138 |
0.00525 |
0.1336 |
b0031 |
dapB |
-12.01 |
0.034078 |
16 -- 66 |
61 -- 114 |
dihydrodipicolinate reductase |
|
_____________15____________________________________________________________67\n_____________|_____________________________________________________________|\n5'-GUG...GAGGU__________________________ACCU____CAUGUU_______________C_____UCGAC...UGG-3'\n______________GCUGGCUC________UGGCGUCGUA____GUCA______AUUG_GC_AUGCAGU_AUUCA\n______________||:|:|||________:|||||||||____:|||______||||_||_|||||||_|||||\n______________CGGCUGAG________GCCGCAGCAU____UAGU______UAAC_CG_UACGUCA_UAAGU\n___3'-UUUUUUUU________UAGUUUCA__________GCU_______________A__A_______U_____UUUUU...ACG-5'\n_____________|_____________________________________________________________|\n_____________115___________________________________________________________60\n |
54 -- 60 |
67 -- 73 |
-49.0979 kcal/mol |
18.4253 kcal/mol |
18.6631 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...GAGGU ACCU CAUGUU C UCGAC...UGG-3'@LB@ GCUGGCUC UGGCGUCGUA GUCA AUUG GC AUGCAGU AUUCA@LB@ ||:|:||| :||||||||| :||| |||| || ||||||| |||||@LB@ CGGCUGAG GCCGCAGCAU UAGU UAAC CG UACGUCA UAAGU@LB@ 3'-UUUUUUUU UAGUUUCA GCU A A U UUUUU...ACG-5'@LB@ | |@LB@ 115 60@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -49.0979 kcal/mol@LB@Unfolding Energy - mRNA 18.4253 kcal/mol@LB@Unfolding Energy - sRNA 18.6631 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 61 -- 114@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 67 -- 73@LB@ |
126 |
0.004539 |
0.1258 |
b0546 |
ybcM |
-11.00 |
0.062763 |
188 -- 220 |
45 -- 91 |
DLP12 prophage; putative DNA-binding transcriptional regulator |
b1499 b0564 b3515 b4116 b0566 b3516 |
_____________187_____________________________________________221\n_____________|_______________________________________________|\n5'-GCU...AUAAA___G__UGA__GUA_________A_______________________UAACU...GUC-3'\n______________GUA_GG___GA___UGCUG_GCA______________GAGGUAAGAC\n______________|||_|:___:|___||||:_|||______________||:|||||||\n______________CAU_CU___UU___ACGAU_CGU______________CUUCAUUCUG\n3'-UUU...CGCAG___G__UAG__AAC_____A___CAUUAAGUUUUUUC__________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
214 -- 220 |
45 -- 51 |
-23.4531 kcal/mol |
6.72952 kcal/mol |
5.72765 kcal/mol |
187 221@LB@ | |@LB@5'-GCU...AUAAA G UGA GUA A UAACU...GUC-3'@LB@ GUA GG GA UGCUG GCA GAGGUAAGAC@LB@ ||| |: :| ||||: ||| ||:|||||||@LB@ CAU CU UU ACGAU CGU CUUCAUUCUG@LB@3'-UUU...CGCAG G UAG AAC A CAUUAAGUUUUUUC UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -23.4531 kcal/mol@LB@Unfolding Energy - mRNA 6.72952 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 188 -- 220@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 45 -- 51@LB@ |
106 |
0.003401 |
0.1114 |
b1848 |
yebG |
-10.18 |
0.099613 |
222 -- 299 |
16 -- 71 |
DNA damage-inducible protein regulated by LexA |
|
_____________221_______________________________________________________________________________300\n_____________|_________________________________________________________________________________|\n5'-GUU...AAUAC_____C_____U_____C_________A_____CGUUUACCAGCAAAAA__A______________GACAAAA________A-3'\n______________GUAGU_AUUCG_GAGGG_GAAG__AGA_AAUGU________________GG_AGC_CGAUGCUUAU_______UGCUUGAU\n______________|:|||_||||:_:|::|_||||__|||_|||:|________________||_|||_|:|:||::||_______:||||||:\n______________CGUCA_UAAGU_UUUUC_CUUC__UCU_UUAUA________________CC_UCG_GUUGCGGGUA_______GCGAACUG\n3'-UUU...CGAUA_____U_____U__________AU___G___________________________C_________________________CAACG...ACG-5'\n_____________|_________________________________________________________________________________|\n_____________72________________________________________________________________________________15\n |
293 -- 299 |
16 -- 22 |
-43.4853 kcal/mol |
15.7801 kcal/mol |
17.5254 kcal/mol |
