| 193 |
0.00868 |
0.1548 |
b4226 |
ppa |
-9.88 |
0.117380 |
102 -- 122 |
43 -- 61 |
inorganic pyrophosphatase |
|
_____________101___________________123\n_____________|_____________________|\n5'-AUA...CUGGU__________AAUG_______AAACA...UCG-3'\n______________GAAAAAGGAA____AAGACGA\n______________:|||||||||____|||||:|\n______________UUUUUUCCUU____UUCUGUU\n3'-UUU...UUAAG__________CA_________AUACC...ACG-5'\n_____________|_____________________|\n_____________62____________________42\n |
116 -- 122 |
43 -- 49 |
-15.2744 kcal/mol |
3.19261 kcal/mol |
2.19883 kcal/mol |
101 123@LB@ | |@LB@5'-AUA...CUGGU AAUG AAACA...UCG-3'@LB@ GAAAAAGGAA AAGACGA@LB@ :||||||||| |||||:|@LB@ UUUUUUCCUU UUCUGUU@LB@3'-UUU...UUAAG CA AUACC...ACG-5'@LB@ | |@LB@ 62 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2744 kcal/mol@LB@Unfolding Energy - mRNA 3.19261 kcal/mol@LB@Unfolding Energy - sRNA 2.19883 kcal/mol@LB@@LB@Position - mRNA 102 -- 122@LB@Position - sRNA 43 -- 61@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 2 |
4.208e-07 |
0.0007412 |
b2531 |
iscR |
-21.46 |
0.000012 |
188 -- 264 |
2 -- 56 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________187___________________________________________________________________________265\n_____________|_____________________________________________________________________________|\n5'-AUG...UUUGA__U___________UG_GACUGACAUCUAAA______U_____GUGACCG__A______________C__A__U___AAGCG...AAC-3'\n______________GG_GAAGUAAGACA__A______________GGGCGC_AUGCC_______CA_UGCUUGACGUUGCG_UC_AC_CUG\n______________:|_|||||||||||__|______________|:||||_|:|||_______||_:||||||||||||:_||_||_|||\n______________UC_CUUCAUUCUGU__U______________CUCGCG_UGCGG_______GU_GCGAACUGCAACGU_AG_UG_GAC\n3'-UUU...UUUUU______________UA_AC__________________U______________A______________A_________G-5'\n_____________|_____________________________________________________________________________|\n_____________57____________________________________________________________________________1\n |
244 -- 250 |
14 -- 20 |
-58.8762 kcal/mol |
20.5805 kcal/mol |
16.8438 kcal/mol |
187 265@LB@ | |@LB@5'-AUG...UUUGA U UG GACUGACAUCUAAA U GUGACCG A C A U AAGCG...AAC-3'@LB@ GG GAAGUAAGACA A GGGCGC AUGCC CA UGCUUGACGUUGCG UC AC CUG@LB@ :| ||||||||||| | |:|||| |:||| || :||||||||||||: || || |||@LB@ UC CUUCAUUCUGU U CUCGCG UGCGG GU GCGAACUGCAACGU AG UG GAC@LB@3'-UUU...UUUUU UA AC U A A G-5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -58.8762 kcal/mol@LB@Unfolding Energy - mRNA 20.5805 kcal/mol@LB@Unfolding Energy - sRNA 16.8438 kcal/mol@LB@@LB@Position - mRNA 188 -- 264@LB@Position - sRNA 2 -- 56@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 59 |
0.0009764 |
0.05816 |
b0593 |
entC |
-14.06 |
0.008887 |
219 -- 262 |
19 -- 57 |
isochorismate synthase 1 |
|
