| 95 |
0.002866 |
0.1063 |
b1338 |
abgA |
-10.09 |
0.104797 |
206 -- 225 |
73 -- 94 |
p-aminobenzoyl-glutamate hydrolase A subunit |
|
_____________205____________________226\n_____________|______________________|\n5'-GAU...AUGGA___UU_________________AUUCG...UCC-3'\n______________GUC___UGAAUCAAUU_UGUUA\n______________|||___:|||||||||_||:||\n______________CAG___GCUUAGUUAA_ACGAU\n3'-UUU...AGCCG___CAU__________C_____ACGUC...ACG-5'\n_____________|______________________|\n_____________95_____________________72\n |
214 -- 220 |
79 -- 85 |
-14.4971 kcal/mol |
2.01447 kcal/mol |
2.39569 kcal/mol |
205 226@LB@ | |@LB@5'-GAU...AUGGA UU AUUCG...UCC-3'@LB@ GUC UGAAUCAAUU UGUUA@LB@ ||| :||||||||| ||:||@LB@ CAG GCUUAGUUAA ACGAU@LB@3'-UUU...AGCCG CAU C ACGUC...ACG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -14.4971 kcal/mol@LB@Unfolding Energy - mRNA 2.01447 kcal/mol@LB@Unfolding Energy - sRNA 2.39569 kcal/mol@LB@@LB@Position - mRNA 206 -- 225@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 21 |
6.29e-05 |
0.01049 |
b4040 |
ubiA |
-12.44 |
0.026053 |
187 -- 207 |
35 -- 59 |
p-hydroxybenzoate octaprenyltransferase |
|
_____________186_______________________208\n_____________|_________________________|\n5'-AGC...GUACU________AAA______________GGAGU...UAU-3'\n______________AAGAGGAA_______AAUAUGGAGU\n______________||:|||||_______|||||||||:\n______________UUUUCCUU_______UUAUACCUCG\n3'-UUU...AAGUU________CAUUCUG__________CGUUG...ACG-5'\n_____________|_________________________|\n_____________60________________________34\n |
201 -- 207 |
35 -- 41 |
-18.3412 kcal/mol |
1.63668 kcal/mol |
4.22714 kcal/mol |
186 208@LB@ | |@LB@5'-AGC...GUACU AAA GGAGU...UAU-3'@LB@ AAGAGGAA AAUAUGGAGU@LB@ ||:||||| |||||||||:@LB@ UUUUCCUU UUAUACCUCG@LB@3'-UUU...AAGUU CAUUCUG CGUUG...ACG-5'@LB@ | |@LB@ 60 34@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -18.3412 kcal/mol@LB@Unfolding Energy - mRNA 1.63668 kcal/mol@LB@Unfolding Energy - sRNA 4.22714 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 35 -- 59@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 125 |
0.004538 |
0.1258 |
b0951 |
pqiB |
-12.90 |
0.019327 |
185 -- 205 |
37 -- 57 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________184___________________206\n_____________|_____________________|\n5'-CUG...AGCAU______UCCU___________AUCUA...UUC-3'\n______________GAGGAG____GACAGUAUGGA\n______________:||||:____||||:||||||\n______________UUCCUU____CUGUUAUACCU\n3'-UUU...GUUUU______CAUU___________CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
199 -- 205 |
37 -- 43 |
-21.8788 kcal/mol |
5.24969 kcal/mol |
3.68958 kcal/mol |
184 206@LB@ | |@LB@5'-CUG...AGCAU UCCU AUCUA...UUC-3'@LB@ GAGGAG GACAGUAUGGA@LB@ :||||: ||||:||||||@LB@ UUCCUU CUGUUAUACCU@LB@3'-UUU...GUUUU CAUU CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -21.8788 kcal/mol@LB@Unfolding Energy - mRNA 5.24969 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 32 |
0.0001844 |
0.0203 |
b0006 |
yaaA |
-10.88 |
0.067423 |
215 -- 223 |
1 -- 9 |
peroxide resistance protein lowers intracellular iron |
|
_____________214_______224\n_____________|_________|\n5'-UUC...CUUAU_________GAAAA...AGU-3'\n______________UUCACCUGC\n______________|||||||||\n______________AAGUGGACG\n3'-UUU...AACGU_________-5'\n_____________|________|\n_____________10_______1\n |
217 -- 223 |
1 -- 7 |
-15.2887 kcal/mol |
2.04449 kcal/mol |
2.37317 kcal/mol |
214 224@LB@ | |@LB@5'-UUC...CUUAU GAAAA...AGU-3'@LB@ UUCACCUGC@LB@ |||||||||@LB@ AAGUGGACG@LB@3'-UUU...AACGU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -15.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.04449 kcal/mol@LB@Unfolding Energy - sRNA 2.37317 kcal/mol@LB@@LB@Position - mRNA 215 -- 223@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 143 |
0.005544 |
0.1363 |
b2936 |
loiP |
-13.30 |
0.014839 |
83 -- 152 |
1 -- 41 |
Phe-Phe periplasmic metalloprotease OM lipoprotein; low salt-inducible; Era-binding heat shock protein |
