| 139 |
0.00529 |
0.1336 |
b3211 |
yhcC |
-9.14 |
0.172713 |
199 -- 227 |
39 -- 75 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________198___________________________________228\n_____________|_____________________________________|\n5'-UGC...UCAGA_________UA________UU________U_______UUUGG...GCC-3'\n______________UUAUGCAGU____CAGAAA________AG_CAAUAUG\n______________:||||||||____||:|||________||_|||||||\n______________GAUACGUCA____GUUUUU________UC_GUUAUAC\n3'-UUU...AACAC_________UUAA______UCCUUCAU__U_______CUCGC...ACG-5'\n_____________|_____________________________________|\n_____________76____________________________________38\n |
221 -- 227 |
39 -- 45 |
-19.1659 kcal/mol |
3.3824 kcal/mol |
6.6377 kcal/mol |
198 228@LB@ | |@LB@5'-UGC...UCAGA UA UU U UUUGG...GCC-3'@LB@ UUAUGCAGU CAGAAA AG CAAUAUG@LB@ :|||||||| ||:||| || |||||||@LB@ GAUACGUCA GUUUUU UC GUUAUAC@LB@3'-UUU...AACAC UUAA UCCUUCAU U CUCGC...ACG-5'@LB@ | |@LB@ 76 38@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -19.1659 kcal/mol@LB@Unfolding Energy - mRNA 3.3824 kcal/mol@LB@Unfolding Energy - sRNA 6.6377 kcal/mol@LB@@LB@Position - mRNA 199 -- 227@LB@Position - sRNA 39 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 181 |
0.007702 |
0.1499 |
b3145 |
yraK |
-8.82 |
0.202558 |
266 -- 280 |
35 -- 49 |
putative fimbrial-like adhesin protein |
b0533 b0941 |
_____________265_____________281\n_____________|_______________|\n5'-CGA...UCCUC____G__________CGACA...CGA-3'\n______________AGGA_GGUGUGGAGC\n______________|:||_::|:||||||\n______________UUCU_UUAUACCUCG\n3'-UUU...CUUCA____G__________CGUUG...ACG-5'\n_____________|_______________|\n_____________50______________34\n |
274 -- 280 |
35 -- 41 |
-19.5909 kcal/mol |
7.00879 kcal/mol |
3.74396 kcal/mol |
265 281@LB@ | |@LB@5'-CGA...UCCUC G CGACA...CGA-3'@LB@ AGGA GGUGUGGAGC@LB@ |:|| ::|:||||||@LB@ UUCU UUAUACCUCG@LB@3'-UUU...CUUCA G CGUUG...ACG-5'@LB@ | |@LB@ 50 34@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -19.5909 kcal/mol@LB@Unfolding Energy - mRNA 7.00879 kcal/mol@LB@Unfolding Energy - sRNA 3.74396 kcal/mol@LB@@LB@Position - mRNA 266 -- 280@LB@Position - sRNA 35 -- 49@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 157 |
0.006139 |
0.1377 |
b2347 |
yfdC |
-9.29 |
0.160067 |
171 -- 205 |
37 -- 76 |
putative inner membrane protein |
|
_____________170________________________________________206\n_____________|__________________________________________|\n5'-GCA...CUUUA_____AC___C_______________________C_______CAACG...UCC-3'\n______________GCUAU__GUG_UAAUUCAAGA___GAAG__AGAC___AUGGA\n______________|||||__|::_||||||||:|___||||__||||___|||||\n______________CGAUA__CGU_AUUAAGUUUU___CUUC__UCUG___UACCU\n3'-UUU...UAACA__________C__________UUC____AU____UUA_____CGCGU...ACG-5'\n_____________|__________________________________________|\n_____________77_________________________________________36\n |
185 -- 191 |
58 -- 64 |
-24.5838 kcal/mol |
7.63937 kcal/mol |
7.64142 kcal/mol |
170 206@LB@ | |@LB@5'-GCA...CUUUA AC C C CAACG...UCC-3'@LB@ GCUAU GUG UAAUUCAAGA GAAG AGAC AUGGA@LB@ ||||| |:: ||||||||:| |||| |||| |||||@LB@ CGAUA CGU AUUAAGUUUU CUUC UCUG UACCU@LB@3'-UUU...UAACA C UUC AU UUA CGCGU...ACG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -24.5838 kcal/mol@LB@Unfolding Energy - mRNA 7.63937 kcal/mol@LB@Unfolding Energy - sRNA 7.64142 kcal/mol@LB@@LB@Position - mRNA 171 -- 205@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 78 |
0.001866 |
0.08273 |
b2952 |
yggT |
-14.70 |
0.005634 |
84 -- 104 |
37 -- 56 |
putative inner membrane protein; compensates for loss in K+ uptake |
|
_____________83____________________105\n_____________|_____________________|\n5'-AGG...UCUCU_____U__C____________AGCCG...ACA-3'\n______________GGGAA_GU_GGACGAUAUGGA\n______________:||||_||_:|||:|||||||\n______________UCCUU_CA_UCUGUUAUACCU\n3'-UUU...UUUUU________U____________CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
98 -- 104 |
