137 |
0.006282 |
0.1605 |
b0123 |
cueO |
-13.57 |
0.047118 |
144 -- 176 |
48 -- 78 |
multicopper oxidase (laccase) |
|
_____________143________________________________177\n_____________|__________________________________|\n5'-CUG...AGGGG___________U__A_______AUU_________CUGCU...CGU-3'\n______________AAGGACUAUGC_CA_C_GUUUG___UUGUUUCGC\n______________||:|||||::|_||_|_:||:|___|||||||:|\n______________UUUCUGAUGUG_GU_G_UAAGC___AACAAAGUG\n3'-UUU...ACCCG___________U__C_U_________________AGUCC...GCA-5'\n_____________|__________________________________|\n_____________79_________________________________47\n |
170 -- 176 |
48 -- 54 |
-24.1368 kcal/mol |
6.88378 kcal/mol |
3.68736 kcal/mol |
143 177@LB@ | |@LB@5'-CUG...AGGGG U A AUU CUGCU...CGU-3'@LB@ AAGGACUAUGC CA C GUUUG UUGUUUCGC@LB@ ||:|||||::| || | :||:| |||||||:|@LB@ UUUCUGAUGUG GU G UAAGC AACAAAGUG@LB@3'-UUU...ACCCG U C U AGUCC...GCA-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -24.1368 kcal/mol@LB@Unfolding Energy - mRNA 6.88378 kcal/mol@LB@Unfolding Energy - sRNA 3.68736 kcal/mol@LB@@LB@Position - mRNA 144 -- 176@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 48 -- 54@LB@ |
23 |
0.0001955 |
0.02926 |
b3846 |
fadB |
-13.56 |
0.047358 |
39 -- 83 |
35 -- 77 |
fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________38________________________________________________84\n_____________|_________________________________________________|\n5'-AGU...ACCUU___U__C_____CUU____CA____________C___A_C_U_______GCCGA...CUG-3'\n______________AAG_CU_CGCAU___AGCA__UCGU____UCAU_CAG_G_G_GAUUUCU\n______________|||_||_|:||:___||||__||||____|||:_|||_|_|_||||||:\n______________UUC_GA_GUGUG___UCGU__AGCA____AGUG_GUC_C_C_CUAAAGG\n3'-UUU...CCCGU___U__U____________UA____ACAA____A_______________UACGA...GCA-5'\n_____________|_________________________________________________|\n_____________78________________________________________________34\n |
77 -- 83 |
35 -- 41 |
-27.7125 kcal/mol |
9.35112 kcal/mol |
4.80542 kcal/mol |
38 84@LB@ | |@LB@5'-AGU...ACCUU U C CUU CA C A C U GCCGA...CUG-3'@LB@ AAG CU CGCAU AGCA UCGU UCAU CAG G G GAUUUCU@LB@ ||| || |:||: |||| |||| |||: ||| | | ||||||:@LB@ UUC GA GUGUG UCGU AGCA AGUG GUC C C CUAAAGG@LB@3'-UUU...CCCGU U U UA ACAA A UACGA...GCA-5'@LB@ | |@LB@ 78 34@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -27.7125 kcal/mol@LB@Unfolding Energy - mRNA 9.35112 kcal/mol@LB@Unfolding Energy - sRNA 4.80542 kcal/mol@LB@@LB@Position - mRNA 39 -- 83@LB@Position - sRNA 35 -- 77@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 35 -- 41@LB@ |
123 |
0.005464 |
0.1553 |
b3746 |
ravA |
-13.51 |
0.048673 |
243 -- 263 |
41 -- 65 |
hexameric AAA+ MoxR family ATPase putative molecular chaperone |
|
_____________242_______________________264\n_____________|_________________________|\n5'-UGA...GCCUG____________GAAA_________CUUUA...UAU-3'\n______________AGCAGUUCGUUG________AGGGG\n______________||||:|||||||________|||||\n______________UCGUUAAGCAAC________UCCCC\n3'-UUU...GUGUG____________AAAGUGAG_____UAAAG...GCA-5'\n_____________|_________________________|\n_____________66________________________40\n |
248 -- 254 |
54 -- 60 |
-25.3509 kcal/mol |
7.14336 kcal/mol |
4.70281 kcal/mol |
242 264@LB@ | |@LB@5'-UGA...GCCUG GAAA CUUUA...UAU-3'@LB@ AGCAGUUCGUUG AGGGG@LB@ ||||:||||||| |||||@LB@ UCGUUAAGCAAC UCCCC@LB@3'-UUU...GUGUG AAAGUGAG UAAAG...GCA-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.51 kcal/mol@LB@Hybridization Energy -25.3509 kcal/mol@LB@Unfolding Energy - mRNA 7.14336 kcal/mol@LB@Unfolding Energy - sRNA 4.70281 kcal/mol@LB@@LB@Position - mRNA 243 -- 263@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 54 -- 60@LB@ |
73 |
0.00298 |
0.1437 |
b0474 |
adk |
-13.48 |
0.049381 |
180 -- 198 |
34 -- 50 |
adenylate kinase |
|
