____GAGUCCC_______CUAAAGGUA\n3'-UUU...UGUGU__UU________A______________________________CGAAU...GCA-5'\n_____________|___________________________________________|\n_____________65__________________________________________32\n |
171 -- 177 |
33 -- 39 |
-28.4719 kcal/mol |
7.3911 kcal/mol |
4.76435 kcal/mol |
135 178@LB@ | |@LB@5'-AGG...GUUGC C A UCAG UAAAAUA UAACC...UGU-3'@LB@ GC UUUGUUGU UCG UUCAGGG GAUUUCCGU@LB@ || ||:||||| ||: :|||||| |||||||:|@LB@ CG AAGCAACA AGU GAGUCCC CUAAAGGUA@LB@3'-UUU...UGUGU UU A CGAAU...GCA-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -28.4719 kcal/mol@LB@Unfolding Energy - mRNA 7.3911 kcal/mol@LB@Unfolding Energy - sRNA 4.76435 kcal/mol@LB@@LB@Position - mRNA 136 -- 177@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 33 -- 39@LB@ |
102 |
0.004593 |
0.1538 |
b0343 |
lacY |
-16.22 |
0.009713 |
12 -- 55 |
39 -- 78 |
lactose permease |
|
_____________11___________________________________________56\n_____________|____________________________________________|\n5'-UGC...ACGCG_____AG_________UG___A___ACG_____CA_AU______UGGUG...GGC-3'\n______________GAAGA__GCACAUGGC__AAU_UCG___GUUUC__U__GGGGAU\n______________:||||__:||||::||__|||_|||___|||||__|__||||||\n______________UUUCU__UGUGUGUCG__UUA_AGC___CAAAG__A__CCCCUA\n3'-UUU...ACCCG_____GA__________________AA______UG_GU______AAGGU...GCA-5'\n_____________|____________________________________________|\n_____________79___________________________________________38\n |
21 -- 27 |
63 -- 69 |
-31.4377 kcal/mol |
10.4352 kcal/mol |
4.77966 kcal/mol |
11 56@LB@ | |@LB@5'-UGC...ACGCG AG UG A ACG CA AU UGGUG...GGC-3'@LB@ GAAGA GCACAUGGC AAU UCG GUUUC U GGGGAU@LB@ :|||| :||||::|| ||| ||| ||||| | ||||||@LB@ UUUCU UGUGUGUCG UUA AGC CAAAG A CCCCUA@LB@3'-UUU...ACCCG GA AA UG GU AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -31.4377 kcal/mol@LB@Unfolding Energy - mRNA 10.4352 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 12 -- 55@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 63 -- 69@LB@ |
39 |
0.0006857 |
0.06187 |
b1305 |
pspB |
-16.08 |
0.010660 |
268 -- 296 |
48 -- 75 |
psp operon transcription co-activator |
|
_____________267____________________________297\n_____________|______________________________|\n5'-AUU...GUUAU_______U______________CUGG____AGUG-3'\n______________GGCUGCA_UACAGCAAU_CGUU____UCGC\n______________|:||:||_:||||||||_||||____||:|\n______________CUGAUGU_GUGUCGUUA_GCAA____AGUG\n3'-UUU...CGUUU_________________A____CAA_____AGUCC...GCA-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
278 -- 284 |
60 -- 66 |
-29.5086 kcal/mol |
9.74074 kcal/mol |
3.68696 kcal/mol |
267 297@LB@ | |@LB@5'-AUU...GUUAU U CUGG AGUG-3'@LB@ GGCUGCA UACAGCAAU CGUU UCGC@LB@ |:||:|| :|||||||| |||| ||:|@LB@ CUGAUGU GUGUCGUUA GCAA AGUG@LB@3'-UUU...CGUUU A CAA AGUCC...GCA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -16.08 kcal/mol@LB@Hybridization Energy -29.5086 kcal/mol@LB@Unfolding Energy - mRNA 9.74074 kcal/mol@LB@Unfolding Energy - sRNA 3.68696 kcal/mol@LB@@LB@Position - mRNA 268 -- 296@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 60 -- 66@LB@ |
83 |
0.003448 |
0.1462 |
b4231 |
yjfF |
-16.06 |
0.010834 |
60 -- 72 |
39 -- 51 |
putative sugar ABC transporter permease |
|
_____________59____________73\n_____________|_____________|\n5'-CGG...GCUGA_____________GAACA...GAG-3'\n______________UUAUUCAGGGGAU\n______________|:|:|||||||||\n______________AGUGAGUCCCCUA\n3'-UUU...AACAA_____________AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
66 -- 72 |
39 -- 45 |
-20.8743 kcal/mol |
3.02031 kcal/mol |
1.79807 kcal/mol |
59 73@LB@ | |@LB@5'-CGG...GCUGA GAACA...GAG-3'@LB@ UUAUUCAGGGGAU@LB@ |:|:|||||||||@LB@ AGUGAGUCCCCUA@LB@3'-UUU...AACAA AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -20.8743 kcal/mol@LB@Unfolding Energy - mRNA 3.02031 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 60 -- 72@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 39 -- 45@LB@ |
29 |
0.0004091 |
0.04965 |
b0958 |
sulA |
-15.92 |
0.011809 |
212 -- 243 |
48 -- 76 |
SOS cell division inhibitor |
|
_____________211______________________________244\n_____________|________________________________|\n5'-AUA...ACUUC____________UC__UC_____C___C____CCGCA...UCA-3'\n______________AGGCUAUGCACA__GU__UUCGU_GUU_UCAU\n______________||:|||::||||__|:__|||||_|||_|||:\n______________UCUGAUGUGUGU__CG__AAGCA_CAA_AGUG\n3'-UUU...CCGUU________________UU_____A________AGUCC...GCA-5'\n_____________|________________________________|\n_____________77_______________________________47\n |
217 -- 223 |
65 -- 71 |
-24.9625 kcal/mol |
5.35271 kcal/mol |
3.68714 kcal/mol |
211 244@LB@ | |@LB@5'-AUA...ACUUC UC UC C C CCGCA...UCA-3'@LB@ AGGCUAUGCACA GU UUCGU GUU UCAU@LB@ ||:|||::|||| |: ||||| ||| |||:@LB@ UCUGAUGUGUGU CG AAGCA CAA AGUG@LB@3'-UUU...CCGUU UU A AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -24.9625 kcal/mol@LB@Unfolding Energy - mRNA 5.35271 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 212 -- 243@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 65 -- 71@LB@ |
16 |
0.00012 |
0.02638 |
b3089 |
sstT |
-15.87 |
0.012233 |
203 -- 224 |
42 -- 75 |
sodium:serine/threonine symporter |
|
_____________202________________________________225\n_____________|__________________________________|\n5'-CAC...AAAAU_________ACG______________________CUAUU...CAU-3'\n______________GACUACGCA______________UUCAC_CGGGG\n______________||||||:||______________|||||_|:|||\n______________CUGAUGUGU______________AAGUG_GUCCC\n3'-UUU...CGUUU_________GUCGUUAAGCAACA_____A_____CUAAA...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________41\n |
205 -- 211 |
67 -- 73 |
-24.6329 kcal/mol |
4.00159 kcal/mol |
4.76397 kcal/mol |
202 225@LB@ | |@LB@5'-CAC...AAAAU ACG CUAUU...CAU-3'@LB@ GACUACGCA UUCAC CGGGG@LB@ ||||||:|| ||||| |:|||@LB@ CUGAUGUGU AAGUG GUCCC@LB@3'-UUU...CGUUU GUCGUUAAGCAACA A CUAAA...GCA-5'@LB@ | |@LB@ 76 41@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -24.6329 kcal/mol@LB@Unfolding Energy - mRNA 4.00159 kcal/mol@LB@Unfolding Energy - sRNA 4.76397 kcal/mol@LB@@LB@Position - mRNA 203 -- 224@LB@Position - sRNA 42 -- 75@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 67 -- 73@LB@ |
3 |
3.356e-06 |
0.003937 |
b3724 |
phoU |
-15.84 |
0.012477 |
157 -- 192 |
43 -- 78 |
negative regulator of PhoR/PhoB two-component regulator |
|
_____________156____________________________________193\n_____________|______________________________________|\n5'-ACC...AAACA______________C_________ACGG__G_______AGUGC...AGC-3'\n______________GAAGACUACAU_CA_CGG_UCGUU____UU_AUUCAGG\n______________:|||||||||:_||_|::_|||||____||_|:|||||\n______________UUUCUGAUGUG_GU_GUU_AGCAA____AA_UGAGUCC\n3'-UUU...ACCCG___________U__C___A_____CA____G_______CCUAA...GCA-5'\n_____________|______________________________________|\n_____________79_____________________________________42\n |
186 -- 192 |
43 -- 49 |
-29.823 kcal/mol |
9.63349 kcal/mol |
4.35315 kcal/mol |
156 193@LB@ | |@LB@5'-ACC...AAACA C ACGG G AGUGC...AGC-3'@LB@ GAAGACUACAU CA CGG UCGUU UU AUUCAGG@LB@ :|||||||||: || |:: ||||| || |:|||||@LB@ UUUCUGAUGUG GU GUU AGCAA AA UGAGUCC@LB@3'-UUU...ACCCG U C A CA G CCUAA...GCA-5'@LB@ | |@LB@ 79 42@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -29.823 kcal/mol@LB@Unfolding Energy - mRNA 9.63349 kcal/mol@LB@Unfolding Energy - sRNA 4.35315 kcal/mol@LB@@LB@Position - mRNA 157 -- 192@LB@Position - sRNA 43 -- 78@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 43 -- 49@LB@ |
106 |
0.004704 |
0.1538 |
b0995 |
torR |
-15.76 |
0.013096 |
243 -- 292 |
33 -- 70 |
response regulator in two-component regulatory system with TorS |
|
_____________242_________________________________________________293\n_____________|___________________________________________________|\n5'-CCA...UUACC__G_________ACAAUCCUAC__________A__GGUAUACC________UACGGCGA-3'\n______________CA_GC_GCGAUU__________UUCACUCAGG_GG________GUUUCCGU\n______________||_:|_||:|||__________||||||||||_||________:|||||:|\n______________GU_UG_CGUUAA__________AAGUGAGUCC_CC________UAAAGGUA\n3'-UUU...CUGAU__G__U______GCAACA_________________________________CGAAU...GCA-5'\n_____________|___________________________________________________|\n_____________71__________________________________________________32\n |
286 -- 292 |
33 -- 39 |
-31.2367 kcal/mol |
10.6838 kcal/mol |
4.7924 kcal/mol |
242 293@LB@ | |@LB@5'-CCA...UUACC G ACAAUCCUAC A GGUAUACC UACGGCGA-3'@LB@ CA GC GCGAUU UUCACUCAGG GG GUUUCCGU@LB@ || :| ||:||| |||||||||| || :|||||:|@LB@ GU UG CGUUAA AAGUGAGUCC CC UAAAGGUA@LB@3'-UUU...CUGAU G U GCAACA CGAAU...GCA-5'@LB@ | |@LB@ 71 32@LB@@LB@@LB@Energy -15.76 kcal/mol@LB@Hybridization Energy -31.2367 kcal/mol@LB@Unfolding Energy - mRNA 10.6838 kcal/mol@LB@Unfolding Energy - sRNA 4.7924 kcal/mol@LB@@LB@Position - mRNA 243 -- 292@LB@Position - sRNA 33 -- 70@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 33 -- 39@LB@ |
200 |
0.01028 |
0.1776 |
b2803 |
fucK |
-15.72 |
0.013449 |
16 -- 30 |
62 -- 76 |
L-fuculokinase |
|
_____________15______________31\n_____________|_______________|\n5'-AUC...UGCCU_______________UGGAU...CGC-3'\n______________GGGCUGCGCACGGCA\n______________:|:||:|:|||:|||\n______________UCUGAUGUGUGUCGU\n3'-UUU...CCGUU_______________UAAGC...GCA-5'\n_____________|_______________|\n_____________77______________61\n |
24 -- 30 |
62 -- 68 |
-24.6836 kcal/mol |
5.71098 kcal/mol |
3.25371 kcal/mol |
15 31@LB@ | |@LB@5'-AUC...UGCCU UGGAU...CGC-3'@LB@ GGGCUGCGCACGGCA@LB@ :|:||:|:|||:|||@LB@ UCUGAUGUGUGUCGU@LB@3'-UUU...CCGUU UAAGC...GCA-5'@LB@ | |@LB@ 77 61@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -24.6836 kcal/mol@LB@Unfolding Energy - mRNA 5.71098 kcal/mol@LB@Unfolding Energy - sRNA 3.25371 kcal/mol@LB@@LB@Position - mRNA 16 -- 30@LB@Position - sRNA 62 -- 76@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 62 -- 68@LB@ |
131 |
0.005914 |
0.1577 |
b2360 |
yfdQ |
-15.68 |
0.013816 |
114 -- 143 |
46 -- 74 |
CPS-53 (KpLE1) prophage; uncharacterized protein |
|
_____________113____________________________144\n_____________|______________________________|\n5'-UCC...GGAAA___C__________G__AUUAAUA______UUAAU...CUG-3'\n______________ACU_CGCGCAGCAG_UC_______UCAUUC\n______________|||_|:|:|||||:_||_______|||:||\n______________UGA_GUGUGUCGUU_AG_______AGUGAG\n3'-UUU...GUUUC___U__________A__CAACAA_______UCCCC...GCA-5'\n_____________|______________________________|\n_____________75_____________________________45\n |
121 -- 127 |
61 -- 67 |
-23.4619 kcal/mol |
4.06011 kcal/mol |
3.72594 kcal/mol |
113 144@LB@ | |@LB@5'-UCC...GGAAA C G AUUAAUA UUAAU...CUG-3'@LB@ ACU CGCGCAGCAG UC UCAUUC@LB@ ||| |:|:|||||: || |||:||@LB@ UGA GUGUGUCGUU AG AGUGAG@LB@3'-UUU...GUUUC U A CAACAA UCCCC...GCA-5'@LB@ | |@LB@ 75 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -23.4619 kcal/mol@LB@Unfolding Energy - mRNA 4.06011 kcal/mol@LB@Unfolding Energy - sRNA 3.72594 kcal/mol@LB@@LB@Position - mRNA 114 -- 143@LB@Position - sRNA 46 -- 74@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 61 -- 67@LB@ |
20 |
0.0001757 |
0.02926 |
b4175 |
hflC |
-15.67 |
0.013919 |
175 -- 193 |
40 -- 75 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________174__________________________________194\n_____________|____________________________________|\n5'-UUA...GUAAC____________________________________AAUAA...GUU-3'\n______________GACUAC___CAGCG______________UCAGGGGG\n______________||||||___||||:______________|||||||:\n______________CUGAUG___GUCGU______________AGUCCCCU\n3'-UUU...CGUUU______UGU_____UAAGCAACAAAGUG________AAAGG...GCA-5'\n_____________|____________________________________|\n_____________76___________________________________39\n |
187 -- 193 |
40 -- 46 |
-24.7611 kcal/mol |
4.31935 kcal/mol |
4.77786 kcal/mol |
174 194@LB@ | |@LB@5'-UUA...GUAAC AAUAA...GUU-3'@LB@ GACUAC CAGCG UCAGGGGG@LB@ |||||| ||||: |||||||:@LB@ CUGAUG GUCGU AGUCCCCU@LB@3'-UUU...CGUUU UGU UAAGCAACAAAGUG AAAGG...GCA-5'@LB@ | |@LB@ 76 39@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -24.7611 kcal/mol@LB@Unfolding Energy - mRNA 4.31935 kcal/mol@LB@Unfolding Energy - sRNA 4.77786 kcal/mol@LB@@LB@Position - mRNA 175 -- 193@LB@Position - sRNA 40 -- 75@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 40 -- 46@LB@ |
33 |
0.0005309 |
0.05552 |
b2905 |
gcvT |
-15.66 |
0.013961 |
227 -- 265 |
34 -- 74 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________226___________________________________________266\n_____________|_____________________________________________|\n5'-CUG...UACGA__A_______________CG__________CAU__U_________CGGCU...AAA-3'\n______________AC_ACACAC_GC__UUUG__G___CGCUCG___GG_GGAUUUCCA\n______________||_||||||_||__||:|__|___|:|||:___||_|||||||||\n______________UG_UGUGUG_CG__AAGC__C___GUGAGU___CC_CCUAAAGGU\n3'-UUU...GUUUC__A______U__UU____AA_AAA_____________________ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________75____________________________________________33\n |
259 -- 265 |
34 -- 40 |
-32.8395 kcal/mol |
12.3643 kcal/mol |
4.81599 kcal/mol |
226 266@LB@ | |@LB@5'-CUG...UACGA A CG CAU U CGGCU...AAA-3'@LB@ AC ACACAC GC UUUG G CGCUCG GG GGAUUUCCA@LB@ || |||||| || ||:| | |:|||: || |||||||||@LB@ UG UGUGUG CG AAGC C GUGAGU CC CCUAAAGGU@LB@3'-UUU...GUUUC A U UU AA AAA ACGAA...GCA-5'@LB@ | |@LB@ 75 33@LB@@LB@@LB@Energy -15.66 kcal/mol@LB@Hybridization Energy -32.8395 kcal/mol@LB@Unfolding Energy - mRNA 12.3643 kcal/mol@LB@Unfolding Energy - sRNA 4.81599 kcal/mol@LB@@LB@Position - mRNA 227 -- 265@LB@Position - sRNA 34 -- 74@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 34 -- 40@LB@ |
195 |
0.009901 |
0.1776 |
b1098 |
tmk |
-15.44 |
0.015998 |
201 -- 230 |
41 -- 71 |
thymidylate kinase |
|
_____________200_____________________________231\n_____________|_______________________________|\n5'-UAA...AAAAA___________GUAUAUCG______G_____CUGGA...GCG-3'\n______________AUGCGCAGUAA_________UCAUU_AGGGG\n______________|::|:|||:||_________|||:|_|||||\n______________UGUGUGUCGUU_________AGUGA_UCCCC\n3'-UUU...UCUGA___________AAGCAACAA_____G_____UAAAG...GCA-5'\n_____________|_______________________________|\n_____________72______________________________40\n |
205 -- 211 |
61 -- 67 |
-28.5877 kcal/mol |
8.40445 kcal/mol |
4.74226 kcal/mol |
200 231@LB@ | |@LB@5'-UAA...AAAAA GUAUAUCG G CUGGA...GCG-3'@LB@ AUGCGCAGUAA UCAUU AGGGG@LB@ |::|:|||:|| |||:| |||||@LB@ UGUGUGUCGUU AGUGA UCCCC@LB@3'-UUU...UCUGA AAGCAACAA G UAAAG...GCA-5'@LB@ | |@LB@ 72 40@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.5877 kcal/mol@LB@Unfolding Energy - mRNA 8.40445 kcal/mol@LB@Unfolding Energy - sRNA 4.74226 kcal/mol@LB@@LB@Position - mRNA 201 -- 230@LB@Position - sRNA 41 -- 71@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 61 -- 67@LB@ |
68 |
0.002787 |
0.1417 |
b3001 |
gpr |
-15.31 |
0.017381 |
36 -- 59 |
44 -- 69 |
L-glyceraldehyde 3-phosphate reductase |
|
_____________35__________________________60\n_____________|___________________________|\n5'-UCC...GUUAA________________CAC________UUGGU...GGC-3'\n______________ACGCGGCA__UCGUUG___UC_CUCAG\n______________||:|:|||__||||||___||_|||||\n______________UGUGUCGU__AGCAAC___AG_GAGUC\n3'-UUU...UGAUG________UA______AA___U_____CCCUA...GCA-5'\n_____________|___________________________|\n_____________70__________________________43\n |
37 -- 43 |
62 -- 68 |
-25.5933 kcal/mol |
6.1914 kcal/mol |
4.09554 kcal/mol |
35 60@LB@ | |@LB@5'-UCC...GUUAA CAC UUGGU...GGC-3'@LB@ ACGCGGCA UCGUUG UC CUCAG@LB@ ||:|:||| |||||| || |||||@LB@ UGUGUCGU AGCAAC AG GAGUC@LB@3'-UUU...UGAUG UA AA U CCCUA...GCA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -25.5933 kcal/mol@LB@Unfolding Energy - mRNA 6.1914 kcal/mol@LB@Unfolding Energy - sRNA 4.09554 kcal/mol@LB@@LB@Position - mRNA 36 -- 59@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 62 -- 68@LB@ |
171 |
0.008374 |
0.1723 |
b4485 |
ytfR |
-15.31 |
0.017344 |
177 -- 203 |
32 -- 71 |
putative sugar ABC transporter ATPase |
|
_____________176_______________________________________204\n_____________|_________________________________________|\n5'-CCU...UGGGA_____________________A___________AA______ACGAC...GCC-3'\n______________GCACGC____________UUU_CAC_CGGGGGA___CCAUG\n______________:|||:|____________|||_|||_|:|||||___|||||\n______________UGUGUG____________AAA_GUG_GUCCCCU___GGUAC\n3'-UUU...UCUGA______UCGUUAAGCAAC_______A_______AAA_____GAAUA...GCA-5'\n_____________|_________________________________________|\n_____________72________________________________________31\n |
190 -- 196 |
40 -- 46 |
-27.8319 kcal/mol |
5.2959 kcal/mol |
7.22604 kcal/mol |
176 204@LB@ | |@LB@5'-CCU...UGGGA A AA ACGAC...GCC-3'@LB@ GCACGC UUU CAC CGGGGGA CCAUG@LB@ :|||:| ||| ||| |:||||| |||||@LB@ UGUGUG AAA GUG GUCCCCU GGUAC@LB@3'-UUU...UCUGA UCGUUAAGCAAC A AAA GAAUA...GCA-5'@LB@ | |@LB@ 72 31@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -27.8319 kcal/mol@LB@Unfolding Energy - mRNA 5.2959 kcal/mol@LB@Unfolding Energy - sRNA 7.22604 kcal/mol@LB@@LB@Position - mRNA 177 -- 203@LB@Position - sRNA 32 -- 71@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 40 -- 46@LB@ |
126 |
0.00562 |
0.157 |
b3017 |
ftsP |
-15.30 |
0.017476 |
190 -- 242 |
38 -- 84 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________189____________________________________________________243\n_____________|______________________________________________________|\n5'-GAC...UUUAC____A_____U__GU___U____CGG____CAG________GGCAUC_______GCACU...CGC-3'\n______________AUGG_GCAAA_AU__CAC_CAGU____CGU___UUCAUUCA______GGGGAUU\n______________||||_|||||_|:__|||_|||:____|||___||||:|||______|||||||\n______________UACC_CGUUU_UG__GUG_GUCG____GCA___AAGUGAGU______CCCCUAA\n3'-UUU...CCCUC__________C__AU___U____UUAA___ACA_____________________AGGUA...GCA-5'\n_____________|______________________________________________________|\n_____________85_____________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-40.4092 kcal/mol |
11.1124 kcal/mol |
13.9994 kcal/mol |
189 243@LB@ | |@LB@5'-GAC...UUUAC A U GU U CGG CAG GGCAUC GCACU...CGC-3'@LB@ AUGG GCAAA AU CAC CAGU CGU UUCAUUCA GGGGAUU@LB@ |||| ||||| |: ||| |||: ||| ||||:||| |||||||@LB@ UACC CGUUU UG GUG GUCG GCA AAGUGAGU CCCCUAA@LB@3'-UUU...CCCUC C AU U UUAA ACA AGGUA...GCA-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.30 kcal/mol@LB@Hybridization Energy -40.4092 kcal/mol@LB@Unfolding Energy - mRNA 11.1124 kcal/mol@LB@Unfolding Energy - sRNA 13.9994 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
189 |
0.009605 |
0.1776 |
b0927 |
ycbL |
-15.21 |
0.018444 |
14 -- 51 |
33 -- 78 |
putative metal-binding enzyme |
|
_____________13__________________________________________________52\n_____________|___________________________________________________|\n5'-GGA...GAAGA________U_____UAAAG__________________CGAU__________AUUGA...GCG-3'\n______________AAAG_CUA_CACAC________________GC_CAGG____GGAUUUCCAU\n______________||||_|||_|||||________________:|_||||____||||||||||\n______________UUUC_GAU_GUGUG________________UG_GUCC____CCUAAAGGUA\n3'-UUU...ACCCG____U_________UCGUUAAGCAACAAAG__A__________________CGAAU...GCA-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________32\n |
45 -- 51 |
33 -- 39 |
-26.8189 kcal/mol |
6.79395 kcal/mol |
4.81602 kcal/mol |
13 52@LB@ | |@LB@5'-GGA...GAAGA U UAAAG CGAU AUUGA...GCG-3'@LB@ AAAG CUA CACAC GC CAGG GGAUUUCCAU@LB@ |||| ||| ||||| :| |||| ||||||||||@LB@ UUUC GAU GUGUG UG GUCC CCUAAAGGUA@LB@3'-UUU...ACCCG U UCGUUAAGCAACAAAG A CGAAU...GCA-5'@LB@ | |@LB@ 79 32@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -26.8189 kcal/mol@LB@Unfolding Energy - mRNA 6.79395 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 14 -- 51@LB@Position - sRNA 33 -- 78@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 33 -- 39@LB@ |
112 |
0.004986 |
0.1545 |
b0118 |
acnB |
-15.18 |
0.018766 |
221 -- 251 |
38 -- 71 |
aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase |
|
_____________220________________________________252\n_____________|__________________________________|\n5'-GAG...CGUAA_________UGAG___GC_______G________GCGCC...UGC-3'\n______________GCACGUAGC____CGU_____CGCU_AGGGGAUU\n______________:|||::|||____|||_____|:||_||||||||\n______________UGUGUGUCG____GCA_____GUGA_UCCCCUAA\n3'-UUU...UCUGA_________UUAA___ACAAA____G________AGGUA...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________37\n |
245 -- 251 |
38 -- 44 |
-33.2374 kcal/mol |
13.3072 kcal/mol |
4.74986 kcal/mol |
220 252@LB@ | |@LB@5'-GAG...CGUAA UGAG GC G GCGCC...UGC-3'@LB@ GCACGUAGC CGU CGCU AGGGGAUU@LB@ :|||::||| ||| |:|| ||||||||@LB@ UGUGUGUCG GCA GUGA UCCCCUAA@LB@3'-UUU...UCUGA UUAA ACAAA G AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -33.2374 kcal/mol@LB@Unfolding Energy - mRNA 13.3072 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 38 -- 44@LB@ |
169 |
0.008352 |
0.1723 |
b1222 |
narX |
-15.18 |
0.018797 |
58 -- 74 |
61 -- 75 |
sensory histidine kinase in two-component regulatory system with NarL |
|
_____________57________________75\n_____________|_________________|\n5'-AAA...AAAGC_____AC__________AUAAG...CUG-3'\n______________GACUA__CACACGGCAA\n______________|||||__|||||:||||\n______________CUGAU__GUGUGUCGUU\n3'-UUU...CGUUU_________________AAGCA...GCA-5'\n_____________|_________________|\n_____________76________________60\n |
68 -- 74 |
61 -- 67 |
-20.5903 kcal/mol |
2.1582 kcal/mol |
3.25399 kcal/mol |
57 75@LB@ | |@LB@5'-AAA...AAAGC AC AUAAG...CUG-3'@LB@ GACUA CACACGGCAA@LB@ ||||| |||||:||||@LB@ CUGAU GUGUGUCGUU@LB@3'-UUU...CGUUU AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -20.5903 kcal/mol@LB@Unfolding Energy - mRNA 2.1582 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 58 -- 74@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 61 -- 67@LB@ |
92 |
0.004122 |
0.1538 |
b3912 |
cpxR |
-15.13 |
0.019325 |
106 -- 130 |
39 -- 76 |
response regulator in two-component regulatory system with CpxA |
|
_____________105_____________________________________131\n_____________|_______________________________________|\n5'-UGA...GAUUC________A___U__________________________GUAAA...AUG-3'\n______________AGGCUGCA_ACA_GCG______________UCAGGGGGU\n______________||:||:||_|||_||:______________|||||||:|\n______________UCUGAUGU_UGU_CGU______________AGUCCCCUA\n3'-UUU...CCGUU________G_______UAAGCAACAAAGUG_________AAGGU...GCA-5'\n_____________|_______________________________________|\n_____________77______________________________________38\n |
124 -- 130 |
39 -- 45 |
-28.779 kcal/mol |
8.86764 kcal/mol |
4.77949 kcal/mol |
105 131@LB@ | |@LB@5'-UGA...GAUUC A U GUAAA...AUG-3'@LB@ AGGCUGCA ACA GCG UCAGGGGGU@LB@ ||:||:|| ||| ||: |||||||:|@LB@ UCUGAUGU UGU CGU AGUCCCCUA@LB@3'-UUU...CCGUU G UAAGCAACAAAGUG AAGGU...GCA-5'@LB@ | |@LB@ 77 38@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -28.779 kcal/mol@LB@Unfolding Energy - mRNA 8.86764 kcal/mol@LB@Unfolding Energy - sRNA 4.77949 kcal/mol@LB@@LB@Position - mRNA 106 -- 130@LB@Position - sRNA 39 -- 76@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 39 -- 45@LB@ |
44 |
0.001243 |
0.09943 |
b3064 |
tsaD |
-15.06 |
0.020167 |
98 -- 131 |
41 -- 82 |
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
|
_____________97___________________________________________132\n_____________|____________________________________________|\n5'-CAU...UAUAA_________G_______GA________________U________CGAAC...UGA-3'\n______________GGGUGAGGA_UAUACAC__GGC_________UUUC_C_CAGGGG\n______________|||::|:||_||:||||__:||_________||||_|_||||||\n______________CCCGUUUCU_AUGUGUG__UCG_________AAAG_G_GUCCCC\n3'-UUU...CUCUA_________G____________UUAAGCAAC____U_A______UAAAG...GCA-5'\n_____________|____________________________________________|\n_____________83___________________________________________40\n |
108 -- 114 |
66 -- 72 |
-38.4936 kcal/mol |
9.4641 kcal/mol |
13.9685 kcal/mol |
97 132@LB@ | |@LB@5'-CAU...UAUAA G GA U CGAAC...UGA-3'@LB@ GGGUGAGGA UAUACAC GGC UUUC C CAGGGG@LB@ |||::|:|| ||:|||| :|| |||| | ||||||@LB@ CCCGUUUCU AUGUGUG UCG AAAG G GUCCCC@LB@3'-UUU...CUCUA G UUAAGCAAC U A UAAAG...GCA-5'@LB@ | |@LB@ 83 40@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -38.4936 kcal/mol@LB@Unfolding Energy - mRNA 9.4641 kcal/mol@LB@Unfolding Energy - sRNA 13.9685 kcal/mol@LB@@LB@Position - mRNA 98 -- 131@LB@Position - sRNA 41 -- 82@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 66 -- 72@LB@ |
147 |
0.006785 |
0.1624 |
b1920 |
fliY |
-15.06 |
0.020217 |
159 -- 198 |
40 -- 75 |
cystine transporter subunit |
|
_____________158______________________________________199\n_____________|________________________________________|\n5'-CCA...ACAAU____C_____U____ACAGACAUAACAA_________U__AUAUG...UGC-3'\n______________GGCU_UACAC_GCAA_____________CAUUCGGGG_GA\n______________|:||_:||||_||||_____________||:||:|||_||\n______________CUGA_GUGUG_CGUU_____________GUGAGUCCC_CU\n3'-UUU...CGUUU____U_____U____AAGCAACAAA_______________AAAGG...GCA-5'\n_____________|________________________________________|\n_____________76_______________________________________39\n |
189 -- 195 |