37 -- 43 |
-24.1681 kcal/mol |
5.76987 kcal/mol |
3.6645 kcal/mol |
83 105@LB@ | |@LB@5'-AGG...UCUCU U C AGCCG...ACA-3'@LB@ GGGAA GU GGACGAUAUGGA@LB@ :|||| || :|||:|||||||@LB@ UCCUU CA UCUGUUAUACCU@LB@3'-UUU...UUUUU U CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -24.1681 kcal/mol@LB@Unfolding Energy - mRNA 5.76987 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 84 -- 104@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 29 |
0.0001601 |
0.01945 |
b3472 |
dcrB |
-12.60 |
0.023536 |
186 -- 203 |
41 -- 59 |
putative lipoprotein |
|
_____________185_________________204\n_____________|___________________|\n5'-UGG...UUAUC_____________U_____CGCAA...UCG-3'\n______________GAAAGGAAG_AAG_CAAUG\n______________:||||||||_|||_||||:\n______________UUUUCCUUC_UUC_GUUAU\n3'-UUU...AAGUU_________A___U_____ACCUC...ACG-5'\n_____________|___________________|\n_____________60__________________40\n |
188 -- 194 |
51 -- 57 |
-16.362 kcal/mol |
1.80431 kcal/mol |
1.95655 kcal/mol |
185 204@LB@ | |@LB@5'-UGG...UUAUC U CGCAA...UCG-3'@LB@ GAAAGGAAG AAG CAAUG@LB@ :|||||||| ||| ||||:@LB@ UUUUCCUUC UUC GUUAU@LB@3'-UUU...AAGUU A U ACCUC...ACG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.362 kcal/mol@LB@Unfolding Energy - mRNA 1.80431 kcal/mol@LB@Unfolding Energy - sRNA 1.95655 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 75 |
0.001837 |
0.08273 |
b1816 |
yoaE |
-14.98 |
0.004573 |
118 -- 155 |
1 -- 35 |
putative membrane protein/conserved protein |
|
_____________117____________________________________156\n_____________|______________________________________|\n5'-GAU...CUCUA___C__A___U_______C__U___U____A_______AUUAU...UUC-3'\n______________UGC_GC_CCU_UCGUUUG_AU_UUG_CGUU_CGCCUGC\n______________:||_:|_||:_|||:|||_|:_|||_|:||_|:|||||\n______________GCG_UG_GGG_AGCGAAC_UG_AAC_GUAA_GUGGACG\n3'-UUU...ACCUC___U__C___U__________C________________-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
149 -- 155 |
1 -- 7 |
-36.6264 kcal/mol |
6.36146 kcal/mol |
15.286 kcal/mol |
117 156@LB@ | |@LB@5'-GAU...CUCUA C A U C U U A AUUAU...UUC-3'@LB@ UGC GC CCU UCGUUUG AU UUG CGUU CGCCUGC@LB@ :|| :| ||: |||:||| |: ||| |:|| |:|||||@LB@ GCG UG GGG AGCGAAC UG AAC GUAA GUGGACG@LB@3'-UUU...ACCUC U C U C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -36.6264 kcal/mol@LB@Unfolding Energy - mRNA 6.36146 kcal/mol@LB@Unfolding Energy - sRNA 15.286 kcal/mol@LB@@LB@Position - mRNA 118 -- 155@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 182 |
0.007798 |
0.1509 |
b3523 |
yhjE |
-11.78 |
0.039321 |
145 -- 165 |
64 -- 85 |
putative MFS transporter; membrane protein |
|
_____________144____________________166\n_____________|______________________|\n5'-AAC...GAAAU____C__U______________AUGGC...UUG-3'\n______________AUCA_UU_UGCUGUGC_GUAAU\n______________||||_||_||||:|||_|||||\n______________UAGU_AA_ACGAUACG_CAUUA\n3'-UUU...AUGCU____U__C________U_____AGUUU...ACG-5'\n_____________|______________________|\n_____________86_____________________63\n |
154 -- 160 |
70 -- 76 |
-18.5967 kcal/mol |
3.10692 kcal/mol |
3.70798 kcal/mol |
144 166@LB@ | |@LB@5'-AAC...GAAAU C U AUGGC...UUG-3'@LB@ AUCA UU UGCUGUGC GUAAU@LB@ |||| || ||||:||| |||||@LB@ UAGU AA ACGAUACG CAUUA@LB@3'-UUU...AUGCU U C U AGUUU...ACG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -18.5967 kcal/mol@LB@Unfolding Energy - mRNA 3.10692 kcal/mol@LB@Unfolding Energy - sRNA 3.70798 kcal/mol@LB@@LB@Position - mRNA 145 -- 165@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 90 |
0.002477 |
0.09689 |
b4020 |
yjbB |
-17.01 |
0.000941 |
168 -- 222 |
1 -- 56 |
putative Na+/Pi-cotransporter |
|
