7 |
8.167e-06 |
0.003921 |
b1531 |
marA |
-12.70 |
0.022098 |
183 -- 204 |
40 -- 62 |
multiple antibiotic resistance transcriptional regulator |
|
_____________182_____________________205\n_____________|_______________________|\n5'-AAG...GUAAA______________U________CCAGA...AGC-3'\n______________CAAAAAA_GAGGUA_GACGAUGU\n______________|||||||_||:|||_|||:||:|\n______________GUUUUUU_CUUCAU_CUGUUAUA\n3'-UUU...AUUAA_______C______U________CCUCG...ACG-5'\n_____________|_______________________|\n_____________63______________________39\n |
198 -- 204 |
40 -- 46 |
-19.9636 kcal/mol |
3.18051 kcal/mol |
4.08673 kcal/mol |
182 205@LB@ | |@LB@5'-AAG...GUAAA U CCAGA...AGC-3'@LB@ CAAAAAA GAGGUA GACGAUGU@LB@ ||||||| ||:||| |||:||:|@LB@ GUUUUUU CUUCAU CUGUUAUA@LB@3'-UUU...AUUAA C U CCUCG...ACG-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -19.9636 kcal/mol@LB@Unfolding Energy - mRNA 3.18051 kcal/mol@LB@Unfolding Energy - sRNA 4.08673 kcal/mol@LB@@LB@Position - mRNA 183 -- 204@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 40 -- 46@LB@ |
63 |
0.00104 |
0.05816 |
b1856 |
mepM |
-14.49 |
0.006560 |
139 -- 249 |
1 -- 88 |
murein DD-endopeptidase space-maker hydrolase septation protein |
|
_____________138________________________________________________________________________________________________________________250\n_____________|__________________________________________________________________________________________________________________|\n5'-CAA...AUUCC__________A___CAACCAG______AGCUGCCU_________AU___U__G__A___AUUAC_______AGAUA____GCUCU_____CC_______UAAUA__________GACCA...UCG-3'\n______________UGAGUCAAUU__GC_______UAUGCG_________GAAAGGAG__UAA_GA_GA_GUG_____GUGCAAC_____GCCC_____GUCGC__UGGCGUU_____AUUUACC_GC\n______________:||:||||||__||_______|||||:_________:||||||:__|||_||_:|_:||_____|:|||||_____||||_____:||||__||:||||_____|||:|||_||\n______________GCUUAGUUAA__CG_______AUACGU_________UUUUCCUU__AUU_CU_UU_UAC_____CGCGUUG_____CGGG_____UAGCG__ACUGCAA_____UAAGUGG_CG\n3'-UUU...AGCAU__________CA_______________CAUUAAGUU________C_______G__A___CU_____________________________A________CG__________A__-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________89________________________________________________________________________________________________________________1\n |
241 -- 247 |
4 -- 10 |
-60.5282 kcal/mol |
25.2709 kcal/mol |
20.7761 kcal/mol |
138 250@LB@ | |@LB@5'-CAA...AUUCC A CAACCAG AGCUGCCU AU U G A AUUAC AGAUA GCUCU CC UAAUA GACCA...UCG-3'@LB@ UGAGUCAAUU GC UAUGCG GAAAGGAG UAA GA GA GUG GUGCAAC GCCC GUCGC UGGCGUU AUUUACC GC@LB@ :||:|||||| || |||||: :||||||: ||| || :| :|| |:||||| |||| :|||| ||:|||| |||:||| ||@LB@ GCUUAGUUAA CG AUACGU UUUUCCUU AUU CU UU UAC CGCGUUG CGGG UAGCG ACUGCAA UAAGUGG CG@LB@3'-UUU...AGCAU CA CAUUAAGUU C G A CU A CG A -5'@LB@ | |@LB@ 89 1@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -60.5282 kcal/mol@LB@Unfolding Energy - mRNA 25.2709 kcal/mol@LB@Unfolding Energy - sRNA 20.7761 kcal/mol@LB@@LB@Position - mRNA 139 -- 249@LB@Position - sRNA 1 -- 88@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 4 -- 10@LB@ |