42 -- 48 |
-27.6268 kcal/mol |
7.79206 kcal/mol |
4.77786 kcal/mol |
158 199@LB@ | |@LB@5'-CCA...ACAAU C U ACAGACAUAACAA U AUAUG...UGC-3'@LB@ GGCU UACAC GCAA CAUUCGGGG GA@LB@ |:|| :|||| |||| ||:||:||| ||@LB@ CUGA GUGUG CGUU GUGAGUCCC CU@LB@3'-UUU...CGUUU U U AAGCAACAAA AAAGG...GCA-5'@LB@ | |@LB@ 76 39@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -27.6268 kcal/mol@LB@Unfolding Energy - mRNA 7.79206 kcal/mol@LB@Unfolding Energy - sRNA 4.77786 kcal/mol@LB@@LB@Position - mRNA 159 -- 198@LB@Position - sRNA 40 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 42 -- 48@LB@ |
97 |
0.004509 |
0.1538 |
b0465 |
mscK |
-15.00 |
0.020897 |
217 -- 248 |
49 -- 74 |
mechanosensitive channel protein intermediate conductance K+ regulated |
|
_____________216______________________________249\n_____________|________________________________|\n5'-CGA...CCAGU______AACGAU_______U______U_____GCAUU...CGC-3'\n______________AUUACA______CACGGCA_UUUGUU_UUUCA\n______________|:||||______|||:|||_||:|||_|||||\n______________UGAUGU______GUGUCGU_AAGCAA_AAAGU\n3'-UUU...GUUUC___________________U______C_____GAGUC...GCA-5'\n_____________|________________________________|\n_____________75_______________________________48\n |
229 -- 235 |
62 -- 68 |
-21.8954 kcal/mol |
3.22234 kcal/mol |
3.67122 kcal/mol |
216 249@LB@ | |@LB@5'-CGA...CCAGU AACGAU U U GCAUU...CGC-3'@LB@ AUUACA CACGGCA UUUGUU UUUCA@LB@ |:|||| |||:||| ||:||| |||||@LB@ UGAUGU GUGUCGU AAGCAA AAAGU@LB@3'-UUU...GUUUC U C GAGUC...GCA-5'@LB@ | |@LB@ 75 48@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -21.8954 kcal/mol@LB@Unfolding Energy - mRNA 3.22234 kcal/mol@LB@Unfolding Energy - sRNA 3.67122 kcal/mol@LB@@LB@Position - mRNA 217 -- 248@LB@Position - sRNA 49 -- 74@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 62 -- 68@LB@ |
129 |
0.005822 |
0.1577 |
b0713 |
ybgL |
-14.99 |
0.021088 |
226 -- 247 |
61 -- 83 |
UPF0271 family protein |
|
_____________225_____________________248\n_____________|_______________________|\n5'-GCC...CGAUC_______________________CGCAG...AUG-3'\n______________UGGGCGAAGGCUGCGC_CAGCGA\n______________|||||:|||:||:|:|_||||:|\n______________ACCCGUUUCUGAUGUG_GUCGUU\n3'-UUU...CCUCU________________U______AAGCA...GCA-5'\n_____________|_______________________|\n_____________84______________________60\n |
234 -- 240 |
69 -- 75 |
-36.9571 kcal/mol |
11.7384 kcal/mol |
10.2322 kcal/mol |
225 248@LB@ | |@LB@5'-GCC...CGAUC CGCAG...AUG-3'@LB@ UGGGCGAAGGCUGCGC CAGCGA@LB@ |||||:|||:||:|:| ||||:|@LB@ ACCCGUUUCUGAUGUG GUCGUU@LB@3'-UUU...CCUCU U AAGCA...GCA-5'@LB@ | |@LB@ 84 60@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -36.9571 kcal/mol@LB@Unfolding Energy - mRNA 11.7384 kcal/mol@LB@Unfolding Energy - sRNA 10.2322 kcal/mol@LB@@LB@Position - mRNA 226 -- 247@LB@Position - sRNA 61 -- 83@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 69 -- 75@LB@ |
54 |
0.00187 |
0.1218 |
b3607 |
cysE |
-14.87 |
0.022582 |
98 -- 129 |
42 -- 78 |
serine acetyltransferase |
|
_____________97_________________________________________130\n_____________|__________________________________________|\n5'-CGG...CACGC______GA__________C_____________AACCC_____AACCU...CGA-3'\n______________AAGGAC___GCGCAGCAG__________CACU_____CAGGG\n______________||:|||___:|:|||||:__________||||_____|||||\n______________UUUCUG___UGUGUCGUU__________GUGA_____GUCCC\n3'-UUU...ACCCG______AUG_________AAGCAACAAA______________CUAAA...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________41\n |
108 -- 114 |
61 -- 67 |
-27.0645 kcal/mol |
7.42824 kcal/mol |
4.76487 kcal/mol |
97 130@LB@ | |@LB@5'-CGG...CACGC GA C AACCC AACCU...CGA-3'@LB@ AAGGAC GCGCAGCAG CACU CAGGG@LB@ ||:||| :|:|||||: |||| |||||@LB@ UUUCUG UGUGUCGUU GUGA GUCCC@LB@3'-UUU...ACCCG AUG AAGCAACAAA CUAAA...GCA-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -27.0645 kcal/mol@LB@Unfolding Energy - mRNA 7.42824 kcal/mol@LB@Unfolding Energy - sRNA 4.76487 kcal/mol@LB@@LB@Position - mRNA 98 -- 129@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 61 -- 67@LB@ |
22 |
0.0001899 |
0.02926 |
b2562 |
yfhL |
-14.77 |
0.023959 |
28 -- 42 |
42 -- 56 |
putative 4Fe-4S cluster-containing protein |
|
_____________27______________43\n_____________|_______________|\n5'-AGC...UCUGC____CA_________AAUGU...UUA-3'\n______________UUGU__CGCUCAGGG\n______________||||__|:|||||||\n______________AACA__GUGAGUCCC\n3'-UUU...UAAGC____AA_________CUAAA...GCA-5'\n_____________|_______________|\n_____________57______________41\n |
36 -- 42 |
42 -- 48 |
-19.6539 kcal/mol |
2.98712 kcal/mol |
1.89561 kcal/mol |
27 43@LB@ | |@LB@5'-AGC...UCUGC CA AAUGU...UUA-3'@LB@ UUGU CGCUCAGGG@LB@ |||| |:|||||||@LB@ AACA GUGAGUCCC@LB@3'-UUU...UAAGC AA CUAAA...GCA-5'@LB@ | |@LB@ 57 41@LB@@LB@@LB@Energy -14.77 kcal/mol@LB@Hybridization Energy -19.6539 kcal/mol@LB@Unfolding Energy - mRNA 2.98712 kcal/mol@LB@Unfolding Energy - sRNA 1.89561 kcal/mol@LB@@LB@Position - mRNA 28 -- 42@LB@Position - sRNA 42 -- 56@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 42 -- 48@LB@ |
14 |
0.0001025 |
0.0245 |
b4051 |
qorA |
-14.73 |
0.024599 |
192 -- 224 |
48 -- 76 |
quinone oxidoreductase NADPH-dependent |
|
_____________191_______________________________225\n_____________|_________________________________|\n5'-CGC...GUUCU___GG___________CA__AA___AA______AAGCA...UCG-3'\n______________GGA__ACACAUGGCAA__CG__UUG__UUUCAC\n______________:||__|||||::||||__||__|||__||||||\n______________UCU__UGUGUGUCGUU__GC__AAC__AAAGUG\n3'-UUU...CCGUU___GA___________AA_______________AGUCC...GCA-5'\n_____________|_________________________________|\n_____________77________________________________47\n |
201 -- 207 |
61 -- 67 |
-23.6874 kcal/mol |
5.27405 kcal/mol |
3.68714 kcal/mol |
191 225@LB@ | |@LB@5'-CGC...GUUCU GG CA AA AA AAGCA...UCG-3'@LB@ GGA ACACAUGGCAA CG UUG UUUCAC@LB@ :|| |||||::|||| || ||| ||||||@LB@ UCU UGUGUGUCGUU GC AAC AAAGUG@LB@3'-UUU...CCGUU GA AA AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.6874 kcal/mol@LB@Unfolding Energy - mRNA 5.27405 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 192 -- 224@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 61 -- 67@LB@ |
18 |
0.0001516 |
0.02826 |
b2817 |
amiC |
-14.62 |
0.026197 |
167 -- 204 |
31 -- 70 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________166______________________________________205\n_____________|________________________________________|\n5'-AGU...CUUGU________UUAGAUUUC___________A__GG_______CAGGA...UCA-3'\n______________UACACAGC_________UUUUGCUCGGG_GA____CAUGU\n______________:|||||||_________|||::|||:||_||____||||:\n______________GUGUGUCG_________AAAGUGAGUCC_CU____GUACG\n3'-UUU...CUGAU________UUAAGCAAC___________C__AAAG_____AAUAU...GCA-5'\n_____________|________________________________________|\n_____________71_______________________________________30\n |
188 -- 194 |
43 -- 49 |
-32.0387 kcal/mol |
10.1821 kcal/mol |
7.23824 kcal/mol |
166 205@LB@ | |@LB@5'-AGU...CUUGU UUAGAUUUC A GG CAGGA...UCA-3'@LB@ UACACAGC UUUUGCUCGGG GA CAUGU@LB@ :||||||| |||::|||:|| || ||||:@LB@ GUGUGUCG AAAGUGAGUCC CU GUACG@LB@3'-UUU...CUGAU UUAAGCAAC C AAAG AAUAU...GCA-5'@LB@ | |@LB@ 71 30@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -32.0387 kcal/mol@LB@Unfolding Energy - mRNA 10.1821 kcal/mol@LB@Unfolding Energy - sRNA 7.23824 kcal/mol@LB@@LB@Position - mRNA 167 -- 204@LB@Position - sRNA 31 -- 70@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 43 -- 49@LB@ |
49 |
0.00161 |
0.1153 |
b0655 |
gltI |
-14.54 |
0.027470 |
112 -- 169 |
31 -- 74 |
glutamate/aspartate periplasmic binding protein |
|
_____________111________________________________________________________170\n_____________|__________________________________________________________|\n5'-AUU...ACAAC_______AAUAAAGUU____A____AACAACACAAA______CAAC____A_______GUUCU...UGG-3'\n______________ACUGCAC_________GCAG_CGAU___________CACUCA____GGGU_UCCAUGC\n______________|||:|||_________:|||_|:||___________||||||____||:|_|||||||\n______________UGAUGUG_________UGUC_GUUA___________GUGAGU____CCUA_AGGUACG\n3'-UUU...GUUUC_________________________AGCAACAAA________CC______A_______AAUAU...GCA-5'\n_____________|__________________________________________________________|\n_____________75_________________________________________________________30\n |
163 -- 169 |
31 -- 37 |
-33.5884 kcal/mol |
11.7902 kcal/mol |
7.26183 kcal/mol |
111 170@LB@ | |@LB@5'-AUU...ACAAC AAUAAAGUU A AACAACACAAA CAAC A GUUCU...UGG-3'@LB@ ACUGCAC GCAG CGAU CACUCA GGGU UCCAUGC@LB@ |||:||| :||| |:|| |||||| ||:| |||||||@LB@ UGAUGUG UGUC GUUA GUGAGU CCUA AGGUACG@LB@3'-UUU...GUUUC AGCAACAAA CC A AAUAU...GCA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -33.5884 kcal/mol@LB@Unfolding Energy - mRNA 11.7902 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 112 -- 169@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 31 -- 37@LB@ |
192 |
0.00979 |
0.1776 |
b3879 |
yihR |
-14.50 |
0.028125 |
239 -- 282 |
38 -- 72 |
putative sulphoquinovose mutarotase |
|
_____________238__________________________________________283\n_____________|____________________________________________|\n5'-CAU...ACCAA_______U_____GGACAGACC________UGCCG_________AUCAC...UGA-3'\n______________UAUGCAU_GCAGU_________GUUUCACU_____CGGGGGAUU\n______________||::||:_|||:|_________||||||||_____|:|||||||\n______________AUGUGUG_CGUUA_________CAAAGUGA_____GUCCCCUAA\n3'-UUU...UUCUG_______U_____AGCAA__________________________AGGUA...GCA-5'\n_____________|____________________________________________|\n_____________73___________________________________________37\n |
276 -- 282 |
38 -- 44 |
-32.397 kcal/mol |
13.138 kcal/mol |
4.76382 kcal/mol |
238 283@LB@ | |@LB@5'-CAU...ACCAA U GGACAGACC UGCCG AUCAC...UGA-3'@LB@ UAUGCAU GCAGU GUUUCACU CGGGGGAUU@LB@ ||::||: |||:| |||||||| |:|||||||@LB@ AUGUGUG CGUUA CAAAGUGA GUCCCCUAA@LB@3'-UUU...UUCUG U AGCAA AGGUA...GCA-5'@LB@ | |@LB@ 73 37@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -32.397 kcal/mol@LB@Unfolding Energy - mRNA 13.138 kcal/mol@LB@Unfolding Energy - sRNA 4.76382 kcal/mol@LB@@LB@Position - mRNA 239 -- 282@LB@Position - sRNA 38 -- 72@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 38 -- 44@LB@ |
98 |
0.004518 |
0.1538 |
b2193 |
narP |
-14.47 |
0.028569 |
155 -- 204 |
31 -- 74 |
response regulator in two-component regulatory system with NarQ |
|
_____________154________________________________________________205\n_____________|__________________________________________________|\n5'-UUG...CCAAC_______UCAA___UAA______UAAUAAAAC______A__CUA______CUGAA...AAG-3'\n______________GCUACGC____ACA___UGAUUC_________CUCAGG_GA___CUAUGC\n______________:||||:|____|||___::||||_________||||||_||___|:||||\n______________UGAUGUG____UGU___GUUAAG_________GAGUCC_CU___GGUACG\n3'-UUU...GUUUC______________C________CAACAAAGU______C__AAA______AAUAU...GCA-5'\n_____________|__________________________________________________|\n_____________75_________________________________________________30\n |
155 -- 161 |
68 -- 74 |
-27.903 kcal/mol |
6.17297 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UUG...CCAAC UCAA UAA UAAUAAAAC A CUA CUGAA...AAG-3'@LB@ GCUACGC ACA UGAUUC CUCAGG GA CUAUGC@LB@ :||||:| ||| ::|||| |||||| || |:||||@LB@ UGAUGUG UGU GUUAAG GAGUCC CU GGUACG@LB@3'-UUU...GUUUC C CAACAAAGU C AAA AAUAU...GCA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -27.903 kcal/mol@LB@Unfolding Energy - mRNA 6.17297 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 68 -- 74@LB@ |
153 |
0.007486 |
0.1668 |
b1732 |
katE |
-14.34 |
0.030774 |
245 -- 275 |
42 -- 74 |
catalase HPII heme d-containing |
|
_____________244___________________________________276\n_____________|_____________________________________|\n5'-UGG...UCACC________AUUC______AG__AA_____________AUGGA...ACG-3'\n______________ACUACACG____CAGCGA__CG_______AC_CGGGG\n______________|||||||:____||||:|__||_______||_|:|||\n______________UGAUGUGU____GUCGUU__GC_______UG_GUCCC\n3'-UUU...GUUUC__________________AA__AACAAAG__A_____CUAAA...GCA-5'\n_____________|_____________________________________|\n_____________75____________________________________41\n |
246 -- 252 |
67 -- 73 |
-24.7059 kcal/mol |
5.60497 kcal/mol |
4.7632 kcal/mol |
244 276@LB@ | |@LB@5'-UGG...UCACC AUUC AG AA AUGGA...ACG-3'@LB@ ACUACACG CAGCGA CG AC CGGGG@LB@ |||||||: ||||:| || || |:|||@LB@ UGAUGUGU GUCGUU GC UG GUCCC@LB@3'-UUU...GUUUC AA AACAAAG A CUAAA...GCA-5'@LB@ | |@LB@ 75 41@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.7059 kcal/mol@LB@Unfolding Energy - mRNA 5.60497 kcal/mol@LB@Unfolding Energy - sRNA 4.7632 kcal/mol@LB@@LB@Position - mRNA 245 -- 275@LB@Position - sRNA 42 -- 74@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 67 -- 73@LB@ |
31 |
0.0004964 |
0.05552 |
b2325 |
yfcL |
-14.31 |
0.031288 |
272 -- 297 |
32 -- 57 |
uncharacterized protein |
|
_____________271__________________________298\n_____________|____________________________|\n5'-AAC...GAUGA______________U___U____G____GCC-3'\n______________GUUGUUU_GC_CAG_GGG_AUUU_CGUG\n______________|||||||_:|_|||_|||_||||_|:||\n______________CAACAAA_UG_GUC_CCC_UAAA_GUAC\n3'-UUU...UUAAG_______G__A____________G____GAAUA...GCA-5'\n_____________|____________________________|\n_____________58___________________________31\n |
272 -- 278 |
51 -- 57 |
-23.7407 kcal/mol |
4.96676 kcal/mol |
4.4642 kcal/mol |
271 298@LB@ | |@LB@5'-AAC...GAUGA U U G GCC-3'@LB@ GUUGUUU GC CAG GGG AUUU CGUG@LB@ ||||||| :| ||| ||| |||| |:||@LB@ CAACAAA UG GUC CCC UAAA GUAC@LB@3'-UUU...UUAAG G A G GAAUA...GCA-5'@LB@ | |@LB@ 58 31@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -23.7407 kcal/mol@LB@Unfolding Energy - mRNA 4.96676 kcal/mol@LB@Unfolding Energy - sRNA 4.4642 kcal/mol@LB@@LB@Position - mRNA 272 -- 297@LB@Position - sRNA 32 -- 57@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 51 -- 57@LB@ |
181 |
0.009071 |
0.1747 |
b3962 |
sthA |
-14.30 |
0.031527 |
83 -- 114 |
34 -- 76 |
pyridine nucleotide transhydrogenase soluble |
|
_____________82___________________________________________115\n_____________|____________________________________________|\n5'-UAC...GAAAC____AAA___AA_______________________AU__AG___GAUAA...CAG-3'\n______________AGAC___GCA__GGC____________CGCUCAGG__AU__CCA\n______________||||___:||__:||____________|:||||||__||__|||\n______________UCUG___UGU__UCG____________GUGAGUCC__UA__GGU\n3'-UUU...CCGUU____AUG___G____UUAAGCAACAAA________CC__AA___ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________77___________________________________________33\n |
99 -- 105 |
43 -- 49 |
-23.8174 kcal/mol |
4.70621 kcal/mol |
4.816 kcal/mol |
82 115@LB@ | |@LB@5'-UAC...GAAAC AAA AA AU AG GAUAA...CAG-3'@LB@ AGAC GCA GGC CGCUCAGG AU CCA@LB@ |||| :|| :|| |:|||||| || |||@LB@ UCUG UGU UCG GUGAGUCC UA GGU@LB@3'-UUU...CCGUU AUG G UUAAGCAACAAA CC AA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -23.8174 kcal/mol@LB@Unfolding Energy - mRNA 4.70621 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 83 -- 114@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 43 -- 49@LB@ |
163 |
0.007762 |
0.1668 |
b0394 |
mak |
-14.23 |
0.032787 |
242 -- 265 |
40 -- 75 |
manno(fructo)kinase |
|
_____________241__________________________________266\n_____________|____________________________________|\n5'-GUU...GAAGU________UG______G___________________GCAGU...GUG-3'\n______________GAUUGCAC__GGCGAU_____________CAGGGGA\n______________||:|:|||__:||:||_____________|||||||\n______________CUGAUGUG__UCGUUA_____________GUCCCCU\n3'-UUU...CGUUU________UG______AGCAACAAAGUGA_______AAAGG...GCA-5'\n_____________|____________________________________|\n_____________76___________________________________39\n |
259 -- 265 |
40 -- 46 |
-27.5886 kcal/mol |
8.58508 kcal/mol |
4.77786 kcal/mol |
241 266@LB@ | |@LB@5'-GUU...GAAGU UG G GCAGU...GUG-3'@LB@ GAUUGCAC GGCGAU CAGGGGA@LB@ ||:|:||| :||:|| |||||||@LB@ CUGAUGUG UCGUUA GUCCCCU@LB@3'-UUU...CGUUU UG AGCAACAAAGUGA AAAGG...GCA-5'@LB@ | |@LB@ 76 39@LB@@LB@@LB@Energy -14.23 kcal/mol@LB@Hybridization Energy -27.5886 kcal/mol@LB@Unfolding Energy - mRNA 8.58508 kcal/mol@LB@Unfolding Energy - sRNA 4.77786 kcal/mol@LB@@LB@Position - mRNA 242 -- 265@LB@Position - sRNA 40 -- 75@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 40 -- 46@LB@ |
70 |
0.002881 |
0.1417 |
b4144 |
yjeI |
-14.17 |
0.033933 |
177 -- 235 |
31 -- 99 |
DUF4156 family lipoprotein |
|
_____________176______________________________________________________________________236\n_____________|________________________________________________________________________|\n5'-GCA...CGUCC_________AUU________G__UA______________AA_______________CA______G__G____CGCGC...GCA-3'\n______________AGCUCAUUG______AUGGG_AA__AC_AUGCAC_GUAA__________UACUUAG__GGGAUU_UC_GUGC\n______________|||:|||:|______|||||_||__||_|::|||_|:||__________:|||:||__||||||_||_:|||\n______________UCGGGUAGC______UACCC_UU__UG_UGUGUG_CGUU__________GUGAGUC__CCCUAA_AG_UACG\n_____3'-UUUUUU_________ACCCUC_____G__UC__A______U____AAGCAACAAA__________________G____AAUAU...GCA-5'\n_____________|________________________________________________________________________|\n_____________100______________________________________________________________________30\n |
213 -- 219 |
44 -- 50 |
-46.9384 kcal/mol |
12.7048 kcal/mol |
20.0691 kcal/mol |
176 236@LB@ | |@LB@5'-GCA...CGUCC AUU G UA AA CA G G CGCGC...GCA-3'@LB@ AGCUCAUUG AUGGG AA AC AUGCAC GUAA UACUUAG GGGAUU UC GUGC@LB@ |||:|||:| ||||| || || |::||| |:|| :|||:|| |||||| || :|||@LB@ UCGGGUAGC UACCC UU UG UGUGUG CGUU GUGAGUC CCCUAA AG UACG@LB@ 3'-UUUUUU ACCCUC G UC A U AAGCAACAAA G AAUAU...GCA-5'@LB@ | |@LB@ 100 30@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -46.9384 kcal/mol@LB@Unfolding Energy - mRNA 12.7048 kcal/mol@LB@Unfolding Energy - sRNA 20.0691 kcal/mol@LB@@LB@Position - mRNA 177 -- 235@LB@Position - sRNA 31 -- 99@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 44 -- 50@LB@ |
90 |
0.004009 |
0.1538 |
b3152 |
yraR |
-13.99 |
0.037452 |
47 -- 72 |
45 -- 75 |
putative nucleoside-diphosphate-sugar epimerase |
|
_____________46______________________________73\n_____________|_______________________________|\n5'-ACU...UCAGU_____AA___________UC___________UGCUU...CGA-3'\n______________GAUUA___ACGGCAAUUU______UUACUCA\n______________||:||___||:||||||:______|:|||||\n______________CUGAU___UGUCGUUAAG______AGUGAGU\n3'-UUU...CGUUU_____GUG__________CAACAA_______CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
66 -- 72 |
45 -- 51 |
-19.6514 kcal/mol |
1.92306 kcal/mol |
3.74078 kcal/mol |
46 73@LB@ | |@LB@5'-ACU...UCAGU AA UC UGCUU...CGA-3'@LB@ GAUUA ACGGCAAUUU UUACUCA@LB@ ||:|| ||:||||||: |:|||||@LB@ CUGAU UGUCGUUAAG AGUGAGU@LB@3'-UUU...CGUUU GUG CAACAA CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -13.99 kcal/mol@LB@Hybridization Energy -19.6514 kcal/mol@LB@Unfolding Energy - mRNA 1.92306 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 47 -- 72@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 45 -- 51@LB@ |
140 |
0.006445 |
0.1605 |
b0325 |
yahK |
-13.93 |
0.038719 |
67 -- 79 |
43 -- 55 |
broad specificity NADPH-dependent aldehyde reductase Zn-containing |
|
_____________66____________80\n_____________|_____________|\n5'-UUA...UGCUC_____________CUCGC...AAA-3'\n______________UGUUUCAUUCAGG\n______________|||||||:|||||\n______________ACAAAGUGAGUCC\n3'-UUU...AAGCA_____________CCUAA...GCA-5'\n_____________|_____________|\n_____________56____________42\n |
73 -- 79 |
43 -- 49 |
-18.9036 kcal/mol |
3.47822 kcal/mol |
1.49792 kcal/mol |
66 80@LB@ | |@LB@5'-UUA...UGCUC CUCGC...AAA-3'@LB@ UGUUUCAUUCAGG@LB@ |||||||:|||||@LB@ ACAAAGUGAGUCC@LB@3'-UUU...AAGCA CCUAA...GCA-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -18.9036 kcal/mol@LB@Unfolding Energy - mRNA 3.47822 kcal/mol@LB@Unfolding Energy - sRNA 1.49792 kcal/mol@LB@@LB@Position - mRNA 67 -- 79@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 43 -- 49@LB@ |
13 |
0.0001005 |
0.0245 |
b1921 |
fliZ |
-13.92 |
0.038869 |
246 -- 263 |
63 -- 78 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________245________________264\n_____________|__________________|\n5'-UGC...AUCUU_______UUAA_______CAGAC...AUC-3'\n______________AAAGACU____ACACAGC\n______________|||||||____|||||||\n______________UUUCUGA____UGUGUCG\n3'-UUU...ACCCG_______UG_________UUAAG...GCA-5'\n_____________|__________________|\n_____________79_________________62\n |
257 -- 263 |
63 -- 69 |
-17.8578 kcal/mol |
0.69523 kcal/mol |
3.24195 kcal/mol |
245 264@LB@ | |@LB@5'-UGC...AUCUU UUAA CAGAC...AUC-3'@LB@ AAAGACU ACACAGC@LB@ ||||||| |||||||@LB@ UUUCUGA UGUGUCG@LB@3'-UUU...ACCCG UG UUAAG...GCA-5'@LB@ | |@LB@ 79 62@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -17.8578 kcal/mol@LB@Unfolding Energy - mRNA 0.69523 kcal/mol@LB@Unfolding Energy - sRNA 3.24195 kcal/mol@LB@@LB@Position - mRNA 246 -- 263@LB@Position - sRNA 63 -- 78@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 63 -- 69@LB@ |
135 |
0.006184 |
0.1605 |
b0637 |
rsfS |
-13.92 |
0.038847 |
179 -- 195 |
40 -- 56 |
ribosomal silencing factor |
|
_____________178_______________196\n_____________|_________________|\n5'-AUU...UCUAU___A_____C_______AAAAC...UCA-3'\n______________UUG_UUCAC_CAGGGGG\n______________|||_|||||_||||||:\n______________AAC_AAGUG_GUCCCCU\n3'-UUU...UAAGC___A_____A_______AAAGG...GCA-5'\n_____________|_________________|\n_____________57________________39\n |
189 -- 195 |
40 -- 46 |
-20.5369 kcal/mol |
4.69018 kcal/mol |
1.92548 kcal/mol |
178 196@LB@ | |@LB@5'-AUU...UCUAU A C AAAAC...UCA-3'@LB@ UUG UUCAC CAGGGGG@LB@ ||| ||||| ||||||:@LB@ AAC AAGUG GUCCCCU@LB@3'-UUU...UAAGC A A AAAGG...GCA-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -20.5369 kcal/mol@LB@Unfolding Energy - mRNA 4.69018 kcal/mol@LB@Unfolding Energy - sRNA 1.92548 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
21 |
0.0001827 |
0.02926 |
b1937 |
fliE |
-13.91 |
0.039102 |
192 -- 221 |
38 -- 77 |
flagellar basal-body component |
|
_____________191________________________________________222\n_____________|__________________________________________|\n5'-CUG...UCCGG_____GAGA___U_______A_____________________GAAGG...GUU-3'\n______________GAGAC____AUG_CAGCGAU_____________CAGGGGAUU\n______________:||||____|::_||||:||_____________|||||||||\n______________UUCUG____UGU_GUCGUUA_____________GUCCCCUAA\n3'-UUU...CCCGU_____AUG____________AGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|__________________________________________|\n_____________78_________________________________________37\n |
215 -- 221 |
38 -- 44 |
-25.7557 kcal/mol |
7.06678 kcal/mol |
4.77969 kcal/mol |
191 222@LB@ | |@LB@5'-CUG...UCCGG GAGA U A GAAGG...GUU-3'@LB@ GAGAC AUG CAGCGAU CAGGGGAUU@LB@ :|||| |:: ||||:|| |||||||||@LB@ UUCUG UGU GUCGUUA GUCCCCUAA@LB@3'-UUU...CCCGU AUG AGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 78 37@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -25.7557 kcal/mol@LB@Unfolding Energy - mRNA 7.06678 kcal/mol@LB@Unfolding Energy - sRNA 4.77969 kcal/mol@LB@@LB@Position - mRNA 192 -- 221@LB@Position - sRNA 38 -- 77@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 38 -- 44@LB@ |
4 |
8.9e-06 |
0.006694 |
b3281 |
aroE |
-13.87 |
0.039990 |
230 -- 259 |
45 -- 75 |
dehydroshikimate reductase NAD(P)-binding |
|
_____________229_____________________________260\n_____________|_______________________________|\n5'-UUU...AAUCC___A__C________A___CCA_________UCAGC...AUG-3'\n______________GAU_GC_CACAGCAA_UCG____UUCAUUCA\n______________||:_:|_||||||||_|||____||||:|||\n______________CUG_UG_GUGUCGUU_AGC____AAGUGAGU\n3'-UUU...CGUUU___A__U________A___AACA________CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
253 -- 259 |
45 -- 51 |
-26.2723 kcal/mol |
8.66309 kcal/mol |
3.74078 kcal/mol |
229 260@LB@ | |@LB@5'-UUU...AAUCC A C A CCA UCAGC...AUG-3'@LB@ GAU GC CACAGCAA UCG UUCAUUCA@LB@ ||: :| |||||||| ||| ||||:|||@LB@ CUG UG GUGUCGUU AGC AAGUGAGU@LB@3'-UUU...CGUUU A U A AACA CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.2723 kcal/mol@LB@Unfolding Energy - mRNA 8.66309 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 230 -- 259@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 45 -- 51@LB@ |
152 |
0.007399 |
0.1668 |
b0591 |
entS |
-13.87 |
0.039944 |
258 -- 287 |
45 -- 70 |
enterobactin exporter iron-regulated |
|
_____________257____________________________288\n_____________|______________________________|\n5'-AAU...CGUUU_________UUCC___CUC______U____AUUGU...UGG-3'\n______________CGCGCAGUA____UCG___GUUUCA_CUCA\n______________|:|:|||:|____|||___||||||_||||\n______________GUGUGUCGU____AGC___CAAAGU_GAGU\n3'-UUU...CUGAU_________UA_____AA____________CCCCU...GCA-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
260 -- 266 |
62 -- 68 |
-23.1768 kcal/mol |
5.59312 kcal/mol |
3.71317 kcal/mol |
257 288@LB@ | |@LB@5'-AAU...CGUUU UUCC CUC U AUUGU...UGG-3'@LB@ CGCGCAGUA UCG GUUUCA CUCA@LB@ |:|:|||:| ||| |||||| ||||@LB@ GUGUGUCGU AGC CAAAGU GAGU@LB@3'-UUU...CUGAU UA AA CCCCU...GCA-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -23.1768 kcal/mol@LB@Unfolding Energy - mRNA 5.59312 kcal/mol@LB@Unfolding Energy - sRNA 3.71317 kcal/mol@LB@@LB@Position - mRNA 258 -- 287@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 62 -- 68@LB@ |