_____________179_________________199\n_____________|___________________|\n5'-ACC...CGACA_____UA____________CAAUG...AUA-3'\n______________CAUUU__AGGGGAUUUUCG\n______________||:|:__|||||||||:|:\n______________GUGAG__UCCCCUAAAGGU\n3'-UUU...ACAAA___________________ACGAA...GCA-5'\n_____________|___________________|\n_____________51__________________33\n |
191 -- 197 |
35 -- 41 |
-19.9961 kcal/mol |
4.64453 kcal/mol |
1.87382 kcal/mol |
179 199@LB@ | |@LB@5'-ACC...CGACA UA CAAUG...AUA-3'@LB@ CAUUU AGGGGAUUUUCG@LB@ ||:|: |||||||||:|:@LB@ GUGAG UCCCCUAAAGGU@LB@3'-UUU...ACAAA ACGAA...GCA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9961 kcal/mol@LB@Unfolding Energy - mRNA 4.64453 kcal/mol@LB@Unfolding Energy - sRNA 1.87382 kcal/mol@LB@@LB@Position - mRNA 180 -- 198@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 35 -- 41@LB@ |
61 |
0.002486 |
0.1417 |
b1487 |
ddpA |
-13.46 |
0.049908 |
168 -- 192 |
43 -- 71 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________167___________________________193\n_____________|_____________________________|\n5'-UCA...CCCUG________________CAG____A_____AAACU...UGA-3'\n______________GCACACAGCA___CGU____UUA_UCAGG\n______________:|||||||||___|||____|:|_|||||\n______________UGUGUGUCGU___GCA____AGU_AGUCC\n3'-UUU...UCUGA__________UAA___ACAA___G_____CCUAA...GCA-5'\n_____________|_____________________________|\n_____________72____________________________42\n |
171 -- 177 |
62 -- 68 |
-25.043 kcal/mol |
7.26137 kcal/mol |
4.32409 kcal/mol |
167 193@LB@ | |@LB@5'-UCA...CCCUG CAG A AAACU...UGA-3'@LB@ GCACACAGCA CGU UUA UCAGG@LB@ :||||||||| ||| |:| |||||@LB@ UGUGUGUCGU GCA AGU AGUCC@LB@3'-UUU...UCUGA UAA ACAA G CCUAA...GCA-5'@LB@ | |@LB@ 72 42@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -25.043 kcal/mol@LB@Unfolding Energy - mRNA 7.26137 kcal/mol@LB@Unfolding Energy - sRNA 4.32409 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 43 -- 71@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 62 -- 68@LB@ |
91 |
0.00412 |
0.1538 |
b0931 |
pncB |
-13.41 |
0.051237 |
255 -- 284 |
48 -- 77 |
nicotinate phosphoribosyltransferase |
|
_____________254______________________________285\n_____________|________________________________|\n5'-AUG...CUUAU__________AU_______GC___________CACUA...UGC-3'\n______________AAG_UUGCAU__GCAGCAA__CG_UGUUUCAU\n______________|||_:|:||:__:||||||__||_|||||||:\n______________UUC_GAUGUG__UGUCGUU__GC_ACAAAGUG\n3'-UUU...CCCGU___U_______________AA__A________AGUCC...GCA-5'\n_____________|________________________________|\n_____________78_______________________________47\n |
278 -- 284 |
48 -- 54 |
-26.8209 kcal/mol |
9.72536 kcal/mol |
3.68729 kcal/mol |
254 285@LB@ | |@LB@5'-AUG...CUUAU AU GC CACUA...UGC-3'@LB@ AAG UUGCAU GCAGCAA CG UGUUUCAU@LB@ ||| :|:||: :|||||| || |||||||:@LB@ UUC GAUGUG UGUCGUU GC ACAAAGUG@LB@3'-UUU...CCCGU U AA A AGUCC...GCA-5'@LB@ | |@LB@ 78 47@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -26.8209 kcal/mol@LB@Unfolding Energy - mRNA 9.72536 kcal/mol@LB@Unfolding Energy - sRNA 3.68729 kcal/mol@LB@@LB@Position - mRNA 255 -- 284@LB@Position - sRNA 48 -- 77@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 48 -- 54@LB@ |
51 |
0.001671 |
0.1153 |
b3527 |
yhjJ |
-13.34 |
0.053290 |
153 -- 204 |
31 -- 75 |
putative periplasmic M16 family chaperone |
|
_____________152_____________________________________________________205\n_____________|_______________________________________________________|\n5'-CUC...UGACC___A___G_____UU___UAUUACCAGGAUA___GA____________CA_____AGGGC...GGC-3'\n______________GAC_ACG_GCAGU__UUU_____________GUU____UCAGGGG_UU__CAUGC\n______________|||_||:_:|||:__||:_____________|||____|||||||_||__|||||\n______________CUG_UGU_UGUCG__AAG_____________CAA____AGUCCCC_AA__GUACG\n3'-UUU...CGUUU___A___G_____UU___CAA_____________AGUG_______U__AG_____AAUAU...GCA-5'\n_____________|_______________________________________________________|\n_____________76______________________________________________________30\n |
189 -- 195 |
