136 |
0.005087 |
0.1318 |
b3057 |
bacA |
-11.47 |
0.047548 |
153 -- 174 |
49 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________152_____________________175\n_____________|_______________________|\n5'-UUC...CAUAC_____________C___C_____CAUUU...UUG-3'\n______________GCAGUAGUUCGGA_AAG__GGUA\n______________||||||:|||::|_|||__:|||\n______________CGUCAUUAAGUUU_UUC__UCAU\n3'-UUU...CGAUA_____________U___CU____UCUGU...ACG-5'\n_____________|_______________________|\n_____________72______________________48\n |
156 -- 162 |
62 -- 68 |
-21.4579 kcal/mol |
5.97 kcal/mol |
4.02052 kcal/mol |
152 175@LB@ | |@LB@5'-UUC...CAUAC C C CAUUU...UUG-3'@LB@ GCAGUAGUUCGGA AAG GGUA@LB@ ||||||:|||::| ||| :|||@LB@ CGUCAUUAAGUUU UUC UCAU@LB@3'-UUU...CGAUA U CU UCUGU...ACG-5'@LB@ | |@LB@ 72 48@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -21.4579 kcal/mol@LB@Unfolding Energy - mRNA 5.97 kcal/mol@LB@Unfolding Energy - sRNA 4.02052 kcal/mol@LB@@LB@Position - mRNA 153 -- 174@LB@Position - sRNA 49 -- 71@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
103 |
0.003335 |
0.1114 |
b3494 |
uspB |
-9.88 |
0.117554 |
193 -- 207 |
43 -- 57 |
universal stress (ethanol tolerance) protein B |
|
_____________192_____________208\n_____________|_______________|\n5'-AAU...CCGGG_________U_____GCACC...UGC-3'\n______________GAGGAGGUA_GAUAA\n______________:||||:|||_||:||\n______________UUCCUUCAU_CUGUU\n3'-UUU...GUUUU_________U_____AUACC...ACG-5'\n_____________|_______________|\n_____________58______________42\n |
195 -- 201 |
49 -- 55 |
-16.0492 kcal/mol |
4.41466 kcal/mol |
1.75421 kcal/mol |
192 208@LB@ | |@LB@5'-AAU...CCGGG U GCACC...UGC-3'@LB@ GAGGAGGUA GAUAA@LB@ :||||:||| ||:||@LB@ UUCCUUCAU CUGUU@LB@3'-UUU...GUUUU U AUACC...ACG-5'@LB@ | |@LB@ 58 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -16.0492 kcal/mol@LB@Unfolding Energy - mRNA 4.41466 kcal/mol@LB@Unfolding Energy - sRNA 1.75421 kcal/mol@LB@@LB@Position - mRNA 193 -- 207@LB@Position - sRNA 43 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 49 -- 55@LB@ |
194 |
0.008684 |
0.1548 |
b1242 |
ychE |
-7.20 |
0.413978 |
105 -- 113 |
48 -- 56 |
UPF0056 family inner membrane protein |
|
_____________104_______114\n_____________|_________|\n5'-CAU...UAGUU_________AAAAU...GCA-3'\n______________AGGAGGUGA\n______________||||:||:|\n______________UCCUUCAUU\n3'-UUU...UUUUU_________CUGUU...ACG-5'\n_____________|_________|\n_____________57________47\n |
107 -- 113 |
48 -- 54 |
-10.6218 kcal/mol |
2.70901 kcal/mol |
0.718267 kcal/mol |
104 114@LB@ | |@LB@5'-CAU...UAGUU AAAAU...GCA-3'@LB@ AGGAGGUGA@LB@ ||||:||:|@LB@ UCCUUCAUU@LB@3'-UUU...UUUUU CUGUU...ACG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -10.6218 kcal/mol@LB@Unfolding Energy - mRNA 2.70901 kcal/mol@LB@Unfolding Energy - sRNA 0.718267 kcal/mol@LB@@LB@Position - mRNA 105 -- 113@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 48 -- 54@LB@ |
180 |
0.007638 |
0.1495 |
b2007 |
yeeX |
-12.65 |
0.022752 |
43 -- 93 |
41 -- 87 |
UPF0265 family protein |
|
_____________42____________________________________________________94\n_____________|_____________________________________________________|\n5'-AUC...CUUCA______UCU______C___UUC_______C______UAAAG____U_______AAAAG...AAA-3'\n______________GAAUCA____UGCUG_UGC___GAUUCAG__AAGGA_____GGUA_GAUAGUG\n______________||||||____||||:_|||___:|||||:__|||||_____:|||_||:|:|:\n______________CUUAGU____ACGAU_ACG___UUAAGUU__UUCCU_____UCAU_CUGUUAU\n3'-UUU...GCAUG______UAAC_________UCA_______UU______________U_______ACCUC...ACG-5'\n_____________|_____________________________________________________|\n_____________88____________________________________________________40\n |
87 -- 93 |
41 -- 47 |
-32.6236 kcal/mol |
14.1148 kcal/mol |
5.85929 kcal/mol |