120 |
0.005393 |
0.1553 |
b0523 |
purE |
-13.83 |
0.040764 |
102 -- 146 |
30 -- 75 |
N5-carboxyaminoimidazole ribonucleotide mutase |
|
_____________101________________________________________________147\n_____________|__________________________________________________|\n5'-UGG...UUGCU____U____GC__C____C_____UUCC______UC______________AUUCU...UGA-3'\n______________GAUU_CACA__CA_GCAA__CGUU____UUGCUC______UUUCCGUGCU\n______________||:|_||||__||_||||__||||____|::|||______|||||:||||\n______________CUGA_GUGU__GU_CGUU__GCAA____AGUGAG______AAAGGUACGA\n3'-UUU...CGUUU____U_____________AA____CAA_______UCCCCU__________AUAUU...GCA-5'\n_____________|__________________________________________________|\n_____________76_________________________________________________29\n |
140 -- 146 |
30 -- 36 |
-29.2897 kcal/mol |
7.36654 kcal/mol |
8.08958 kcal/mol |
101 147@LB@ | |@LB@5'-UGG...UUGCU U GC C C UUCC UC AUUCU...UGA-3'@LB@ GAUU CACA CA GCAA CGUU UUGCUC UUUCCGUGCU@LB@ ||:| |||| || |||| |||| |::||| |||||:||||@LB@ CUGA GUGU GU CGUU GCAA AGUGAG AAAGGUACGA@LB@3'-UUU...CGUUU U AA CAA UCCCCU AUAUU...GCA-5'@LB@ | |@LB@ 76 29@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -29.2897 kcal/mol@LB@Unfolding Energy - mRNA 7.36654 kcal/mol@LB@Unfolding Energy - sRNA 8.08958 kcal/mol@LB@@LB@Position - mRNA 102 -- 146@LB@Position - sRNA 30 -- 75@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 30 -- 36@LB@ |
17 |
0.0001292 |
0.02674 |
b1854 |
pykA |
-13.69 |
0.043994 |
133 -- 157 |
36 -- 68 |
pyruvate kinase II |
|
_____________132_______________________________158\n_____________|_________________________________|\n5'-GAA...GCCAU______________A__________________AUGUU...ACG-3'\n______________CGCGGC_____GUU_UUUCAUUC___GGAUUUC\n______________|:|:||_____|||_|||||:||___|||||||\n______________GUGUCG_____CAA_AAAGUGAG___CCUAAAG\n3'-UUU...GAUGU______UUAAG___C________UCC_______GUACG...GCA-5'\n_____________|_________________________________|\n_____________69________________________________35\n |
151 -- 157 |
36 -- 42 |
-24.2432 kcal/mol |
5.79946 kcal/mol |
4.75078 kcal/mol |
132 158@LB@ | |@LB@5'-GAA...GCCAU A AUGUU...ACG-3'@LB@ CGCGGC GUU UUUCAUUC GGAUUUC@LB@ |:|:|| ||| |||||:|| |||||||@LB@ GUGUCG CAA AAAGUGAG CCUAAAG@LB@3'-UUU...GAUGU UUAAG C UCC GUACG...GCA-5'@LB@ | |@LB@ 69 35@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -24.2432 kcal/mol@LB@Unfolding Energy - mRNA 5.79946 kcal/mol@LB@Unfolding Energy - sRNA 4.75078 kcal/mol@LB@@LB@Position - mRNA 133 -- 157@LB@Position - sRNA 36 -- 68@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 36 -- 42@LB@ |
25 |
0.0002079 |
0.02926 |
b4064 |
ghxP |
-13.58 |
0.046769 |
115 -- 151 |
38 -- 73 |
guanine/hypoxanthine permease high affinity; guanine/hypoxanthine:H+ symporter |
|
_____________114____________________________________152\n_____________|______________________________________|\n5'-UCG...CAAAC___GA_____G__GAUAAC________GG_________GUCCG...UAA-3'\n______________CUG___GCAG_AA______GUUUCGCU__CAGGGGAUU\n______________||:___:|||_||______|||||:||__|||||||||\n______________GAU___UGUC_UU______CAAAGUGA__GUCCCCUAA\n3'-UUU...UUUCU___GUG____G__AAGCAA___________________AGGUA...GCA-5'\n_____________|______________________________________|\n_____________74_____________________________________37\n |
145 -- 151 |
38 -- 44 |
-32.2199 kcal/mol |
13.8672 kcal/mol |
4.77333 kcal/mol |
114 152@LB@ | |@LB@5'-UCG...CAAAC GA G GAUAAC GG GUCCG...UAA-3'@LB@ CUG GCAG AA GUUUCGCU CAGGGGAUU@LB@ ||: :||| || |||||:|| |||||||||@LB@ GAU UGUC UU CAAAGUGA GUCCCCUAA@LB@3'-UUU...UUUCU GUG G AAGCAA AGGUA...GCA-5'@LB@ | |@LB@ 74 37@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -32.2199 kcal/mol@LB@Unfolding Energy - mRNA 13.8672 kcal/mol@LB@Unfolding Energy - sRNA 4.77333 kcal/mol@LB@@LB@Position - mRNA 115 -- 151@LB@Position - sRNA 38 -- 73@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 38 -- 44@LB@ |
137 |
0.006282 |
0.1605 |
b0123 |
cueO |
-13.57 |
0.047118 |
144 -- 176 |
48 -- 78 |
multicopper oxidase (laccase) |
|
_____________143________________________________177\n_____________|__________________________________|\n5'-CUG...AGGGG___________U__A_______AUU_________CUGCU...CGU-3'\n______________AAGGACUAUGC_CA_C_GUUUG___UUGUUUCGC\n______________||:|||||::|_||_|_:||:|___|||||||:|\n______________UUUCUGAUGUG_GU_G_UAAGC___AACAAAGUG\n3'-UUU...ACCCG___________U__C_U_________________AGUCC...GCA-5'\n_____________|__________________________________|\n_____________79_________________________________47\n |
170 -- 176 |
48 -- 54 |
-24.1368 kcal/mol |
6.88378 kcal/mol |
3.68736 kcal/mol |
143 177@LB@ | |@LB@5'-CUG...AGGGG U A AUU CUGCU...CGU-3'@LB@ AAGGACUAUGC CA C GUUUG UUGUUUCGC@LB@ ||:|||||::| || | :||:| |||||||:|@LB@ UUUCUGAUGUG GU G UAAGC AACAAAGUG@LB@3'-UUU...ACCCG U C U AGUCC...GCA-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -24.1368 kcal/mol@LB@Unfolding Energy - mRNA 6.88378 kcal/mol@LB@Unfolding Energy - sRNA 3.68736 kcal/mol@LB@@LB@Position - mRNA 144 -- 176@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 48 -- 54@LB@ |
23 |
0.0001955 |
0.02926 |
b3846 |
fadB |
-13.56 |
0.047358 |
39 -- 83 |
35 -- 77 |
fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________38________________________________________________84\n_____________|_________________________________________________|\n5'-AGU...ACCUU___U__C_____CUU____CA____________C___A_C_U_______GCCGA...CUG-3'\n______________AAG_CU_CGCAU___AGCA__UCGU____UCAU_CAG_G_G_GAUUUCU\n______________|||_||_|:||:___||||__||||____|||:_|||_|_|_||||||:\n______________UUC_GA_GUGUG___UCGU__AGCA____AGUG_GUC_C_C_CUAAAGG\n3'-UUU...CCCGU___U__U____________UA____ACAA____A_______________UACGA...GCA-5'\n_____________|_________________________________________________|\n_____________78________________________________________________34\n |
77 -- 83 |
35 -- 41 |
-27.7125 kcal/mol |
9.35112 kcal/mol |
4.80542 kcal/mol |
38 84@LB@ | |@LB@5'-AGU...ACCUU U C CUU CA C A C U GCCGA...CUG-3'@LB@ AAG CU CGCAU AGCA UCGU UCAU CAG G G GAUUUCU@LB@ ||| || |:||: |||| |||| |||: ||| | | ||||||:@LB@ UUC GA GUGUG UCGU AGCA AGUG GUC C C CUAAAGG@LB@3'-UUU...CCCGU U U UA ACAA A UACGA...GCA-5'@LB@ | |@LB@ 78 34@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -27.7125 kcal/mol@LB@Unfolding Energy - mRNA 9.35112 kcal/mol@LB@Unfolding Energy - sRNA 4.80542 kcal/mol@LB@@LB@Position - mRNA 39 -- 83@LB@Position - sRNA 35 -- 77@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 35 -- 41@LB@ |
123 |
0.005464 |
0.1553 |
b3746 |
ravA |
-13.51 |
0.048673 |
243 -- 263 |
41 -- 65 |
hexameric AAA+ MoxR family ATPase putative molecular chaperone |
|
_____________242_______________________264\n_____________|_________________________|\n5'-UGA...GCCUG____________GAAA_________CUUUA...UAU-3'\n______________AGCAGUUCGUUG________AGGGG\n______________||||:|||||||________|||||\n______________UCGUUAAGCAAC________UCCCC\n3'-UUU...GUGUG____________AAAGUGAG_____UAAAG...GCA-5'\n_____________|_________________________|\n_____________66________________________40\n |
248 -- 254 |
54 -- 60 |
-25.3509 kcal/mol |
7.14336 kcal/mol |
4.70281 kcal/mol |
242 264@LB@ | |@LB@5'-UGA...GCCUG GAAA CUUUA...UAU-3'@LB@ AGCAGUUCGUUG AGGGG@LB@ ||||:||||||| |||||@LB@ UCGUUAAGCAAC UCCCC@LB@3'-UUU...GUGUG AAAGUGAG UAAAG...GCA-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.51 kcal/mol@LB@Hybridization Energy -25.3509 kcal/mol@LB@Unfolding Energy - mRNA 7.14336 kcal/mol@LB@Unfolding Energy - sRNA 4.70281 kcal/mol@LB@@LB@Position - mRNA 243 -- 263@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 54 -- 60@LB@ |
73 |
0.00298 |
0.1437 |
b0474 |
adk |
-13.48 |
0.049381 |
180 -- 198 |
34 -- 50 |
adenylate kinase |
|
_____________179_________________199\n_____________|___________________|\n5'-ACC...CGACA_____UA____________CAAUG...AUA-3'\n______________CAUUU__AGGGGAUUUUCG\n______________||:|:__|||||||||:|:\n______________GUGAG__UCCCCUAAAGGU\n3'-UUU...ACAAA___________________ACGAA...GCA-5'\n_____________|___________________|\n_____________51__________________33\n |
191 -- 197 |
35 -- 41 |
-19.9961 kcal/mol |
4.64453 kcal/mol |
1.87382 kcal/mol |
179 199@LB@ | |@LB@5'-ACC...CGACA UA CAAUG...AUA-3'@LB@ CAUUU AGGGGAUUUUCG@LB@ ||:|: |||||||||:|:@LB@ GUGAG UCCCCUAAAGGU@LB@3'-UUU...ACAAA ACGAA...GCA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9961 kcal/mol@LB@Unfolding Energy - mRNA 4.64453 kcal/mol@LB@Unfolding Energy - sRNA 1.87382 kcal/mol@LB@@LB@Position - mRNA 180 -- 198@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 35 -- 41@LB@ |
61 |
0.002486 |
0.1417 |
b1487 |
ddpA |
-13.46 |
0.049908 |
168 -- 192 |
43 -- 71 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________167___________________________193\n_____________|_____________________________|\n5'-UCA...CCCUG________________CAG____A_____AAACU...UGA-3'\n______________GCACACAGCA___CGU____UUA_UCAGG\n______________:|||||||||___|||____|:|_|||||\n______________UGUGUGUCGU___GCA____AGU_AGUCC\n3'-UUU...UCUGA__________UAA___ACAA___G_____CCUAA...GCA-5'\n_____________|_____________________________|\n_____________72____________________________42\n |
171 -- 177 |
62 -- 68 |
-25.043 kcal/mol |
7.26137 kcal/mol |
4.32409 kcal/mol |
167 193@LB@ | |@LB@5'-UCA...CCCUG CAG A AAACU...UGA-3'@LB@ GCACACAGCA CGU UUA UCAGG@LB@ :||||||||| ||| |:| |||||@LB@ UGUGUGUCGU GCA AGU AGUCC@LB@3'-UUU...UCUGA UAA ACAA G CCUAA...GCA-5'@LB@ | |@LB@ 72 42@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -25.043 kcal/mol@LB@Unfolding Energy - mRNA 7.26137 kcal/mol@LB@Unfolding Energy - sRNA 4.32409 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 43 -- 71@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 62 -- 68@LB@ |
91 |
0.00412 |
0.1538 |
b0931 |
pncB |
-13.41 |
0.051237 |
255 -- 284 |
48 -- 77 |
nicotinate phosphoribosyltransferase |
|
_____________254______________________________285\n_____________|________________________________|\n5'-AUG...CUUAU__________AU_______GC___________CACUA...UGC-3'\n______________AAG_UUGCAU__GCAGCAA__CG_UGUUUCAU\n______________|||_:|:||:__:||||||__||_|||||||:\n______________UUC_GAUGUG__UGUCGUU__GC_ACAAAGUG\n3'-UUU...CCCGU___U_______________AA__A________AGUCC...GCA-5'\n_____________|________________________________|\n_____________78_______________________________47\n |
278 -- 284 |
48 -- 54 |
-26.8209 kcal/mol |
9.72536 kcal/mol |
3.68729 kcal/mol |
254 285@LB@ | |@LB@5'-AUG...CUUAU AU GC CACUA...UGC-3'@LB@ AAG UUGCAU GCAGCAA CG UGUUUCAU@LB@ ||| :|:||: :|||||| || |||||||:@LB@ UUC GAUGUG UGUCGUU GC ACAAAGUG@LB@3'-UUU...CCCGU U AA A AGUCC...GCA-5'@LB@ | |@LB@ 78 47@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -26.8209 kcal/mol@LB@Unfolding Energy - mRNA 9.72536 kcal/mol@LB@Unfolding Energy - sRNA 3.68729 kcal/mol@LB@@LB@Position - mRNA 255 -- 284@LB@Position - sRNA 48 -- 77@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 48 -- 54@LB@ |
51 |
0.001671 |
0.1153 |
b3527 |
yhjJ |
-13.34 |
0.053290 |
153 -- 204 |
31 -- 75 |
putative periplasmic M16 family chaperone |
|
_____________152_____________________________________________________205\n_____________|_______________________________________________________|\n5'-CUC...UGACC___A___G_____UU___UAUUACCAGGAUA___GA____________CA_____AGGGC...GGC-3'\n______________GAC_ACG_GCAGU__UUU_____________GUU____UCAGGGG_UU__CAUGC\n______________|||_||:_:|||:__||:_____________|||____|||||||_||__|||||\n______________CUG_UGU_UGUCG__AAG_____________CAA____AGUCCCC_AA__GUACG\n3'-UUU...CGUUU___A___G_____UU___CAA_____________AGUG_______U__AG_____AAUAU...GCA-5'\n_____________|_______________________________________________________|\n_____________76______________________________________________________30\n |
189 -- 195 |
41 -- 47 |
-32.6504 kcal/mol |
12.0549 kcal/mol |
7.26183 kcal/mol |
152 205@LB@ | |@LB@5'-CUC...UGACC A G UU UAUUACCAGGAUA GA CA AGGGC...GGC-3'@LB@ GAC ACG GCAGU UUU GUU UCAGGGG UU CAUGC@LB@ ||| ||: :|||: ||: ||| ||||||| || |||||@LB@ CUG UGU UGUCG AAG CAA AGUCCCC AA GUACG@LB@3'-UUU...CGUUU A G UU CAA AGUG U AG AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -32.6504 kcal/mol@LB@Unfolding Energy - mRNA 12.0549 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 153 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 41 -- 47@LB@ |
46 |
0.001357 |
0.1038 |
b1235 |
rssB |
-13.33 |
0.053430 |
184 -- 194 |
40 -- 50 |
PcnB-degradosome interaction factor; response regulator |
|
_____________183_________195\n_____________|___________|\n5'-AAU...AAAGC__G________GAGAA...CAA-3'\n______________CA_UCAGGGGA\n______________||_||||||||\n______________GU_AGUCCCCU\n3'-UUU...ACAAA__G________AAAGG...GCA-5'\n_____________|___________|\n_____________51__________39\n |
188 -- 194 |
40 -- 46 |
-19.1981 kcal/mol |
4.11697 kcal/mol |
1.75243 kcal/mol |
183 195@LB@ | |@LB@5'-AAU...AAAGC G GAGAA...CAA-3'@LB@ CA UCAGGGGA@LB@ || ||||||||@LB@ GU AGUCCCCU@LB@3'-UUU...ACAAA G AAAGG...GCA-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -19.1981 kcal/mol@LB@Unfolding Energy - mRNA 4.11697 kcal/mol@LB@Unfolding Energy - sRNA 1.75243 kcal/mol@LB@@LB@Position - mRNA 184 -- 194@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 40 -- 46@LB@ |
184 |
0.00937 |
0.1776 |
b2467 |
nudK |
-13.30 |
0.054361 |
69 -- 94 |
38 -- 78 |
GDP-mannose pyrophosphatase |
|
_____________68________________________________________95\n_____________|_________________________________________|\n5'-CAA...GGCAG______GU_________________________________AUUGA...AAG-3'\n______________AAGGAC__CAUGCGGCA_______________CAGGGGAUU\n______________||:|||__||::|:|||_______________|||||||||\n______________UUUCUG__GUGUGUCGU_______________GUCCCCUAA\n3'-UUU...ACCCG______AU_________UAAGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|_________________________________________|\n_____________79________________________________________37\n |
88 -- 94 |
38 -- 44 |
-30.5001 kcal/mol |
12.4248 kcal/mol |
4.77973 kcal/mol |
68 95@LB@ | |@LB@5'-CAA...GGCAG GU AUUGA...AAG-3'@LB@ AAGGAC CAUGCGGCA CAGGGGAUU@LB@ ||:||| ||::|:||| |||||||||@LB@ UUUCUG GUGUGUCGU GUCCCCUAA@LB@3'-UUU...ACCCG AU UAAGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 79 37@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -30.5001 kcal/mol@LB@Unfolding Energy - mRNA 12.4248 kcal/mol@LB@Unfolding Energy - sRNA 4.77973 kcal/mol@LB@@LB@Position - mRNA 69 -- 94@LB@Position - sRNA 38 -- 78@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 38 -- 44@LB@ |
41 |
0.0008963 |
0.07693 |
b1378 |
pfo |
-13.27 |
0.055135 |
136 -- 164 |
58 -- 78 |
pyruvate-flavodoxin oxidoreductase |
|
_____________135___________________________165\n_____________|_____________________________|\n5'-GCU...AAUUG_________UACUGGGC____________CGUGC...CAG-3'\n______________AAAGAUUAC________GCGCAGCAAUUU\n______________|||||:|||________:|:||||||||:\n______________UUUCUGAUG________UGUGUCGUUAAG\n3'-UUU...ACCCG_____________________________CAACA...GCA-5'\n_____________|_____________________________|\n_____________79____________________________57\n |
158 -- 164 |
58 -- 64 |
-22.0871 kcal/mol |
5.50788 kcal/mol |
3.31018 kcal/mol |
135 165@LB@ | |@LB@5'-GCU...AAUUG UACUGGGC CGUGC...CAG-3'@LB@ AAAGAUUAC GCGCAGCAAUUU@LB@ |||||:||| :|:||||||||:@LB@ UUUCUGAUG UGUGUCGUUAAG@LB@3'-UUU...ACCCG CAACA...GCA-5'@LB@ | |@LB@ 79 57@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -22.0871 kcal/mol@LB@Unfolding Energy - mRNA 5.50788 kcal/mol@LB@Unfolding Energy - sRNA 3.31018 kcal/mol@LB@@LB@Position - mRNA 136 -- 164@LB@Position - sRNA 58 -- 78@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 58 -- 64@LB@ |
12 |
9.939e-05 |
0.0245 |
b2308 |
hisQ |
-13.21 |
0.056865 |
186 -- 218 |
34 -- 75 |
histidine ABC transporter permease |
|
_____________185__________________________________________219\n_____________|____________________________________________|\n5'-GAU...CACAC___AGG___G_______________AU_________________GGUGU...UUG-3'\n______________GAC___ACA_GCAGCA___UGUUGU__________GGGUUUUCA\n______________|||___|||_:|||||___:|||||__________||:|||:||\n______________CUG___UGU_UGUCGU___GCAACA__________CCUAAAGGU\n3'-UUU...CGUUU___A_____G______UAA______AAGUGAGUCC_________ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________33\n |
212 -- 218 |
34 -- 40 |
-26.3199 kcal/mol |
8.29445 kcal/mol |
4.816 kcal/mol |
185 219@LB@ | |@LB@5'-GAU...CACAC AGG G AU GGUGU...UUG-3'@LB@ GAC ACA GCAGCA UGUUGU GGGUUUUCA@LB@ ||| ||| :||||| :||||| ||:|||:||@LB@ CUG UGU UGUCGU GCAACA CCUAAAGGU@LB@3'-UUU...CGUUU A G UAA AAGUGAGUCC ACGAA...GCA-5'@LB@ | |@LB@ 76 33@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -26.3199 kcal/mol@LB@Unfolding Energy - mRNA 8.29445 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 186 -- 218@LB@Position - sRNA 34 -- 75@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 34 -- 40@LB@ |
78 |
0.003218 |
0.1452 |
b1641 |
slyB |
-13.21 |
0.056987 |
203 -- 235 |
43 -- 75 |
outer membrane lipoprotein |
|
_____________202_________________________________236\n_____________|___________________________________|\n5'-CCG...UCAAU_____A___________G_________AUGG____UCUGU...AAG-3'\n______________GAUUA_ACGC_GU_AUU_GUUGUUUCA____UAGG\n______________||:||_||:|_|:_|||_|||||||||____:|||\n______________CUGAU_UGUG_CG_UAA_CAACAAAGU____GUCC\n3'-UUU...CGUUU_____G____U__U___G_________GA______CCUAA...GCA-5'\n_____________|___________________________________|\n_____________76__________________________________42\n |
221 -- 227 |
49 -- 55 |
-26.1882 kcal/mol |
8.63028 kcal/mol |
4.35266 kcal/mol |
202 236@LB@ | |@LB@5'-CCG...UCAAU A G AUGG UCUGU...AAG-3'@LB@ GAUUA ACGC GU AUU GUUGUUUCA UAGG@LB@ ||:|| ||:| |: ||| ||||||||| :|||@LB@ CUGAU UGUG CG UAA CAACAAAGU GUCC@LB@3'-UUU...CGUUU G U U G GA CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -26.1882 kcal/mol@LB@Unfolding Energy - mRNA 8.63028 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 203 -- 235@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 49 -- 55@LB@ |
72 |
0.002899 |
0.1417 |
b3688 |
yidQ |
-12.98 |
0.064171 |
231 -- 261 |
39 -- 71 |
DUF1375 family outer membrane protein |
|
_____________230_______________________________262\n_____________|_________________________________|\n5'-AUG...UCAUG___________AAUGACA__________A____GCUCC...GAA-3'\n______________AUAUGCAGCGG_________UUACUCGG_GGAU\n______________|:|::||||::_________|:||||:|_||||\n______________UGUGUGUCGUU_________AGUGAGUC_CCUA\n3'-UUU...UCUGA___________AAGCAACAA________C____AAGGU...GCA-5'\n_____________|_________________________________|\n_____________72________________________________38\n |
250 -- 256 |
44 -- 50 |
-25.1937 kcal/mol |
7.46905 kcal/mol |
4.74947 kcal/mol |
230 262@LB@ | |@LB@5'-AUG...UCAUG AAUGACA A GCUCC...GAA-3'@LB@ AUAUGCAGCGG UUACUCGG GGAU@LB@ |:|::||||:: |:||||:| ||||@LB@ UGUGUGUCGUU AGUGAGUC CCUA@LB@3'-UUU...UCUGA AAGCAACAA C AAGGU...GCA-5'@LB@ | |@LB@ 72 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1937 kcal/mol@LB@Unfolding Energy - mRNA 7.46905 kcal/mol@LB@Unfolding Energy - sRNA 4.74947 kcal/mol@LB@@LB@Position - mRNA 231 -- 261@LB@Position - sRNA 39 -- 71@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 44 -- 50@LB@ |
141 |
0.006483 |
0.1605 |
b2474 |
tmcA |
-12.94 |
0.065378 |
86 -- 105 |
35 -- 54 |
elongator methionine tRNA (ac4C34) acetyltransferase |
|
_____________85___________________106\n_____________|____________________|\n5'-GAU...AGACA__________U__CAC____CAGCA...UUG-3'\n______________GUUUCACUCA_GG___UUCU\n______________||||||||||_||___|||:\n______________CAAAGUGAGU_CC___AAGG\n3'-UUU...AGCAA__________C__CUA____UACGA...GCA-5'\n_____________|____________________|\n_____________55___________________34\n |
89 -- 95 |
45 -- 51 |
-18.4772 kcal/mol |
3.58569 kcal/mol |
1.95269 kcal/mol |
85 106@LB@ | |@LB@5'-GAU...AGACA U CAC CAGCA...UUG-3'@LB@ GUUUCACUCA GG UUCU@LB@ |||||||||| || |||:@LB@ CAAAGUGAGU CC AAGG@LB@3'-UUU...AGCAA C CUA UACGA...GCA-5'@LB@ | |@LB@ 55 34@LB@@LB@@LB@Energy -12.94 kcal/mol@LB@Hybridization Energy -18.4772 kcal/mol@LB@Unfolding Energy - mRNA 3.58569 kcal/mol@LB@Unfolding Energy - sRNA 1.95269 kcal/mol@LB@@LB@Position - mRNA 86 -- 105@LB@Position - sRNA 35 -- 54@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 45 -- 51@LB@ |
170 |
0.008354 |
0.1723 |
b3294 |
rplQ |
-12.86 |
0.068031 |
178 -- 204 |
31 -- 54 |
50S ribosomal subunit protein L17 |
|
_____________177_________________________205\n_____________|___________________________|\n5'-UAU...UUAAG________G__AA____AAGG______GCCAU...UCA-3'\n______________GUUUUACU_AG__GGAU____UCAUGC\n______________||||:|||_||__||||____:|||||\n______________CAAAGUGA_UC__CCUA____GGUACG\n3'-UUU...AGCAA________G__C_____AA________AAUAU...GCA-5'\n_____________|___________________________|\n_____________55__________________________30\n |
179 -- 185 |
47 -- 53 |
-21.6424 kcal/mol |
4.376 kcal/mol |
4.40484 kcal/mol |
177 205@LB@ | |@LB@5'-UAU...UUAAG G AA AAGG GCCAU...UCA-3'@LB@ GUUUUACU AG GGAU UCAUGC@LB@ ||||:||| || |||| :|||||@LB@ CAAAGUGA UC CCUA GGUACG@LB@3'-UUU...AGCAA G C AA AAUAU...GCA-5'@LB@ | |@LB@ 55 30@LB@@LB@@LB@Energy -12.86 kcal/mol@LB@Hybridization Energy -21.6424 kcal/mol@LB@Unfolding Energy - mRNA 4.376 kcal/mol@LB@Unfolding Energy - sRNA 4.40484 kcal/mol@LB@@LB@Position - mRNA 178 -- 204@LB@Position - sRNA 31 -- 54@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 47 -- 53@LB@ |
180 |
0.009034 |
0.1747 |
b3146 |
rsmI |
-12.76 |
0.071583 |
191 -- 238 |
34 -- 76 |
16S rRNA C1402 2'-O-ribose methyltransferase SAM-dependent |
|
_____________190____________________________________________________239\n_____________|______________________________________________________|\n5'-CAG...AAUAC____G____AAUGAAACA___C_______GC_GAUAAUU_______________GCUUU...AGG-3'\n______________GGAC_ACAC_________ACA_CAA_UCG__G_______CUCAGGG_____CCA\n______________:|||_||||_________|||_|||_|||__|_______|||||||_____|||\n______________UCUG_UGUG_________UGU_GUU_AGC__C_______GAGUCCC_____GGU\n3'-UUU...CCGUU____A________________C___A___AA_AAAGU_________CUAAA___ACGAA...GCA-5'\n_____________|______________________________________________________|\n_____________77_____________________________________________________33\n |
229 -- 235 |
42 -- 48 |
-25.3144 kcal/mol |
7.73901 kcal/mol |
4.816 kcal/mol |
190 239@LB@ | |@LB@5'-CAG...AAUAC G AAUGAAACA C GC GAUAAUU GCUUU...AGG-3'@LB@ GGAC ACAC ACA CAA UCG G CUCAGGG CCA@LB@ :||| |||| ||| ||| ||| | ||||||| |||@LB@ UCUG UGUG UGU GUU AGC C GAGUCCC GGU@LB@3'-UUU...CCGUU A C A AA AAAGU CUAAA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -25.3144 kcal/mol@LB@Unfolding Energy - mRNA 7.73901 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 191 -- 238@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 42 -- 48@LB@ |
186 |
0.009502 |
0.1776 |
b1631 |
rsxG |
-12.74 |
0.072174 |
210 -- 253 |
41 -- 74 |
SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex |
|
_____________209____________________________________________254\n_____________|______________________________________________|\n5'-CUG...UGAAA_____CCGAAA________UUA_____G______AUUUG___C___UUCAA...CGA-3'\n______________ACUAU______ACACGGCA___CGUUG___CGCU_____CAG_GGG\n______________||||:______||||:|||___|||||___|:||_____|||_|||\n______________UGAUG______UGUGUCGU___GCAAC___GUGA_____GUC_CCC\n3'-UUU...GUUUC___________________UAA_____AAA________________UAAAG...GCA-5'\n_____________|______________________________________________|\n_____________75_____________________________________________40\n |
222 -- 228 |
62 -- 68 |
-28.539 kcal/mol |
11.0247 kcal/mol |
4.77133 kcal/mol |
209 254@LB@ | |@LB@5'-CUG...UGAAA CCGAAA UUA G AUUUG C UUCAA...CGA-3'@LB@ ACUAU ACACGGCA CGUUG CGCU CAG GGG@LB@ ||||: ||||:||| ||||| |:|| ||| |||@LB@ UGAUG UGUGUCGU GCAAC GUGA GUC CCC@LB@3'-UUU...GUUUC UAA AAA UAAAG...GCA-5'@LB@ | |@LB@ 75 40@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -28.539 kcal/mol@LB@Unfolding Energy - mRNA 11.0247 kcal/mol@LB@Unfolding Energy - sRNA 4.77133 kcal/mol@LB@@LB@Position - mRNA 210 -- 253@LB@Position - sRNA 41 -- 74@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 62 -- 68@LB@ |
36 |
0.0006028 |
0.05893 |
b2398 |
yfeC |
-12.67 |
0.075056 |
159 -- 178 |
42 -- 76 |
DUF1323 family putative DNA-binding protein |
b2399 |
_____________158_________________________________179\n_____________|___________________________________|\n5'-AUA...CUAAU____C______________________________AAUUG...GCG-3'\n______________AGAC__CACAUA______________CAUUCAGGG\n______________||||__||||:|______________||:||||||\n______________UCUG__GUGUGU______________GUGAGUCCC\n3'-UUU...CCGUU____AU______CGUUAAGCAACAAA_________CUAAA...GCA-5'\n_____________|___________________________________|\n_____________77__________________________________41\n |
172 -- 178 |
42 -- 48 |
-21.7854 kcal/mol |
4.35612 kcal/mol |
4.76453 kcal/mol |