221 300@LB@ | |@LB@5'-GUU...AAUAC C U C A CGUUUACCAGCAAAAA A GACAAAA A-3'@LB@ GUAGU AUUCG GAGGG GAAG AGA AAUGU GG AGC CGAUGCUUAU UGCUUGAU@LB@ |:||| ||||: :|::| |||| ||| |||:| || ||| |:|:||::|| :||||||:@LB@ CGUCA UAAGU UUUUC CUUC UCU UUAUA CC UCG GUUGCGGGUA GCGAACUG@LB@3'-UUU...CGAUA U U AU G C CAACG...ACG-5'@LB@ | |@LB@ 72 15@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -43.4853 kcal/mol@LB@Unfolding Energy - mRNA 15.7801 kcal/mol@LB@Unfolding Energy - sRNA 17.5254 kcal/mol@LB@@LB@Position - mRNA 222 -- 299@LB@Position - sRNA 16 -- 71@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 16 -- 22@LB@ |
3 |
7.57e-07 |
0.0008889 |
b1763 |
topB |
-11.97 |
0.035059 |
233 -- 258 |
1 -- 37 |
DNA topoisomerase III |
|
_____________232___________________________________259\n_____________|_____________________________________|\n5'-UCU...AGUCU_____________________________________CCAAA...GUA-3'\n______________GGCGC_GCG_CCAUUGCU_GAUGU________CCUGC\n______________:||||_:||_||||:|||_||:||________|||||\n______________UCGCG_UGC_GGUAGCGA_CUGCA________GGACG\n3'-UUU...AUACC_____U___G________A_____ACGUAAGU_____-5'\n_____________|____________________________________|\n_____________38___________________________________1\n |
242 -- 248 |
20 -- 26 |
-35.9728 kcal/mol |
8.72127 kcal/mol |
15.288 kcal/mol |
232 259@LB@ | |@LB@5'-UCU...AGUCU CCAAA...GUA-3'@LB@ GGCGC GCG CCAUUGCU GAUGU CCUGC@LB@ :|||| :|| ||||:||| ||:|| |||||@LB@ UCGCG UGC GGUAGCGA CUGCA GGACG@LB@3'-UUU...AUACC U G A ACGUAAGU -5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -35.9728 kcal/mol@LB@Unfolding Energy - mRNA 8.72127 kcal/mol@LB@Unfolding Energy - sRNA 15.288 kcal/mol@LB@@LB@Position - mRNA 233 -- 258@LB@Position - sRNA 1 -- 37@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 20 -- 26@LB@ |
151 |
0.005924 |
0.1368 |
b3248 |
yhdE |
-13.35 |
0.014399 |
2 -- 41 |
1 -- 42 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________1___________________________________________42\n_____________|___________________________________________|\n__________5'-U_____C___A_______G_____C_________U______G__GGUGG...AGC-3'\n______________UAUGG_AGC__GGCGCU_GUCGU___AUGUUGC_UUCGCU_GU\n______________|||||_|||__::|||:_:|||:___|:|||||_|||:|:_|:\n______________AUACC_UCG__UUGCGG_UAGCG___UGCAACG_AAGUGG_CG\n3'-UUU...CUGUU_________CG______G_____AAC_______U______A__-5'\n_____________|__________________________________________|\n_____________43_________________________________________1\n |
25 -- 31 |
11 -- 17 |
-43.9582 kcal/mol |
15.3205 kcal/mol |
15.293 kcal/mol |
1 42@LB@ | |@LB@ 5'-U C A G C U G GGUGG...AGC-3'@LB@ UAUGG AGC GGCGCU GUCGU AUGUUGC UUCGCU GU@LB@ ||||| ||| ::|||: :|||: |:||||| |||:|: |:@LB@ AUACC UCG UUGCGG UAGCG UGCAACG AAGUGG CG@LB@3'-UUU...CUGUU CG G AAC U A -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -43.9582 kcal/mol@LB@Unfolding Energy - mRNA 15.3205 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 2 -- 41@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 11 -- 17@LB@ |
102 |
0.003332 |
0.1114 |
b1279 |
yciS |
-9.50 |
0.143375 |
3 -- 9 |
1 -- 7 |
DUF1049 family inner membrane protein function unknown |
|
_____________2_______10\n_____________|_______|\n_________5'-AC_______GGAAG...UGU-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
3 -- 9 |
1 -- 7 |
-13.2462 kcal/mol |
1.40693 kcal/mol |
2.34039 kcal/mol |
2 10@LB@ | |@LB@ 5'-AC GGAAG...UGU-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -13.2462 kcal/mol@LB@Unfolding Energy - mRNA 1.40693 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 3 -- 9@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 1 -- 7@LB@ |
128 |
0.004569 |
0.1258 |
b3033 |
yqiB |
-9.35 |
0.155553 |
90 -- 130 |
43 -- 87 |
DUF1249 protein YqiB |
|