|
_____________82______________________________________________________________________153\n_____________|_______________________________________________________________________|\n5'-UUG...CUCGC___UU______UCUACU_______C____GCGCUUUUCCUUAUAC__AGACUGA____C____________AAACG...AAG-3'\n______________AUG__GCGCAA______CGCCCGU_CGCU________________UG_______GCGU_G_AUUCACCUGC\n______________|||__||||||______|||||:|_||||________________||_______:|||_|_||||||||||\n______________UAC__CGCGUU______GCGGGUA_GCGA________________AC_______UGCA_C_UAAGUGGACG\n3'-UUU...UGUUA___CU_____________________________________________________A_G__________-5'\n_____________|______________________________________________________________________|\n_____________42_____________________________________________________________________1\n |
146 -- 152 |
1 -- 7 |
-44.3719 kcal/mol |
15.78 kcal/mol |
15.2922 kcal/mol |
82 153@LB@ | |@LB@5'-UUG...CUCGC UU UCUACU C GCGCUUUUCCUUAUAC AGACUGA C AAACG...AAG-3'@LB@ AUG GCGCAA CGCCCGU CGCU UG GCGU G AUUCACCUGC@LB@ ||| |||||| |||||:| |||| || :||| | ||||||||||@LB@ UAC CGCGUU GCGGGUA GCGA AC UGCA C UAAGUGGACG@LB@3'-UUU...UGUUA CU A G -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -44.3719 kcal/mol@LB@Unfolding Energy - mRNA 15.78 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 83 -- 152@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 6 |
5.595e-06 |
0.003285 |
b2048 |
cpsG |
-15.91 |
0.002276 |
49 -- 82 |
20 -- 54 |
phosphomannomutase |
|
_____________48__________________________________83\n_____________|___________________________________|\n5'-GGG...AUCUC_________________U____UU___GG______ACGGA...GCG-3'\n______________GAAG_AGGAUGAUGUGG_GCGU__CGC__AUCGCU\n______________||||_|:||::||:|||_|||:__|||__||||||\n______________CUUC_UUCUGUUAUACC_CGCG__GCG__UAGCGA\n3'-UUU...UUUUC____A____________U____UU___GG______ACUGC...ACG-5'\n_____________|___________________________________|\n_____________55__________________________________19\n |
54 -- 60 |
42 -- 48 |
-40.4755 kcal/mol |
10.8622 kcal/mol |
13.7092 kcal/mol |
48 83@LB@ | |@LB@5'-GGG...AUCUC U UU GG ACGGA...GCG-3'@LB@ GAAG AGGAUGAUGUGG GCGU CGC AUCGCU@LB@ |||| |:||::||:||| |||: ||| ||||||@LB@ CUUC UUCUGUUAUACC CGCG GCG UAGCGA@LB@3'-UUU...UUUUC A U UU GG ACUGC...ACG-5'@LB@ | |@LB@ 55 19@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -40.4755 kcal/mol@LB@Unfolding Energy - mRNA 10.8622 kcal/mol@LB@Unfolding Energy - sRNA 13.7092 kcal/mol@LB@@LB@Position - mRNA 49 -- 82@LB@Position - sRNA 20 -- 54@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 147 |
0.005701 |
0.1366 |
b1622 |
malY |
-7.52 |
0.364460 |
44 -- 91 |
35 -- 85 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________43____________________________________________________92\n_____________|_____________________________________________________|\n5'-UCG...GAUAU____C____UAA_______GCACU__________CAAUC___________C__AGUAC...UCA-3'\n______________GUCG_UUGU___UGUGCAG_________GAAGGA_____GGGCAAU_UGG_GU\n______________:||:_||||___|:|||||_________:|||||_____:|:||||_|||_|:\n______________UAGU_AACA___AUACGUC_________UUUCCU_____UCUGUUA_ACC_CG\n3'-UUU...AUGCU____U____CG________AUUAAGUUU______UCAU________U___U__CGUUG...ACG-5'\n_____________|_____________________________________________________|\n_____________86____________________________________________________34\n |
79 -- 85 |
42 -- 48 |
-29.3049 kcal/mol |
13.5755 kcal/mol |
8.20283 kcal/mol |
43 92@LB@ | |@LB@5'-UCG...GAUAU C UAA GCACU CAAUC C AGUAC...UCA-3'@LB@ GUCG UUGU UGUGCAG GAAGGA GGGCAAU UGG GU@LB@ :||: |||| |:||||| :||||| :|:|||| ||| |:@LB@ UAGU AACA AUACGUC UUUCCU UCUGUUA ACC CG@LB@3'-UUU...AUGCU U CG AUUAAGUUU UCAU U U CGUUG...ACG-5'@LB@ | |@LB@ 86 34@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -29.3049 kcal/mol@LB@Unfolding Energy - mRNA 13.5755 kcal/mol@LB@Unfolding Energy - sRNA 8.20283 kcal/mol@LB@@LB@Position - mRNA 44 -- 91@LB@Position - sRNA 35 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 169 |