158 179@LB@ | |@LB@5'-AUA...CUAAU C AAUUG...GCG-3'@LB@ AGAC CACAUA CAUUCAGGG@LB@ |||| ||||:| ||:||||||@LB@ UCUG GUGUGU GUGAGUCCC@LB@3'-UUU...CCGUU AU CGUUAAGCAACAAA CUAAA...GCA-5'@LB@ | |@LB@ 77 41@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -21.7854 kcal/mol@LB@Unfolding Energy - mRNA 4.35612 kcal/mol@LB@Unfolding Energy - sRNA 4.76453 kcal/mol@LB@@LB@Position - mRNA 159 -- 178@LB@Position - sRNA 42 -- 76@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 42 -- 48@LB@ |
168 |
0.008282 |
0.1723 |
b3822 |
recQ |
-12.50 |
0.081546 |
124 -- 155 |
43 -- 77 |
ATP-dependent DNA helicase |
|
_____________123___________________________________156\n_____________|_____________________________________|\n5'-CGC...UCUCA_______AAA____U_______C_________G____CGCUG...UUA-3'\n______________GAGACUA___GCAU_GCAGUUU______UCGC_CAGG\n______________:||||||___:||:_|||:||:______||:|_||||\n______________UUCUGAU___UGUG_CGUUAAG______AGUG_GUCC\n3'-UUU...CCCGU_______G______U_______CAACAA____A____CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________78____________________________________42\n |
139 -- 145 |
58 -- 64 |
-25.7534 kcal/mol |
8.90299 kcal/mol |
4.3531 kcal/mol |
123 156@LB@ | |@LB@5'-CGC...UCUCA AAA U C G CGCUG...UUA-3'@LB@ GAGACUA GCAU GCAGUUU UCGC CAGG@LB@ :|||||| :||: |||:||: ||:| ||||@LB@ UUCUGAU UGUG CGUUAAG AGUG GUCC@LB@3'-UUU...CCCGU G U CAACAA A CCUAA...GCA-5'@LB@ | |@LB@ 78 42@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -25.7534 kcal/mol@LB@Unfolding Energy - mRNA 8.90299 kcal/mol@LB@Unfolding Energy - sRNA 4.3531 kcal/mol@LB@@LB@Position - mRNA 124 -- 155@LB@Position - sRNA 43 -- 77@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 58 -- 64@LB@ |
27 |
0.0003358 |
0.04376 |
b1784 |
yeaH |
-12.48 |
0.082239 |
130 -- 197 |
41 -- 99 |
UPF0229 family protein |
|
_____________129___________________________________________________________________198\n_____________|_____________________________________________________________________|\n5'-UGU...ACGAC___GAAC______CCUG___A_C_____CAC____GUA_________UGGCAAA___AG___G______CAUAU...CGA-3'\n______________AGC____CGUGGG____AGA_G_GGCAA___AGGC___GCAUACAGU_______UGU__UAC__GGGGG\n______________|||____||||||____|||_|_|||||___||:|___:||:||||:_______|||__:||__:||||\n______________UCG____GCACCC____UCU_C_CCGUU___UCUG___UGUGUGUCG_______ACA__GUG__UCCCC\n_____3'-UUUUUU___GGUA_____________A______________A___________UUAAGCA___AA___AG_____UAAAG...GCA-5'\n_____________|_____________________________________________________________________|\n_____________100___________________________________________________________________40\n |
170 -- 176 |
63 -- 69 |
-48.2653 kcal/mol |
18.2122 kcal/mol |
17.5731 kcal/mol |
129 198@LB@ | |@LB@5'-UGU...ACGAC GAAC CCUG A C CAC GUA UGGCAAA AG G CAUAU...CGA-3'@LB@ AGC CGUGGG AGA G GGCAA AGGC GCAUACAGU UGU UAC GGGGG@LB@ ||| |||||| ||| | ||||| ||:| :||:||||: ||| :|| :||||@LB@ UCG GCACCC UCU C CCGUU UCUG UGUGUGUCG ACA GUG UCCCC@LB@ 3'-UUUUUU GGUA A A UUAAGCA AA AG UAAAG...GCA-5'@LB@ | |@LB@ 100 40@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -48.2653 kcal/mol@LB@Unfolding Energy - mRNA 18.2122 kcal/mol@LB@Unfolding Energy - sRNA 17.5731 kcal/mol@LB@@LB@Position - mRNA 130 -- 197@LB@Position - sRNA 41 -- 99@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 63 -- 69@LB@ |
144 |
0.006569 |
0.1605 |
b2900 |
yqfB |
-12.46 |
0.083290 |
200 -- 238 |
34 -- 70 |
UPF0267 family protein |
|
_____________199_______________________________________239\n_____________|_________________________________________|\n5'-UUC...AGUAC________CAAA__ACA________UUUUUCAAC_______GGAUG...UCA-3'\n______________CAUGCAGC____CG_____UCACUU_________GUUUCCA\n______________||::||||____||_____|||||:_________:||||||\n______________GUGUGUCG____GC_____AGUGAG_________UAAAGGU\n3'-UUU...CUGAU________UUAA__AACAA______UCCCC___________ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________71________________________________________33\n |
232 -- 238 |
34 -- 40 |
-21.1736 kcal/mol |
3.92715 kcal/mol |
4.79237 kcal/mol |
199 239@LB@ | |@LB@5'-UUC...AGUAC CAAA ACA UUUUUCAAC GGAUG...UCA-3'@LB@ CAUGCAGC CG UCACUU GUUUCCA@LB@ ||::|||| || |||||: :||||||@LB@ GUGUGUCG GC AGUGAG UAAAGGU@LB@3'-UUU...CUGAU UUAA AACAA UCCCC ACGAA...GCA-5'@LB@ | |@LB@ 71 33@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -21.1736 kcal/mol@LB@Unfolding Energy - mRNA 3.92715 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 200 -- 238@LB@Position - sRNA 34 -- 70@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 34 -- 40@LB@ |
193 |
0.0098 |
0.1776 |
b0757 |
galK |
-12.45 |
0.083592 |
134 -- 176 |
33 -- 76 |
galactokinase |
|
_____________133____________________________________________177\n_____________|______________________________________________|\n5'-CAU...ACCGC________G_______AG__U___CGCG__G____C____A_____UUUCG...GUG-3'\n______________AGA__ACA_GCAGCAG__CG_UUG____CA_UCAG__GAU_UCCAU\n______________|||__|||_:|||||:__||_|||____||_||||__|||_|||||\n______________UCU__UGU_UGUCGUU__GC_AAC____GU_AGUC__CUA_AGGUA\n3'-UUU...CCGUU___GA___G_______AA______AAA___G____CC___A_____CGAAU...GCA-5'\n_____________|______________________________________________|\n_____________77_____________________________________________32\n |
141 -- 147 |
61 -- 67 |
-31.8657 kcal/mol |
14.6029 kcal/mol |
4.81602 kcal/mol |
133 177@LB@ | |@LB@5'-CAU...ACCGC G AG U CGCG G C A UUUCG...GUG-3'@LB@ AGA ACA GCAGCAG CG UUG CA UCAG GAU UCCAU@LB@ ||| ||| :|||||: || ||| || |||| ||| |||||@LB@ UCU UGU UGUCGUU GC AAC GU AGUC CUA AGGUA@LB@3'-UUU...CCGUU GA G AA AAA G CC A CGAAU...GCA-5'@LB@ | |@LB@ 77 32@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -31.8657 kcal/mol@LB@Unfolding Energy - mRNA 14.6029 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 134 -- 176@LB@Position - sRNA 33 -- 76@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 61 -- 67@LB@ |
175 |
0.008768 |
0.1747 |
b0658 |
ybeX |
-12.37 |
0.086971 |
210 -- 256 |
35 -- 75 |
putative ion transport |
|
_____________209_____________________________________________257\n_____________|_______________________________________________|\n5'-UUA...GCGAC___AAUU___________GACACGAUAAG__ACA__AA_________CUCCC...ACC-3'\n______________GAC____CACACAGUAGU___________CA___AG__GGGAUUUUU\n______________|||____|||||||:|:|___________||___||__|||||||::\n______________CUG____GUGUGUCGUUA___________GU___UC__CCCUAAAGG\n3'-UUU...CGUUU___AU_____________AGCAACAAA____GAG_____________UACGA...GCA-5'\n_____________|_______________________________________________|\n_____________76______________________________________________34\n |
249 -- 255 |
36 -- 42 |
-26.9454 kcal/mol |
9.77444 kcal/mol |
4.80541 kcal/mol |
209 257@LB@ | |@LB@5'-UUA...GCGAC AAUU GACACGAUAAG ACA AA CUCCC...ACC-3'@LB@ GAC CACACAGUAGU CA AG GGGAUUUUU@LB@ ||| |||||||:|:| || || |||||||::@LB@ CUG GUGUGUCGUUA GU UC CCCUAAAGG@LB@3'-UUU...CGUUU AU AGCAACAAA GAG UACGA...GCA-5'@LB@ | |@LB@ 76 34@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -26.9454 kcal/mol@LB@Unfolding Energy - mRNA 9.77444 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 210 -- 256@LB@Position - sRNA 35 -- 75@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 36 -- 42@LB@ |
125 |
0.005556 |
0.1564 |
b3384 |
trpS |
-12.26 |
0.091693 |
207 -- 244 |
40 -- 100 |
tryptophanyl-tRNA synthetase |
|
_____________206___________________________________________________________245\n_____________|_____________________________________________________________|\n5'-ACA...UGACU___________UUUUA__________________________________________U__AUUGA...AUG-3'\n______________AAGCCCAUCGU_____GUGG__________CGCACAGC____________C_CUCAGG_GA\n______________|||||||||||_____:|||__________|:||||||____________|_||||||_||\n______________UUCGGGUAGCA_____UACC__________GUGUGUCG____________G_GAGUCC_CU\n______3'-UUUUU___________CCCUC____CGUUUCUGAU________UUAAGCAACAAA_U______C__AAAGG...GCA-5'\n_____________|_____________________________________________________________|\n_____________101___________________________________________________________39\n |
228 -- 234 |
63 -- 69 |
-41.2838 kcal/mol |
11.4457 kcal/mol |
17.5818 kcal/mol |
206 245@LB@ | |@LB@5'-ACA...UGACU UUUUA U AUUGA...AUG-3'@LB@ AAGCCCAUCGU GUGG CGCACAGC C CUCAGG GA@LB@ ||||||||||| :||| |:|||||| | |||||| ||@LB@ UUCGGGUAGCA UACC GUGUGUCG G GAGUCC CU@LB@ 3'-UUUUU CCCUC CGUUUCUGAU UUAAGCAACAAA U C AAAGG...GCA-5'@LB@ | |@LB@ 101 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -41.2838 kcal/mol@LB@Unfolding Energy - mRNA 11.4457 kcal/mol@LB@Unfolding Energy - sRNA 17.5818 kcal/mol@LB@@LB@Position - mRNA 207 -- 244@LB@Position - sRNA 40 -- 100@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 63 -- 69@LB@ |
104 |
0.004609 |
0.1538 |
b3405 |
ompR |
-12.19 |
0.094658 |
154 -- 190 |
42 -- 77 |
response regulator in two-component regulatory system with EnvZ |
|
_____________153___________________________________191\n_____________|_____________________________________|\n5'-AAU...UUUUU____A_______UUA___A______CGAAC___U___AGUAC...GCG-3'\n______________AAGA_UACACGC___CAA_UUGUUG_____CUU_GGG\n______________||||_|||||:|___|||_|:||||_____||:_|||\n______________UUCU_AUGUGUG___GUU_AGCAAC_____GAG_CCC\n3'-UUU...CCCGU____G_______UC____A______AAAGU___U___CUAAA...GCA-5'\n_____________|_____________________________________|\n_____________78____________________________________41\n |
159 -- 165 |
66 -- 72 |
-25.6517 kcal/mol |
8.69679 kcal/mol |
4.7648 kcal/mol |
153 191@LB@ | |@LB@5'-AAU...UUUUU A UUA A CGAAC U AGUAC...GCG-3'@LB@ AAGA UACACGC CAA UUGUUG CUU GGG@LB@ |||| |||||:| ||| |:|||| ||: |||@LB@ UUCU AUGUGUG GUU AGCAAC GAG CCC@LB@3'-UUU...CCCGU G UC A AAAGU U CUAAA...GCA-5'@LB@ | |@LB@ 78 41@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -25.6517 kcal/mol@LB@Unfolding Energy - mRNA 8.69679 kcal/mol@LB@Unfolding Energy - sRNA 4.7648 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 42 -- 77@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 66 -- 72@LB@ |
110 |
0.004806 |
0.1538 |
b1429 |
tehA |
-12.16 |
0.096068 |
32 -- 62 |
44 -- 75 |
potassium-tellurite ethidium and proflavin transporter |
|
_____________31_________________________________63\n_____________|__________________________________|\n5'-AAU...UUCCU___A__UAAA_________C___UC_________ACGAU...UUU-3'\n______________GAU_AC____GGC___UCG_UGU__UUCACUUAG\n______________||:_||____:||___|||_|||__||||||:||\n______________CUG_UG____UCG___AGC_ACA__AAGUGAGUC\n3'-UUU...CGUUU___A__UGUG___UUA___A______________CCCUA...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________43\n |
56 -- 62 |
44 -- 50 |
-20.5577 kcal/mol |
4.26011 kcal/mol |
4.13839 kcal/mol |
31 63@LB@ | |@LB@5'-AAU...UUCCU A UAAA C UC ACGAU...UUU-3'@LB@ GAU AC GGC UCG UGU UUCACUUAG@LB@ ||: || :|| ||| ||| ||||||:||@LB@ CUG UG UCG AGC ACA AAGUGAGUC@LB@3'-UUU...CGUUU A UGUG UUA A CCCUA...GCA-5'@LB@ | |@LB@ 76 43@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -20.5577 kcal/mol@LB@Unfolding Energy - mRNA 4.26011 kcal/mol@LB@Unfolding Energy - sRNA 4.13839 kcal/mol@LB@@LB@Position - mRNA 32 -- 62@LB@Position - sRNA 44 -- 75@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 44 -- 50@LB@ |
87 |
0.003844 |
0.1538 |
b3124 |
garK |
-12.12 |
0.097757 |
2 -- 34 |
58 -- 88 |
glycerate kinase I |
|
_____________1_________________________________35\n_____________|_________________________________|\n__________5'-U_______AU_____C______A____A______AGGAA...AUG-3'\n______________GGAGAUG__GCAGG_ACUGCG_GCAG_UGGUUU\n______________|||||||__|||::_|||:|:_:|||_:::||:\n______________CCUCUAC__CGUUU_UGAUGU_UGUC_GUUAAG\n3'-UUU...AGCAC_______C______C______G___________CAACA...GCA-5'\n_____________|_________________________________|\n_____________89________________________________57\n |
2 -- 8 |
82 -- 88 |
-28.4892 kcal/mol |
6.08629 kcal/mol |
10.2803 kcal/mol |
1 35@LB@ | |@LB@ 5'-U AU C A A AGGAA...AUG-3'@LB@ GGAGAUG GCAGG ACUGCG GCAG UGGUUU@LB@ ||||||| |||:: |||:|: :||| :::||:@LB@ CCUCUAC CGUUU UGAUGU UGUC GUUAAG@LB@3'-UUU...AGCAC C C G CAACA...GCA-5'@LB@ | |@LB@ 89 57@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -28.4892 kcal/mol@LB@Unfolding Energy - mRNA 6.08629 kcal/mol@LB@Unfolding Energy - sRNA 10.2803 kcal/mol@LB@@LB@Position - mRNA 2 -- 34@LB@Position - sRNA 58 -- 88@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 82 -- 88@LB@ |
11 |
9.086e-05 |
0.0245 |
b3337 |
bfd |
-12.11 |
0.098410 |
247 -- 280 |
34 -- 76 |
bacterioferritin-associated ferredoxin |
|
_____________246_________________________________________281\n_____________|___________________________________________|\n5'-GCG...UCGUC___________________UCCCC___________________GCAAU...UUC-3'\n______________AGGCUGUGCGC__CAGUUU______UCACUCG______UUCCA\n______________||:||:::|:|__||:||:______||||||:______|||||\n______________UCUGAUGUGUG__GUUAAG______AGUGAGU______AAGGU\n3'-UUU...CCGUU___________UC______CAACAA_______CCCCUA_____ACGAA...GCA-5'\n_____________|___________________________________________|\n_____________77__________________________________________33\n |
269 -- 275 |
45 -- 51 |
-24.9474 kcal/mol |
8.02269 kcal/mol |
4.816 kcal/mol |
246 281@LB@ | |@LB@5'-GCG...UCGUC UCCCC GCAAU...UUC-3'@LB@ AGGCUGUGCGC CAGUUU UCACUCG UUCCA@LB@ ||:||:::|:| ||:||: ||||||: |||||@LB@ UCUGAUGUGUG GUUAAG AGUGAGU AAGGU@LB@3'-UUU...CCGUU UC CAACAA CCCCUA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.9474 kcal/mol@LB@Unfolding Energy - mRNA 8.02269 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 247 -- 280@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 45 -- 51@LB@ |
93 |
0.004161 |
0.1538 |
b4221 |
tamB |
-11.98 |
0.104509 |
154 -- 185 |
44 -- 78 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________153__________________________________186\n_____________|____________________________________|\n5'-ACC...CGGAU______GA____________ACA________A____UCUGG...AUC-3'\n______________AAAGAC___ACACGG__GUU____GUUUUAC_UCGG\n______________||||||___||||:|__:||____||||:||_||:|\n______________UUUCUG___UGUGUC__UAA____CAAAGUG_AGUC\n3'-UUU...ACCCG______AUG______GU___GCAA____________CCCUA...GCA-5'\n_____________|____________________________________|\n_____________79___________________________________43\n |
174 -- 180 |
48 -- 54 |
-22.2219 kcal/mol |
6.10136 kcal/mol |
4.13875 kcal/mol |
153 186@LB@ | |@LB@5'-ACC...CGGAU GA ACA A UCUGG...AUC-3'@LB@ AAAGAC ACACGG GUU GUUUUAC UCGG@LB@ |||||| ||||:| :|| ||||:|| ||:|@LB@ UUUCUG UGUGUC UAA CAAAGUG AGUC@LB@3'-UUU...ACCCG AUG GU GCAA CCCUA...GCA-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -22.2219 kcal/mol@LB@Unfolding Energy - mRNA 6.10136 kcal/mol@LB@Unfolding Energy - sRNA 4.13875 kcal/mol@LB@@LB@Position - mRNA 154 -- 185@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 48 -- 54@LB@ |
161 |
0.00773 |
0.1668 |
b0945 |
pyrD |
-11.84 |
0.111523 |
258 -- 300 |
33 -- 77 |
dihydro-orotate oxidase FMN-linked |
|
_____________257____________________________________________300\n_____________|______________________________________________|\n5'-UGU...CUCAU___U____UUUU________A__CC__A____A_______ACG____-3'\n______________GAG_UUAC____CAGCAAUU_CG__GU_UUAC_____GGA___CCGU\n______________:||_:|||____||||||||_||__||_|:||_____|||___||:|\n______________UUC_GAUG____GUCGUUAA_GC__CA_AGUG_____CCU___GGUA\n3'-UUU...CCCGU___U____UGU____________AA__A____AGUCC___AAA____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________78______________________________________________32\n |
271 -- 277 |
59 -- 65 |
-22.2972 kcal/mol |
5.63827 kcal/mol |
4.81602 kcal/mol |
257 300@LB@ | |@LB@5'-UGU...CUCAU U UUUU A CC A A ACG -3'@LB@ GAG UUAC CAGCAAUU CG GU UUAC GGA CCGU@LB@ :|| :||| |||||||| || || |:|| ||| ||:|@LB@ UUC GAUG GUCGUUAA GC CA AGUG CCU GGUA@LB@3'-UUU...CCCGU U UGU AA A AGUCC AAA CGAAU...GCA-5'@LB@ | |@LB@ 78 32@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -22.2972 kcal/mol@LB@Unfolding Energy - mRNA 5.63827 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 33 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 59 -- 65@LB@ |
26 |
0.0002514 |
0.03403 |
b4551 |
yheV |
-11.83 |
0.112444 |
191 -- 229 |
42 -- 77 |
DUF2387 family putative metal-binding protein |
|
_____________190_____________________________________230\n_____________|_______________________________________|\n5'-AUC...GAGUA____G__A_G________C__AAAAC________GC___CGCAA...UUG-3'\n______________GAGG_UA_A_AUGGCAAU_CG_____GUUUUAUU__GGG\n______________:||:_||_|_|::|||||_||_____||||:|:|__|||\n______________UUCU_AU_U_UGUCGUUA_GC_____CAAAGUGA__CCC\n3'-UUU...CCCGU____G__G_G________A__AA___________GU___CUAAA...GCA-5'\n_____________|_______________________________________|\n_____________78______________________________________41\n |
217 -- 223 |
48 -- 54 |
-24.6454 kcal/mol |
8.05545 kcal/mol |
4.7648 kcal/mol |
190 230@LB@ | |@LB@5'-AUC...GAGUA G A G C AAAAC GC CGCAA...UUG-3'@LB@ GAGG UA A AUGGCAAU CG GUUUUAUU GGG@LB@ :||: || | |::||||| || ||||:|:| |||@LB@ UUCU AU U UGUCGUUA GC CAAAGUGA CCC@LB@3'-UUU...CCCGU G G G A AA GU CUAAA...GCA-5'@LB@ | |@LB@ 78 41@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -24.6454 kcal/mol@LB@Unfolding Energy - mRNA 8.05545 kcal/mol@LB@Unfolding Energy - sRNA 4.7648 kcal/mol@LB@@LB@Position - mRNA 191 -- 229@LB@Position - sRNA 42 -- 77@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 48 -- 54@LB@ |
132 |
0.005915 |
0.1577 |
b3356 |
yhfA |
-11.83 |
0.112173 |
273 -- 293 |
39 -- 71 |
OsmC family protein |
|
_____________272_______________________________294\n_____________|_________________________________|\n5'-CUG...UUUUA___G_________________________C___AAAGCAC-3'\n______________AUG_ACGGCA____________ACUCAGG_GAU\n______________|::_||:|||____________|||||||_|||\n______________UGU_UGUCGU____________UGAGUCC_CUA\n3'-UUU...UCUGA___G______UAAGCAACAAAG_______C___AAGGU...GCA-5'\n_____________|_________________________________|\n_____________72________________________________38\n |
283 -- 289 |
43 -- 49 |
-20.9729 kcal/mol |
4.393 kcal/mol |
4.74947 kcal/mol |
272 294@LB@ | |@LB@5'-CUG...UUUUA G C AAAGCAC-3'@LB@ AUG ACGGCA ACUCAGG GAU@LB@ |:: ||:||| ||||||| |||@LB@ UGU UGUCGU UGAGUCC CUA@LB@3'-UUU...UCUGA G UAAGCAACAAAG C AAGGU...GCA-5'@LB@ | |@LB@ 72 38@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -20.9729 kcal/mol@LB@Unfolding Energy - mRNA 4.393 kcal/mol@LB@Unfolding Energy - sRNA 4.74947 kcal/mol@LB@@LB@Position - mRNA 273 -- 293@LB@Position - sRNA 39 -- 71@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 43 -- 49@LB@ |
136 |
0.006258 |
0.1605 |
b0219 |
yafV |
-11.82 |
0.112632 |
212 -- 233 |
61 -- 78 |
putative NAD(P)-binding C-N hydrolase family amidase |
|
_____________211____________________234\n_____________|______________________|\n5'-GUC...GGUUU___________UUUU_______CCACU...CCG-3'\n______________GAAGAUUACGC____GCAGCAA\n______________:||||:|||:|____:||||||\n______________UUUCUGAUGUG____UGUCGUU\n3'-UUU...ACCCG______________________AAGCA...GCA-5'\n_____________|______________________|\n_____________79_____________________60\n |
227 -- 233 |
61 -- 67 |
-20.0989 kcal/mol |
5.01896 kcal/mol |
3.25783 kcal/mol |
211 234@LB@ | |@LB@5'-GUC...GGUUU UUUU CCACU...CCG-3'@LB@ GAAGAUUACGC GCAGCAA@LB@ :||||:|||:| :||||||@LB@ UUUCUGAUGUG UGUCGUU@LB@3'-UUU...ACCCG AAGCA...GCA-5'@LB@ | |@LB@ 79 60@LB@@LB@@LB@Energy -11.82 kcal/mol@LB@Hybridization Energy -20.0989 kcal/mol@LB@Unfolding Energy - mRNA 5.01896 kcal/mol@LB@Unfolding Energy - sRNA 3.25783 kcal/mol@LB@@LB@Position - mRNA 212 -- 233@LB@Position - sRNA 61 -- 78@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 61 -- 67@LB@ |
88 |
0.003962 |
0.1538 |
b3084 |
rlmG |
-11.78 |
0.115170 |
185 -- 197 |
40 -- 51 |
23S rRNA m(2)G1835 methyltransferase SAM-dependent |
|
_____________184___________198\n_____________|_____________|\n5'-UGU...UUUUA_________A___CCGAU...AAU-3'\n______________UCAUUCAGG_GGG\n______________|||:|||||_||:\n______________AGUGAGUCC_CCU\n3'-UUU...AACAA_____________AAAGG...GCA-5'\n_____________|_____________|\n_____________52____________39\n |
187 -- 193 |
43 -- 49 |
-16.9089 kcal/mol |
3.37488 kcal/mol |
1.76028 kcal/mol |
184 198@LB@ | |@LB@5'-UGU...UUUUA A CCGAU...AAU-3'@LB@ UCAUUCAGG GGG@LB@ |||:||||| ||:@LB@ AGUGAGUCC CCU@LB@3'-UUU...AACAA AAAGG...GCA-5'@LB@ | |@LB@ 52 39@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -16.9089 kcal/mol@LB@Unfolding Energy - mRNA 3.37488 kcal/mol@LB@Unfolding Energy - sRNA 1.76028 kcal/mol@LB@@LB@Position - mRNA 185 -- 197@LB@Position - sRNA 40 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |
183 |
0.009087 |
0.1747 |
b3965 |
trmA |
-11.75 |
0.116675 |
18 -- 52 |
35 -- 74 |
tRNA m(5)U54 methyltransferase SAM-dependent; tmRNA m(5)U341 methyltransferase |
|
_____________17____________________________________________53\n_____________|_____________________________________________|\n5'-UCG...UUACC________U____UCCA_________________________C__UAUUA...UUC-3'\n______________GCUGCGCG_CAGC____GAUUCG______CACU____GGAUU_CC\n______________:||:|:|:_||||____:|||||______||||____|||||_||\n______________UGAUGUGU_GUCG____UUAAGC______GUGA____CCUAA_GG\n3'-UUU...GUUUC_______________________AACAAA____GUCC_____A__UACGA...GCA-5'\n_____________|_____________________________________________|\n_____________75____________________________________________34\n |
18 -- 24 |
68 -- 74 |
-28.5766 kcal/mol |
12.0258 kcal/mol |
4.80541 kcal/mol |
17 53@LB@ | |@LB@5'-UCG...UUACC U UCCA C UAUUA...UUC-3'@LB@ GCUGCGCG CAGC GAUUCG CACU GGAUU CC@LB@ :||:|:|: |||| :||||| |||| ||||| ||@LB@ UGAUGUGU GUCG UUAAGC GUGA CCUAA GG@LB@3'-UUU...GUUUC AACAAA GUCC A UACGA...GCA-5'@LB@ | |@LB@ 75 34@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -28.5766 kcal/mol@LB@Unfolding Energy - mRNA 12.0258 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 18 -- 52@LB@Position - sRNA 35 -- 74@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 68 -- 74@LB@ |
60 |
0.002324 |
0.1363 |
b0881 |
clpS |
-11.74 |
0.117068 |
9 -- 15 |
40 -- 46 |
regulatory protein for ClpA substrate specificity |
|
_____________8_______16\n_____________|_______|\n___5'-GCAUUUGA_______CAAGG...UCA-3'\n______________CAGGGGA\n______________|||||||\n______________GUCCCCU\n3'-UUU...AGUGA_______AAAGG...GCA-5'\n_____________|_______|\n_____________47______39\n |
9 -- 15 |
40 -- 46 |
-13.2936 kcal/mol |
0.199257 kcal/mol |
1.35582 kcal/mol |
8 16@LB@ | |@LB@ 5'-GCAUUUGA CAAGG...UCA-3'@LB@ CAGGGGA@LB@ |||||||@LB@ GUCCCCU@LB@3'-UUU...AGUGA AAAGG...GCA-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -13.2936 kcal/mol@LB@Unfolding Energy - mRNA 0.199257 kcal/mol@LB@Unfolding Energy - sRNA 1.35582 kcal/mol@LB@@LB@Position - mRNA 9 -- 15@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 40 -- 46@LB@ |
95 |
0.004386 |
0.1538 |
b1083 |
flgL |
-11.72 |
0.118200 |
146 -- 194 |
40 -- 76 |
flagellar hook-filament junction protein |
|
_____________145_________________________________________________195\n_____________|___________________________________________________|\n5'-UUG...UCUGC____G___A______________AUGCGCUGAUUAACA______A______GAUAA...GUA-3'\n______________AGAC_GCA_AC_GCGAUUU_UUG_______________UUCGCU_AGGGGA\n______________||||_:||_||_||:|||:_|||_______________|||:||_||||||\n______________UCUG_UGU_UG_CGUUAAG_AAC_______________AAGUGA_UCCCCU\n3'-UUU...CCGUU____A___G__U_______C___A____________________G______AAAGG...GCA-5'\n_____________|___________________________________________________|\n_____________77__________________________________________________39\n |
157 -- 163 |
58 -- 64 |
-28.9648 kcal/mol |
12.4692 kcal/mol |
4.77843 kcal/mol |
145 195@LB@ | |@LB@5'-UUG...UCUGC G A AUGCGCUGAUUAACA A GAUAA...GUA-3'@LB@ AGAC GCA AC GCGAUUU UUG UUCGCU AGGGGA@LB@ |||| :|| || ||:|||: ||| |||:|| ||||||@LB@ UCUG UGU UG CGUUAAG AAC AAGUGA UCCCCU@LB@3'-UUU...CCGUU A G U C A G AAAGG...GCA-5'@LB@ | |@LB@ 77 39@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -28.9648 kcal/mol@LB@Unfolding Energy - mRNA 12.4692 kcal/mol@LB@Unfolding Energy - sRNA 4.77843 kcal/mol@LB@@LB@Position - mRNA 146 -- 194@LB@Position - sRNA 40 -- 76@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 58 -- 64@LB@ |
139 |
0.006425 |
0.1605 |
b0924 |
mukB |
-11.72 |
0.118276 |
203 -- 227 |
45 -- 75 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________202_____________________________228\n_____________|_______________________________|\n5'-UGG...AUAAU_____A_________A_______________CUGAC...CUG-3'\n______________GAUUG_ACGCGGUAA_______UUUCGCUCA\n______________||:|:_||:|:|:||_______||||:||||\n______________CUGAU_UGUGUCGUU_______AAAGUGAGU\n3'-UUU...CGUUU_____G_________AAGCAAC_________CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
221 -- 227 |
45 -- 51 |
-22.3255 kcal/mol |
6.8688 kcal/mol |
3.74078 kcal/mol |
202 228@LB@ | |@LB@5'-UGG...AUAAU A A CUGAC...CUG-3'@LB@ GAUUG ACGCGGUAA UUUCGCUCA@LB@ ||:|: ||:|:|:|| ||||:||||@LB@ CUGAU UGUGUCGUU AAAGUGAGU@LB@3'-UUU...CGUUU G AAGCAAC CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -22.3255 kcal/mol@LB@Unfolding Energy - mRNA 6.8688 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 203 -- 227@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 45 -- 51@LB@ |