_____________167________________________________________________________223\n_____________|__________________________________________________________|\n5'-UCC...GCUUC_____CA__UA______A____AACC___AA______GUUA___C_____________UUUCU...UGC-3'\n______________AGGAA__UA__ACGAUA_GGAG_____UG__C_UCGU____ACG_UGC_UUCACCUGC\n______________|||||__||__||:|||_||||_____:|__|_|||:____|||_|||_|||||||||\n______________UCCUU__AU__UGUUAU_CCUC_____GC__G_AGCG____UGC_ACG_AAGUGGACG\n3'-UUU...UUUUU_____C___UC______A____GCGUU__GG_U____AAC____A___U_________-5'\n_____________|_________________________________________________________|\n_____________57________________________________________________________1\n |
216 -- 222 |
1 -- 7 |
-44.3986 kcal/mol |
10.5518 kcal/mol |
16.8439 kcal/mol |
167 223@LB@ | |@LB@5'-UCC...GCUUC CA UA A AACC AA GUUA C UUUCU...UGC-3'@LB@ AGGAA UA ACGAUA GGAG UG C UCGU ACG UGC UUCACCUGC@LB@ ||||| || ||:||| |||| :| | |||: ||| ||| |||||||||@LB@ UCCUU AU UGUUAU CCUC GC G AGCG UGC ACG AAGUGGACG@LB@3'-UUU...UUUUU C UC A GCGUU GG U AAC A U -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -44.3986 kcal/mol@LB@Unfolding Energy - mRNA 10.5518 kcal/mol@LB@Unfolding Energy - sRNA 16.8439 kcal/mol@LB@@LB@Position - mRNA 168 -- 222@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 132 |
0.004965 |
0.1313 |
b0876 |
ybjD |
-10.35 |
0.091015 |
20 -- 74 |
49 -- 93 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________19______________________________________________________75\n_____________|_______________________________________________________|\n5'-CGU...AUUUA__A___U_____U___AUUU_____UUUU_____ACUUA____C___________UAACG...GGG-3'\n______________UC_UGC_AAUUA_UUG____UGUUG____UGCAG_____UCAG_AAGAGGGAGUA\n______________||_|:|_|||:|_|||____||:|:____|||||_____|||:_||:|||:||||\n______________AG_AUG_UUAGU_AAC____ACGAU____ACGUC_____AGUU_UUUUCCUUCAU\n3'-UUU...GCCGC__C___C_____U_____________________AUUA_________________UCUGU...ACG-5'\n_____________|_______________________________________________________|\n_____________94______________________________________________________48\n |
68 -- 74 |
49 -- 55 |
-28.5607 kcal/mol |
13.348 kcal/mol |
4.86987 kcal/mol |
19 75@LB@ | |@LB@5'-CGU...AUUUA A U U AUUU UUUU ACUUA C UAACG...GGG-3'@LB@ UC UGC AAUUA UUG UGUUG UGCAG UCAG AAGAGGGAGUA@LB@ || |:| |||:| ||| ||:|: ||||| |||: ||:|||:||||@LB@ AG AUG UUAGU AAC ACGAU ACGUC AGUU UUUUCCUUCAU@LB@3'-UUU...GCCGC C C U AUUA UCUGU...ACG-5'@LB@ | |@LB@ 94 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.5607 kcal/mol@LB@Unfolding Energy - mRNA 13.348 kcal/mol@LB@Unfolding Energy - sRNA 4.86987 kcal/mol@LB@@LB@Position - mRNA 20 -- 74@LB@Position - sRNA 49 -- 93@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 88 |
0.002437 |
0.09689 |
b0940 |
elfC |
-8.14 |
0.278491 |
92 -- 131 |
23 -- 58 |
putative outer membrane fimbrial subunit export usher protein |
b3144 b0532 b4317 |
_____________91_________________________________________132\n_____________|__________________________________________|\n5'-AUU...CUGCC________CCAAA_____GC___________AUCGAA_____AAUGA...CAC-3'\n______________AAAGGGGG______AAUA___AGCGUAACGU______CCAUC\n______________|||||::|______||||___||||:||||:______|||||\n______________UUUCCUUC______UUAU___UCGCGUUGCG______GGUAG\n3'-UUU...AGUUU________AUUCUG____ACC_____________________CGAAC...ACG-5'\n_____________|__________________________________________|\n_____________59_________________________________________22\n |
112 -- 118 |
30 -- 36 |
-29.3003 kcal/mol |
7.72593 kcal/mol |
13.4354 kcal/mol |
91 132@LB@ | |@LB@5'-AUU...CUGCC CCAAA GC AUCGAA AAUGA...CAC-3'@LB@ AAAGGGGG AAUA AGCGUAACGU CCAUC@LB@ |||||::| |||| ||||:||||: |||||@LB@ UUUCCUUC UUAU UCGCGUUGCG GGUAG@LB@3'-UUU...AGUUU AUUCUG ACC CGAAC...ACG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -29.3003 kcal/mol@LB@Unfolding Energy - mRNA 7.72593 kcal/mol@LB@Unfolding Energy - sRNA 13.4354 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 30 -- 36@LB@ |