41 -- 47 |
-32.6504 kcal/mol |
12.0549 kcal/mol |
7.26183 kcal/mol |
152 205@LB@ | |@LB@5'-CUC...UGACC A G UU UAUUACCAGGAUA GA CA AGGGC...GGC-3'@LB@ GAC ACG GCAGU UUU GUU UCAGGGG UU CAUGC@LB@ ||| ||: :|||: ||: ||| ||||||| || |||||@LB@ CUG UGU UGUCG AAG CAA AGUCCCC AA GUACG@LB@3'-UUU...CGUUU A G UU CAA AGUG U AG AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -32.6504 kcal/mol@LB@Unfolding Energy - mRNA 12.0549 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 153 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 41 -- 47@LB@ |
46 |
0.001357 |
0.1038 |
b1235 |
rssB |
-13.33 |
0.053430 |
184 -- 194 |
40 -- 50 |
PcnB-degradosome interaction factor; response regulator |
|
_____________183_________195\n_____________|___________|\n5'-AAU...AAAGC__G________GAGAA...CAA-3'\n______________CA_UCAGGGGA\n______________||_||||||||\n______________GU_AGUCCCCU\n3'-UUU...ACAAA__G________AAAGG...GCA-5'\n_____________|___________|\n_____________51__________39\n |
188 -- 194 |
40 -- 46 |
-19.1981 kcal/mol |
4.11697 kcal/mol |
1.75243 kcal/mol |
183 195@LB@ | |@LB@5'-AAU...AAAGC G GAGAA...CAA-3'@LB@ CA UCAGGGGA@LB@ || ||||||||@LB@ GU AGUCCCCU@LB@3'-UUU...ACAAA G AAAGG...GCA-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -19.1981 kcal/mol@LB@Unfolding Energy - mRNA 4.11697 kcal/mol@LB@Unfolding Energy - sRNA 1.75243 kcal/mol@LB@@LB@Position - mRNA 184 -- 194@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 40 -- 46@LB@ |
184 |
0.00937 |
0.1776 |
b2467 |
nudK |
-13.30 |
0.054361 |
69 -- 94 |
38 -- 78 |
GDP-mannose pyrophosphatase |
|
_____________68________________________________________95\n_____________|_________________________________________|\n5'-CAA...GGCAG______GU_________________________________AUUGA...AAG-3'\n______________AAGGAC__CAUGCGGCA_______________CAGGGGAUU\n______________||:|||__||::|:|||_______________|||||||||\n______________UUUCUG__GUGUGUCGU_______________GUCCCCUAA\n3'-UUU...ACCCG______AU_________UAAGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|_________________________________________|\n_____________79________________________________________37\n |
88 -- 94 |
38 -- 44 |
-30.5001 kcal/mol |
12.4248 kcal/mol |
4.77973 kcal/mol |
68 95@LB@ | |@LB@5'-CAA...GGCAG GU AUUGA...AAG-3'@LB@ AAGGAC CAUGCGGCA CAGGGGAUU@LB@ ||:||| ||::|:||| |||||||||@LB@ UUUCUG GUGUGUCGU GUCCCCUAA@LB@3'-UUU...ACCCG AU UAAGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 79 37@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -30.5001 kcal/mol@LB@Unfolding Energy - mRNA 12.4248 kcal/mol@LB@Unfolding Energy - sRNA 4.77973 kcal/mol@LB@@LB@Position - mRNA 69 -- 94@LB@Position - sRNA 38 -- 78@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 38 -- 44@LB@ |
41 |
0.0008963 |
0.07693 |
b1378 |
pfo |
-13.27 |
0.055135 |
136 -- 164 |
58 -- 78 |
pyruvate-flavodoxin oxidoreductase |
|
_____________135___________________________165\n_____________|_____________________________|\n5'-GCU...AAUUG_________UACUGGGC____________CGUGC...CAG-3'\n______________AAAGAUUAC________GCGCAGCAAUUU\n______________|||||:|||________:|:||||||||:\n______________UUUCUGAUG________UGUGUCGUUAAG\n3'-UUU...ACCCG_____________________________CAACA...GCA-5'\n_____________|_____________________________|\n_____________79____________________________57\n |
158 -- 164 |
58 -- 64 |
-22.0871 kcal/mol |
5.50788 kcal/mol |
3.31018 kcal/mol |
135 165@LB@ | |@LB@5'-GCU...AAUUG UACUGGGC CGUGC...CAG-3'@LB@ AAAGAUUAC GCGCAGCAAUUU@LB@ |||||:||| :|:||||||||:@LB@ UUUCUGAUG UGUGUCGUUAAG@LB@3'-UUU...ACCCG CAACA...GCA-5'@LB@ | |@LB@ 79 57@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -22.0871 kcal/mol@LB@Unfolding Energy - mRNA 5.50788 kcal/mol@LB@Unfolding Energy - sRNA 3.31018 kcal/mol@LB@@LB@Position - mRNA 136 -- 164@LB@Position - sRNA 58 -- 78@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 58 -- 64@LB@ |