0.006778 |
0.1407 |
b3300 |
secY |
-11.17 |
0.056917 |
151 -- 190 |
56 -- 93 |
preprotein translocase membrane subunit |
|
_____________150_______________________________________191\n_____________|_________________________________________|\n5'-CCU...GGCGC______UGCU_____AGC_____________AA________UAAGU...UCC-3'\n______________UCGUGC____AUCGA___UGCUG_GCGGUAA__UCGAGGAA\n______________||||:|____|||:|___||||:_||:||||__||:|::||\n______________AGCAUG____UAGUU___ACGAU_CGUCAUU__AGUUUUUU\n3'-UUU...GCCGC______CU_______AAC_____A_______A_________CCUUC...ACG-5'\n_____________|_________________________________________|\n_____________94________________________________________55\n |
174 -- 180 |
65 -- 71 |
-28.5007 kcal/mol |
12.5083 kcal/mol |
4.83069 kcal/mol |
150 191@LB@ | |@LB@5'-CCU...GGCGC UGCU AGC AA UAAGU...UCC-3'@LB@ UCGUGC AUCGA UGCUG GCGGUAA UCGAGGAA@LB@ ||||:| |||:| ||||: ||:|||| ||:|::||@LB@ AGCAUG UAGUU ACGAU CGUCAUU AGUUUUUU@LB@3'-UUU...GCCGC CU AAC A A CCUUC...ACG-5'@LB@ | |@LB@ 94 55@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -28.5007 kcal/mol@LB@Unfolding Energy - mRNA 12.5083 kcal/mol@LB@Unfolding Energy - sRNA 4.83069 kcal/mol@LB@@LB@Position - mRNA 151 -- 190@LB@Position - sRNA 56 -- 93@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 12 |
2.043e-05 |
0.005627 |
b3935 |
priA |
-14.36 |
0.007166 |
198 -- 229 |
1 -- 34 |
Primosome factor n' (replication factor Y) |
|
_____________197________________________________230\n_____________|__________________________________|\n5'-GAA...AUGAU__U___________CC________C______C__UCCGC...GCG-3'\n______________GC_AUGCCCGUUGC___ACGUUGC__UUGCC_GU\n______________||_|:||||:|:||___|||||||__|::||_|:\n______________CG_UGCGGGUAGCG___UGCAACG__AGUGG_CG\n3'-UUU...CCUCG__U___________AAC_______UA_____A__-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
214 -- 220 |
11 -- 17 |
-36.548 kcal/mol |
6.92453 kcal/mol |
15.2664 kcal/mol |
197 230@LB@ | |@LB@5'-GAA...AUGAU U CC C C UCCGC...GCG-3'@LB@ GC AUGCCCGUUGC ACGUUGC UUGCC GU@LB@ || |:||||:|:|| ||||||| |::|| |:@LB@ CG UGCGGGUAGCG UGCAACG AGUGG CG@LB@3'-UUU...CCUCG U AAC UA A -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.548 kcal/mol@LB@Unfolding Energy - mRNA 6.92453 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 198 -- 229@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 42 |
0.0003514 |
0.02948 |
b3847 |
pepQ |
-12.53 |
0.024661 |
145 -- 205 |
37 -- 89 |
proline dipeptidase |
|
_____________144______________________________________________________________206\n_____________|________________________________________________________________|\n5'-UUG...UCUGG_________________AGA_____AGACU___GG________ACA____GGUAA___A_____AUCAC...UUC-3'\n______________AUGAA_CGA_UGUGCUA___UGCGG_____UAA__UCAAAAAA___GAAG______AA_AUGGA\n______________|:|||_|:|_|||||||___|||:|_____|||__||||||||___||||______||_|||||\n______________UGCUU_GUU_ACACGAU___ACGUC_____AUU__AGUUUUUU___CUUC______UU_UACCU\n3'-UUU...CAGCA_____A___A_______________________A_________C______AUUCUG__A_____CGCGU...ACG-5'\n_____________|________________________________________________________________|\n_____________90_______________________________________________________________36\n |
153 -- 159 |
73 -- 79 |
-31.666 kcal/mol |
11.3417 kcal/mol |
7.78939 kcal/mol |
144 206@LB@ | |@LB@5'-UUG...UCUGG AGA AGACU GG ACA GGUAA A AUCAC...UUC-3'@LB@ AUGAA CGA UGUGCUA UGCGG UAA UCAAAAAA GAAG AA AUGGA@LB@ |:||| |:| ||||||| |||:| ||| |||||||| |||| || |||||@LB@ UGCUU GUU ACACGAU ACGUC AUU AGUUUUUU CUUC UU UACCU@LB@3'-UUU...CAGCA A A A C AUUCUG A CGCGU...ACG-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -31.666 kcal/mol@LB@Unfolding Energy - mRNA 11.3417 kcal/mol@LB@Unfolding Energy - sRNA 7.78939 kcal/mol@LB@@LB@Position - mRNA 145 -- 205@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 73 -- 79@LB@ |