52 |
0.0006076 |
0.04117 |
b1119 |
nagK |
-11.33 |
0.051615 |
175 -- 204 |
40 -- 71 |
N-acetyl-D-glucosamine kinase |
|
_____________174_______________________________205\n_____________|_________________________________|\n5'-UCA...UAAAG______CA______C______C___________AUUAC...GUG-3'\n______________GCAGUA__UUAAAA_AAGGAG____GGCAAUGU\n______________||||||__|:||||_|||||:____|:||||:|\n______________CGUCAU__AGUUUU_UUCCUU____CUGUUAUA\n3'-UUU...CGAUA______UA_____________CAUU________CCUCG...ACG-5'\n_____________|_________________________________|\n_____________72________________________________39\n |
197 -- 203 |
41 -- 47 |
-22.8361 kcal/mol |
5.88825 kcal/mol |
5.61718 kcal/mol |
174 205@LB@ | |@LB@5'-UCA...UAAAG CA C C AUUAC...GUG-3'@LB@ GCAGUA UUAAAA AAGGAG GGCAAUGU@LB@ |||||| |:|||| |||||: |:||||:|@LB@ CGUCAU AGUUUU UUCCUU CUGUUAUA@LB@3'-UUU...CGAUA UA CAUU CCUCG...ACG-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -22.8361 kcal/mol@LB@Unfolding Energy - mRNA 5.88825 kcal/mol@LB@Unfolding Energy - sRNA 5.61718 kcal/mol@LB@@LB@Position - mRNA 175 -- 204@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
46 |
0.0004731 |
0.03623 |
b2279 |
nuoK |
-14.07 |
0.008802 |
136 -- 157 |
69 -- 92 |
NADH:ubiquinone oxidoreductase membrane subunit K |
|
_____________135______________________158\n_____________|________________________|\n5'-GGU...AAGAG_________G__________A___AUCGU...UUG-3'\n______________CGUGCGGGU_AA__GUGCUG_GCA\n______________|||:||::|_||__|||||:_|||\n______________GCAUGCUUA_UU__CACGAU_CGU\n3'-UUU...CCGCA_________G__AA______A___CAUUA...ACG-5'\n_____________|________________________|\n_____________93_______________________68\n |
138 -- 144 |
84 -- 90 |
-25.4547 kcal/mol |
6.72556 kcal/mol |
4.66371 kcal/mol |
135 158@LB@ | |@LB@5'-GGU...AAGAG G A AUCGU...UUG-3'@LB@ CGUGCGGGU AA GUGCUG GCA@LB@ |||:||::| || |||||: |||@LB@ GCAUGCUUA UU CACGAU CGU@LB@3'-UUU...CCGCA G AA A CAUUA...ACG-5'@LB@ | |@LB@ 93 68@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -25.4547 kcal/mol@LB@Unfolding Energy - mRNA 6.72556 kcal/mol@LB@Unfolding Energy - sRNA 4.66371 kcal/mol@LB@@LB@Position - mRNA 136 -- 157@LB@Position - sRNA 69 -- 92@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 84 -- 90@LB@ |
96 |
0.002937 |
0.1078 |
b1539 |
ydfG |
-11.63 |
0.043083 |
159 -- 205 |
42 -- 78 |
NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase |
|
_____________158_____________________________________________206\n_____________|_______________________________________________|\n5'-GAU...AUCCC_________UAUUGACACA_____GCGUU_____AC___________CGUUU...GCC-3'\n______________GUGCUAUGU__________CAAAA_____GAGGA__AGUGAGAUGAU\n______________||||||||:__________|||||_____:||||__|||:|||::||\n______________CACGAUACG__________GUUUU_____UUCCU__UCAUUCUGUUA\n3'-UUU...GUUAA_________UCAUUAA_______________________________UACCU...ACG-5'\n_____________|_______________________________________________|\n_____________79______________________________________________41\n |
199 -- 205 |