_____________89_____________________________________________131\n_____________|______________________________________________|\n5'-UGG...GCCGG_____________AUAC______GUA__________AAAUC_____CGCAG...GCG-3'\n______________GAA_CAG____GC____CAGUGG___GAAGAGGGGA_____GACAA\n______________|||_||:____||____||||::___:||:|:||:|_____|||||\n______________CUU_GUU____CG____GUCAUU___UUUUUUCCUU_____CUGUU\n3'-UUU...GCAUG___A___AACA__AUAC______AAG__________CAUU______AUACC...ACG-5'\n_____________|______________________________________________|\n_____________88_____________________________________________42\n |
114 -- 120 |
52 -- 58 |
-22.1335 kcal/mol |
7.07839 kcal/mol |
5.71172 kcal/mol |
89 131@LB@ | |@LB@5'-UGG...GCCGG AUAC GUA AAAUC CGCAG...GCG-3'@LB@ GAA CAG GC CAGUGG GAAGAGGGGA GACAA@LB@ ||| ||: || ||||:: :||:|:||:| |||||@LB@ CUU GUU CG GUCAUU UUUUUUCCUU CUGUU@LB@3'-UUU...GCAUG A AACA AUAC AAG CAUU AUACC...ACG-5'@LB@ | |@LB@ 88 42@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -22.1335 kcal/mol@LB@Unfolding Energy - mRNA 7.07839 kcal/mol@LB@Unfolding Energy - sRNA 5.71172 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 43 -- 87@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
26 |
0.000123 |
0.01616 |
b3280 |
yrdB |
-11.55 |
0.045184 |
198 -- 244 |
43 -- 92 |
DUF1488 family protein |
|
_____________197__________________________________________________245\n_____________|____________________________________________________|\n5'-CCA...UUGUC__CG______________C__C____UUC_____C_____AG__________GAAUA...GCG-3'\n______________CG__UGAAUCAG____GC_AU_CAGU____CGGA_AGGGA__AGUGGGACGA\n______________||__:||||||:____||_||_||||____|::|_|:|||__|||::|||:|\n______________GC__GCUUAGUU____CG_UA_GUCA____GUUU_UUCCU__UCAUUCUGUU\n3'-UUU...CCGCA__AU________AACA__A__C____UUAA____U_________________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
238 -- 244 |
43 -- 49 |
-31.3697 kcal/mol |
13.9577 kcal/mol |
5.86211 kcal/mol |
197 245@LB@ | |@LB@5'-CCA...UUGUC CG C C UUC C AG GAAUA...GCG-3'@LB@ CG UGAAUCAG GC AU CAGU CGGA AGGGA AGUGGGACGA@LB@ || :||||||: || || |||| |::| |:||| |||::|||:|@LB@ GC GCUUAGUU CG UA GUCA GUUU UUCCU UCAUUCUGUU@LB@3'-UUU...CCGCA AU AACA A C UUAA U AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -31.3697 kcal/mol@LB@Unfolding Energy - mRNA 13.9577 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 198 -- 244@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 43 -- 49@LB@ |
131 |
0.004841 |
0.1302 |
b3242 |
aaeX |
-9.57 |
0.138370 |
170 -- 176 |
1 -- 7 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________169_____177\n_____________|_______|\n5'-GCG...AAUAA_______UCUCU...GGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
170 -- 176 |
1 -- 7 |
-12.9142 kcal/mol |
1.00865 kcal/mol |
2.34039 kcal/mol |
169 177@LB@ | |@LB@5'-GCG...AAUAA UCUCU...GGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -12.9142 kcal/mol@LB@Unfolding Energy - mRNA 1.00865 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 170 -- 176@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 1 -- 7@LB@ |
89 |
0.002455 |
0.09689 |
b0466 |
ybaM |
-10.99 |
0.063193 |
248 -- 263 |
68 -- 82 |
DUF2496 family protein |
|
_____________247______________264\n_____________|________________|\n5'-GCA...GAUUU__________C__G__GAAAA...CGC-3'\n______________GAUUGUGCUG_UG_AG\n______________:||||||||:_||_||\n______________UUAACACGAU_AC_UC\n3'-UUU...CUUAG_____________G__AUUAA...ACG-5'\n_____________|________________|\n_____________83_______________67\n |
251 -- 257 |
73 -- 79 |
-16.1643 kcal/mol |
2.45269 kcal/mol |
2.72435 kcal/mol |
247 264@LB@ | |@LB@5'-GCA...GAUUU C G GAAAA...CGC-3'@LB@ GAUUGUGCUG UG AG@LB@ :||||||||: || ||@LB@ UUAACACGAU AC UC@LB@3'-UUU...CUUAG G AUUAA...ACG-5'@LB@ | |@LB@ 83 67@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -16.1643 kcal/mol@LB@Unfolding Energy - mRNA 2.45269 kcal/mol@LB@Unfolding Energy - sRNA 2.72435 kcal/mol@LB@@LB@Position - mRNA 248 -- 263@LB@Position - sRNA 68 -- 82@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 73 -- 79@LB@ |