42 94@LB@ | |@LB@5'-AUC...CUUCA UCU C UUC C UAAAG U AAAAG...AAA-3'@LB@ GAAUCA UGCUG UGC GAUUCAG AAGGA GGUA GAUAGUG@LB@ |||||| ||||: ||| :|||||: ||||| :||| ||:|:|:@LB@ CUUAGU ACGAU ACG UUAAGUU UUCCU UCAU CUGUUAU@LB@3'-UUU...GCAUG UAAC UCA UU U ACCUC...ACG-5'@LB@ | |@LB@ 88 40@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -32.6236 kcal/mol@LB@Unfolding Energy - mRNA 14.1148 kcal/mol@LB@Unfolding Energy - sRNA 5.85929 kcal/mol@LB@@LB@Position - mRNA 43 -- 93@LB@Position - sRNA 41 -- 87@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 41 -- 47@LB@ |
16 |
3.593e-05 |
0.007912 |
b2294 |
yfbU |
-10.97 |
0.063921 |
276 -- 297 |
1 -- 22 |
UPF0304 family protein |
|
_____________275____________________298\n_____________|______________________|\n5'-GCA...CAAAU___GA_____ACCG________AAA-3'\n______________GCU__ACGUU____UCGCCUGC\n______________|||__|||||____||:|||||\n______________CGA__UGCAA____AGUGGACG\n3'-UUU...GGUAG___AC_____CGUA________-5'\n_____________|_____________________|\n_____________23____________________1\n |
291 -- 297 |
1 -- 7 |
-25.1893 kcal/mol |
6.12655 kcal/mol |
8.09964 kcal/mol |
275 298@LB@ | |@LB@5'-GCA...CAAAU GA ACCG AAA-3'@LB@ GCU ACGUU UCGCCUGC@LB@ ||| ||||| ||:|||||@LB@ CGA UGCAA AGUGGACG@LB@3'-UUU...GGUAG AC CGUA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.97 kcal/mol@LB@Hybridization Energy -25.1893 kcal/mol@LB@Unfolding Energy - mRNA 6.12655 kcal/mol@LB@Unfolding Energy - sRNA 8.09964 kcal/mol@LB@@LB@Position - mRNA 276 -- 297@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 1 -- 7@LB@ |
113 |
0.00365 |
0.1131 |
b3154 |
yhbP |
-10.91 |
0.065979 |
249 -- 297 |
26 -- 85 |
UPF0306 family protein |
|
_____________248___________________________________________________________298\n_____________|_____________________________________________________________|\n5'-AAA...AUGUU____C___GUG_______C_____________________ACUC____U____U_______UUU-3'\n______________GUCA_UUG___UGUGCAG___________AGGAAG_GGGA_____UGG_GCGC_AAUGCCU\n______________:|||_|||___|:|||||___________||||||_::||_____|||_||||_||:|||:\n______________UAGU_AAC___AUACGUC___________UCCUUC_UUCU_____ACC_CGCG_UUGCGGG\n3'-UUU...AUGCU____U___ACG_______AUUAAGUUUUU______A____GUUAU___U____________UAGCG...ACG-5'\n_____________|_____________________________________________________________|\n_____________86____________________________________________________________25\n |
260 -- 266 |
68 -- 74 |
-42.816 kcal/mol |
18.2405 kcal/mol |
13.6657 kcal/mol |
248 298@LB@ | |@LB@5'-AAA...AUGUU C GUG C ACUC U U UUU-3'@LB@ GUCA UUG UGUGCAG AGGAAG GGGA UGG GCGC AAUGCCU@LB@ :||| ||| |:||||| |||||| ::|| ||| |||| ||:|||:@LB@ UAGU AAC AUACGUC UCCUUC UUCU ACC CGCG UUGCGGG@LB@3'-UUU...AUGCU U ACG AUUAAGUUUUU A GUUAU U UAGCG...ACG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -42.816 kcal/mol@LB@Unfolding Energy - mRNA 18.2405 kcal/mol@LB@Unfolding Energy - sRNA 13.6657 kcal/mol@LB@@LB@Position - mRNA 249 -- 297@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 68 -- 74@LB@ |
129 |
0.00462 |
0.126 |
b1795 |
yeaQ |
-13.29 |
0.014930 |
139 -- 150 |
70 -- 81 |
UPF0410 family protein |
|
_____________138__________151\n_____________|____________|\n5'-AUA...CCGAU____________UUUUU...UCC-3'\n______________GUUGUGCUAUGC\n______________:|||||||||||\n______________UAACACGAUACG\n3'-UUU...UUAGU____________UCAUU...ACG-5'\n_____________|____________|\n_____________82___________69\n |
144 -- 150 |
70 -- 76 |
-18.6071 kcal/mol |
3.49189 kcal/mol |
1.8201 kcal/mol |
138 151@LB@ | |@LB@5'-AUA...CCGAU UUUUU...UCC-3'@LB@ GUUGUGCUAUGC@LB@ :|||||||||||@LB@ UAACACGAUACG@LB@3'-UUU...UUAGU UCAUU...ACG-5'@LB@ | |@LB@ 82 69@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -18.6071 kcal/mol@LB@Unfolding Energy - mRNA 3.49189 kcal/mol@LB@Unfolding Energy - sRNA 1.8201 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 70 -- 81@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 70 -- 76@LB@ |