42 -- 48 |
-28.6775 kcal/mol |
11.4217 kcal/mol |
5.62659 kcal/mol |
158 206@LB@ | |@LB@5'-GAU...AUCCC UAUUGACACA GCGUU AC CGUUU...GCC-3'@LB@ GUGCUAUGU CAAAA GAGGA AGUGAGAUGAU@LB@ ||||||||: ||||| :|||| |||:|||::||@LB@ CACGAUACG GUUUU UUCCU UCAUUCUGUUA@LB@3'-UUU...GUUAA UCAUUAA UACCU...ACG-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -28.6775 kcal/mol@LB@Unfolding Energy - mRNA 11.4217 kcal/mol@LB@Unfolding Energy - sRNA 5.62659 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
186 |
0.008102 |
0.1535 |
b1768 |
pncA |
-9.42 |
0.149628 |
191 -- 212 |
21 -- 39 |
nicotinamidase/pyrazinamidase |
|
_____________190____________________213\n_____________|______________________|\n5'-UAA...AUUAA____A_U_________CC____GCCCU...CUA-3'\n______________GGAG_C_GUAAUGCCC__UCGC\n______________||||_|_|:||:||||__||||\n______________CCUC_G_CGUUGCGGG__AGCG\n3'-UUU...UUAUA________________U_____AACUG...ACG-5'\n_____________|______________________|\n_____________40_____________________20\n |
200 -- 206 |
26 -- 32 |
-26.7187 kcal/mol |
5.14291 kcal/mol |
12.1569 kcal/mol |
190 213@LB@ | |@LB@5'-UAA...AUUAA A U CC GCCCU...CUA-3'@LB@ GGAG C GUAAUGCCC UCGC@LB@ |||| | |:||:|||| ||||@LB@ CCUC G CGUUGCGGG AGCG@LB@3'-UUU...UUAUA U AACUG...ACG-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -26.7187 kcal/mol@LB@Unfolding Energy - mRNA 5.14291 kcal/mol@LB@Unfolding Energy - sRNA 12.1569 kcal/mol@LB@@LB@Position - mRNA 191 -- 212@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 26 -- 32@LB@ |
5 |
2.521e-06 |
0.001776 |
b3365 |
nirB |
-15.77 |
0.002536 |
156 -- 206 |
35 -- 88 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________155____________________________________________________207\n_____________|______________________________________________________|\n5'-AUC...GUUGC_______UUAA__G__G_________________A__UC_______AAAU____AAAGU...UUA-3'\n______________UGAAUCG_____G_UA_GCGGUAAU__AGAAAAG_AA__GAGGCAA____GAGC\n______________:|||||:_____|_||_||:|||||__|:|||||_||__:||:|||____||||\n______________GCUUAGU_____C_AU_CGUCAUUA__UUUUUUC_UU__UUCUGUU____CUCG\n3'-UUU...AGCAU_______UAACA_G__A________AG_______C__CA_______AUAC____CGUUG...ACG-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________34\n |
192 -- 198 |
43 -- 49 |
-31.7984 kcal/mol |
7.74851 kcal/mol |
8.27555 kcal/mol |
155 207@LB@ | |@LB@5'-AUC...GUUGC UUAA G G A UC AAAU AAAGU...UUA-3'@LB@ UGAAUCG G UA GCGGUAAU AGAAAAG AA GAGGCAA GAGC@LB@ :|||||: | || ||:||||| |:||||| || :||:||| ||||@LB@ GCUUAGU C AU CGUCAUUA UUUUUUC UU UUCUGUU CUCG@LB@3'-UUU...AGCAU UAACA G A AG C CA AUAC CGUUG...ACG-5'@LB@ | |@LB@ 89 34@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -31.7984 kcal/mol@LB@Unfolding Energy - mRNA 7.74851 kcal/mol@LB@Unfolding Energy - sRNA 8.27555 kcal/mol@LB@@LB@Position - mRNA 156 -- 206@LB@Position - sRNA 35 -- 88@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 43 -- 49@LB@ |
178 |
0.007484 |
0.1481 |
b1243 |
oppA |
-9.58 |
0.138030 |
24 -- 34 |