74 |
0.003066 |
0.1452 |
b0467 |
priC |
-11.71 |
0.118543 |
157 -- 193 |
43 -- 75 |
primosomal replication protein N'' |
|
_____________156___________________________________194\n_____________|_____________________________________|\n5'-GGG...AGAGU______UUUA_____A_____AUCAU_______G___UCUUA...GUU-3'\n______________GGCUAC____GCAUA_CAAUU_____UUUCAUU_AGG\n______________|:||||____:||:|_|||||_____|||||:|_|||\n______________CUGAUG____UGUGU_GUUAA_____AAAGUGA_UCC\n3'-UUU...CGUUU_______________C_____GCAAC_______G___CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________76____________________________________42\n |
183 -- 189 |
47 -- 53 |
-24.815 kcal/mol |
8.75149 kcal/mol |
4.35266 kcal/mol |
156 194@LB@ | |@LB@5'-GGG...AGAGU UUUA A AUCAU G UCUUA...GUU-3'@LB@ GGCUAC GCAUA CAAUU UUUCAUU AGG@LB@ |:|||| :||:| ||||| |||||:| |||@LB@ CUGAUG UGUGU GUUAA AAAGUGA UCC@LB@3'-UUU...CGUUU C GCAAC G CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -24.815 kcal/mol@LB@Unfolding Energy - mRNA 8.75149 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 157 -- 193@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 47 -- 53@LB@ |
67 |
0.002719 |
0.1417 |
b3454 |
livF |
-11.67 |
0.120634 |
106 -- 122 |
40 -- 58 |
branched-chain amino acid ABC transporter ATPase |
|
_____________105_________________123\n_____________|___________________|\n5'-AGA...AUUUA___GG_____A________CGCCG...UUG-3'\n______________CGU____UCA_UCAGGGGA\n______________|||____|||_||||||||\n______________GCA____AGU_AGUCCCCU\n3'-UUU...GUUAA___ACAA___G________AAAGG...GCA-5'\n_____________|___________________|\n_____________59__________________39\n |
116 -- 122 |
40 -- 46 |
-19.8465 kcal/mol |
5.75116 kcal/mol |
2.42241 kcal/mol |
105 123@LB@ | |@LB@5'-AGA...AUUUA GG A CGCCG...UUG-3'@LB@ CGU UCA UCAGGGGA@LB@ ||| ||| ||||||||@LB@ GCA AGU AGUCCCCU@LB@3'-UUU...GUUAA ACAA G AAAGG...GCA-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -19.8465 kcal/mol@LB@Unfolding Energy - mRNA 5.75116 kcal/mol@LB@Unfolding Energy - sRNA 2.42241 kcal/mol@LB@@LB@Position - mRNA 106 -- 122@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 40 -- 46@LB@ |
146 |
0.006661 |
0.1605 |
b4479 |
dgoR |
-11.67 |
0.120911 |
94 -- 106 |
61 -- 74 |
D-galactonate catabolism operon transcriptional repressor |
|
_____________93_____________107\n_____________|______________|\n5'-UUU...ACAUU______________ACGCG...AAC-3'\n______________AC_ACGCACGGCAA\n______________||_||:|||:||||\n______________UG_UGUGUGUCGUU\n3'-UUU...GUUUC__A___________AAGCA...GCA-5'\n_____________|______________|\n_____________75_____________60\n |
100 -- 106 |
61 -- 67 |
-16.8512 kcal/mol |
1.93692 kcal/mol |
3.24589 kcal/mol |
93 107@LB@ | |@LB@5'-UUU...ACAUU ACGCG...AAC-3'@LB@ AC ACGCACGGCAA@LB@ || ||:|||:||||@LB@ UG UGUGUGUCGUU@LB@3'-UUU...GUUUC A AAGCA...GCA-5'@LB@ | |@LB@ 75 60@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -16.8512 kcal/mol@LB@Unfolding Energy - mRNA 1.93692 kcal/mol@LB@Unfolding Energy - sRNA 3.24589 kcal/mol@LB@@LB@Position - mRNA 94 -- 106@LB@Position - sRNA 61 -- 74@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 61 -- 67@LB@ |
114 |
0.005004 |
0.1545 |
b0025 |
ribF |
-11.63 |
0.123109 |
210 -- 237 |
43 -- 71 |
bifunctional riboflavin kinase/FAD synthetase |
|
_____________209___________________________238\n_____________|_____________________________|\n5'-UGG...AGCUG__________UACAUAAUC____GC____CCCCG...GCG-3'\n______________AUACGCGGCA__________UCA__CAGG\n______________|:||:|:|||__________|||__||||\n______________UGUGUGUCGU__________AGU__GUCC\n3'-UUU...UCUGA__________UAAGCAACAA___GA____CCUAA...GCA-5'\n_____________|_____________________________|\n_____________72____________________________42\n |
213 -- 219 |
62 -- 68 |
-21.1915 kcal/mol |
5.23887 kcal/mol |
4.32409 kcal/mol |
209 238@LB@ | |@LB@5'-UGG...AGCUG UACAUAAUC GC CCCCG...GCG-3'@LB@ AUACGCGGCA UCA CAGG@LB@ |:||:|:||| ||| ||||@LB@ UGUGUGUCGU AGU GUCC@LB@3'-UUU...UCUGA UAAGCAACAA GA CCUAA...GCA-5'@LB@ | |@LB@ 72 42@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -21.1915 kcal/mol@LB@Unfolding Energy - mRNA 5.23887 kcal/mol@LB@Unfolding Energy - sRNA 4.32409 kcal/mol@LB@@LB@Position - mRNA 210 -- 237@LB@Position - sRNA 43 -- 71@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 62 -- 68@LB@ |
179 |
0.009001 |
0.1747 |
b2725 |
hycA |
-11.58 |
0.125812 |
239 -- 264 |
43 -- 70 |
regulator of the transcriptional regulator FhlA |
|
_____________238_____________________________265\n_____________|_______________________________|\n5'-UUA...UACAU__________CA____________CUA____ACCAG...AGG-3'\n______________CGCACAGCGG__UCG_____UCGC___CAGG\n______________|:||||||::__|||_____||:|___||||\n______________GUGUGUCGUU__AGC_____AGUG___GUCC\n3'-UUU...CUGAU__________A____AACAA____A______CCUAA...GCA-5'\n_____________|_______________________________|\n_____________71______________________________42\n |
242 -- 248 |
61 -- 67 |
-23.0547 kcal/mol |
7.15003 kcal/mol |
4.32399 kcal/mol |
238 265@LB@ | |@LB@5'-UUA...UACAU CA CUA ACCAG...AGG-3'@LB@ CGCACAGCGG UCG UCGC CAGG@LB@ |:||||||:: ||| ||:| ||||@LB@ GUGUGUCGUU AGC AGUG GUCC@LB@3'-UUU...CUGAU A AACAA A CCUAA...GCA-5'@LB@ | |@LB@ 71 42@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -23.0547 kcal/mol@LB@Unfolding Energy - mRNA 7.15003 kcal/mol@LB@Unfolding Energy - sRNA 4.32399 kcal/mol@LB@@LB@Position - mRNA 239 -- 264@LB@Position - sRNA 43 -- 70@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 61 -- 67@LB@ |
52 |
0.001789 |
0.121 |
b1799 |
dmlR |
-11.56 |
0.127346 |
72 -- 108 |
34 -- 68 |
transcriptional activator of dmlA |
b3060 |
_____________71_______________________________________109\n_____________|________________________________________|\n5'-CGC...GGGAU_________ACGCA_______________UU_____C___CUUCC...CGG-3'\n______________CGCAGCAAU_____UCGU__UUUCA_UCA__GGGUU_UCA\n______________|:|||||||_____||||__|||||_|||__||:||_:||\n______________GUGUCGUUA_____AGCA__AAAGU_AGU__CCUAA_GGU\n3'-UUU...GAUGU__________________AC_____G___CC_____A___ACGAA...GCA-5'\n_____________|________________________________________|\n_____________69_______________________________________33\n |
74 -- 80 |
60 -- 66 |
-24.8584 kcal/mol |
8.52016 kcal/mol |
4.78423 kcal/mol |
71 109@LB@ | |@LB@5'-CGC...GGGAU ACGCA UU C CUUCC...CGG-3'@LB@ CGCAGCAAU UCGU UUUCA UCA GGGUU UCA@LB@ |:||||||| |||| ||||| ||| ||:|| :||@LB@ GUGUCGUUA AGCA AAAGU AGU CCUAA GGU@LB@3'-UUU...GAUGU AC G CC A ACGAA...GCA-5'@LB@ | |@LB@ 69 33@LB@@LB@@LB@Energy -11.56 kcal/mol@LB@Hybridization Energy -24.8584 kcal/mol@LB@Unfolding Energy - mRNA 8.52016 kcal/mol@LB@Unfolding Energy - sRNA 4.78423 kcal/mol@LB@@LB@Position - mRNA 72 -- 108@LB@Position - sRNA 34 -- 68@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 60 -- 66@LB@ |
8 |
3.984e-05 |
0.01752 |
b2752 |
cysD |
-11.53 |
0.128779 |
103 -- 132 |
45 -- 74 |
sulfate adenylyltransferase subunit 2 |
|
_____________102____________________________133\n_____________|______________________________|\n5'-GCC...AAGGA_____U___UC_____G__AA_________UUCUC...UCU-3'\n______________ACUAC_CAU__UAAUU_GU__UUUCAUUCG\n______________|||||_||:__:||||_||__|||||:||:\n______________UGAUG_GUG__GUUAA_CA__AAAGUGAGU\n3'-UUU...GUUUC_____U___UC_____G__AC_________CCCCU...GCA-5'\n_____________|______________________________|\n_____________75_____________________________44\n |
126 -- 132 |
45 -- 51 |
-20.8412 kcal/mol |
5.57115 kcal/mol |
3.74056 kcal/mol |
102 133@LB@ | |@LB@5'-GCC...AAGGA U UC G AA UUCUC...UCU-3'@LB@ ACUAC CAU UAAUU GU UUUCAUUCG@LB@ ||||| ||: :|||| || |||||:||:@LB@ UGAUG GUG GUUAA CA AAAGUGAGU@LB@3'-UUU...GUUUC U UC G AC CCCCU...GCA-5'@LB@ | |@LB@ 75 44@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8412 kcal/mol@LB@Unfolding Energy - mRNA 5.57115 kcal/mol@LB@Unfolding Energy - sRNA 3.74056 kcal/mol@LB@@LB@Position - mRNA 103 -- 132@LB@Position - sRNA 45 -- 74@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 45 -- 51@LB@ |
65 |
0.002677 |
0.1417 |
b0584 |
fepA |
-11.47 |
0.132508 |
209 -- 249 |
37 -- 78 |
ferrienterobactin outer membrane transporter |
|
_____________208___________________________________________250\n_____________|_____________________________________________|\n5'-GAA...AACAA___________U_CCU___C________G____A__U________AUGGG...ACG-3'\n______________GAAGAUU_CAU_C___GGC___UUGUUG__UCA_UC_GGGGAUUU\n______________:||||:|_||:_|___:||___|:||||__|||_||_||||||||\n______________UUUCUGA_GUG_G___UCG___AGCAAC__AGU_AG_CCCCUAAA\n3'-UUU...ACCCG_______U___U_______UUA______AA___G__U________GGUAC...GCA-5'\n_____________|_____________________________________________|\n_____________79____________________________________________36\n |
243 -- 249 |
37 -- 43 |
-30.6633 kcal/mol |
14.4176 kcal/mol |
4.77973 kcal/mol |
208 250@LB@ | |@LB@5'-GAA...AACAA U CCU C G A U AUGGG...ACG-3'@LB@ GAAGAUU CAU C GGC UUGUUG UCA UC GGGGAUUU@LB@ :||||:| ||: | :|| |:|||| ||| || ||||||||@LB@ UUUCUGA GUG G UCG AGCAAC AGU AG CCCCUAAA@LB@3'-UUU...ACCCG U U UUA AA G U GGUAC...GCA-5'@LB@ | |@LB@ 79 36@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -30.6633 kcal/mol@LB@Unfolding Energy - mRNA 14.4176 kcal/mol@LB@Unfolding Energy - sRNA 4.77973 kcal/mol@LB@@LB@Position - mRNA 209 -- 249@LB@Position - sRNA 37 -- 78@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 37 -- 43@LB@ |
35 |
0.0005607 |
0.05638 |
b1434 |
ydcN |
-11.45 |
0.133710 |
242 -- 253 |
62 -- 74 |
putative DNA-binding transcriptional regulator |
b1508 b1299 |
_____________241___________254\n_____________|_____________|\n5'-CGG...AAACA_____________GCGCG...CUA-3'\n______________ACUACGC_CAGCA\n______________|||||:|_|||||\n______________UGAUGUG_GUCGU\n3'-UUU...GUUUC_______U_____UAAGC...GCA-5'\n_____________|_____________|\n_____________75____________61\n |
242 -- 248 |
68 -- 74 |
-17.054 kcal/mol |
2.36402 kcal/mol |
3.24359 kcal/mol |
241 254@LB@ | |@LB@5'-CGG...AAACA GCGCG...CUA-3'@LB@ ACUACGC CAGCA@LB@ |||||:| |||||@LB@ UGAUGUG GUCGU@LB@3'-UUU...GUUUC U UAAGC...GCA-5'@LB@ | |@LB@ 75 61@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -17.054 kcal/mol@LB@Unfolding Energy - mRNA 2.36402 kcal/mol@LB@Unfolding Energy - sRNA 3.24359 kcal/mol@LB@@LB@Position - mRNA 242 -- 253@LB@Position - sRNA 62 -- 74@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 68 -- 74@LB@ |
42 |
0.0009586 |
0.08031 |
b3747 |
kup |
-11.44 |
0.134185 |
159 -- 185 |
49 -- 77 |
potassium transporter |
|
_____________158___________________________186\n_____________|_____________________________|\n5'-AAA...GCCAA_______A________U___AUA______ACGAA...GUG-3'\n______________GGGACUA_GCACA_CA_UUC____UUUCA\n______________::|||||_:||||_||_|||____|||||\n______________UUCUGAU_UGUGU_GU_AAG____AAAGU\n3'-UUU...CCCGU_______G_____C__U___CAAC_____GAGUC...GCA-5'\n_____________|_____________________________|\n_____________78____________________________48\n |
159 -- 165 |
71 -- 77 |
-19.3471 kcal/mol |
4.22429 kcal/mol |
3.68465 kcal/mol |
158 186@LB@ | |@LB@5'-AAA...GCCAA A U AUA ACGAA...GUG-3'@LB@ GGGACUA GCACA CA UUC UUUCA@LB@ ::||||| :|||| || ||| |||||@LB@ UUCUGAU UGUGU GU AAG AAAGU@LB@3'-UUU...CCCGU G C U CAAC GAGUC...GCA-5'@LB@ | |@LB@ 78 48@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -19.3471 kcal/mol@LB@Unfolding Energy - mRNA 4.22429 kcal/mol@LB@Unfolding Energy - sRNA 3.68465 kcal/mol@LB@@LB@Position - mRNA 159 -- 185@LB@Position - sRNA 49 -- 77@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 71 -- 77@LB@ |
53 |
0.001859 |
0.1218 |
b0529 |
folD |
-11.41 |
0.136116 |
200 -- 226 |
61 -- 85 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________199_________________________227\n_____________|___________________________|\n5'-CAA...UCUCU_____CA___________UG_______AACGA...CAC-3'\n______________GAUGG__GCAAAGAUUAU__ACGGUAA\n______________|||||__|||||||:||:__||:|:||\n______________CUACC__CGUUUCUGAUG__UGUCGUU\n3'-UUU...ACCCU__________________UG_______AAGCA...GCA-5'\n_____________|___________________________|\n_____________86__________________________60\n |
220 -- 226 |
61 -- 67 |
-27.4215 kcal/mol |
5.77154 kcal/mol |
10.2439 kcal/mol |
199 227@LB@ | |@LB@5'-CAA...UCUCU CA UG AACGA...CAC-3'@LB@ GAUGG GCAAAGAUUAU ACGGUAA@LB@ ||||| |||||||:||: ||:|:||@LB@ CUACC CGUUUCUGAUG UGUCGUU@LB@3'-UUU...ACCCU UG AAGCA...GCA-5'@LB@ | |@LB@ 86 60@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -27.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.77154 kcal/mol@LB@Unfolding Energy - sRNA 10.2439 kcal/mol@LB@@LB@Position - mRNA 200 -- 226@LB@Position - sRNA 61 -- 85@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 61 -- 67@LB@ |
176 |
0.008803 |
0.1747 |
b1242 |
ychE |
-11.39 |
0.137124 |
41 -- 64 |
45 -- 75 |
UPF0056 family inner membrane protein |
|
_____________40______________________________65\n_____________|_______________________________|\n5'-CAU...UUGGU____________________________A__ACUAG...GCA-3'\n______________GGCUACAU_UAGCA______UGUUUUGC_CA\n______________|:|||||:_:||||______|||||::|_||\n______________CUGAUGUG_GUCGU______ACAAAGUG_GU\n3'-UUU...CGUUU________U_____UAAGCA________A__CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
55 -- 61 |
48 -- 54 |
-19.9041 kcal/mol |
4.77357 kcal/mol |
3.74078 kcal/mol |
40 65@LB@ | |@LB@5'-CAU...UUGGU A ACUAG...GCA-3'@LB@ GGCUACAU UAGCA UGUUUUGC CA@LB@ |:|||||: :|||| |||||::| ||@LB@ CUGAUGUG GUCGU ACAAAGUG GU@LB@3'-UUU...CGUUU U UAAGCA A CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -19.9041 kcal/mol@LB@Unfolding Energy - mRNA 4.77357 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 41 -- 64@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 48 -- 54@LB@ |
182 |
0.009082 |
0.1747 |
b3998 |
nfi |
-11.38 |
0.137700 |
53 -- 76 |
45 -- 75 |
endonuclease V; deoxyinosine 3' endonuclease |
|
_____________52______________________________77\n_____________|_______________________________|\n5'-UGG...GUAGC________UU_________________G___CGGCG...GAG-3'\n______________GACUAUAC___GCAG______GUUUCG_UCA\n______________|||||:||___|||:______|||||:_|||\n______________CUGAUGUG___CGUU______CAAAGU_AGU\n3'-UUU...CGUUU________UGU____AAGCAA______G___CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
54 -- 60 |
68 -- 74 |
-21.6188 kcal/mol |
6.49773 kcal/mol |
3.74078 kcal/mol |
52 77@LB@ | |@LB@5'-UGG...GUAGC UU G CGGCG...GAG-3'@LB@ GACUAUAC GCAG GUUUCG UCA@LB@ |||||:|| |||: |||||: |||@LB@ CUGAUGUG CGUU CAAAGU AGU@LB@3'-UUU...CGUUU UGU AAGCAA G CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -11.38 kcal/mol@LB@Hybridization Energy -21.6188 kcal/mol@LB@Unfolding Energy - mRNA 6.49773 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 53 -- 76@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 68 -- 74@LB@ |
59 |
0.002304 |
0.1363 |
b2508 |
guaB |
-11.36 |
0.139274 |
1 -- 26 |
38 -- 71 |
IMP dehydrogenase |
|
______________1__________________________________27\n______________|__________________________________|\n___________5'-__UA_______AA____________G_________GAGAA...AGC-3'\n______________AC__ACGGUAA___________AUU_CAGGGGAUU\n______________||__||:|:||___________|:|_|||||||||\n______________UG__UGUCGUU___________UGA_GUCCCCUAA\n3'-UUU...UCUGA__UG_______AAGCAACAAAG_____________AGGUA...GCA-5'\n_____________|___________________________________|\n_____________72__________________________________37\n |
20 -- 26 |
38 -- 44 |
-21.1303 kcal/mol |
5.02575 kcal/mol |
4.74986 kcal/mol |
1 27@LB@ | |@LB@ 5'- UA AA G GAGAA...AGC-3'@LB@ AC ACGGUAA AUU CAGGGGAUU@LB@ || ||:|:|| |:| |||||||||@LB@ UG UGUCGUU UGA GUCCCCUAA@LB@3'-UUU...UCUGA UG AAGCAACAAAG AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -21.1303 kcal/mol@LB@Unfolding Energy - mRNA 5.02575 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 38 -- 44@LB@ |
63 |
0.002639 |
0.1417 |
b2751 |
cysN |
-11.35 |
0.139541 |
181 -- 198 |
34 -- 49 |
sulfate adenylyltransferase subunit 1 |
|
_____________180________________199\n_____________|__________________|\n5'-AGU...AAAAA__G_______U_______AGAUG...GUG-3'\n______________AC_UCAGGGG_AUUUUUA\n______________||_|||||||_||||::|\n______________UG_AGUCCCC_UAAAGGU\n3'-UUU...CAAAG__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________50_________________33\n |
184 -- 190 |
41 -- 47 |
-17.8149 kcal/mol |
4.64155 kcal/mol |
1.82276 kcal/mol |
180 199@LB@ | |@LB@5'-AGU...AAAAA G U AGAUG...GUG-3'@LB@ AC UCAGGGG AUUUUUA@LB@ || ||||||| ||||::|@LB@ UG AGUCCCC UAAAGGU@LB@3'-UUU...CAAAG ACGAA...GCA-5'@LB@ | |@LB@ 50 33@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -17.8149 kcal/mol@LB@Unfolding Energy - mRNA 4.64155 kcal/mol@LB@Unfolding Energy - sRNA 1.82276 kcal/mol@LB@@LB@Position - mRNA 181 -- 198@LB@Position - sRNA 34 -- 49@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 41 -- 47@LB@ |
62 |
0.002558 |
0.1417 |
b3579 |
yiaO |
-11.31 |
0.142375 |
245 -- 258 |
62 -- 75 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________244____________259\n_____________|______________|\n5'-ACU...GGCCU________U_____CAUCU...AAA-3'\n______________GGCUGCAU_CAGCA\n______________|:||:||:_|||||\n______________CUGAUGUG_GUCGU\n3'-UUU...CGUUU________U_____UAAGC...GCA-5'\n_____________|______________|\n_____________76_____________61\n |
246 -- 252 |
68 -- 74 |
-19.3904 kcal/mol |
4.83304 kcal/mol |
3.25167 kcal/mol |
244 259@LB@ | |@LB@5'-ACU...GGCCU U CAUCU...AAA-3'@LB@ GGCUGCAU CAGCA@LB@ |:||:||: |||||@LB@ CUGAUGUG GUCGU@LB@3'-UUU...CGUUU U UAAGC...GCA-5'@LB@ | |@LB@ 76 61@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -19.3904 kcal/mol@LB@Unfolding Energy - mRNA 4.83304 kcal/mol@LB@Unfolding Energy - sRNA 3.25167 kcal/mol@LB@@LB@Position - mRNA 245 -- 258@LB@Position - sRNA 62 -- 75@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 68 -- 74@LB@ |
71 |
0.002886 |
0.1417 |
b2431 |
yfeX |
-11.26 |
0.145044 |
235 -- 277 |
40 -- 74 |
porphyrinogen oxidase cytoplasmic |
|
_____________234_________________________________________278\n_____________|___________________________________________|\n5'-AUU...AGAAC____C______________GAUCGAA__CAACGUGAA______AGUUG...CCA-3'\n______________AUUG_CGCGCGGCGAUUUG_______GC_________AGGGGA\n______________|:|:_|:|:|:||:|||:|_______:|_________||||||\n______________UGAU_GUGUGUCGUUAAGC_______UG_________UCCCCU\n3'-UUU...GUUUC___________________AACAAAG__AG_____________AAAGG...GCA-5'\n_____________|___________________________________________|\n_____________75__________________________________________39\n |
246 -- 252 |
58 -- 64 |
-30.0675 kcal/mol |
14.0273 kcal/mol |
4.77707 kcal/mol |
234 278@LB@ | |@LB@5'-AUU...AGAAC C GAUCGAA CAACGUGAA AGUUG...CCA-3'@LB@ AUUG CGCGCGGCGAUUUG GC AGGGGA@LB@ |:|: |:|:|:||:|||:| :| ||||||@LB@ UGAU GUGUGUCGUUAAGC UG UCCCCU@LB@3'-UUU...GUUUC AACAAAG AG AAAGG...GCA-5'@LB@ | |@LB@ 75 39@LB@@LB@@LB@Energy -11.26 kcal/mol@LB@Hybridization Energy -30.0675 kcal/mol@LB@Unfolding Energy - mRNA 14.0273 kcal/mol@LB@Unfolding Energy - sRNA 4.77707 kcal/mol@LB@@LB@Position - mRNA 235 -- 277@LB@Position - sRNA 40 -- 74@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 58 -- 64@LB@ |
160 |
0.007693 |
0.1668 |
b1671 |
ydhX |
-11.21 |
0.148807 |
210 -- 235 |
39 -- 74 |
putative 4Fe-4S ferridoxin-type protein; FNR Nar NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
b4072 |
_____________209__________________________________236\n_____________|____________________________________|\n5'-CAC...CCUUC___CG________________________U______GGGAA...AGG-3'\n______________ACU__ACGCA__AAUUUGU________UC_GGGGAU\n______________|||__||:||__||||:||________||_||||||\n______________UGA__UGUGU__UUAAGCA________AG_CCCCUA\n3'-UUU...GUUUC___UG_____CG_______ACAAAGUG__U______AAGGU...GCA-5'\n_____________|____________________________________|\n_____________75___________________________________38\n |
220 -- 226 |
56 -- 62 |
-21.5478 kcal/mol |
5.56457 kcal/mol |
4.77831 kcal/mol |
209 236@LB@ | |@LB@5'-CAC...CCUUC CG U GGGAA...AGG-3'@LB@ ACU ACGCA AAUUUGU UC GGGGAU@LB@ ||| ||:|| ||||:|| || ||||||@LB@ UGA UGUGU UUAAGCA AG CCCCUA@LB@3'-UUU...GUUUC UG CG ACAAAGUG U AAGGU...GCA-5'@LB@ | |@LB@ 75 38@LB@@LB@@LB@Energy -11.21 kcal/mol@LB@Hybridization Energy -21.5478 kcal/mol@LB@Unfolding Energy - mRNA 5.56457 kcal/mol@LB@Unfolding Energy - sRNA 4.77831 kcal/mol@LB@@LB@Position - mRNA 210 -- 235@LB@Position - sRNA 39 -- 74@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 56 -- 62@LB@ |
173 |
0.008582 |
0.1745 |
b0060 |
polB |
-11.19 |
0.150164 |
8 -- 23 |
39 -- 51 |
DNA polymerase II |
|
_____________7________________24\n_____________|________________|\n____5'-GAAGAGG_______UAU______AUUCU...AGG-3'\n______________UCGCUUA___GGGGAU\n______________||:||:|___||||||\n______________AGUGAGU___CCCCUA\n3'-UUU...AACAA________________AAGGU...GCA-5'\n_____________|________________|\n_____________52_______________38\n |
8 -- 14 |
45 -- 51 |
-16.4647 kcal/mol |
3.48224 kcal/mol |
1.79807 kcal/mol |
7 24@LB@ | |@LB@ 5'-GAAGAGG UAU AUUCU...AGG-3'@LB@ UCGCUUA GGGGAU@LB@ ||:||:| ||||||@LB@ AGUGAGU CCCCUA@LB@3'-UUU...AACAA AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -16.4647 kcal/mol@LB@Unfolding Energy - mRNA 3.48224 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 8 -- 23@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 45 -- 51@LB@ |
111 |
0.004903 |
0.1545 |
b1735 |
chbR |
-11.17 |
0.151186 |
109 -- 138 |
30 -- 50 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________108____________________________139\n_____________|______________________________|\n5'-GAU...GUCCA________AUCAUUUAAU__CG________UGCGC...CUG-3'\n______________CGCUCAGG__________GA__UCCAUGCU\n______________|:||||||__________||__||||||||\n______________GUGAGUCC__________CU__AGGUACGA\n3'-UUU...ACAAA________C___________AA________AUAUU...GCA-5'\n_____________|______________________________|\n_____________51_____________________________29\n |
132 -- 138 |
30 -- 36 |
-23.5874 kcal/mol |
7.28235 kcal/mol |
5.13509 kcal/mol |
108 139@LB@ | |@LB@5'-GAU...GUCCA AUCAUUUAAU CG UGCGC...CUG-3'@LB@ CGCUCAGG GA UCCAUGCU@LB@ |:|||||| || ||||||||@LB@ GUGAGUCC CU AGGUACGA@LB@3'-UUU...ACAAA C AA AUAUU...GCA-5'@LB@ | |@LB@ 51 29@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.5874 kcal/mol@LB@Unfolding Energy - mRNA 7.28235 kcal/mol@LB@Unfolding Energy - sRNA 5.13509 kcal/mol@LB@@LB@Position - mRNA 109 -- 138@LB@Position - sRNA 30 -- 50@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 30 -- 36@LB@ |
199 |
0.01026 |
0.1776 |
b2324 |
mnmC |
-11.15 |
0.152427 |
29 -- 45 |
45 -- 74 |
fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme |
|
_____________28_____________________________46\n_____________|______________________________|\n5'-GCU...UAAUC______________________________AUACC...ACG-3'\n______________ACUGCAC_____________GUUUCAUUCA\n______________|||:|||_____________||||||:|||\n______________UGAUGUG_____________CAAAGUGAGU\n3'-UUU...GUUUC_______UGUCGUUAAGCAA__________CCCCU...GCA-5'\n_____________|______________________________|\n_____________75_____________________________44\n |
39 -- 45 |
45 -- 51 |
-17.885 kcal/mol |
2.99426 kcal/mol |
3.74056 kcal/mol |
28 46@LB@ | |@LB@5'-GCU...UAAUC AUACC...ACG-3'@LB@ ACUGCAC GUUUCAUUCA@LB@ |||:||| ||||||:|||@LB@ UGAUGUG CAAAGUGAGU@LB@3'-UUU...GUUUC UGUCGUUAAGCAA CCCCU...GCA-5'@LB@ | |@LB@ 75 44@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -17.885 kcal/mol@LB@Unfolding Energy - mRNA 2.99426 kcal/mol@LB@Unfolding Energy - sRNA 3.74056 kcal/mol@LB@@LB@Position - mRNA 29 -- 45@LB@Position - sRNA 45 -- 74@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 45 -- 51@LB@ |
38 |
0.0006674 |
0.0618 |
b2069 |
yegD |
-11.14 |
0.153468 |
57 -- 84 |
48 -- 76 |
Hsp70 chaperone family protein |
|
_____________56____________________________85\n_____________|_____________________________|\n5'-CAC...AGUUC___G_______C___UC__CUUA______CCGCU...UGC-3'\n______________AGG_UAUACAU_GCA__UC_____UUCAU\n______________||:_||:|||:_|||__||_____||||:\n______________UCU_AUGUGUG_CGU__AG_____AAGUG\n3'-UUU...CCGUU___G_______U___UA__CAACA_____AGUCC...GCA-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
61 -- 67 |
66 -- 72 |
-18.1339 kcal/mol |
3.31217 kcal/mol |
3.68714 kcal/mol |
56 85@LB@ | |@LB@5'-CAC...AGUUC G C UC CUUA CCGCU...UGC-3'@LB@ AGG UAUACAU GCA UC UUCAU@LB@ ||: ||:|||: ||| || ||||:@LB@ UCU AUGUGUG CGU AG AAGUG@LB@3'-UUU...CCGUU G U UA CAACA AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -18.1339 kcal/mol@LB@Unfolding Energy - mRNA 3.31217 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 57 -- 84@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 66 -- 72@LB@ |
75 |
0.003119 |
0.1452 |
b0871 |
poxB |
-11.12 |
0.154817 |
181 -- 203 |
32 -- 50 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________180_____________________204\n_____________|_______________________|\n5'-CCG...UAUCA________AGAU___GAA_____AAACA...GUG-3'\n______________CAUUCAGG____GGA___CCAUG\n______________||:|||||____|||___|||||\n______________GUGAGUCC____CCU___GGUAC\n3'-UUU...ACAAA_______________AAA_____GAAUA...GCA-5'\n_____________|_______________________|\n_____________51______________________31\n |