105 |
0.003386 |
0.1114 |
b0517 |
allD |
-12.14 |
0.031589 |
151 -- 204 |
43 -- 92 |
ureidoglycolate dehydrogenase |
b0801 |
_____________150______________________________________________________205\n_____________|________________________________________________________|\n5'-AAA...UUCCC_______________CA__C____UUCACACCG___UU__________AC______AAAUC...UGG-3'\n______________UGUAUG__UUAAUUG__GU_AUGC_________UCG__AAAAAGGAAG__AGAUGA\n______________:|||:|__|:|||||__|:_||||_________||:__||||||||||__|||::|\n______________GCAUGC__AGUUAAC__CG_UACG_________AGU__UUUUUCCUUC__UCUGUU\n3'-UUU...CCGCA______UU_______A___A____UCAUUA__________________AU______AUACC...ACG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________42\n |
190 -- 196 |
51 -- 57 |
-28.1957 kcal/mol |
10.2009 kcal/mol |
5.86211 kcal/mol |
150 205@LB@ | |@LB@5'-AAA...UUCCC CA C UUCACACCG UU AC AAAUC...UGG-3'@LB@ UGUAUG UUAAUUG GU AUGC UCG AAAAAGGAAG AGAUGA@LB@ :|||:| |:||||| |: |||| ||: |||||||||| |||::|@LB@ GCAUGC AGUUAAC CG UACG AGU UUUUUCCUUC UCUGUU@LB@3'-UUU...CCGCA UU A A UCAUUA AU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -28.1957 kcal/mol@LB@Unfolding Energy - mRNA 10.2009 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 151 -- 204@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
84 |
0.001972 |
0.08273 |
b0968 |
yccX |
-8.34 |
0.253881 |
183 -- 226 |
2 -- 49 |
weak acylphosphatase |
|
_____________182_________________________________________________227\n_____________|___________________________________________________|\n5'-GGC...CAUUA_______GGA_____A________G_AA__C___________AA_______GGUUU...CCG-3'\n______________AGGAUAA____GAGC_GCAAUGUC_A__GU_______UGCAU__UUGCCUG\n______________|:||:||____||||_||||:|:|_|__|:_______|||||__|::||||\n______________UUCUGUU____CUCG_CGUUGCGG_U__CG_______ACGUA__AGUGGAC\n3'-UUU...CUUCA_______AUAC_____________G_AG__AACUGCA______________G-5'\n_____________|___________________________________________________|\n_____________50__________________________________________________1\n |
220 -- 226 |
2 -- 8 |
-35.2137 kcal/mol |
10.0937 kcal/mol |
16.7804 kcal/mol |
182 227@LB@ | |@LB@5'-GGC...CAUUA GGA A G AA C AA GGUUU...CCG-3'@LB@ AGGAUAA GAGC GCAAUGUC A GU UGCAU UUGCCUG@LB@ |:||:|| |||| ||||:|:| | |: ||||| |::||||@LB@ UUCUGUU CUCG CGUUGCGG U CG ACGUA AGUGGAC@LB@3'-UUU...CUUCA AUAC G AG AACUGCA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -35.2137 kcal/mol@LB@Unfolding Energy - mRNA 10.0937 kcal/mol@LB@Unfolding Energy - sRNA 16.7804 kcal/mol@LB@@LB@Position - mRNA 183 -- 226@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 2 -- 8@LB@ |
177 |
0.007289 |
0.1451 |
b4002 |
zraP |
-14.65 |
0.005839 |
172 -- 192 |
36 -- 54 |
Zn-dependent periplasmic chaperone |
|
_____________171___________________193\n_____________|_____________________|\n5'-AAU...UACCC____________CCAC_____GAUUA...GGC-3'\n______________GAAGUAAGACAA____UGGAG\n______________||||||||||||____|||||\n______________CUUCAUUCUGUU____ACCUC\n3'-UUU...UUUUC____________AU_______GCGUU...ACG-5'\n_____________|_____________________|\n_____________55____________________35\n |
177 -- 183 |
43 -- 49 |
-21.9873 kcal/mol |
3.76916 kcal/mol |
3.53499 kcal/mol |
171 193@LB@ | |@LB@5'-AAU...UACCC CCAC GAUUA...GGC-3'@LB@ GAAGUAAGACAA UGGAG@LB@ |||||||||||| |||||@LB@ CUUCAUUCUGUU ACCUC@LB@3'-UUU...UUUUC AU GCGUU...ACG-5'@LB@ | |@LB@ 55 35@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -21.9873 kcal/mol@LB@Unfolding Energy - mRNA 3.76916 kcal/mol@LB@Unfolding Energy - sRNA 3.53499 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 36 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 43 -- 49@LB@ |