154 |
0.005979 |
0.1368 |
b4136 |
dsbD |
-7.81 |
0.321864 |
41 -- 58 |
35 -- 56 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________40______________________59\n_____________|_______________________|\n5'-UGC...UUACU___A___________________AAGAA...CGG-3'\n______________GGG_AGGUAAG_C____UGGAGC\n______________:||_|:|||||_|____||||||\n______________UCC_UUCAUUC_G____ACCUCG\n3'-UUU...UUUUU___________U_UUAU______CGUUG...ACG-5'\n_____________|_______________________|\n_____________57______________________34\n |
45 -- 51 |
47 -- 53 |
-17.7247 kcal/mol |
5.71782 kcal/mol |
4.15888 kcal/mol |
40 59@LB@ | |@LB@5'-UGC...UUACU A AAGAA...CGG-3'@LB@ GGG AGGUAAG C UGGAGC@LB@ :|| |:||||| | ||||||@LB@ UCC UUCAUUC G ACCUCG@LB@3'-UUU...UUUUU U UUAU CGUUG...ACG-5'@LB@ | |@LB@ 57 34@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -17.7247 kcal/mol@LB@Unfolding Energy - mRNA 5.71782 kcal/mol@LB@Unfolding Energy - sRNA 4.15888 kcal/mol@LB@@LB@Position - mRNA 41 -- 58@LB@Position - sRNA 35 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 47 -- 53@LB@ |
99 |
0.003254 |
0.1114 |
b2839 |
lysR |
-9.43 |
0.148712 |
276 -- 282 |
1 -- 7 |
transcriptional activator of lysA; autorepressor |
|
_____________275_____283\n_____________|_______|\n5'-GGC...CGGCA_______UACAC...CAA-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
276 -- 282 |
1 -- 7 |
-13.2779 kcal/mol |
1.51062 kcal/mol |
2.34039 kcal/mol |
275 283@LB@ | |@LB@5'-GGC...CGGCA UACAC...CAA-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2779 kcal/mol@LB@Unfolding Energy - mRNA 1.51062 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |
130 |
0.00465 |
0.126 |
b2916 |
argP |
-9.43 |
0.148863 |
238 -- 266 |
47 -- 73 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________237___________________________267\n_____________|_____________________________|\n5'-GGC...ACUGG__________ACG____C_____UU____CGCGC...CAG-3'\n______________AUGCGGUGAU___UGAA_GAGGA__UGAG\n______________||||:||:||___::||_:||||__|:||\n______________UACGUCAUUA___GUUU_UUCCU__AUUC\n3'-UUU...CACGA__________A______U_____UC____UGUUA...ACG-5'\n_____________|_____________________________|\n_____________74____________________________46\n |
240 -- 246 |
65 -- 71 |
-19.9139 kcal/mol |
5.97985 kcal/mol |
4.50495 kcal/mol |
237 267@LB@ | |@LB@5'-GGC...ACUGG ACG C UU CGCGC...CAG-3'@LB@ AUGCGGUGAU UGAA GAGGA UGAG@LB@ ||||:||:|| ::|| :|||| |:||@LB@ UACGUCAUUA GUUU UUCCU AUUC@LB@3'-UUU...CACGA A U UC UGUUA...ACG-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -19.9139 kcal/mol@LB@Unfolding Energy - mRNA 5.97985 kcal/mol@LB@Unfolding Energy - sRNA 4.50495 kcal/mol@LB@@LB@Position - mRNA 238 -- 266@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 65 -- 71@LB@ |
4 |
1.28e-06 |
0.001128 |
b0884 |
infA |
-17.67 |
0.000535 |
178 -- 264 |
1 -- 71 |
translation initiation factor IF-1 |
|
