56 |
0.001982 |
0.1223 |
b2304 |
yfcH |
-16.49 |
0.008143 |
193 -- 225 |
40 -- 77 |
putative NAD-dependent nucleotide-sugar epimerase |
|
_____________192_________________________________________226\n_____________|___________________________________________|\n5'-AAA...AUCGG________AUGA__________________________A____CAGGA...ACC-3'\n______________GAGGCUGC____ACAUAGUGA_________UCAC_CGG_GGGA\n______________:||:||:|____|||:||::|_________||||_|:|_||||\n______________UUCUGAUG____UGUGUCGUU_________AGUG_GUC_CCCU\n3'-UUU...CCCGU_____________________AAGCAACAA____A________AAAGG...GCA-5'\n_____________|___________________________________________|\n_____________78__________________________________________39\n |
206 -- 212 |
62 -- 68 |
-29.217 kcal/mol |
7.9505 kcal/mol |
4.77871 kcal/mol |
192 226@LB@ | |@LB@5'-AAA...AUCGG AUGA A CAGGA...ACC-3'@LB@ GAGGCUGC ACAUAGUGA UCAC CGG GGGA@LB@ :||:||:| |||:||::| |||| |:| ||||@LB@ UUCUGAUG UGUGUCGUU AGUG GUC CCCU@LB@3'-UUU...CCCGU AAGCAACAA A AAAGG...GCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -29.217 kcal/mol@LB@Unfolding Energy - mRNA 7.9505 kcal/mol@LB@Unfolding Energy - sRNA 4.77871 kcal/mol@LB@@LB@Position - mRNA 193 -- 225@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 62 -- 68@LB@ |
69 |
0.002809 |
0.1417 |
b1925 |
fliS |
-16.42 |
0.008504 |
133 -- 153 |
57 -- 74 |
flagellar protein potentiates polymerization |
|
_____________132___________________154\n_____________|_____________________|\n5'-UUA...CAGCA_____UUA_____________AAAAC...AUG-3'\n______________GCUAC___ACGCAGCAGUUCG\n______________:||||___||:|||||:||||\n______________UGAUG___UGUGUCGUUAAGC\n3'-UUU...GUUUC_____________________AACAA...GCA-5'\n_____________|_____________________|\n_____________75____________________56\n |
147 -- 153 |
57 -- 63 |
-25.0139 kcal/mol |
5.019 kcal/mol |
3.57148 kcal/mol |
132 154@LB@ | |@LB@5'-UUA...CAGCA UUA AAAAC...AUG-3'@LB@ GCUAC ACGCAGCAGUUCG@LB@ :|||| ||:|||||:||||@LB@ UGAUG UGUGUCGUUAAGC@LB@3'-UUU...GUUUC AACAA...GCA-5'@LB@ | |@LB@ 75 56@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.0139 kcal/mol@LB@Unfolding Energy - mRNA 5.019 kcal/mol@LB@Unfolding Energy - sRNA 3.57148 kcal/mol@LB@@LB@Position - mRNA 133 -- 153@LB@Position - sRNA 57 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 57 -- 63@LB@ |
156 |
0.007591 |
0.1668 |
b1044 |
ymdA |
-16.39 |
0.008687 |
226 -- 252 |
46 -- 73 |
uncharacterized protein |
|
_____________225__________________________253\n_____________|____________________________|\n5'-UGA...CUCUC______U____________U________UUAUU...UUU-3'\n______________UUAUGC_CGGCAGUUUGUU_UUUC_CUU\n______________:||::|_|:|||:||:|||_||||_||:\n______________GAUGUG_GUCGUUAAGCAA_AAAG_GAG\n3'-UUU...UUUCU______U____________C____U___UCCCC...GCA-5'\n_____________|____________________________|\n_____________74___________________________45\n |
236 -- 242 |
57 -- 63 |
-24.6333 kcal/mol |
4.51706 kcal/mol |
3.72492 kcal/mol |
225 253@LB@ | |@LB@5'-UGA...CUCUC U U UUAUU...UUU-3'@LB@ UUAUGC CGGCAGUUUGUU UUUC CUU@LB@ :||::| |:|||:||:||| |||| ||:@LB@ GAUGUG GUCGUUAAGCAA AAAG GAG@LB@3'-UUU...UUUCU U C U UCCCC...GCA-5'@LB@ | |@LB@ 74 45@LB@@LB@@LB@Energy -16.39 kcal/mol@LB@Hybridization Energy -24.6333 kcal/mol@LB@Unfolding Energy - mRNA 4.51706 kcal/mol@LB@Unfolding Energy - sRNA 3.72492 kcal/mol@LB@@LB@Position - mRNA 226 -- 252@LB@Position - sRNA 46 -- 73@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 57 -- 63@LB@ |
30 |
0.0004324 |
0.05073 |
b3364 |
tsgA |
-16.38 |
0.008733 |
203 -- 236 |
38 -- 75 |
putative transporter |
|