_____________218____________________________________________263\n_____________|______________________________________________|\n5'-GGC...UGGCU_________CAGC____C______CAACACUU______A_______UUUCU...CAG-3'\n______________GAGGAAGUA____AGAC___AUGG________GCGCCC_AUCGCUU\n______________:||||||||____||||___||||________:|||||_|||||||\n______________UUCCUUCAU____UCUG___UACC________UGCGGG_UAGCGAA\n3'-UUU...GUUUU_________________UUA____UCGCGU________________CUGCA...ACG-5'\n_____________|______________________________________________|\n_____________58_____________________________________________18\n |
256 -- 262 |
19 -- 25 |
-38.3486 kcal/mol |
10.4998 kcal/mol |
13.7965 kcal/mol |
218 263@LB@ | |@LB@5'-GGC...UGGCU CAGC C CAACACUU A UUUCU...CAG-3'@LB@ GAGGAAGUA AGAC AUGG GCGCCC AUCGCUU@LB@ :|||||||| |||| |||| :||||| |||||||@LB@ UUCCUUCAU UCUG UACC UGCGGG UAGCGAA@LB@3'-UUU...GUUUU UUA UCGCGU CUGCA...ACG-5'@LB@ | |@LB@ 58 18@LB@@LB@@LB@Energy -14.06 kcal/mol@LB@Hybridization Energy -38.3486 kcal/mol@LB@Unfolding Energy - mRNA 10.4998 kcal/mol@LB@Unfolding Energy - sRNA 13.7965 kcal/mol@LB@@LB@Position - mRNA 219 -- 262@LB@Position - sRNA 19 -- 57@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 11 |
1.858e-05 |
0.005627 |
b4015 |
aceA |
-14.28 |
0.007567 |
72 -- 114 |
4 -- 39 |
isocitrate lyase |
|
_____________71___________________________________________115\n_____________|____________________________________________|\n5'-UUG...UCCCA_______UUUGAC______G____________GAA__GA_____ACUUC...UGA-3'\n______________GGGGCGU______GAUGCC_CA_CGCUUGAUG___CA__UCACC\n______________||:|||:______:|:|||_||_|||||||:|___||__|||||\n______________CCUCGCG______UUGCGG_GU_GCGAACUGC___GU__AGUGG\n3'-UUU...UUAUA______________________A_________AAC__A______ACG-5'\n_____________|____________________________________________|\n_____________40___________________________________________3\n |
96 -- 102 |
15 -- 21 |
-43.7402 kcal/mol |
14.1704 kcal/mol |
15.29 kcal/mol |
71 115@LB@ | |@LB@5'-UUG...UCCCA UUUGAC G GAA GA ACUUC...UGA-3'@LB@ GGGGCGU GAUGCC CA CGCUUGAUG CA UCACC@LB@ ||:|||: :|:||| || |||||||:| || |||||@LB@ CCUCGCG UUGCGG GU GCGAACUGC GU AGUGG@LB@3'-UUU...UUAUA A AAC A ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -43.7402 kcal/mol@LB@Unfolding Energy - mRNA 14.1704 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 72 -- 114@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 184 |
0.008005 |
0.1528 |
b3209 |
elbB |
-11.15 |
0.057587 |
162 -- 192 |
53 -- 86 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________161_________________________________193\n_____________|___________________________________|\n5'-GCG...AAAAA_____________U______C____GC________UGAUC...GUG-3'\n______________AAUUAA_UGUGUU___CAGU_AAUU___GAAAGGA\n______________|||:||_||||:|___||||_||||___:||||||\n______________UUAGUU_ACACGA___GUCA_UUAA___UUUUCCU\n3'-UUU...CAUGC______A______UAC_________GUU_______UCAUU...ACG-5'\n_____________|___________________________________|\n_____________87__________________________________52\n |
186 -- 192 |
53 -- 59 |
-19.5143 kcal/mol |
4.60736 kcal/mol |
3.76074 kcal/mol |