182 -- 188 |
43 -- 49 |
-21.2585 kcal/mol |
5.84423 kcal/mol |
4.29868 kcal/mol |
180 204@LB@ | |@LB@5'-CCG...UAUCA AGAU GAA AAACA...GUG-3'@LB@ CAUUCAGG GGA CCAUG@LB@ ||:||||| ||| |||||@LB@ GUGAGUCC CCU GGUAC@LB@3'-UUU...ACAAA AAA GAAUA...GCA-5'@LB@ | |@LB@ 51 31@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -21.2585 kcal/mol@LB@Unfolding Energy - mRNA 5.84423 kcal/mol@LB@Unfolding Energy - sRNA 4.29868 kcal/mol@LB@@LB@Position - mRNA 181 -- 203@LB@Position - sRNA 32 -- 50@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 43 -- 49@LB@ |
66 |
0.002697 |
0.1417 |
b1306 |
pspC |
-11.06 |
0.158336 |
44 -- 64 |
55 -- 75 |
psp operon transcription co-activator |
|
_____________43_____________________65\n_____________|______________________|\n5'-CCG...GUUAU_______U______________CUGGU...CGG-3'\n______________GGCUGCA_UACAGCAAU_CGUU\n______________|:||:||_:||||||||_||||\n______________CUGAUGU_GUGUCGUUA_GCAA\n3'-UUU...CGUUU_________________A____CAAAG...GCA-5'\n_____________|______________________|\n_____________76_____________________54\n |
54 -- 60 |
60 -- 66 |
-24.9269 kcal/mol |
10.2549 kcal/mol |
3.6092 kcal/mol |
43 65@LB@ | |@LB@5'-CCG...GUUAU U CUGGU...CGG-3'@LB@ GGCUGCA UACAGCAAU CGUU@LB@ |:||:|| :|||||||| ||||@LB@ CUGAUGU GUGUCGUUA GCAA@LB@3'-UUU...CGUUU A CAAAG...GCA-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -24.9269 kcal/mol@LB@Unfolding Energy - mRNA 10.2549 kcal/mol@LB@Unfolding Energy - sRNA 3.6092 kcal/mol@LB@@LB@Position - mRNA 44 -- 64@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 60 -- 66@LB@ |
172 |
0.008479 |
0.1735 |
b4395 |
ytjC |
-10.99 |
0.163500 |
244 -- 268 |
34 -- 71 |
phosphatase |
|
_____________243____________________________________269\n_____________|______________________________________|\n5'-UCC...GUGGA____CG________________________________GUCUG...AGC-3'\n______________ACGC__AGCGA__CGU______AUUCAGGG_____CCA\n______________||:|__|||:|__|||______|:||||||_____|||\n______________UGUG__UCGUU__GCA______UGAGUCCC_____GGU\n3'-UUU...UCUGA____UG_____AA___ACAAAG________CUAAA___ACGAA...GCA-5'\n_____________|______________________________________|\n_____________72_____________________________________33\n |
259 -- 265 |
42 -- 48 |
-22.1302 kcal/mol |
6.3498 kcal/mol |
4.79237 kcal/mol |
243 269@LB@ | |@LB@5'-UCC...GUGGA CG GUCUG...AGC-3'@LB@ ACGC AGCGA CGU AUUCAGGG CCA@LB@ ||:| |||:| ||| |:|||||| |||@LB@ UGUG UCGUU GCA UGAGUCCC GGU@LB@3'-UUU...UCUGA UG AA ACAAAG CUAAA ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -22.1302 kcal/mol@LB@Unfolding Energy - mRNA 6.3498 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 244 -- 268@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |
86 |
0.003687 |
0.1509 |
b0774 |
bioA |
-10.95 |
0.166636 |
92 -- 152 |
44 -- 98 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________91_____________________________________________________________153\n_____________|______________________________________________________________|\n5'-ACG...ACAAU_____G______C____A__CAU______UCUCCAAA___U__UU_________A_______UGUAG...AAG-3'\n______________GUCCA_CGUGGG_GGUG_GC___GGGGCU________ACG_GU__UUUGUUGUU__AUUCGG\n______________|:|||_||||||_|:||_||___::|:||________||:_|:__||:||||||__|:||:|\n______________CGGGU_GCACCC_CUAC_CG___UUCUGA________UGU_CG__AAGCAACAA__UGAGUC\n____3'-UUUUUUU_____A______U____C__U________UGUG__________UU_________AG______CCCUA...GCA-5'\n_____________|______________________________________________________________|\n_____________99_____________________________________________________________43\n |
139 -- 145 |
52 -- 58 |
-48.0349 kcal/mol |
20.1482 kcal/mol |
16.9429 kcal/mol |
91 153@LB@ | |@LB@5'-ACG...ACAAU G C A CAU UCUCCAAA U UU A UGUAG...AAG-3'@LB@ GUCCA CGUGGG GGUG GC GGGGCU ACG GU UUUGUUGUU AUUCGG@LB@ |:||| |||||| |:|| || ::|:|| ||: |: ||:|||||| |:||:|@LB@ CGGGU GCACCC CUAC CG UUCUGA UGU CG AAGCAACAA UGAGUC@LB@ 3'-UUUUUUU A U C U UGUG UU AG CCCUA...GCA-5'@LB@ | |@LB@ 99 43@LB@@LB@@LB@Energy -10.95 kcal/mol@LB@Hybridization Energy -48.0349 kcal/mol@LB@Unfolding Energy - mRNA 20.1482 kcal/mol@LB@Unfolding Energy - sRNA 16.9429 kcal/mol@LB@@LB@Position - mRNA 92 -- 152@LB@Position - sRNA 44 -- 98@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
79 |
0.00332 |
0.1462 |
b1845 |
ptrB |
-10.90 |
0.169644 |
42 -- 70 |
35 -- 70 |
protease II |
|
_____________41____________________________________71\n_____________|_____________________________________|\n5'-UCU...AGAAU________C_____AA____________CU_______UCUGU...AGC-3'\n______________CGCACAGC_AUUUG__________CAGG__GAUUUUC\n______________|:||||||_|||:|__________||||__|||||:|\n______________GUGUGUCG_UAAGC__________GUCC__CUAAAGG\n3'-UUU...CUGAU________U_____AACAAAGUGA____C________UACGA...GCA-5'\n_____________|_____________________________________|\n_____________71____________________________________34\n |
64 -- 70 |
35 -- 41 |
-24.5069 kcal/mol |
8.82337 kcal/mol |
4.7817 kcal/mol |
41 71@LB@ | |@LB@5'-UCU...AGAAU C AA CU UCUGU...AGC-3'@LB@ CGCACAGC AUUUG CAGG GAUUUUC@LB@ |:|||||| |||:| |||| |||||:|@LB@ GUGUGUCG UAAGC GUCC CUAAAGG@LB@3'-UUU...CUGAU U AACAAAGUGA C UACGA...GCA-5'@LB@ | |@LB@ 71 34@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.5069 kcal/mol@LB@Unfolding Energy - mRNA 8.82337 kcal/mol@LB@Unfolding Energy - sRNA 4.7817 kcal/mol@LB@@LB@Position - mRNA 42 -- 70@LB@Position - sRNA 35 -- 70@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 35 -- 41@LB@ |
82 |
0.00343 |
0.1462 |
b4043 |
lexA |
-10.80 |
0.176998 |
163 -- 196 |
40 -- 72 |
transcriptional repressor of SOS regulon |
|
_____________162________________________________197\n_____________|__________________________________|\n5'-CGC...GUAUA___U_______UAAC___AUAUA___C_______CGGAA...AGC-3'\n______________UAC_CACAGCA____UGU_____CAC_CAGGGGG\n______________|||_|||||||____:||_____|||_||||||:\n______________AUG_GUGUCGU____GCA_____GUG_GUCCCCU\n3'-UUU...UUCUG___U_______UAA____ACAAA___A_______AAAGG...GCA-5'\n_____________|__________________________________|\n_____________73_________________________________39\n |
190 -- 196 |
40 -- 46 |
-30.123 kcal/mol |
14.5591 kcal/mol |
4.76217 kcal/mol |
162 197@LB@ | |@LB@5'-CGC...GUAUA U UAAC AUAUA C CGGAA...AGC-3'@LB@ UAC CACAGCA UGU CAC CAGGGGG@LB@ ||| ||||||| :|| ||| ||||||:@LB@ AUG GUGUCGU GCA GUG GUCCCCU@LB@3'-UUU...UUCUG U UAA ACAAA A AAAGG...GCA-5'@LB@ | |@LB@ 73 39@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -30.123 kcal/mol@LB@Unfolding Energy - mRNA 14.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.76217 kcal/mol@LB@@LB@Position - mRNA 163 -- 196@LB@Position - sRNA 40 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 40 -- 46@LB@ |
143 |
0.006558 |
0.1605 |
b0161 |
degP |
-10.78 |
0.178564 |
159 -- 170 |
58 -- 69 |
serine endoprotease (protease Do) membrane-associated |
|
_____________158__________171\n_____________|____________|\n5'-AUU...GAAGA____________UGCGU...CGA-3'\n______________ACACAGCAAUUU\n______________|||||||||||:\n______________UGUGUCGUUAAG\n3'-UUU...UGAUG____________CAACA...GCA-5'\n_____________|____________|\n_____________70___________57\n |
164 -- 170 |
58 -- 64 |
-16.5275 kcal/mol |
2.62124 kcal/mol |
3.12494 kcal/mol |
158 171@LB@ | |@LB@5'-AUU...GAAGA UGCGU...CGA-3'@LB@ ACACAGCAAUUU@LB@ |||||||||||:@LB@ UGUGUCGUUAAG@LB@3'-UUU...UGAUG CAACA...GCA-5'@LB@ | |@LB@ 70 57@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -16.5275 kcal/mol@LB@Unfolding Energy - mRNA 2.62124 kcal/mol@LB@Unfolding Energy - sRNA 3.12494 kcal/mol@LB@@LB@Position - mRNA 159 -- 170@LB@Position - sRNA 58 -- 69@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 58 -- 64@LB@ |
134 |
0.006141 |
0.1605 |
b3413 |
gntX |
-10.72 |
0.183370 |
226 -- 267 |
37 -- 75 |
DNA catabolic protein |
|
_____________225__________________________________________268\n_____________|____________________________________________|\n5'-CCC...AUGCU___________AAU__CACUGG____AGG_______________GUUCG...AUA-3'\n______________GGCUAUGC_CG___GC______CGUU___UCAUU_GGGGGAUUU\n______________|:|||::|_|:___||______||||___|||:|_:||||||||\n______________CUGAUGUG_GU___CG______GCAA___AGUGA_UCCCCUAAA\n3'-UUU...CGUUU________U_______UUAA______CAA_____G_________GGUAC...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________36\n |
261 -- 267 |
37 -- 43 |
-30.3916 kcal/mol |
14.8943 kcal/mol |
4.77966 kcal/mol |
225 268@LB@ | |@LB@5'-CCC...AUGCU AAU CACUGG AGG GUUCG...AUA-3'@LB@ GGCUAUGC CG GC CGUU UCAUU GGGGGAUUU@LB@ |:|||::| |: || |||| |||:| :||||||||@LB@ CUGAUGUG GU CG GCAA AGUGA UCCCCUAAA@LB@3'-UUU...CGUUU U UUAA CAA G GGUAC...GCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -30.3916 kcal/mol@LB@Unfolding Energy - mRNA 14.8943 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 226 -- 267@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 37 -- 43@LB@ |
130 |
0.005881 |
0.1577 |
b0965 |
yccU |
-10.68 |
0.186123 |
93 -- 125 |
46 -- 74 |
putative CoA-binding protein |
|
_____________92________________________________126\n_____________|_________________________________|\n5'-UCA...UACUU___A________A__UAU___CCGC________UCAUU...UGA-3'\n______________ACU_ACAUAUAG_CA___UUC____UUUUGCUC\n______________|||_|||:|:||_||___|||____|||::|||\n______________UGA_UGUGUGUC_GU___AAG____AAAGUGAG\n3'-UUU...GUUUC_______________U_____CAAC________UCCCC...GCA-5'\n_____________|_________________________________|\n_____________75________________________________45\n |
119 -- 125 |
46 -- 52 |
-18.0647 kcal/mol |
3.65669 kcal/mol |
3.72594 kcal/mol |
92 126@LB@ | |@LB@5'-UCA...UACUU A A UAU CCGC UCAUU...UGA-3'@LB@ ACU ACAUAUAG CA UUC UUUUGCUC@LB@ ||| |||:|:|| || ||| |||::|||@LB@ UGA UGUGUGUC GU AAG AAAGUGAG@LB@3'-UUU...GUUUC U CAAC UCCCC...GCA-5'@LB@ | |@LB@ 75 45@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -18.0647 kcal/mol@LB@Unfolding Energy - mRNA 3.65669 kcal/mol@LB@Unfolding Energy - sRNA 3.72594 kcal/mol@LB@@LB@Position - mRNA 93 -- 125@LB@Position - sRNA 46 -- 74@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 46 -- 52@LB@ |
198 |
0.01016 |
0.1776 |
b1764 |
selD |
-10.66 |
0.187945 |
118 -- 146 |
45 -- 71 |
selenophosphate synthase |
|
_____________117___________________________147\n_____________|_____________________________|\n5'-UUU...AGCAA_G______G_____AGACACUC_______UCACU...AGC-3'\n______________A_GCGCAG_AAUUC________UCACUUA\n______________|_:|:|||_|||||________|||||:|\n______________U_UGUGUC_UUAAG________AGUGAGU\n3'-UUU...UCUGA_G______G_____CAACAA_________CCCCU...GCA-5'\n_____________|_____________________________|\n_____________72____________________________44\n |
140 -- 146 |
45 -- 51 |
-20.1282 kcal/mol |
5.75637 kcal/mol |
3.71323 kcal/mol |
117 147@LB@ | |@LB@5'-UUU...AGCAA G G AGACACUC UCACU...AGC-3'@LB@ A GCGCAG AAUUC UCACUUA@LB@ | :|:||| ||||| |||||:|@LB@ U UGUGUC UUAAG AGUGAGU@LB@3'-UUU...UCUGA G G CAACAA CCCCU...GCA-5'@LB@ | |@LB@ 72 44@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -20.1282 kcal/mol@LB@Unfolding Energy - mRNA 5.75637 kcal/mol@LB@Unfolding Energy - sRNA 3.71323 kcal/mol@LB@@LB@Position - mRNA 118 -- 146@LB@Position - sRNA 45 -- 71@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 45 -- 51@LB@ |
103 |
0.004595 |
0.1538 |
b3554 |
yiaF |
-10.61 |
0.191588 |
8 -- 38 |
46 -- 75 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________7_________________________________39\n_____________|_________________________________|\n____5'-AAUCUCU_______AAAAA_________GCACUA______UUUAA...AGC-3'\n______________GGCUACA_____GGCAA__CG______UCAUUU\n______________|:|||||_____:||||__||______|||:|:\n______________CUGAUGU_____UCGUU__GC______AGUGAG\n3'-UUU...CGUUU_______GUG_______AA__AACAA_______UCCCC...GCA-5'\n_____________|_________________________________|\n_____________76________________________________45\n |
8 -- 14 |
69 -- 75 |
-17.9003 kcal/mol |
3.5618 kcal/mol |
3.72616 kcal/mol |
7 39@LB@ | |@LB@ 5'-AAUCUCU AAAAA GCACUA UUUAA...AGC-3'@LB@ GGCUACA GGCAA CG UCAUUU@LB@ |:||||| :|||| || |||:|:@LB@ CUGAUGU UCGUU GC AGUGAG@LB@3'-UUU...CGUUU GUG AA AACAA UCCCC...GCA-5'@LB@ | |@LB@ 76 45@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -17.9003 kcal/mol@LB@Unfolding Energy - mRNA 3.5618 kcal/mol@LB@Unfolding Energy - sRNA 3.72616 kcal/mol@LB@@LB@Position - mRNA 8 -- 38@LB@Position - sRNA 46 -- 75@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 69 -- 75@LB@ |
105 |
0.004683 |
0.1538 |
b3349 |
slyD |
-10.61 |
0.192215 |
166 -- 197 |
39 -- 73 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________165_________________________________198\n_____________|___________________________________|\n5'-UGU...ACAAU___________U____UUCCCAU________A___AUCAU...ACU-3'\n______________CUGCGC_CA_C_AUUC________GCUCAGG_GAU\n______________||:|:|_||_|_||||________:||||||_|||\n______________GAUGUG_GU_G_UAAG________UGAGUCC_CUA\n3'-UUU...UUUCU______U__C_U____CAACAAAG_______C___AAGGU...GCA-5'\n_____________|___________________________________|\n_____________74__________________________________38\n |
187 -- 193 |
43 -- 49 |
-23.2642 kcal/mol |
7.88699 kcal/mol |
4.77295 kcal/mol |
165 198@LB@ | |@LB@5'-UGU...ACAAU U UUCCCAU A AUCAU...ACU-3'@LB@ CUGCGC CA C AUUC GCUCAGG GAU@LB@ ||:|:| || | |||| :|||||| |||@LB@ GAUGUG GU G UAAG UGAGUCC CUA@LB@3'-UUU...UUUCU U C U CAACAAAG C AAGGU...GCA-5'@LB@ | |@LB@ 74 38@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -23.2642 kcal/mol@LB@Unfolding Energy - mRNA 7.88699 kcal/mol@LB@Unfolding Energy - sRNA 4.77295 kcal/mol@LB@@LB@Position - mRNA 166 -- 197@LB@Position - sRNA 39 -- 73@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |
89 |
0.003963 |
0.1538 |
b1252 |
tonB |
-10.58 |
0.194225 |
25 -- 43 |
64 -- 82 |
membrane spanning protein in TonB-ExbB-ExbD transport complex |
|
_____________24___________________44\n_____________|____________________|\n5'-AGU...UGAAA_________U__________AAAGA...AUC-3'\n______________GGGCGAAGA_CUGCA_ACGG\n______________||||:||||_||:||_||:|\n______________CCCGUUUCU_GAUGU_UGUC\n3'-UUU...CUCUA_______________G____GUUAA...GCA-5'\n_____________|____________________|\n_____________83___________________63\n |
25 -- 31 |
76 -- 82 |
-25.6168 kcal/mol |
4.83236 kcal/mol |
10.2054 kcal/mol |
24 44@LB@ | |@LB@5'-AGU...UGAAA U AAAGA...AUC-3'@LB@ GGGCGAAGA CUGCA ACGG@LB@ ||||:|||| ||:|| ||:|@LB@ CCCGUUUCU GAUGU UGUC@LB@3'-UUU...CUCUA G GUUAA...GCA-5'@LB@ | |@LB@ 83 63@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -25.6168 kcal/mol@LB@Unfolding Energy - mRNA 4.83236 kcal/mol@LB@Unfolding Energy - sRNA 10.2054 kcal/mol@LB@@LB@Position - mRNA 25 -- 43@LB@Position - sRNA 64 -- 82@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 76 -- 82@LB@ |
34 |
0.0005364 |
0.05552 |
b4244 |
pyrI |
-10.55 |
0.196904 |
198 -- 215 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________197________________216\n_____________|__________________|\n5'-UUC...AAAUA_____G_______A____AAAUU...UCA-3'\n______________GAGAU_ACACACG_UAAU\n______________:|||:_||||||:_:|||\n______________UUCUG_UGUGUGU_GUUA\n3'-UUU...CCCGU_____A_______C____AGCAA...GCA-5'\n_____________|__________________|\n_____________78_________________59\n |
204 -- 210 |
65 -- 71 |
-15.1619 kcal/mol |
1.32522 kcal/mol |
3.29036 kcal/mol |
197 216@LB@ | |@LB@5'-UUC...AAAUA G A AAAUU...UCA-3'@LB@ GAGAU ACACACG UAAU@LB@ :|||: ||||||: :|||@LB@ UUCUG UGUGUGU GUUA@LB@3'-UUU...CCCGU A C AGCAA...GCA-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -15.1619 kcal/mol@LB@Unfolding Energy - mRNA 1.32522 kcal/mol@LB@Unfolding Energy - sRNA 3.29036 kcal/mol@LB@@LB@Position - mRNA 198 -- 215@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 65 -- 71@LB@ |
187 |
0.009506 |
0.1776 |
b1243 |
oppA |
-10.52 |
0.199375 |
11 -- 17 |
40 -- 46 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________10______18\n_____________|_______|\n5'-UGU...CUCGA_______GACAC...UCA-3'\n______________CAGGGGA\n______________|||||||\n______________GUCCCCU\n3'-UUU...AGUGA_______AAAGG...GCA-5'\n_____________|_______|\n_____________47______39\n |
11 -- 17 |
40 -- 46 |
-13.6251 kcal/mol |
1.75344 kcal/mol |
1.35582 kcal/mol |
10 18@LB@ | |@LB@5'-UGU...CUCGA GACAC...UCA-3'@LB@ CAGGGGA@LB@ |||||||@LB@ GUCCCCU@LB@3'-UUU...AGUGA AAAGG...GCA-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -13.6251 kcal/mol@LB@Unfolding Energy - mRNA 1.75344 kcal/mol@LB@Unfolding Energy - sRNA 1.35582 kcal/mol@LB@@LB@Position - mRNA 11 -- 17@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 40 -- 46@LB@ |
43 |
0.00107 |
0.08759 |
b4036 |
lamB |
-10.48 |
0.202041 |
185 -- 197 |
39 -- 51 |
maltose outer membrane porin (maltoporin) |
|
_____________184___________198\n_____________|_____________|\n5'-CGC...AGCAA_G_______A___AGAAU...GUU-3'\n______________U_ACUCAGG_GAU\n______________|_|||||||_|||\n______________A_UGAGUCC_CUA\n3'-UUU...AACAA_G_______C___AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
187 -- 193 |
43 -- 49 |
-14.6452 kcal/mol |
2.36402 kcal/mol |
1.79807 kcal/mol |
184 198@LB@ | |@LB@5'-CGC...AGCAA G A AGAAU...GUU-3'@LB@ U ACUCAGG GAU@LB@ | ||||||| |||@LB@ A UGAGUCC CUA@LB@3'-UUU...AACAA G C AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -14.6452 kcal/mol@LB@Unfolding Energy - mRNA 2.36402 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 185 -- 197@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |
145 |
0.006641 |
0.1605 |
b3316 |
rpsS |
-10.41 |
0.208024 |
125 -- 141 |
61 -- 77 |
30S ribosomal subunit protein S19 |
|
_____________124_______________142\n_____________|_________________|\n5'-GCG...AAGGU____AG__C________CAAGC...CUU-3'\n______________AAGA__AC_CGCAGCAA\n______________||||__||_|:||||||\n______________UUCU__UG_GUGUCGUU\n3'-UUU...CCCGU____GA__U________AAGCA...GCA-5'\n_____________|_________________|\n_____________78________________60\n |
135 -- 141 |
61 -- 67 |
-16.0034 kcal/mol |
2.33428 kcal/mol |
3.25748 kcal/mol |
124 142@LB@ | |@LB@5'-GCG...AAGGU AG C CAAGC...CUU-3'@LB@ AAGA AC CGCAGCAA@LB@ |||| || |:||||||@LB@ UUCU UG GUGUCGUU@LB@3'-UUU...CCCGU GA U AAGCA...GCA-5'@LB@ | |@LB@ 78 60@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -16.0034 kcal/mol@LB@Unfolding Energy - mRNA 2.33428 kcal/mol@LB@Unfolding Energy - sRNA 3.25748 kcal/mol@LB@@LB@Position - mRNA 125 -- 141@LB@Position - sRNA 61 -- 77@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 61 -- 67@LB@ |
122 |
0.005462 |
0.1553 |
b3143 |
yraI |
-10.36 |
0.212908 |
69 -- 81 |
40 -- 51 |
putative periplasmic pilin chaperone |
b0939 b4316 b0531 |
_____________68____________82\n_____________|_____________|\n5'-GGA...AGAAA____CC_______AGCAG...UGA-3'\n______________UCAC__CAGGGGA\n______________||||__|||||||\n______________AGUG__GUCCCCU\n3'-UUU...AACAA____A________AAAGG...GCA-5'\n_____________|_____________|\n_____________52____________39\n |
75 -- 81 |
40 -- 46 |
-16.6795 kcal/mol |
4.56539 kcal/mol |
1.76028 kcal/mol |
68 82@LB@ | |@LB@5'-GGA...AGAAA CC AGCAG...UGA-3'@LB@ UCAC CAGGGGA@LB@ |||| |||||||@LB@ AGUG GUCCCCU@LB@3'-UUU...AACAA A AAAGG...GCA-5'@LB@ | |@LB@ 52 39@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -16.6795 kcal/mol@LB@Unfolding Energy - mRNA 4.56539 kcal/mol@LB@Unfolding Energy - sRNA 1.76028 kcal/mol@LB@@LB@Position - mRNA 69 -- 81@LB@Position - sRNA 40 -- 51@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 40 -- 46@LB@ |
55 |
0.001955 |
0.1223 |
b0840 |
deoR |
-10.34 |
0.214583 |
216 -- 260 |
60 -- 103 |
deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
|
_____________215____________________________________________261\n_____________|______________________________________________|\n5'-GUG...GUCGC_______G________C__C__CU_____A____AA__________AAGUU...UUU-3'\n______________GAAGAGC_UAUCG_GG_AG_UG__GCAAG_AUUA__ACGCAGCGAU\n______________:||:|||_:||||_||_||_||__||||:_|:||__||:||||:||\n______________UUUUUCG_GUAGC_CC_UC_AC__CGUUU_UGAU__UGUGUCGUUA\n_________3'-UU_______G_____A__C__U__C______C____G___________AGCAA...GCA-5'\n_____________|______________________________________________|\n_____________104____________________________________________59\n |
254 -- 260 |
60 -- 66 |
-39.4084 kcal/mol |
12.9673 kcal/mol |
16.1071 kcal/mol |
215 261@LB@ | |@LB@5'-GUG...GUCGC G C C CU A AA AAGUU...UUU-3'@LB@ GAAGAGC UAUCG GG AG UG GCAAG AUUA ACGCAGCGAU@LB@ :||:||| :|||| || || || ||||: |:|| ||:||||:||@LB@ UUUUUCG GUAGC CC UC AC CGUUU UGAU UGUGUCGUUA@LB@ 3'-UU G A C U C C G AGCAA...GCA-5'@LB@ | |@LB@ 104 59@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -39.4084 kcal/mol@LB@Unfolding Energy - mRNA 12.9673 kcal/mol@LB@Unfolding Energy - sRNA 16.1071 kcal/mol@LB@@LB@Position - mRNA 216 -- 260@LB@Position - sRNA 60 -- 103@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 60 -- 66@LB@ |
64 |
0.002655 |
0.1417 |
b0876 |
ybjD |
-10.33 |
0.215429 |
171 -- 200 |
39 -- 78 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________170________________________________________201\n_____________|__________________________________________|\n5'-CGU...GCGUA______AAGU_____________________UGG________AUGAU...GGG-3'\n______________AAGGAU____CACAUA___________UUUC____AGGGGAU\n______________||:||:____||||:|___________||||____|||||||\n______________UUUCUG____GUGUGU___________AAAG____UCCCCUA\n3'-UUU...ACCCG______AU________CGUUAAGCAAC____UGAG_______AAGGU...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________38\n |
194 -- 200 |
39 -- 45 |
-20.0974 kcal/mol |
4.99339 kcal/mol |
4.77966 kcal/mol |
170 201@LB@ | |@LB@5'-CGU...GCGUA AAGU UGG AUGAU...GGG-3'@LB@ AAGGAU CACAUA UUUC AGGGGAU@LB@ ||:||: ||||:| |||| |||||||@LB@ UUUCUG GUGUGU AAAG UCCCCUA@LB@3'-UUU...ACCCG AU CGUUAAGCAAC UGAG AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -20.0974 kcal/mol@LB@Unfolding Energy - mRNA 4.99339 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 171 -- 200@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 39 -- 45@LB@ |
99 |
0.004523 |
0.1538 |
b1516 |
lsrB |
-10.33 |
0.215118 |
8 -- 28 |
39 -- 59 |
autoinducer 2-binding protein |
|
_____________7______________________29\n_____________|______________________|\n____5'-ACCGCCA___CG___________U_____AUUUG...UUC-3'\n______________UUG__GUUUUAUU_AG_GGGAU\n______________|:|__||||:|:|_||_|||||\n______________AGC__CAAAGUGA_UC_CCCUA\n3'-UUU...CGUUA___AA________G________AAGGU...GCA-5'\n_____________|______________________|\n_____________60_____________________38\n |
14 -- 20 |
47 -- 53 |
-16.4048 kcal/mol |
3.58309 kcal/mol |
2.49358 kcal/mol |
7 29@LB@ | |@LB@ 5'-ACCGCCA CG U AUUUG...UUC-3'@LB@ UUG GUUUUAUU AG GGGAU@LB@ |:| ||||:|:| || |||||@LB@ AGC CAAAGUGA UC CCCUA@LB@3'-UUU...CGUUA AA G AAGGU...GCA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -16.4048 kcal/mol@LB@Unfolding Energy - mRNA 3.58309 kcal/mol@LB@Unfolding Energy - sRNA 2.49358 kcal/mol@LB@@LB@Position - mRNA 8 -- 28@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 47 -- 53@LB@ |
157 |
0.007641 |
0.1668 |
b3154 |
yhbP |
-10.32 |
0.216043 |
188 -- 213 |
45 -- 78 |
UPF0306 family protein |
|
_____________187________________________________214\n_____________|__________________________________|\n5'-AAA...GUAUA_____GA____________GGAAA__________UCGCC...UUU-3'\n______________AAAGA______ACAGCAAU_________CACUCA\n______________|||||______||||||||_________||||||\n______________UUUCU______UGUCGUUA_________GUGAGU\n3'-UUU...ACCCG_____GAUGUG________AGCAACAAA______CCCCU...GCA-5'\n_____________|__________________________________|\n_____________79_________________________________44\n |
196 -- 202 |
60 -- 66 |
-17.2265 kcal/mol |
3.1682 kcal/mol |
3.741 kcal/mol |
187 214@LB@ | |@LB@5'-AAA...GUAUA GA GGAAA UCGCC...UUU-3'@LB@ AAAGA ACAGCAAU CACUCA@LB@ ||||| |||||||| ||||||@LB@ UUUCU UGUCGUUA GUGAGU@LB@3'-UUU...ACCCG GAUGUG AGCAACAAA CCCCU...GCA-5'@LB@ | |@LB@ 79 44@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -17.2265 kcal/mol@LB@Unfolding Energy - mRNA 3.1682 kcal/mol@LB@Unfolding Energy - sRNA 3.741 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 45 -- 78@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 60 -- 66@LB@ |
188 |
0.009562 |
0.1776 |
b0147 |
ligT |
-10.24 |
0.223023 |
2 -- 33 |
35 -- 66 |
2'-5' RNA ligase |
|
_____________1_________________________________34\n_____________|_________________________________|\n__________5'-C________GCAGCGG___GC____UU_______CGGCC...CGG-3'\n______________CAGCAGUU________CA__CAGG__GAUUUCC\n______________|||||:||________||__||||__|||||||\n______________GUCGUUAA________GU__GUCC__CUAAAGG\n3'-UUU...UGUGU________GCAACAAA__GA____C________UACGA...GCA-5'\n_____________|_________________________________|\n_____________67________________________________34\n |
27 -- 33 |
35 -- 41 |
-25.6384 kcal/mol |
10.64 kcal/mol |
4.7609 kcal/mol |
1 34@LB@ | |@LB@ 5'-C GCAGCGG GC UU CGGCC...CGG-3'@LB@ CAGCAGUU CA CAGG GAUUUCC@LB@ |||||:|| || |||| |||||||@LB@ GUCGUUAA GU GUCC CUAAAGG@LB@3'-UUU...UGUGU GCAACAAA GA C UACGA...GCA-5'@LB@ | |@LB@ 67 34@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -25.6384 kcal/mol@LB@Unfolding Energy - mRNA 10.64 kcal/mol@LB@Unfolding Energy - sRNA 4.7609 kcal/mol@LB@@LB@Position - mRNA 2 -- 33@LB@Position - sRNA 35 -- 66@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 35 -- 41@LB@ |