_____________202_____________________________________237\n_____________|_______________________________________|\n5'-CCA...AUCAU___________________CAUCAA______CAU_____AGCUU...AUA-3'\n______________GACUA___ACAGCAAU_CG_______GCUCA___GGAUU\n______________|||||___||||||||_||_______:||||___|||||\n______________CUGAU___UGUCGUUA_GC_______UGAGU___CCUAA\n3'-UUU...CGUUU_____GUG________A__AACAAAG_____CC______AGGUA...GCA-5'\n_____________|_______________________________________|\n_____________76______________________________________37\n |
209 -- 215 |
60 -- 66 |
-26.4683 kcal/mol |
5.30565 kcal/mol |
4.77946 kcal/mol |
202 237@LB@ | |@LB@5'-CCA...AUCAU CAUCAA CAU AGCUU...AUA-3'@LB@ GACUA ACAGCAAU CG GCUCA GGAUU@LB@ ||||| |||||||| || :|||| |||||@LB@ CUGAU UGUCGUUA GC UGAGU CCUAA@LB@3'-UUU...CGUUU GUG A AACAAAG CC AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -26.4683 kcal/mol@LB@Unfolding Energy - mRNA 5.30565 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 203 -- 236@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 60 -- 66@LB@ |
81 |
0.003429 |
0.1462 |
b0413 |
nrdR |
-16.32 |
0.009130 |
136 -- 177 |
33 -- 64 |
Nrd regulon repressor |
|
_____________135_________________________________________178\n_____________|___________________________________________|\n5'-AGG...GUUGC__C_________A___UCAG_______UAAAAUA_________UAACC...UGU-3'\n______________GC__UUUGUUGU_UCG____UUCAGGG_______GAUUUCCGU\n______________||__||:|||||_||:____:||||||_______|||||||:|\n______________CG__AAGCAACA_AGU____GAGUCCC_______CUAAAGGUA\n3'-UUU...UGUGU__UU________A______________________________CGAAU...GCA-5'\n_____________|___________________________________________|\n_____________65__________________________________________32\n |
171 -- 177 |
33 -- 39 |
-28.4719 kcal/mol |
7.3911 kcal/mol |
4.76435 kcal/mol |
135 178@LB@ | |@LB@5'-AGG...GUUGC C A UCAG UAAAAUA UAACC...UGU-3'@LB@ GC UUUGUUGU UCG UUCAGGG GAUUUCCGU@LB@ || ||:||||| ||: :|||||| |||||||:|@LB@ CG AAGCAACA AGU GAGUCCC CUAAAGGUA@LB@3'-UUU...UGUGU UU A CGAAU...GCA-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -28.4719 kcal/mol@LB@Unfolding Energy - mRNA 7.3911 kcal/mol@LB@Unfolding Energy - sRNA 4.76435 kcal/mol@LB@@LB@Position - mRNA 136 -- 177@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 33 -- 39@LB@ |
102 |
0.004593 |
0.1538 |
b0343 |
lacY |
-16.22 |
0.009713 |
12 -- 55 |
39 -- 78 |
lactose permease |
|
_____________11___________________________________________56\n_____________|____________________________________________|\n5'-UGC...ACGCG_____AG_________UG___A___ACG_____CA_AU______UGGUG...GGC-3'\n______________GAAGA__GCACAUGGC__AAU_UCG___GUUUC__U__GGGGAU\n______________:||||__:||||::||__|||_|||___|||||__|__||||||\n______________UUUCU__UGUGUGUCG__UUA_AGC___CAAAG__A__CCCCUA\n3'-UUU...ACCCG_____GA__________________AA______UG_GU______AAGGU...GCA-5'\n_____________|____________________________________________|\n_____________79___________________________________________38\n |
21 -- 27 |
63 -- 69 |
-31.4377 kcal/mol |
10.4352 kcal/mol |
4.77966 kcal/mol |
11 56@LB@ | |@LB@5'-UGC...ACGCG AG UG A ACG CA AU UGGUG...GGC-3'@LB@ GAAGA GCACAUGGC AAU UCG GUUUC U GGGGAU@LB@ :|||| :||||::|| ||| ||| ||||| | ||||||@LB@ UUUCU UGUGUGUCG UUA AGC CAAAG A CCCCUA@LB@3'-UUU...ACCCG GA AA UG GU AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -31.4377 kcal/mol@LB@Unfolding Energy - mRNA 10.4352 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 12 -- 55@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 63 -- 69@LB@ |
39 |
0.0006857 |
0.06187 |
b1305 |
pspB |
-16.08 |
0.010660 |
268 -- 296 |
48 -- 75 |
psp operon transcription co-activator |
|
_____________267____________________________297\n_____________|______________________________|\n5'-AUU...GUUAU_______U______________CUGG____AGUG-3'\n______________GGCUGCA_UACAGCAAU_CGUU____UCGC\n______________|:||:||_:||||||||_||||____||:|\n______________CUGAUGU_GUGUCGUUA_GCAA____AGUG\n3'-UUU...CGUUU_________________A____CAA_____AGUCC...GCA-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
278 -- 284 |