161 193@LB@ | |@LB@5'-GCG...AAAAA U C GC UGAUC...GUG-3'@LB@ AAUUAA UGUGUU CAGU AAUU GAAAGGA@LB@ |||:|| ||||:| |||| |||| :||||||@LB@ UUAGUU ACACGA GUCA UUAA UUUUCCU@LB@3'-UUU...CAUGC A UAC GUU UCAUU...ACG-5'@LB@ | |@LB@ 87 52@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -19.5143 kcal/mol@LB@Unfolding Energy - mRNA 4.60736 kcal/mol@LB@Unfolding Energy - sRNA 3.76074 kcal/mol@LB@@LB@Position - mRNA 162 -- 192@LB@Position - sRNA 53 -- 86@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 1 |
1.057e-08 |
3.724e-05 |
b0889 |
lrp |
-13.58 |
0.012310 |
166 -- 227 |
21 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________165_______________________________________________________________228\n_____________|_________________________________________________________________|\n5'-GUG...UCAGA___GAG____________AUAC__A_________AUAA___U__AUA___AGAA________G__AAAGA...AGC-3'\n______________CAG_____UAGGGAAGGA____AG_GAGACAAUA____UGG_AG___GCA____GCGCCC_U_GC\n______________|||_____:|:::|||||____||_:||||||||____|||_||___|||____:|||||_|_||\n______________GUC_____GUUUUUUCCU____UC_UUCUGUUAU____ACC_UC___CGU____UGCGGG_A_CG\n3'-UUU...GAUAC___AUUAA________________A___________________G_______________U_G__AACUG...ACG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________20\n |
191 -- 197 |
41 -- 47 |
-39.3483 kcal/mol |
8.89245 kcal/mol |
16.878 kcal/mol |
165 228@LB@ | |@LB@5'-GUG...UCAGA GAG AUAC A AUAA U AUA AGAA G AAAGA...AGC-3'@LB@ CAG UAGGGAAGGA AG GAGACAAUA UGG AG GCA GCGCCC U GC@LB@ ||| :|:::||||| || :|||||||| ||| || ||| :||||| | ||@LB@ GUC GUUUUUUCCU UC UUCUGUUAU ACC UC CGU UGCGGG A CG@LB@3'-UUU...GAUAC AUUAA A G U G AACUG...ACG-5'@LB@ | |@LB@ 71 20@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -39.3483 kcal/mol@LB@Unfolding Energy - mRNA 8.89245 kcal/mol@LB@Unfolding Energy - sRNA 16.878 kcal/mol@LB@@LB@Position - mRNA 166 -- 227@LB@Position - sRNA 21 -- 70@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 160 |
0.006309 |
0.1377 |
b2602 |
yfiL |
-11.97 |
0.035037 |
175 -- 199 |
46 -- 76 |
lipoprotein |
|
_____________174_____________________________200\n_____________|_______________________________|\n5'-CCU...AAUCC__________________________A____AAUGA...GGU-3'\n______________GCUAUGC_____UUUGAAAAAGGA_G_AAGA\n______________|||||||_____||::||||||||_|_||||\n______________CGAUACG_____AAGUUUUUUCCU_C_UUCU\n3'-UUU...UAACA_______UCAUU____________U_A____GUUAU...ACG-5'\n_____________|_______________________________|\n_____________77______________________________45\n |
187 -- 193 |
53 -- 59 |
-23.3315 kcal/mol |
6.08708 kcal/mol |
5.27798 kcal/mol |
174 200@LB@ | |@LB@5'-CCU...AAUCC A AAUGA...GGU-3'@LB@ GCUAUGC UUUGAAAAAGGA G AAGA@LB@ ||||||| ||::|||||||| | ||||@LB@ CGAUACG AAGUUUUUUCCU C UUCU@LB@3'-UUU...UAACA UCAUU U A GUUAU...ACG-5'@LB@ | |@LB@ 77 45@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3315 kcal/mol@LB@Unfolding Energy - mRNA 6.08708 kcal/mol@LB@Unfolding Energy - sRNA 5.27798 kcal/mol@LB@@LB@Position - mRNA 175 -- 199@LB@Position - sRNA 46 -- 76@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 195 |
0.008697 |
0.1548 |
b0192 |
nlpE |
-11.98 |
0.034903 |
167 -- 206 |