50 |
0.001668 |
0.1153 |
b2821 |
ptrA |
-10.19 |
0.227412 |
3 -- 12 |
46 -- 55 |
protease III |
|
_____________2__________13\n_____________|__________|\n_________5'-GC__________UAAUC...CCA-3'\n______________UGUUUCGCUU\n______________||||||:||:\n______________ACAAAGUGAG\n3'-UUU...AAGCA__________UCCCC...GCA-5'\n_____________|__________|\n_____________56_________45\n |
6 -- 12 |
46 -- 52 |
-11.8599 kcal/mol |
0.772948 kcal/mol |
0.89782 kcal/mol |
2 13@LB@ | |@LB@ 5'-GC UAAUC...CCA-3'@LB@ UGUUUCGCUU@LB@ ||||||:||:@LB@ ACAAAGUGAG@LB@3'-UUU...AAGCA UCCCC...GCA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -11.8599 kcal/mol@LB@Unfolding Energy - mRNA 0.772948 kcal/mol@LB@Unfolding Energy - sRNA 0.89782 kcal/mol@LB@@LB@Position - mRNA 3 -- 12@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 46 -- 52@LB@ |
96 |
0.004462 |
0.1538 |
b3260 |
dusB |
-10.19 |
0.227205 |
72 -- 117 |
38 -- 74 |
tRNA-dihydrouridine synthase B |
|
_____________71_____________________________________________118\n_____________|______________________________________________|\n5'-ACU...AUCGC__C____U__UUUUAAAU_______U___AUC__U_____A_____GGUCA...GAG-3'\n______________AC_ACGC_CA________GCAAUUC_UUG___CA_CUCAG_GGAUU\n______________||_||:|_||________|||||||_|||___||_|||||_|||||\n______________UG_UGUG_GU________CGUUAAG_AAC___GU_GAGUC_CCUAA\n3'-UUU...GUUUC__A____U_________________C___AAA________C_____AGGUA...GCA-5'\n_____________|______________________________________________|\n_____________75_____________________________________________37\n |
90 -- 96 |
58 -- 64 |
-26.7161 kcal/mol |
11.7467 kcal/mol |
4.77867 kcal/mol |
71 118@LB@ | |@LB@5'-ACU...AUCGC C U UUUUAAAU U AUC U A GGUCA...GAG-3'@LB@ AC ACGC CA GCAAUUC UUG CA CUCAG GGAUU@LB@ || ||:| || ||||||| ||| || ||||| |||||@LB@ UG UGUG GU CGUUAAG AAC GU GAGUC CCUAA@LB@3'-UUU...GUUUC A U C AAA C AGGUA...GCA-5'@LB@ | |@LB@ 75 37@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -26.7161 kcal/mol@LB@Unfolding Energy - mRNA 11.7467 kcal/mol@LB@Unfolding Energy - sRNA 4.77867 kcal/mol@LB@@LB@Position - mRNA 72 -- 117@LB@Position - sRNA 38 -- 74@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 58 -- 64@LB@ |
101 |
0.004534 |
0.1538 |
b2079 |
baeR |
-10.16 |
0.230535 |
155 -- 191 |
34 -- 71 |
response regulator in two-component regulatory system with BaeS |
|
_____________154_______________________________________192\n_____________|_________________________________________|\n5'-CAG...GGUAA___U________A_____AC______G_AAC______UA__GAGAG...CGA-3'\n______________GCA_UACAGUAG___GUU____CGCU_G___GGGAUU__CA\n______________:||_:||||:|:___|||____|:||_:___||||||__||\n______________UGU_GUGUCGUU___CAA____GUGA_U___CCCUAA__GU\n3'-UUU...UCUGA____________AAG___CAAA____G_C________AG__ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________72________________________________________33\n |
160 -- 166 |
61 -- 67 |
-23.4603 kcal/mol |
8.51419 kcal/mol |
4.79237 kcal/mol |
154 192@LB@ | |@LB@5'-CAG...GGUAA U A AC G AAC UA GAGAG...CGA-3'@LB@ GCA UACAGUAG GUU CGCU G GGGAUU CA@LB@ :|| :||||:|: ||| |:|| : |||||| ||@LB@ UGU GUGUCGUU CAA GUGA U CCCUAA GU@LB@3'-UUU...UCUGA AAG CAAA G C AG ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -23.4603 kcal/mol@LB@Unfolding Energy - mRNA 8.51419 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 155 -- 191@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 61 -- 67@LB@ |
80 |
0.003376 |
0.1462 |
b3098 |
yqjD |
-10.12 |
0.233597 |
155 -- 204 |
31 -- 75 |
membrane-anchored ribosome-binding protein |
|
_____________154_________________________________________________205\n_____________|___________________________________________________|\n5'-UCA...CGCGC______UA__UCA____A___CACUAC_______CCU__A__AAA______CGAAA...AAG-3'\n______________GACUAC__AC___CAAU__GU______UUACUCA___GG_GA___CUAUGU\n______________||||||__||___||||__||______|:|||||___||_||___|:|||:\n______________CUGAUG__UG___GUUA__CA______AGUGAGU___CC_CU___GGUACG\n3'-UUU...CGUUU______UG__UC_____AG__ACAA_________C_______AAA______AAUAU...GCA-5'\n_____________|___________________________________________________|\n_____________76__________________________________________________30\n |
181 -- 187 |
45 -- 51 |
-24.4421 kcal/mol |
7.05998 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UCA...CGCGC UA UCA A CACUAC CCU A AAA CGAAA...AAG-3'@LB@ GACUAC AC CAAU GU UUACUCA GG GA CUAUGU@LB@ |||||| || |||| || |:||||| || || |:|||:@LB@ CUGAUG UG GUUA CA AGUGAGU CC CU GGUACG@LB@3'-UUU...CGUUU UG UC AG ACAA C AAA AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -24.4421 kcal/mol@LB@Unfolding Energy - mRNA 7.05998 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 45 -- 51@LB@ |
185 |
0.009421 |
0.1776 |
b3094 |
exuR |
-10.10 |
0.235203 |
51 -- 95 |
35 -- 75 |
hexuronate regulon transcriptional repressor; autorepressor |
|
_____________50____________________________________________96\n_____________|_____________________________________________|\n5'-CCG...AUAAC___CC_____C____CAUUAAC_______GUA__UUUUA______CUUCA...CUG-3'\n______________GAU__CGCAC_GCAA_______GUUUCGU___AG_____GUUUCC\n______________||:__|:|||_||||_______|||||::___||_____:|||||\n______________CUG__GUGUG_CGUU_______CAAAGUG___UC_____UAAAGG\n3'-UUU...CGUUU___AU_____U____AAGCAA________AG___CCC________UACGA...GCA-5'\n_____________|_____________________________________________|\n_____________76____________________________________________34\n |
73 -- 79 |
48 -- 54 |
-21.0703 kcal/mol |
6.16224 kcal/mol |
4.80541 kcal/mol |
50 96@LB@ | |@LB@5'-CCG...AUAAC CC C CAUUAAC GUA UUUUA CUUCA...CUG-3'@LB@ GAU CGCAC GCAA GUUUCGU AG GUUUCC@LB@ ||: |:||| |||| |||||:: || :|||||@LB@ CUG GUGUG CGUU CAAAGUG UC UAAAGG@LB@3'-UUU...CGUUU AU U AAGCAA AG CCC UACGA...GCA-5'@LB@ | |@LB@ 76 34@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -21.0703 kcal/mol@LB@Unfolding Energy - mRNA 6.16224 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 51 -- 95@LB@Position - sRNA 35 -- 75@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 48 -- 54@LB@ |
128 |
0.005802 |
0.1577 |
b2889 |
idi |
-10.08 |
0.237455 |
129 -- 166 |
33 -- 74 |
isopentenyl diphosphate isomerase |
|
_____________128________________________________________167\n_____________|__________________________________________|\n5'-CUC...UAAAC_______UU___UAA__A___________UUCAAUUA_____AAUGA...UCG-3'\n______________GCU_CAC__GGU___UC____UUUCACUC________UCUAU\n______________:||_|||__:|:___||____||||||||________||:||\n______________UGA_GUG__UCG___AG____AAAGUGAG________AGGUA\n3'-UUU...GUUUC___U___UG___UUA__CAAC________UCCCCUAA_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
147 -- 153 |
46 -- 52 |
-18.0124 kcal/mol |
3.11816 kcal/mol |
4.81602 kcal/mol |
128 167@LB@ | |@LB@5'-CUC...UAAAC UU UAA A UUCAAUUA AAUGA...UCG-3'@LB@ GCU CAC GGU UC UUUCACUC UCUAU@LB@ :|| ||| :|: || |||||||| ||:||@LB@ UGA GUG UCG AG AAAGUGAG AGGUA@LB@3'-UUU...GUUUC U UG UUA CAAC UCCCCUAA CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -18.0124 kcal/mol@LB@Unfolding Energy - mRNA 3.11816 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 129 -- 166@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 46 -- 52@LB@ |
190 |
0.009703 |
0.1776 |
b4125 |
dcuS |
-9.98 |
0.246838 |
251 -- 265 |
60 -- 75 |
sensory histidine kinase in two-component regulatory system with DcuR regulator of anaerobic fumarate respiration |
|
_____________250______________266\n_____________|________________|\n5'-UCC...AAAUU__G_____________CUUAA...UAU-3'\n______________GA_UAC_CACAGUGAU\n______________||_|||_|||||::||\n______________CU_AUG_GUGUCGUUA\n3'-UUU...CGUUU__G___U_________AGCAA...GCA-5'\n_____________|________________|\n_____________76_______________59\n |
259 -- 265 |
60 -- 66 |
-16.3548 kcal/mol |
3.08747 kcal/mol |
3.28851 kcal/mol |
250 266@LB@ | |@LB@5'-UCC...AAAUU G CUUAA...UAU-3'@LB@ GA UAC CACAGUGAU@LB@ || ||| |||||::||@LB@ CU AUG GUGUCGUUA@LB@3'-UUU...CGUUU G U AGCAA...GCA-5'@LB@ | |@LB@ 76 59@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -16.3548 kcal/mol@LB@Unfolding Energy - mRNA 3.08747 kcal/mol@LB@Unfolding Energy - sRNA 3.28851 kcal/mol@LB@@LB@Position - mRNA 251 -- 265@LB@Position - sRNA 60 -- 75@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 60 -- 66@LB@ |
178 |
0.008884 |
0.1747 |
b0051 |
rsmA |
-9.94 |
0.250586 |
2 -- 32 |
30 -- 58 |
16S rRNA m(6)A1518 m(6)A1519 dimethyltransferase SAM-dependent |
|
_____________1_______________________________33\n_____________|_______________________________|\n__________5'-G__A___AC___GA______UC__C_______AAAAU...UUA-3'\n______________CG_UGU__CAC__UCAGGG__UU_CCGUGCU\n______________||_|||__|||__||||||__||_||:||||\n______________GC_ACA__GUG__AGUCCC__AA_GGUACGA\n3'-UUU...GUUAA__A___AA___________CU__A_______AUAUU...GCA-5'\n_____________|_______________________________|\n_____________59______________________________29\n |
26 -- 32 |
30 -- 36 |
-26.3106 kcal/mol |
10.5715 kcal/mol |
5.79877 kcal/mol |
1 33@LB@ | |@LB@ 5'-G A AC GA UC C AAAAU...UUA-3'@LB@ CG UGU CAC UCAGGG UU CCGUGCU@LB@ || ||| ||| |||||| || ||:||||@LB@ GC ACA GUG AGUCCC AA GGUACGA@LB@3'-UUU...GUUAA A AA CU A AUAUU...GCA-5'@LB@ | |@LB@ 59 29@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -26.3106 kcal/mol@LB@Unfolding Energy - mRNA 10.5715 kcal/mol@LB@Unfolding Energy - sRNA 5.79877 kcal/mol@LB@@LB@Position - mRNA 2 -- 32@LB@Position - sRNA 30 -- 58@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 30 -- 36@LB@ |
142 |
0.006549 |
0.1605 |
b3902 |
rhaD |
-9.93 |
0.251242 |
192 -- 218 |
44 -- 69 |
rhamnulose-1-phosphate aldolase |
|
_____________191_________________________219\n_____________|___________________________|\n5'-AGA...CAGGA______AACAUGCAAAACA________UCCUG...UGA-3'\n______________ACACAG_____________UUACUCAG\n______________||||||_____________|:||||||\n______________UGUGUC_____________AGUGAGUC\n3'-UUU...UGAUG______GUUAAGCAACAA_________CCCUA...GCA-5'\n_____________|___________________________|\n_____________70__________________________43\n |
212 -- 218 |
44 -- 50 |
-16.231 kcal/mol |
2.20309 kcal/mol |
4.09554 kcal/mol |
191 219@LB@ | |@LB@5'-AGA...CAGGA AACAUGCAAAACA UCCUG...UGA-3'@LB@ ACACAG UUACUCAG@LB@ |||||| |:||||||@LB@ UGUGUC AGUGAGUC@LB@3'-UUU...UGAUG GUUAAGCAACAA CCCUA...GCA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -16.231 kcal/mol@LB@Unfolding Energy - mRNA 2.20309 kcal/mol@LB@Unfolding Energy - sRNA 4.09554 kcal/mol@LB@@LB@Position - mRNA 192 -- 218@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 44 -- 50@LB@ |
158 |
0.007677 |
0.1668 |
b1267 |
yciO |
-9.92 |
0.252655 |
228 -- 242 |
61 -- 75 |
putative RNA binding protein |
|
_____________227_____________243\n_____________|_______________|\n5'-GCG...AUCCU___A__C________CGUCU...CAA-3'\n______________GAU_AC_CACAGCAA\n______________||:_||_||||||||\n______________CUG_UG_GUGUCGUU\n3'-UUU...CGUUU___A__U________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
236 -- 242 |
61 -- 67 |
-14.6343 kcal/mol |
1.46218 kcal/mol |
3.25399 kcal/mol |
227 243@LB@ | |@LB@5'-GCG...AUCCU A C CGUCU...CAA-3'@LB@ GAU AC CACAGCAA@LB@ ||: || ||||||||@LB@ CUG UG GUGUCGUU@LB@3'-UUU...CGUUU A U AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -14.6343 kcal/mol@LB@Unfolding Energy - mRNA 1.46218 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 228 -- 242@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 61 -- 67@LB@ |
191 |
0.009733 |
0.1776 |
b0190 |
yaeQ |
-9.83 |
0.261410 |
113 -- 128 |
45 -- 75 |
PDDEXK superfamily protein |
|
_____________112_____________________________129\n_____________|_______________________________|\n5'-UAC...AAGGU_______________________________UUUCU...CUU-3'\n______________GACUAUAC_CA______________CACUCA\n______________|||||:||_||______________||||||\n______________CUGAUGUG_GU______________GUGAGU\n3'-UUU...CGUUU________U__CGUUAAGCAACAAA______CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
114 -- 120 |
68 -- 74 |
-15.3898 kcal/mol |
1.82074 kcal/mol |
3.74078 kcal/mol |
112 129@LB@ | |@LB@5'-UAC...AAGGU UUUCU...CUU-3'@LB@ GACUAUAC CA CACUCA@LB@ |||||:|| || ||||||@LB@ CUGAUGUG GU GUGAGU@LB@3'-UUU...CGUUU U CGUUAAGCAACAAA CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -15.3898 kcal/mol@LB@Unfolding Energy - mRNA 1.82074 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 68 -- 74@LB@ |
85 |
0.003677 |
0.1509 |
b0813 |
rhtA |
-9.71 |
0.273689 |
106 -- 123 |
34 -- 46 |
threonine and homoserine efflux system |
|
_____________105________________124\n_____________|__________________|\n5'-CAG...CAAAA_______AAAUU______ACAAA...CAC-3'\n______________CGGGGGA_____UUUUCA\n______________|:|||||_____|||:||\n______________GUCCCCU_____AAAGGU\n3'-UUU...AGUGA__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________47_________________33\n |
106 -- 112 |
40 -- 46 |
-14.6812 kcal/mol |
3.4305 kcal/mol |
1.54427 kcal/mol |
105 124@LB@ | |@LB@5'-CAG...CAAAA AAAUU ACAAA...CAC-3'@LB@ CGGGGGA UUUUCA@LB@ |:||||| |||:||@LB@ GUCCCCU AAAGGU@LB@3'-UUU...AGUGA ACGAA...GCA-5'@LB@ | |@LB@ 47 33@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -14.6812 kcal/mol@LB@Unfolding Energy - mRNA 3.4305 kcal/mol@LB@Unfolding Energy - sRNA 1.54427 kcal/mol@LB@@LB@Position - mRNA 106 -- 123@LB@Position - sRNA 34 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 40 -- 46@LB@ |
77 |
0.003184 |
0.1452 |
b4406 |
yaeP |
-9.70 |
0.274250 |
222 -- 254 |
40 -- 71 |
UPF0253 family protein |
|
_____________221________________________________255\n_____________|__________________________________|\n5'-ACC...AGUUA_______A_____A__CG_AAA________C___GACUU...UGC-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
222 -- 228 |
65 -- 71 |
-25.8836 kcal/mol |
11.435 kcal/mol |
4.74818 kcal/mol |
221 255@LB@ | |@LB@5'-ACC...AGUUA A A CG AAA C GACUU...UGC-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -25.8836 kcal/mol@LB@Unfolding Energy - mRNA 11.435 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 222 -- 254@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 65 -- 71@LB@ |
164 |
0.007775 |
0.1668 |
b2097 |
fbaB |
-9.67 |
0.277966 |
247 -- 265 |
48 -- 68 |
fructose-bisphosphate aldolase class I |
|
_____________246___________________266\n_____________|_____________________|\n5'-AAU...CCUUU_______C________A_G__AAUUC...AUG-3'\n______________UACAGCA___CGUUGU_U_AC\n______________:||||||___||||||_|_||\n______________GUGUCGU___GCAACA_A_UG\n3'-UUU...GAUGU_______UAA______A_G__AGUCC...GCA-5'\n_____________|_____________________|\n_____________69____________________47\n |
247 -- 253 |
62 -- 68 |
-18.0796 kcal/mol |
4.78239 kcal/mol |
3.63277 kcal/mol |
246 266@LB@ | |@LB@5'-AAU...CCUUU C A G AAUUC...AUG-3'@LB@ UACAGCA CGUUGU U AC@LB@ :|||||| |||||| | ||@LB@ GUGUCGU GCAACA A UG@LB@3'-UUU...GAUGU UAA A G AGUCC...GCA-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -18.0796 kcal/mol@LB@Unfolding Energy - mRNA 4.78239 kcal/mol@LB@Unfolding Energy - sRNA 3.63277 kcal/mol@LB@@LB@Position - mRNA 247 -- 265@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 62 -- 68@LB@ |
113 |
0.004991 |
0.1545 |
b0888 |
trxB |
-9.59 |
0.285839 |
209 -- 223 |
61 -- 75 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________208_____________224\n_____________|_______________|\n5'-AAC...GGCAC___CAA_________ACUGC...UGC-3'\n______________GAC___ACACAGUAA\n______________|||___||||||:||\n______________CUG___UGUGUCGUU\n3'-UUU...CGUUU___AUG_________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
217 -- 223 |
61 -- 67 |
-15.4977 kcal/mol |
2.65453 kcal/mol |
3.25399 kcal/mol |
208 224@LB@ | |@LB@5'-AAC...GGCAC CAA ACUGC...UGC-3'@LB@ GAC ACACAGUAA@LB@ ||| ||||||:||@LB@ CUG UGUGUCGUU@LB@3'-UUU...CGUUU AUG AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -15.4977 kcal/mol@LB@Unfolding Energy - mRNA 2.65453 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 209 -- 223@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 61 -- 67@LB@ |
162 |
0.007731 |
0.1668 |
b4202 |
rpsR |
-9.58 |
0.287294 |
60 -- 77 |
62 -- 76 |
30S ribosomal subunit protein S18 |
|
_____________59_________________78\n_____________|__________________|\n5'-CGG...AAACC____CAU___U_______UAACG...UCA-3'\n______________AGGC___UAC_CACAGUA\n______________||:|___|||_|||||:|\n______________UCUG___AUG_GUGUCGU\n3'-UUU...CCGUU__________U_______UAAGC...GCA-5'\n_____________|__________________|\n_____________77_________________61\n |
71 -- 77 |
62 -- 68 |
-14.2281 kcal/mol |
1.39912 kcal/mol |
3.25371 kcal/mol |
59 78@LB@ | |@LB@5'-CGG...AAACC CAU U UAACG...UCA-3'@LB@ AGGC UAC CACAGUA@LB@ ||:| ||| |||||:|@LB@ UCUG AUG GUGUCGU@LB@3'-UUU...CCGUU U UAAGC...GCA-5'@LB@ | |@LB@ 77 61@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.2281 kcal/mol@LB@Unfolding Energy - mRNA 1.39912 kcal/mol@LB@Unfolding Energy - sRNA 3.25371 kcal/mol@LB@@LB@Position - mRNA 60 -- 77@LB@Position - sRNA 62 -- 76@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 62 -- 68@LB@ |
148 |
0.006951 |
0.1638 |
b3995 |
rsd |
-9.56 |
0.289012 |
16 -- 28 |
58 -- 70 |
stationary phase protein binds sigma 70 RNA polymerase subunit |
|
_____________15____________29\n_____________|_____________|\n5'-AAU...UUCGC_____________UCCCU...ACU-3'\n______________CAUAUGGCAAUUC\n______________||:|::|||||||\n______________GUGUGUCGUUAAG\n3'-UUU...CUGAU_____________CAACA...GCA-5'\n_____________|_____________|\n_____________71____________57\n |
22 -- 28 |
58 -- 64 |
-15.8606 kcal/mol |
3.09015 kcal/mol |
3.21169 kcal/mol |
15 29@LB@ | |@LB@5'-AAU...UUCGC UCCCU...ACU-3'@LB@ CAUAUGGCAAUUC@LB@ ||:|::|||||||@LB@ GUGUGUCGUUAAG@LB@3'-UUU...CUGAU CAACA...GCA-5'@LB@ | |@LB@ 71 57@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -15.8606 kcal/mol@LB@Unfolding Energy - mRNA 3.09015 kcal/mol@LB@Unfolding Energy - sRNA 3.21169 kcal/mol@LB@@LB@Position - mRNA 16 -- 28@LB@Position - sRNA 58 -- 70@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 58 -- 64@LB@ |
48 |
0.001595 |
0.1153 |
b4567 |
yjjZ |
-9.54 |
0.291590 |
92 -- 131 |
37 -- 74 |
uncharacterized protein |
|
_____________91_______________________________________132\n_____________|________________________________________|\n5'-CGG...UGAUU____AU_________AG___UACC__AUAG__A_______AUCUG...GGA-3'\n______________GCUA__CAUAGCGAU__GUU____CG____CA_GGGAUUU\n______________:|||__||:|||:||__|||____|:____||_|||||||\n______________UGAU__GUGUCGUUA__CAA____GU____GU_CCCUAAA\n3'-UUU...GUUUC____GU_________AG___CAAA__GA____C_______GGUAC...GCA-5'\n_____________|________________________________________|\n_____________75_______________________________________36\n |
125 -- 131 |
37 -- 43 |
-26.8907 kcal/mol |
12.5776 kcal/mol |
4.77887 kcal/mol |
91 132@LB@ | |@LB@5'-CGG...UGAUU AU AG UACC AUAG A AUCUG...GGA-3'@LB@ GCUA CAUAGCGAU GUU CG CA GGGAUUU@LB@ :||| ||:|||:|| ||| |: || |||||||@LB@ UGAU GUGUCGUUA CAA GU GU CCCUAAA@LB@3'-UUU...GUUUC GU AG CAAA GA C GGUAC...GCA-5'@LB@ | |@LB@ 75 36@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -26.8907 kcal/mol@LB@Unfolding Energy - mRNA 12.5776 kcal/mol@LB@Unfolding Energy - sRNA 4.77887 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 37 -- 74@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 37 -- 43@LB@ |
167 |
0.008121 |
0.1711 |
b2603 |
yfiR |
-9.52 |
0.293133 |
262 -- 278 |
35 -- 51 |
putative periplasmic inhibitor of YfiN activity |
|
_____________261_______________279\n_____________|_________________|\n5'-GUA...AAUAC_________A_CC____GACGU...GUA-3'\n______________UCGCUCAGG_G__UUCU\n______________||:||||||_|__|||:\n______________AGUGAGUCC_C__AAGG\n3'-UUU...AACAA_________C_UA____UACGA...GCA-5'\n_____________|_________________|\n_____________52________________34\n |
264 -- 270 |
43 -- 49 |
-18.1931 kcal/mol |
6.80204 kcal/mol |
1.87111 kcal/mol |
261 279@LB@ | |@LB@5'-GUA...AAUAC A CC GACGU...GUA-3'@LB@ UCGCUCAGG G UUCU@LB@ ||:|||||| | |||:@LB@ AGUGAGUCC C AAGG@LB@3'-UUU...AACAA C UA UACGA...GCA-5'@LB@ | |@LB@ 52 34@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -18.1931 kcal/mol@LB@Unfolding Energy - mRNA 6.80204 kcal/mol@LB@Unfolding Energy - sRNA 1.87111 kcal/mol@LB@@LB@Position - mRNA 262 -- 278@LB@Position - sRNA 35 -- 51@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 43 -- 49@LB@ |
150 |
0.006982 |
0.1638 |
b3581 |
sgbH |
-9.48 |
0.297019 |
138 -- 176 |
34 -- 74 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________137________________________________________177\n_____________|__________________________________________|\n5'-UUU...UAUCA__GU_________UC__A___CCG__C_______C_______CGCCC...AAG-3'\n______________AC__UAU_CAGCA__UC_UUG___CA_UUCAGGG___UUUCA\n______________||__:|:_|||||__||_|||___||_:||||||___||:||\n______________UG__GUG_GUCGU__AG_AAC___GU_GAGUCCC___AAGGU\n3'-UUU...GUUUC__AU___U_____UA__C___AAA__________CUA_____ACGAA...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________33\n |
164 -- 170 |
42 -- 48 |
-24.4875 kcal/mol |
10.188 kcal/mol |
4.81599 kcal/mol |
137 177@LB@ | |@LB@5'-UUU...UAUCA GU UC A CCG C C CGCCC...AAG-3'@LB@ AC UAU CAGCA UC UUG CA UUCAGGG UUUCA@LB@ || :|: ||||| || ||| || :|||||| ||:||@LB@ UG GUG GUCGU AG AAC GU GAGUCCC AAGGU@LB@3'-UUU...GUUUC AU U UA C AAA CUA ACGAA...GCA-5'@LB@ | |@LB@ 75 33@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -24.4875 kcal/mol@LB@Unfolding Energy - mRNA 10.188 kcal/mol@LB@Unfolding Energy - sRNA 4.81599 kcal/mol@LB@@LB@Position - mRNA 138 -- 176@LB@Position - sRNA 34 -- 74@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 42 -- 48@LB@ |
107 |
0.004745 |
0.1538 |
b2413 |
cysZ |
-9.47 |
0.298503 |
222 -- 238 |
58 -- 74 |
sulfate transporter sulfite inhibited |
|
_____________221_______________239\n_____________|_________________|\n5'-ACC...CAUCU__CC_____________UUACU...UUU-3'\n______________GC__CACGCAGCGGUUU\n______________:|__|||:||||::||:\n______________UG__GUGUGUCGUUAAG\n3'-UUU...GUUUC__AU_____________CAACA...GCA-5'\n_____________|_________________|\n_____________75________________57\n |
232 -- 238 |
58 -- 64 |
-18.5455 kcal/mol |
5.77464 kcal/mol |
3.3008 kcal/mol |
221 239@LB@ | |@LB@5'-ACC...CAUCU CC UUACU...UUU-3'@LB@ GC CACGCAGCGGUUU@LB@ :| |||:||||::||:@LB@ UG GUGUGUCGUUAAG@LB@3'-UUU...GUUUC AU CAACA...GCA-5'@LB@ | |@LB@ 75 57@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -18.5455 kcal/mol@LB@Unfolding Energy - mRNA 5.77464 kcal/mol@LB@Unfolding Energy - sRNA 3.3008 kcal/mol@LB@@LB@Position - mRNA 222 -- 238@LB@Position - sRNA 58 -- 74@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 58 -- 64@LB@ |
151 |
0.007209 |
0.1668 |
b0968 |
yccX |
-9.35 |
0.311742 |
266 -- 274 |
62 -- 70 |
weak acylphosphatase |
|
_____________265_______275\n_____________|_________|\n5'-GGC...UACAC_________CGAAG...CCG-3'\n______________CACACAGUA\n______________|||||||:|\n______________GUGUGUCGU\n3'-UUU...CUGAU_________UAAGC...GCA-5'\n_____________|_________|\n_____________71________61\n |
268 -- 274 |
62 -- 68 |
-13.335 kcal/mol |
0.836274 kcal/mol |
3.14945 kcal/mol |
265 275@LB@ | |@LB@5'-GGC...UACAC CGAAG...CCG-3'@LB@ CACACAGUA@LB@ |||||||:|@LB@ GUGUGUCGU@LB@3'-UUU...CUGAU UAAGC...GCA-5'@LB@ | |@LB@ 71 61@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -13.335 kcal/mol@LB@Unfolding Energy - mRNA 0.836274 kcal/mol@LB@Unfolding Energy - sRNA 3.14945 kcal/mol@LB@@LB@Position - mRNA 266 -- 274@LB@Position - sRNA 62 -- 70@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 62 -- 68@LB@ |
177 |
0.008834 |
0.1747 |
b0932 |
pepN |
-9.31 |
0.316043 |
123 -- 145 |
58 -- 78 |
aminopeptidase N |
|
_____________122_____________________146\n_____________|_______________________|\n5'-GUA...AAGAU_____UU_______GC_______ACGCA...AGA-3'\n______________GAAGA__CUGCAUA__GCGAUUU\n______________:||||__||:||:|__||:|||:\n______________UUUCU__GAUGUGU__CGUUAAG\n3'-UUU...ACCCG______________GU_______CAACA...GCA-5'\n_____________|_______________________|\n_____________79______________________57\n |
139 -- 145 |
58 -- 64 |
-18.0038 kcal/mol |
5.38317 kcal/mol |
3.31018 kcal/mol |
122 146@LB@ | |@LB@5'-GUA...AAGAU UU GC ACGCA...AGA-3'@LB@ GAAGA CUGCAUA GCGAUUU@LB@ :|||| ||:||:| ||:|||:@LB@ UUUCU GAUGUGU CGUUAAG@LB@3'-UUU...ACCCG GU CAACA...GCA-5'@LB@ | |@LB@ 79 57@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -18.0038 kcal/mol@LB@Unfolding Energy - mRNA 5.38317 kcal/mol@LB@Unfolding Energy - sRNA 3.31018 kcal/mol@LB@@LB@Position - mRNA 123 -- 145@LB@Position - sRNA 58 -- 78@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 58 -- 64@LB@ |
109 |
0.004772 |
0.1538 |
b2580 |
ung |
-9.28 |
0.319241 |
25 -- 55 |
36 -- 70 |
uracil-DNA-glycosylase |
|
_____________24__________________________________56\n_____________|___________________________________|\n5'-UCU...AAAAC______U___GUA____G_____AAAU________AUUGU...CCG-3'\n______________CACACA_CAA_____UG__UCGC_____GGAUUUU\n______________||||||_|||_____||__||:|_____||||||:\n______________GUGUGU_GUU_____AC__AGUG_____CCUAAAG\n3'-UUU...CUGAU______C___AAGCA__AA____AGUCC_______GUACG...GCA-5'\n_____________|___________________________________|\n_____________71__________________________________35\n |
49 -- 55 |