_____________177_______________________________________________________________________________________265\n_____________|_________________________________________________________________________________________|\n5'-UUU...UUACG________ACCCC______UUAGAUGGCCAA_____________U__AA_____G__A___________AA______CUAA____A___UCCGC...CUG-3'\n______________GUAGUGAU_____AGAGGA____________AG_AAGACAAUAU_GA__UGCAA_GU_CCGUU_CUUGA__CGUUGC____UACC_UGU\n______________|:|||:||_____|:||||____________||_||||||||||_||__:||||_|:_||:|:_|||||__||||||____:|||_||:\n______________CGUCAUUA_____UUUCCU____________UC_UUCUGUUAUA_CU__GCGUU_CG_GGUAG_GAACU__GCAACG____GUGG_ACG\n3'-UUU...CGAUA________AGUUU____________________A__________C__C______G________C_____________UAA_________-5'\n_____________|________________________________________________________________________________________|\n_____________72_______________________________________________________________________________________1\n |
214 -- 220 |
40 -- 46 |
-55.7119 kcal/mol |
17.4656 kcal/mol |
20.5786 kcal/mol |
177 265@LB@ | |@LB@5'-UUU...UUACG ACCCC UUAGAUGGCCAA U AA G A AA CUAA A UCCGC...CUG-3'@LB@ GUAGUGAU AGAGGA AG AAGACAAUAU GA UGCAA GU CCGUU CUUGA CGUUGC UACC UGU@LB@ |:|||:|| |:|||| || |||||||||| || :|||| |: ||:|: ||||| |||||| :||| ||:@LB@ CGUCAUUA UUUCCU UC UUCUGUUAUA CU GCGUU CG GGUAG GAACU GCAACG GUGG ACG@LB@3'-UUU...CGAUA AGUUU A C C G C UAA -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -17.67 kcal/mol@LB@Hybridization Energy -55.7119 kcal/mol@LB@Unfolding Energy - mRNA 17.4656 kcal/mol@LB@Unfolding Energy - sRNA 20.5786 kcal/mol@LB@@LB@Position - mRNA 178 -- 264@LB@Position - sRNA 1 -- 71@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 40 -- 46@LB@ |
28 |
0.0001471 |
0.01851 |
b0997 |
torA |
-9.78 |
0.123932 |
184 -- 203 |
41 -- 60 |
trimethylamine N-oxide (TMAO) reductase I catalytic subunit |
b3551 b1872 |
_____________183__________________204\n_____________|____________________|\n5'-UAC...GCGAU__________A__A______AACAA...CGC-3'\n______________AAGAAGGAAG_AA_AUAAUG\n______________||:|||||||_||_|:|||:\n______________UUUUUCCUUC_UU_UGUUAU\n3'-UUU...UAAGU__________A__C______ACCUC...ACG-5'\n_____________|____________________|\n_____________61___________________40\n |
187 -- 193 |
51 -- 57 |
-13.1224 kcal/mol |
1.37417 kcal/mol |
1.96633 kcal/mol |
183 204@LB@ | |@LB@5'-UAC...GCGAU A A AACAA...CGC-3'@LB@ AAGAAGGAAG AA AUAAUG@LB@ ||:||||||| || |:|||:@LB@ UUUUUCCUUC UU UGUUAU@LB@3'-UUU...UAAGU A C ACCUC...ACG-5'@LB@ | |@LB@ 61 40@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -13.1224 kcal/mol@LB@Unfolding Energy - mRNA 1.37417 kcal/mol@LB@Unfolding Energy - sRNA 1.96633 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 41 -- 60@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
145 |
0.00562 |
0.1365 |
b2532 |
trmJ |
-9.44 |
0.148020 |
215 -- 233 |
68 -- 84 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________214_________________234\n_____________|___________________|\n5'-CGU...AAUAU__G__________G__G__ACGUC...UGU-3'\n______________UC_AAUUGUGCUG_UG_AG\n______________||_|||||||||:_||_||\n______________AG_UUAACACGAU_AC_UC\n3'-UUU...UGCUU________________G__AUUAA...ACG-5'\n_____________|___________________|\n_____________85__________________67\n |
221 -- 227 |
73 -- 79 |
-16.7979 kcal/mol |
3.71432 kcal/mol |
3.64047 kcal/mol |
214 234@LB@ | |@LB@5'-CGU...AAUAU G G G ACGUC...UGU-3'@LB@ UC AAUUGUGCUG UG AG@LB@ || |||||||||: || ||@LB@ AG UUAACACGAU AC UC@LB@3'-UUU...UGCUU G AUUAA...ACG-5'@LB@ | |@LB@ 85 67@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -16.7979 kcal/mol@LB@Unfolding Energy - mRNA 3.71432 kcal/mol@LB@Unfolding Energy - sRNA 3.64047 kcal/mol@LB@@LB@Position - mRNA 215 -- 233@LB@Position - sRNA 68 -- 84@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 73 -- 79@LB@ |