60 -- 66 |
-29.5086 kcal/mol |
9.74074 kcal/mol |
3.68696 kcal/mol |
267 297@LB@ | |@LB@5'-AUU...GUUAU U CUGG AGUG-3'@LB@ GGCUGCA UACAGCAAU CGUU UCGC@LB@ |:||:|| :|||||||| |||| ||:|@LB@ CUGAUGU GUGUCGUUA GCAA AGUG@LB@3'-UUU...CGUUU A CAA AGUCC...GCA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -16.08 kcal/mol@LB@Hybridization Energy -29.5086 kcal/mol@LB@Unfolding Energy - mRNA 9.74074 kcal/mol@LB@Unfolding Energy - sRNA 3.68696 kcal/mol@LB@@LB@Position - mRNA 268 -- 296@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 60 -- 66@LB@ |
83 |
0.003448 |
0.1462 |
b4231 |
yjfF |
-16.06 |
0.010834 |
60 -- 72 |
39 -- 51 |
putative sugar ABC transporter permease |
|
_____________59____________73\n_____________|_____________|\n5'-CGG...GCUGA_____________GAACA...GAG-3'\n______________UUAUUCAGGGGAU\n______________|:|:|||||||||\n______________AGUGAGUCCCCUA\n3'-UUU...AACAA_____________AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
66 -- 72 |
39 -- 45 |
-20.8743 kcal/mol |
3.02031 kcal/mol |
1.79807 kcal/mol |
59 73@LB@ | |@LB@5'-CGG...GCUGA GAACA...GAG-3'@LB@ UUAUUCAGGGGAU@LB@ |:|:|||||||||@LB@ AGUGAGUCCCCUA@LB@3'-UUU...AACAA AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -20.8743 kcal/mol@LB@Unfolding Energy - mRNA 3.02031 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 60 -- 72@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 39 -- 45@LB@ |
29 |
0.0004091 |
0.04965 |
b0958 |
sulA |
-15.92 |
0.011809 |
212 -- 243 |
48 -- 76 |
SOS cell division inhibitor |
|
_____________211______________________________244\n_____________|________________________________|\n5'-AUA...ACUUC____________UC__UC_____C___C____CCGCA...UCA-3'\n______________AGGCUAUGCACA__GU__UUCGU_GUU_UCAU\n______________||:|||::||||__|:__|||||_|||_|||:\n______________UCUGAUGUGUGU__CG__AAGCA_CAA_AGUG\n3'-UUU...CCGUU________________UU_____A________AGUCC...GCA-5'\n_____________|________________________________|\n_____________77_______________________________47\n |
217 -- 223 |
65 -- 71 |
-24.9625 kcal/mol |
5.35271 kcal/mol |
3.68714 kcal/mol |
211 244@LB@ | |@LB@5'-AUA...ACUUC UC UC C C CCGCA...UCA-3'@LB@ AGGCUAUGCACA GU UUCGU GUU UCAU@LB@ ||:|||::|||| |: ||||| ||| |||:@LB@ UCUGAUGUGUGU CG AAGCA CAA AGUG@LB@3'-UUU...CCGUU UU A AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -24.9625 kcal/mol@LB@Unfolding Energy - mRNA 5.35271 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 212 -- 243@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 65 -- 71@LB@ |
16 |
0.00012 |
0.02638 |
b3089 |
sstT |
-15.87 |
0.012233 |
203 -- 224 |
42 -- 75 |
sodium:serine/threonine symporter |
|
_____________202________________________________225\n_____________|__________________________________|\n5'-CAC...AAAAU_________ACG______________________CUAUU...CAU-3'\n______________GACUACGCA______________UUCAC_CGGGG\n______________||||||:||______________|||||_|:|||\n______________CUGAUGUGU______________AAGUG_GUCCC\n3'-UUU...CGUUU_________GUCGUUAAGCAACA_____A_____CUAAA...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________41\n |
205 -- 211 |
67 -- 73 |
-24.6329 kcal/mol |
4.00159 kcal/mol |
4.76397 kcal/mol |
202 225@LB@ | |@LB@5'-CAC...AAAAU ACG CUAUU...CAU-3'@LB@ GACUACGCA UUCAC CGGGG@LB@ ||||||:|| ||||| |:|||@LB@ CUGAUGUGU AAGUG GUCCC@LB@3'-UUU...CGUUU GUCGUUAAGCAACA A CUAAA...GCA-5'@LB@ | |@LB@ 76 41@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -24.6329 kcal/mol@LB@Unfolding Energy - mRNA 4.00159 kcal/mol@LB@Unfolding Energy - sRNA 4.76397 kcal/mol@LB@@LB@Position - mRNA 203 -- 224@LB@Position - sRNA 42 -- 75@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 67 -- 73@LB@ |