81 -- 91 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________23__________35\n_____________|___________|\n5'-UGU...ACACA___________CAUAA...UCA-3'\n______________GUACGAAUCGA\n______________|||||||||:|\n______________CAUGCUUAGUU\n3'-UUU...CGCAG___________AACAC...ACG-5'\n_____________|___________|\n_____________92__________80\n |
28 -- 34 |
81 -- 87 |
-14.5847 kcal/mol |
2.82098 kcal/mol |
2.19089 kcal/mol |
23 35@LB@ | |@LB@5'-UGU...ACACA CAUAA...UCA-3'@LB@ GUACGAAUCGA@LB@ |||||||||:|@LB@ CAUGCUUAGUU@LB@3'-UUU...CGCAG AACAC...ACG-5'@LB@ | |@LB@ 92 80@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.5847 kcal/mol@LB@Unfolding Energy - mRNA 2.82098 kcal/mol@LB@Unfolding Energy - sRNA 2.19089 kcal/mol@LB@@LB@Position - mRNA 24 -- 34@LB@Position - sRNA 81 -- 91@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 81 -- 87@LB@ |
50 |
0.0005726 |
0.04013 |
b2215 |
ompC |
-10.22 |
0.097386 |
138 -- 180 |
44 -- 87 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________137___________________________________________181\n_____________|_____________________________________________|\n5'-AUC...AAUGA________CAG____________CA________CAAAUA______UAUAA...AUC-3'\n______________GGGUUAAU_____UAUGCAGUGG__UAAAAAAG______AAGGCA\n______________|::|:|||_____||||||||::__:|||||||______|||:||\n______________CUUAGUUA_____AUACGUCAUU__GUUUUUUC______UUCUGU\n3'-UUU...GCAUG________ACACG__________AA________CUUCA_______UAUAC...ACG-5'\n_____________|_____________________________________________|\n_____________88____________________________________________43\n |
162 -- 168 |
55 -- 61 |
-25.937 kcal/mol |
10.0096 kcal/mol |
5.70573 kcal/mol |
137 181@LB@ | |@LB@5'-AUC...AAUGA CAG CA CAAAUA UAUAA...AUC-3'@LB@ GGGUUAAU UAUGCAGUGG UAAAAAAG AAGGCA@LB@ |::|:||| ||||||||:: :||||||| |||:||@LB@ CUUAGUUA AUACGUCAUU GUUUUUUC UUCUGU@LB@3'-UUU...GCAUG ACACG AA CUUCA UAUAC...ACG-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -25.937 kcal/mol@LB@Unfolding Energy - mRNA 10.0096 kcal/mol@LB@Unfolding Energy - sRNA 5.70573 kcal/mol@LB@@LB@Position - mRNA 138 -- 180@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 55 -- 61@LB@ |
148 |
0.005829 |
0.1368 |
b2962 |
yggX |
-8.12 |
0.280656 |
21 -- 35 |
68 -- 81 |
oxidative damage protective factor for iron-sulfur proteins |
|
_____________20______________36\n_____________|_______________|\n5'-UCA...UAGAU______C________CUUCC...AGA-3'\n______________AUUGUG_CUAUGUGG\n______________||||||_|||||::|\n______________UAACAC_GAUACGUC\n3'-UUU...UUAGU_______________AUUAA...ACG-5'\n_____________|_______________|\n_____________82______________67\n |
28 -- 34 |
69 -- 75 |
-14.4611 kcal/mol |
4.51468 kcal/mol |
1.82249 kcal/mol |
20 36@LB@ | |@LB@5'-UCA...UAGAU C CUUCC...AGA-3'@LB@ AUUGUG CUAUGUGG@LB@ |||||| |||||::|@LB@ UAACAC GAUACGUC@LB@3'-UUU...UUAGU AUUAA...ACG-5'@LB@ | |@LB@ 82 67@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -14.4611 kcal/mol@LB@Unfolding Energy - mRNA 4.51468 kcal/mol@LB@Unfolding Energy - sRNA 1.82249 kcal/mol@LB@@LB@Position - mRNA 21 -- 35@LB@Position - sRNA 68 -- 81@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 69 -- 75@LB@ |