41 -- 78 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166________________________________________207\n_____________|__________________________________________|\n5'-UCA...GCAAA____GCA_____CGGG___AA__________U__________AAAAA...CGC-3'\n______________GUGC___GCGGU____AAU__AAAGAAGGAA___GGAUGGUG\n______________||||___||:||____|||__|||:||||||___:||:::|:\n______________CACG___CGUCA____UUA__UUUUUUCCUU___UCUGUUAU\n3'-UUU...GUUAA____AUA____________AG__________CAU________ACCUC...ACG-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
200 -- 206 |
41 -- 47 |
-26.7874 kcal/mol |
9.04038 kcal/mol |
5.77415 kcal/mol |
166 207@LB@ | |@LB@5'-UCA...GCAAA GCA CGGG AA U AAAAA...CGC-3'@LB@ GUGC GCGGU AAU AAAGAAGGAA GGAUGGUG@LB@ |||| ||:|| ||| |||:|||||| :||:::|:@LB@ CACG CGUCA UUA UUUUUUCCUU UCUGUUAU@LB@3'-UUU...GUUAA AUA AG CAU ACCUC...ACG-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -26.7874 kcal/mol@LB@Unfolding Energy - mRNA 9.04038 kcal/mol@LB@Unfolding Energy - sRNA 5.77415 kcal/mol@LB@@LB@Position - mRNA 167 -- 206@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 61 |
0.001027 |
0.05816 |
b0443 |
fadM |
-9.40 |
0.151451 |
193 -- 205 |
69 -- 81 |
long-chain acyl-CoA thioesterase III |
|
_____________192___________206\n_____________|_____________|\n5'-GUU...AGGUU____C________AACAC...AUG-3'\n______________AUUG_GCUAUGCA\n______________||||_||||||||\n______________UAAC_CGAUACGU\n3'-UUU...UUAGU____A________CAUUA...ACG-5'\n_____________|_____________|\n_____________82____________68\n |
199 -- 205 |
69 -- 75 |
-15.9471 kcal/mol |
4.72824 kcal/mol |
1.82028 kcal/mol |
192 206@LB@ | |@LB@5'-GUU...AGGUU C AACAC...AUG-3'@LB@ AUUG GCUAUGCA@LB@ |||| ||||||||@LB@ UAAC CGAUACGU@LB@3'-UUU...UUAGU A CAUUA...ACG-5'@LB@ | |@LB@ 82 68@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -15.9471 kcal/mol@LB@Unfolding Energy - mRNA 4.72824 kcal/mol@LB@Unfolding Energy - sRNA 1.82028 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 69 -- 81@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 101 |
0.003313 |
0.1114 |
b1193 |
emtA |
-10.98 |
0.063602 |
227 -- 257 |
55 -- 82 |
lytic murein endotransglycosylase E |
|
_____________226_____________________________258\n_____________|_______________________________|\n5'-UUG...UUUUU___________UA____GUU_____UC____CAUGA...UGC-3'\n______________GAUUGUGUUAU__GCGG___GUUCA__AAAG\n______________:||||||:|||__||:|___:||||__||||\n______________UUAACACGAUA__CGUC___UAAGU__UUUC\n3'-UUU...CUUAG_________________AU______UU____CUUCA...ACG-5'\n_____________|_______________________________|\n_____________83______________________________54\n |
231 -- 237 |
72 -- 78 |
-21.9468 kcal/mol |
7.33111 kcal/mol |
3.63929 kcal/mol |
226 258@LB@ | |@LB@5'-UUG...UUUUU UA GUU UC CAUGA...UGC-3'@LB@ GAUUGUGUUAU GCGG GUUCA AAAG@LB@ :||||||:||| ||:| :|||| ||||@LB@ UUAACACGAUA CGUC UAAGU UUUC@LB@3'-UUU...CUUAG AU UU CUUCA...ACG-5'@LB@ | |@LB@ 83 54@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -21.9468 kcal/mol@LB@Unfolding Energy - mRNA 7.33111 kcal/mol@LB@Unfolding Energy - sRNA 3.63929 kcal/mol@LB@@LB@Position - mRNA 227 -- 257@LB@Position - sRNA 55 -- 82@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 72 -- 78@LB@ |