36 -- 42 |
-19.0861 kcal/mol |
5.04532 kcal/mol |
4.7591 kcal/mol |
24 56@LB@ | |@LB@5'-UCU...AAAAC U GUA G AAAU AUUGU...CCG-3'@LB@ CACACA CAA UG UCGC GGAUUUU@LB@ |||||| ||| || ||:| ||||||:@LB@ GUGUGU GUU AC AGUG CCUAAAG@LB@3'-UUU...CUGAU C AAGCA AA AGUCC GUACG...GCA-5'@LB@ | |@LB@ 71 35@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -19.0861 kcal/mol@LB@Unfolding Energy - mRNA 5.04532 kcal/mol@LB@Unfolding Energy - sRNA 4.7591 kcal/mol@LB@@LB@Position - mRNA 25 -- 55@LB@Position - sRNA 36 -- 70@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 36 -- 42@LB@ |
166 |
0.008074 |
0.1711 |
b2158 |
yeiH |
-9.26 |
0.321503 |
233 -- 257 |
41 -- 72 |
UPF0324 family inner membrane protein |
|
_____________232_______________________________258\n_____________|_________________________________|\n5'-CAC...CAUCG_____UG_____________________C____UUAGC...GUG-3'\n______________UACAC__UGGCA________UUUUAUUC_GGGG\n______________|||||__::|||________|||:|:||_||||\n______________AUGUG__GUCGU________AAAGUGAG_CCCC\n3'-UUU...UUCUG_____U______UAAGCAAC________U____UAAAG...GCA-5'\n_____________|_________________________________|\n_____________73________________________________40\n |
246 -- 252 |
46 -- 52 |
-21.8619 kcal/mol |
7.84401 kcal/mol |
4.75632 kcal/mol |
232 258@LB@ | |@LB@5'-CAC...CAUCG UG C UUAGC...GUG-3'@LB@ UACAC UGGCA UUUUAUUC GGGG@LB@ ||||| ::||| |||:|:|| ||||@LB@ AUGUG GUCGU AAAGUGAG CCCC@LB@3'-UUU...UUCUG U UAAGCAAC U UAAAG...GCA-5'@LB@ | |@LB@ 73 40@LB@@LB@@LB@Energy -9.26 kcal/mol@LB@Hybridization Energy -21.8619 kcal/mol@LB@Unfolding Energy - mRNA 7.84401 kcal/mol@LB@Unfolding Energy - sRNA 4.75632 kcal/mol@LB@@LB@Position - mRNA 233 -- 257@LB@Position - sRNA 41 -- 72@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 46 -- 52@LB@ |
155 |
0.007577 |
0.1668 |
b4364 |
yjjP |
-9.15 |
0.334468 |
166 -- 178 |
62 -- 74 |
DUF1212 family inner membrane protein |
|
_____________165___________179\n_____________|_____________|\n5'-UCA...UCUGA__A__________CGUCU...UUU-3'\n______________AC_AUACGCAGCA\n______________||_|:||:|||||\n______________UG_UGUGUGUCGU\n3'-UUU...GUUUC__A__________UAAGC...GCA-5'\n_____________|_____________|\n_____________75____________61\n |
172 -- 178 |
62 -- 68 |
-14.8746 kcal/mol |
2.48219 kcal/mol |
3.24359 kcal/mol |
165 179@LB@ | |@LB@5'-UCA...UCUGA A CGUCU...UUU-3'@LB@ AC AUACGCAGCA@LB@ || |:||:|||||@LB@ UG UGUGUGUCGU@LB@3'-UUU...GUUUC A UAAGC...GCA-5'@LB@ | |@LB@ 75 61@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -14.8746 kcal/mol@LB@Unfolding Energy - mRNA 2.48219 kcal/mol@LB@Unfolding Energy - sRNA 3.24359 kcal/mol@LB@@LB@Position - mRNA 166 -- 178@LB@Position - sRNA 62 -- 74@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 62 -- 68@LB@ |
117 |
0.005152 |
0.155 |
b2235 |
nrdB |
-9.05 |
0.346139 |
190 -- 222 |
48 -- 77 |
ribonucleoside-diphosphate reductase 1 beta subunit ferritin-like protein |
|
_____________189_______________________________223\n_____________|_________________________________|\n5'-UCC...CCAAC_____AC__U_______UAUACCACCU______AGACG...AAU-3'\n______________AGGAC__AC_CAUGGCA__________UUUCAC\n______________|:|||__||_||::|||__________||||||\n______________UUCUG__UG_GUGUCGU__________AAAGUG\n3'-UUU...CCCGU_____A___U_______UAAGCAAC________AGUCC...GCA-5'\n_____________|_________________________________|\n_____________78________________________________47\n |
200 -- 206 |
62 -- 68 |
-18.188 kcal/mol |
5.45206 kcal/mol |
3.68729 kcal/mol |
189 223@LB@ | |@LB@5'-UCC...CCAAC AC U UAUACCACCU AGACG...AAU-3'@LB@ AGGAC AC CAUGGCA UUUCAC@LB@ |:||| || ||::||| ||||||@LB@ UUCUG UG GUGUCGU AAAGUG@LB@3'-UUU...CCCGU A U UAAGCAAC AGUCC...GCA-5'@LB@ | |@LB@ 78 47@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -18.188 kcal/mol@LB@Unfolding Energy - mRNA 5.45206 kcal/mol@LB@Unfolding Energy - sRNA 3.68729 kcal/mol@LB@@LB@Position - mRNA 190 -- 222@LB@Position - sRNA 48 -- 77@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 62 -- 68@LB@ |
118 |
0.005291 |
0.1553 |
b0481 |
ybaK |
-9.02 |
0.349126 |
203 -- 225 |
45 -- 75 |
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase |
|
_____________202_____________________________226\n_____________|_______________________________|\n5'-AAU...ACCAU______C______UAAA______________AAAAA...UCG-3'\n______________GAC_AC_CGCAGU___________UUACUCG\n______________|||_||_|:|||:___________|:||||:\n______________CUG_UG_GUGUCG___________AGUGAGU\n3'-UUU...CGUUU___A__U______UUAAGCAACAA_______CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
219 -- 225 |
45 -- 51 |
-15.8984 kcal/mol |
3.13427 kcal/mol |
3.74078 kcal/mol |
202 226@LB@ | |@LB@5'-AAU...ACCAU C UAAA AAAAA...UCG-3'@LB@ GAC AC CGCAGU UUACUCG@LB@ ||| || |:|||: |:||||:@LB@ CUG UG GUGUCG AGUGAGU@LB@3'-UUU...CGUUU A U UUAAGCAACAA CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.8984 kcal/mol@LB@Unfolding Energy - mRNA 3.13427 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 203 -- 225@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 45 -- 51@LB@ |
133 |
0.006126 |
0.1605 |
b0387 |
yaiI |
-9.01 |
0.350598 |
46 -- 81 |
33 -- 74 |
UPF0178 family protein |
|
_____________45_________________________________________82\n_____________|__________________________________________|\n5'-CAC...CCCAU____________CAAUAAAACCG______UCU__________UGCCU...CAA-3'\n______________AUUGC_CGCAGC_____________AUUU______UUUCCAU\n______________|:|:|_|:||||_____________|:|:______|||||||\n______________UGAUG_GUGUCG_____________UGAG______AAAGGUA\n3'-UUU...GUUUC_____U______UUAAGCAACAAAG____UCCCCU_______CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
75 -- 81 |
33 -- 39 |
-16.9561 kcal/mol |
3.12923 kcal/mol |
4.81602 kcal/mol |
45 82@LB@ | |@LB@5'-CAC...CCCAU CAAUAAAACCG UCU UGCCU...CAA-3'@LB@ AUUGC CGCAGC AUUU UUUCCAU@LB@ |:|:| |:|||| |:|: |||||||@LB@ UGAUG GUGUCG UGAG AAAGGUA@LB@3'-UUU...GUUUC U UUAAGCAACAAAG UCCCCU CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -16.9561 kcal/mol@LB@Unfolding Energy - mRNA 3.12923 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 46 -- 81@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 33 -- 39@LB@ |
76 |
0.003141 |
0.1452 |
b0187 |
yaeR |
-8.98 |
0.354982 |
261 -- 292 |
48 -- 78 |
putative lyase |
|
_____________260_______________________________293\n_____________|_________________________________|\n5'-AAA...UGAGC_______UUC___U_____AU__UUG_______GCUGCAAA-3'\n______________AAAG_CU___UAC_GCGAU__UC___GUUUCAC\n______________||||_||___:||_||:||__||___|||||||\n______________UUUC_GA___GUG_CGUUA__AG___CAAAGUG\n3'-UUU...ACCCG____U__UGU___U_________CAA_______AGUCC...GCA-5'\n_____________|_________________________________|\n_____________79________________________________47\n |
286 -- 292 |
48 -- 54 |
-17.4111 kcal/mol |
4.74942 kcal/mol |
3.68736 kcal/mol |
260 293@LB@ | |@LB@5'-AAA...UGAGC UUC U AU UUG GCUGCAAA-3'@LB@ AAAG CU UAC GCGAU UC GUUUCAC@LB@ |||| || :|| ||:|| || |||||||@LB@ UUUC GA GUG CGUUA AG CAAAGUG@LB@3'-UUU...ACCCG U UGU U CAA AGUCC...GCA-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -17.4111 kcal/mol@LB@Unfolding Energy - mRNA 4.74942 kcal/mol@LB@Unfolding Energy - sRNA 3.68736 kcal/mol@LB@@LB@Position - mRNA 261 -- 292@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 48 -- 54@LB@ |
196 |
0.01003 |
0.1776 |
b0344 |
lacZ |
-8.86 |
0.369200 |
215 -- 237 |
48 -- 76 |
beta-D-galactosidase |
|
_____________214___________________________238\n_____________|_____________________________|\n5'-ACC...AUUAC_____________________C_______AACGU...CUU-3'\n______________GGAUU_CAC_UGGC____CGU_GUUUUAC\n______________:||:|_|||_::||____|||_||||:||\n______________UCUGA_GUG_GUCG____GCA_CAAAGUG\n3'-UUU...CCGUU_____U___U____UUAA___A_______AGUCC...GCA-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
231 -- 237 |
48 -- 54 |
-17.9156 kcal/mol |
5.37156 kcal/mol |
3.68714 kcal/mol |
214 238@LB@ | |@LB@5'-ACC...AUUAC C AACGU...CUU-3'@LB@ GGAUU CAC UGGC CGU GUUUUAC@LB@ :||:| ||| ::|| ||| ||||:||@LB@ UCUGA GUG GUCG GCA CAAAGUG@LB@3'-UUU...CCGUU U U UUAA A AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -17.9156 kcal/mol@LB@Unfolding Energy - mRNA 5.37156 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 215 -- 237@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 48 -- 54@LB@ |
116 |
0.005119 |
0.155 |
b2513 |
yfgM |
-8.84 |
0.371642 |
84 -- 101 |
60 -- 75 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________83_________________102\n_____________|__________________|\n5'-GGC...GAAGU_____ACG__________AGUGA...UUG-3'\n______________GGCUA___GCACAGCAGU\n______________|:|||___:|||||||:|\n______________CUGAU___UGUGUCGUUA\n3'-UUU...CGUUU_____G____________AGCAA...GCA-5'\n_____________|__________________|\n_____________76_________________59\n |
95 -- 101 |
60 -- 66 |
-19.484 kcal/mol |
7.35825 kcal/mol |
3.28851 kcal/mol |
83 102@LB@ | |@LB@5'-GGC...GAAGU ACG AGUGA...UUG-3'@LB@ GGCUA GCACAGCAGU@LB@ |:||| :|||||||:|@LB@ CUGAU UGUGUCGUUA@LB@3'-UUU...CGUUU G AGCAA...GCA-5'@LB@ | |@LB@ 76 59@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -19.484 kcal/mol@LB@Unfolding Energy - mRNA 7.35825 kcal/mol@LB@Unfolding Energy - sRNA 3.28851 kcal/mol@LB@@LB@Position - mRNA 84 -- 101@LB@Position - sRNA 60 -- 75@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 60 -- 66@LB@ |
124 |
0.005471 |
0.1553 |
b1249 |
clsA |
-8.47 |
0.418250 |
164 -- 196 |
34 -- 71 |
cardiolipin synthase 1 |
|
_____________163____________________________________197\n_____________|______________________________________|\n5'-GUC...CGUAA__U____A____G__C_______AAA____________AUCUA...CAG-3'\n______________AC_CAUA_CAAU_CG___UUUCA______GGAUUUCUA\n______________||_||:|_||||_||___|||||______|||||||:|\n______________UG_GUGU_GUUA_GC___AAAGU______CCUAAAGGU\n3'-UUU...UCUGA__U____C____A__AAC_____GAGUCC_________ACGAA...GCA-5'\n_____________|______________________________________|\n_____________72_____________________________________33\n |
190 -- 196 |
34 -- 40 |
-20.3655 kcal/mol |
7.10457 kcal/mol |
4.79237 kcal/mol |
163 197@LB@ | |@LB@5'-GUC...CGUAA U A G C AAA AUCUA...CAG-3'@LB@ AC CAUA CAAU CG UUUCA GGAUUUCUA@LB@ || ||:| |||| || ||||| |||||||:|@LB@ UG GUGU GUUA GC AAAGU CCUAAAGGU@LB@3'-UUU...UCUGA U C A AAC GAGUCC ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -20.3655 kcal/mol@LB@Unfolding Energy - mRNA 7.10457 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 164 -- 196@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 34 -- 40@LB@ |
149 |
0.006962 |
0.1638 |
b0935 |
ssuD |
-8.45 |
0.421381 |
102 -- 123 |
48 -- 71 |
alkanesulfonate monooxygenase FMNH(2)-dependent |
|
_____________101______________________124\n_____________|________________________|\n5'-AAA...CAGCA___A_______A____________GAAAA...AAC-3'\n______________GCA_ACGGCAG_UC__UGUUUUAU\n______________:||_||:|||:_||__|||||:|:\n______________UGU_UGUCGUU_AG__ACAAAGUG\n3'-UUU...UCUGA___G_______A__CA________AGUCC...GCA-5'\n_____________|________________________|\n_____________72_______________________47\n |
117 -- 123 |
48 -- 54 |
-17.2917 kcal/mol |
5.19453 kcal/mol |
3.65243 kcal/mol |
101 124@LB@ | |@LB@5'-AAA...CAGCA A A GAAAA...AAC-3'@LB@ GCA ACGGCAG UC UGUUUUAU@LB@ :|| ||:|||: || |||||:|:@LB@ UGU UGUCGUU AG ACAAAGUG@LB@3'-UUU...UCUGA G A CA AGUCC...GCA-5'@LB@ | |@LB@ 72 47@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -17.2917 kcal/mol@LB@Unfolding Energy - mRNA 5.19453 kcal/mol@LB@Unfolding Energy - sRNA 3.65243 kcal/mol@LB@@LB@Position - mRNA 102 -- 123@LB@Position - sRNA 48 -- 71@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 48 -- 54@LB@ |
197 |
0.01006 |
0.1776 |
b0069 |
sgrR |
-8.41 |
0.425671 |
7 -- 22 |
58 -- 74 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
_____________6_________________23\n_____________|_________________|\n_____5'-CAUCCC____________CC___AAGCA...UGA-3'\n______________ACUGCAU_CAGU__UUC\n______________|||:||:_|||:__|||\n______________UGAUGUG_GUCG__AAG\n3'-UUU...GUUUC_______U____UU___CAACA...GCA-5'\n_____________|_________________|\n_____________75________________57\n |
7 -- 13 |
68 -- 74 |
-13.3461 kcal/mol |
1.63335 kcal/mol |
3.3008 kcal/mol |
6 23@LB@ | |@LB@ 5'-CAUCCC CC AAGCA...UGA-3'@LB@ ACUGCAU CAGU UUC@LB@ |||:||: |||: |||@LB@ UGAUGUG GUCG AAG@LB@3'-UUU...GUUUC U UU CAACA...GCA-5'@LB@ | |@LB@ 75 57@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -13.3461 kcal/mol@LB@Unfolding Energy - mRNA 1.63335 kcal/mol@LB@Unfolding Energy - sRNA 3.3008 kcal/mol@LB@@LB@Position - mRNA 7 -- 22@LB@Position - sRNA 58 -- 74@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 68 -- 74@LB@ |
94 |
0.004209 |
0.1538 |
b1798 |
leuE |
-8.23 |
0.450453 |
21 -- 61 |
47 -- 73 |
leucine efflux protein |
|
_____________20_________________________________________62\n_____________|__________________________________________|\n5'-UGC...AAUUU____________U____CC_AGCACUACCCGAAUU_______GGAGC...AAA-3'\n______________UUACGC_CAGUA_UUUG__G_______________UUUCACU\n______________:|||:|_|||:|_||:|__|_______________|||||||\n______________GAUGUG_GUCGU_AAGC__C_______________AAAGUGA\n3'-UUU...UUUCU______U_____U____AA_______________________GUCCC...GCA-5'\n_____________|__________________________________________|\n_____________74_________________________________________46\n |
55 -- 61 |
47 -- 53 |
-16.3548 kcal/mol |
4.43937 kcal/mol |
3.69006 kcal/mol |
20 62@LB@ | |@LB@5'-UGC...AAUUU U CC AGCACUACCCGAAUU GGAGC...AAA-3'@LB@ UUACGC CAGUA UUUG G UUUCACU@LB@ :|||:| |||:| ||:| | |||||||@LB@ GAUGUG GUCGU AAGC C AAAGUGA@LB@3'-UUU...UUUCU U U AA GUCCC...GCA-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -8.23 kcal/mol@LB@Hybridization Energy -16.3548 kcal/mol@LB@Unfolding Energy - mRNA 4.43937 kcal/mol@LB@Unfolding Energy - sRNA 3.69006 kcal/mol@LB@@LB@Position - mRNA 21 -- 61@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 47 -- 53@LB@ |
58 |
0.002015 |
0.1223 |
b0189 |
rof |
-8.06 |
0.473679 |
29 -- 61 |
40 -- 71 |
modulator of Rho-dependent transcription termination |
|
_____________28_________________________________62\n_____________|__________________________________|\n5'-AGG...AGUUA_______A_____A__CG_AAA________C___GACUU...GCG-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
29 -- 35 |
65 -- 71 |
-25.5885 kcal/mol |
12.7864 kcal/mol |
4.74818 kcal/mol |
28 62@LB@ | |@LB@5'-AGG...AGUUA A A CG AAA C GACUU...GCG-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -25.5885 kcal/mol@LB@Unfolding Energy - mRNA 12.7864 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 29 -- 61@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 65 -- 71@LB@ |
100 |
0.004525 |
0.1538 |
b2550 |
yphH |
-8.03 |
0.477033 |
31 -- 47 |
39 -- 54 |
putative DNA-binding transcriptional regulator |
|
_____________30_________________48\n_____________|__________________|\n5'-AGG...GCCCG_______A___UC_____CUCAA...UGG-3'\n______________GUUUCAU__GG__GGGAU\n______________||||||:__:|__|||||\n______________CAAAGUG__UC__CCCUA\n3'-UUU...AGCAA_______AG_________AAGGU...GCA-5'\n_____________|__________________|\n_____________55_________________38\n |
31 -- 37 |
48 -- 54 |
-12.873 kcal/mol |
2.94673 kcal/mol |
1.89674 kcal/mol |
30 48@LB@ | |@LB@5'-AGG...GCCCG A UC CUCAA...UGG-3'@LB@ GUUUCAU GG GGGAU@LB@ ||||||: :| |||||@LB@ CAAAGUG UC CCCUA@LB@3'-UUU...AGCAA AG AAGGU...GCA-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -8.03 kcal/mol@LB@Hybridization Energy -12.873 kcal/mol@LB@Unfolding Energy - mRNA 2.94673 kcal/mol@LB@Unfolding Energy - sRNA 1.89674 kcal/mol@LB@@LB@Position - mRNA 31 -- 47@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 48 -- 54@LB@ |
194 |
0.009812 |
0.1776 |
b2687 |
luxS |
-7.90 |
0.495572 |
99 -- 106 |
42 -- 49 |
S-ribosylhomocysteine lyase |
|
_____________98_______107\n_____________|________|\n5'-GAA...UCUGA________AUGAU...UCA-3'\n______________AUUCAGGG\n______________|:||||||\n______________UGAGUCCC\n3'-UUU...CAAAG________CUAAA...GCA-5'\n_____________|________|\n_____________50_______41\n |
100 -- 106 |
42 -- 48 |
-12.5942 kcal/mol |
3.05922 kcal/mol |
1.63991 kcal/mol |
98 107@LB@ | |@LB@5'-GAA...UCUGA AUGAU...UCA-3'@LB@ AUUCAGGG@LB@ |:||||||@LB@ UGAGUCCC@LB@3'-UUU...CAAAG CUAAA...GCA-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -12.5942 kcal/mol@LB@Unfolding Energy - mRNA 3.05922 kcal/mol@LB@Unfolding Energy - sRNA 1.63991 kcal/mol@LB@@LB@Position - mRNA 99 -- 106@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 42 -- 48@LB@ |
121 |
0.005439 |
0.1553 |
b1640 |
anmK |
-7.89 |
0.496680 |
290 -- 297 |
63 -- 70 |
anhydro-N-acetylmuramic acid kinase |
|
_____________289______298\n_____________|________|\n5'-CCA...CGGGU________UGG-3'\n______________CGCACAGC\n______________|:||||||\n______________GUGUGUCG\n3'-UUU...CUGAU________UUAAG...GCA-5'\n_____________|________|\n_____________71_______62\n |
291 -- 297 |
63 -- 69 |
-13.0848 kcal/mol |
2.06561 kcal/mol |
3.13161 kcal/mol |
289 298@LB@ | |@LB@5'-CCA...CGGGU UGG-3'@LB@ CGCACAGC@LB@ |:||||||@LB@ GUGUGUCG@LB@3'-UUU...CUGAU UUAAG...GCA-5'@LB@ | |@LB@ 71 62@LB@@LB@@LB@Energy -7.89 kcal/mol@LB@Hybridization Energy -13.0848 kcal/mol@LB@Unfolding Energy - mRNA 2.06561 kcal/mol@LB@Unfolding Energy - sRNA 3.13161 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 63 -- 70@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 63 -- 69@LB@ |
84 |
0.003656 |
0.1509 |
b0827 |
moeA |
-7.84 |
0.503176 |
157 -- 203 |
32 -- 75 |
molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
|
_____________156_______________________________________________204\n_____________|_________________________________________________|\n5'-AUU...UUUCU_______AUA___A______AUU___CC____G____A_U_________GAAUU...UAC-3'\n______________GAC_AUA___GGC_AAUUCG___UUG__UC_C_CAGG_G_GUUUUCAUG\n______________|||_|:|___:||_||||||___|||__||_|_||||_|_:|||:||||\n______________CUG_UGU___UCG_UUAAGC___AAC__AG_G_GUCC_C_UAAAGGUAC\n3'-UUU...CGUUU___A___GUG________________AA__U_A______C_________GAAUA...GCA-5'\n_____________|_________________________________________________|\n_____________76________________________________________________31\n |
197 -- 203 |
32 -- 38 |
-28.9008 kcal/mol |
13.8106 kcal/mol |
7.24967 kcal/mol |
156 204@LB@ | |@LB@5'-AUU...UUUCU AUA A AUU CC G A U GAAUU...UAC-3'@LB@ GAC AUA GGC AAUUCG UUG UC C CAGG G GUUUUCAUG@LB@ ||| |:| :|| |||||| ||| || | |||| | :|||:||||@LB@ CUG UGU UCG UUAAGC AAC AG G GUCC C UAAAGGUAC@LB@3'-UUU...CGUUU A GUG AA U A C GAAUA...GCA-5'@LB@ | |@LB@ 76 31@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -28.9008 kcal/mol@LB@Unfolding Energy - mRNA 13.8106 kcal/mol@LB@Unfolding Energy - sRNA 7.24967 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 32 -- 75@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 32 -- 38@LB@ |
138 |
0.006392 |
0.1605 |
b0345 |
lacI |
-7.62 |
0.533808 |
7 -- 17 |
61 -- 71 |
lactose-inducible lac operon transcriptional repressor |
|
_____________6___________18\n_____________|___________|\n_____5'-CAUUGA___G_______AAAAG...AAA-3'\n______________ACA_GCAGCGG\n______________|||_:||||::\n______________UGU_UGUCGUU\n3'-UUU...UCUGA___G_______AAGCA...GCA-5'\n_____________|___________|\n_____________72__________60\n |
11 -- 17 |
61 -- 67 |
-13.1569 kcal/mol |
2.35774 kcal/mol |
3.17655 kcal/mol |
6 18@LB@ | |@LB@ 5'-CAUUGA G AAAAG...AAA-3'@LB@ ACA GCAGCGG@LB@ ||| :||||::@LB@ UGU UGUCGUU@LB@3'-UUU...UCUGA G AAGCA...GCA-5'@LB@ | |@LB@ 72 60@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -13.1569 kcal/mol@LB@Unfolding Energy - mRNA 2.35774 kcal/mol@LB@Unfolding Energy - sRNA 3.17655 kcal/mol@LB@@LB@Position - mRNA 7 -- 17@LB@Position - sRNA 61 -- 71@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 61 -- 67@LB@ |
174 |
0.008627 |
0.1745 |
b1926 |
fliT |
-7.57 |
0.540698 |
180 -- 211 |
31 -- 53 |
putative flagellar synthesis and assembly chaperone |
|
_____________179______________________________212\n_____________|________________________________|\n5'-GUG...CCUUC___G_______ACCCAGUCU___GAA______ACCGC...UCA-3'\n______________UUU_AUUCAGG_________GAU___CCAUGC\n______________|||_|:|||||_________|||___||||||\n______________AAA_UGAGUCC_________CUA___GGUACG\n3'-UUU...GCAAC___G_______C___________AA_______AAUAU...GCA-5'\n_____________|________________________________|\n_____________54_______________________________30\n |
184 -- 190 |
43 -- 49 |
-18.5651 kcal/mol |
6.60729 kcal/mol |
4.38339 kcal/mol |
179 212@LB@ | |@LB@5'-GUG...CCUUC G ACCCAGUCU GAA ACCGC...UCA-3'@LB@ UUU AUUCAGG GAU CCAUGC@LB@ ||| |:||||| ||| ||||||@LB@ AAA UGAGUCC CUA GGUACG@LB@3'-UUU...GCAAC G C AA AAUAU...GCA-5'@LB@ | |@LB@ 54 30@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -18.5651 kcal/mol@LB@Unfolding Energy - mRNA 6.60729 kcal/mol@LB@Unfolding Energy - sRNA 4.38339 kcal/mol@LB@@LB@Position - mRNA 180 -- 211@LB@Position - sRNA 31 -- 53@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 43 -- 49@LB@ |
40 |
0.0008945 |
0.07693 |
b0525 |
ppiB |
-7.31 |
0.578113 |
284 -- 298 |
61 -- 76 |
peptidyl-prolyl cis-trans isomerase B (rotamase B) |
|
_____________283______________299\n_____________|________________|\n5'-UGU...UUCCU___________C____AG-3'\n______________GGACUAC_UGC_GCGA\n______________:||||||_::|_||:|\n______________UCUGAUG_GUG_CGUU\n3'-UUU...CCGUU_______U___U____AAGCA...GCA-5'\n_____________|________________|\n_____________77_______________60\n |
284 -- 290 |
70 -- 76 |
-14.2171 kcal/mol |
3.65067 kcal/mol |
3.25604 kcal/mol |
283 299@LB@ | |@LB@5'-UGU...UUCCU C AG-3'@LB@ GGACUAC UGC GCGA@LB@ :|||||| ::| ||:|@LB@ UCUGAUG GUG CGUU@LB@3'-UUU...CCGUU U U AAGCA...GCA-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -7.31 kcal/mol@LB@Hybridization Energy -14.2171 kcal/mol@LB@Unfolding Energy - mRNA 3.65067 kcal/mol@LB@Unfolding Energy - sRNA 3.25604 kcal/mol@LB@@LB@Position - mRNA 284 -- 298@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 70 -- 76@LB@ |
108 |
0.004771 |
0.1538 |
b2594 |
rluD |
-7.24 |
0.588975 |
189 -- 206 |
62 -- 78 |
23S rRNA pseudouridine(1911 1915 1917) synthase |
|
_____________188________________207\n_____________|__________________|\n5'-CCC...ACGAA____C_G___________CAACG...GUU-3'\n______________GAAG_A_UAUAUAUGGCA\n______________:|||_|_||:|:|::|||\n______________UUUC_U_AUGUGUGUCGU\n3'-UUU...ACCCG______G___________UAAGC...GCA-5'\n_____________|__________________|\n_____________79_________________61\n |
200 -- 206 |
62 -- 68 |
-13.9289 kcal/mol |
3.43926 kcal/mol |
3.2555 kcal/mol |
188 207@LB@ | |@LB@5'-CCC...ACGAA C G CAACG...GUU-3'@LB@ GAAG A UAUAUAUGGCA@LB@ :||| | ||:|:|::|||@LB@ UUUC U AUGUGUGUCGU@LB@3'-UUU...ACCCG G UAAGC...GCA-5'@LB@ | |@LB@ 79 61@LB@@LB@@LB@Energy -7.24 kcal/mol@LB@Hybridization Energy -13.9289 kcal/mol@LB@Unfolding Energy - mRNA 3.43926 kcal/mol@LB@Unfolding Energy - sRNA 3.2555 kcal/mol@LB@@LB@Position - mRNA 189 -- 206@LB@Position - sRNA 62 -- 78@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 62 -- 68@LB@ |
165 |
0.007934 |
0.1692 |
b3355 |
prkB |
-7.13 |
0.603515 |
287 -- 294 |
63 -- 70 |
putative phosphoribulokinase |
|
_____________286______295\n_____________|________|\n5'-GGC...AUAUU________UAAAUC-3'\n______________CGCGCAGU\n______________|:|:|||:\n______________GUGUGUCG\n3'-UUU...CUGAU________UUAAG...GCA-5'\n_____________|________|\n_____________71_______62\n |
288 -- 294 |
63 -- 69 |
-11.0055 kcal/mol |
0.741841 kcal/mol |
3.13161 kcal/mol |
286 295@LB@ | |@LB@5'-GGC...AUAUU UAAAUC-3'@LB@ CGCGCAGU@LB@ |:|:|||:@LB@ GUGUGUCG@LB@3'-UUU...CUGAU UUAAG...GCA-5'@LB@ | |@LB@ 71 62@LB@@LB@@LB@Energy -7.13 kcal/mol@LB@Hybridization Energy -11.0055 kcal/mol@LB@Unfolding Energy - mRNA 0.741841 kcal/mol@LB@Unfolding Energy - sRNA 3.13161 kcal/mol@LB@@LB@Position - mRNA 287 -- 294@LB@Position - sRNA 63 -- 70@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 63 -- 69@LB@ |
119 |
0.005328 |
0.1553 |
b3417 |
malP |
-6.58 |
0.680720 |
220 -- 257 |
42 -- 71 |
maltodextrin phosphorylase |
|
_____________219____________________________________258\n_____________|______________________________________|\n5'-ACA...UUUUA___AUA________CAG_AAGCGC______G____U__CAGCG...GCC-3'\n______________ACG___AGCAAUUU___G______UUUCAC_UCAG_GG\n______________||:___|||||||:___|______||||||_||||_||\n______________UGU___UCGUUAAG___C______AAAGUG_AGUC_CC\n3'-UUU...UCUGA___GUG________CAA_____________________CUAAA...GCA-5'\n_____________|______________________________________|\n_____________72_____________________________________41\n |
227 -- 233 |
58 -- 64 |
-19.6486 kcal/mol |
8.3321 kcal/mol |
4.73391 kcal/mol |
219 258@LB@ | |@LB@5'-ACA...UUUUA AUA CAG AAGCGC G U CAGCG...GCC-3'@LB@ ACG AGCAAUUU G UUUCAC UCAG GG@LB@ ||: |||||||: | |||||| |||| ||@LB@ UGU UCGUUAAG C AAAGUG AGUC CC@LB@3'-UUU...UCUGA GUG CAA CUAAA...GCA-5'@LB@ | |@LB@ 72 41@LB@@LB@@LB@Energy -6.58 kcal/mol@LB@Hybridization Energy -19.6486 kcal/mol@LB@Unfolding Energy - mRNA 8.3321 kcal/mol@LB@Unfolding Energy - sRNA 4.73391 kcal/mol@LB@@LB@Position - mRNA 220 -- 257@LB@Position - sRNA 42 -- 71@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 58 -- 64@LB@ |