141 |
0.005411 |
0.1351 |
b3260 |
dusB |
-10.20 |
0.098848 |
236 -- 254 |
20 -- 38 |
tRNA-dihydrouridine synthase B |
|
_____________235_________________255\n_____________|___________________|\n5'-ACU...CGCCU__U____________G___GGCAU...GAG-3'\n______________GA_CGCAGCGCCCAU_GCU\n______________||_||||:|||||||_|||\n______________CU_GCGUUGCGGGUA_CGA\n3'-UUU...UAUAC__C____________G___ACUGC...ACG-5'\n_____________|___________________|\n_____________39__________________19\n |
244 -- 250 |
24 -- 30 |
-30.8965 kcal/mol |
8.5282 kcal/mol |
12.1733 kcal/mol |
235 255@LB@ | |@LB@5'-ACU...CGCCU U G GGCAU...GAG-3'@LB@ GA CGCAGCGCCCAU GCU@LB@ || ||||:||||||| |||@LB@ CU GCGUUGCGGGUA CGA@LB@3'-UUU...UAUAC C G ACUGC...ACG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -30.8965 kcal/mol@LB@Unfolding Energy - mRNA 8.5282 kcal/mol@LB@Unfolding Energy - sRNA 12.1733 kcal/mol@LB@@LB@Position - mRNA 236 -- 254@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 24 -- 30@LB@ |
108 |
0.003432 |
0.1114 |
b3159 |
yhbV |
-7.84 |
0.318675 |
148 -- 178 |
4 -- 39 |
U32 peptidase family protein |
|
_____________147___________________________________179\n_____________|_____________________________________|\n5'-GUG...CCGAA__CA_____A_______U_____________A_____GUAAA...AUC-3'\n______________GG__CGCAA___CCA_C_CUUGGCG___CAU_UCACC\n______________||__|||||___|||_|_||||:||___|||_|||||\n______________CC__GCGUU___GGU_G_GAACUGC___GUA_AGUGG\n3'-UUU...UUAUA__UC_____GCG___A_C_______AAC_________ACG-5'\n_____________|_____________________________________|\n_____________40____________________________________3\n |
163 -- 169 |
15 -- 21 |
-29.1995 kcal/mol |
6.07879 kcal/mol |
15.29 kcal/mol |
147 179@LB@ | |@LB@5'-GUG...CCGAA CA A U A GUAAA...AUC-3'@LB@ GG CGCAA CCA C CUUGGCG CAU UCACC@LB@ || ||||| ||| | ||||:|| ||| |||||@LB@ CC GCGUU GGU G GAACUGC GUA AGUGG@LB@3'-UUU...UUAUA UC GCG A C AAC ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -29.1995 kcal/mol@LB@Unfolding Energy - mRNA 6.07879 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 148 -- 178@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
77 |
0.00185 |
0.08273 |
b2325 |
yfcL |
-11.04 |
0.061434 |
190 -- 213 |
35 -- 57 |
uncharacterized protein |
|
_____________189______________________214\n_____________|________________________|\n5'-AAC...ACAAU______AG________CGC_____UUGAA...GCC-3'\n______________GAGGAA__AAGAUGAU___GGAGU\n______________:|||||__||||::||___||||:\n______________UUCCUU__UUCUGUUA___CCUCG\n3'-UUU...GUUUU______CA________UA______CGUUG...ACG-5'\n_____________|________________________|\n_____________58_______________________34\n |
199 -- 205 |
42 -- 48 |
-19.5886 kcal/mol |
4.3321 kcal/mol |
4.1846 kcal/mol |
189 214@LB@ | |@LB@5'-AAC...ACAAU AG CGC UUGAA...GCC-3'@LB@ GAGGAA AAGAUGAU GGAGU@LB@ :||||| ||||::|| ||||:@LB@ UUCCUU UUCUGUUA CCUCG@LB@3'-UUU...GUUUU CA UA CGUUG...ACG-5'@LB@ | |@LB@ 58 34@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -19.5886 kcal/mol@LB@Unfolding Energy - mRNA 4.3321 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 190 -- 213@LB@Position - sRNA 35 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |