| 89 |
0.002865 |
0.1082 |
b2378 |
lpxP |
-9.84 |
0.178666 |
41 -- 76 |
9 -- 35 |
palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________40____________________________________77\n_____________|_____________________________________|\n5'-AUU...AUAAA______AUACC_____C____CUCCUCGU________CCUGA...CUU-3'\n______________GUACAG_____GCAUU__AUG________GGUUAUGU\n______________||||||_____|||||__|||________||||||||\n______________CAUGUC_____CGUAA__UAC________CCAAUACA\n3'-UUU...AGGAC______GAU_______AA___________________AAAAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________8\n |
70 -- 76 |
9 -- 15 |
-19.6308 kcal/mol |
8.30521 kcal/mol |
1.48708 kcal/mol |
40 77@LB@ | |@LB@5'-AUU...AUAAA AUACC C CUCCUCGU CCUGA...CUU-3'@LB@ GUACAG GCAUU AUG GGUUAUGU@LB@ |||||| ||||| ||| ||||||||@LB@ CAUGUC CGUAA UAC CCAAUACA@LB@3'-UUU...AGGAC GAU AA AAAAGUCG-5'@LB@ | |@LB@ 36 8@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -19.6308 kcal/mol@LB@Unfolding Energy - mRNA 8.30521 kcal/mol@LB@Unfolding Energy - sRNA 1.48708 kcal/mol@LB@@LB@Position - mRNA 41 -- 76@LB@Position - sRNA 9 -- 35@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 51 |
0.001198 |
0.07744 |
b2174 |
lpxT |
-10.53 |
0.132559 |
260 -- 270 |
31 -- 41 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________259_________271\n_____________|___________|\n5'-GAA...UUUCU___________UCCCC...CGA-3'\n______________UUCCUGGUAUA\n______________|||||||||:|\n______________AAGGACCAUGU\n3'-UUU...CCACC___________CGAUC...UCG-5'\n_____________|___________|\n_____________42__________30\n |
264 -- 270 |
31 -- 37 |
-15.7095 kcal/mol |
1.92057 kcal/mol |
3.2552 kcal/mol |
259 271@LB@ | |@LB@5'-GAA...UUUCU UCCCC...CGA-3'@LB@ UUCCUGGUAUA@LB@ |||||||||:|@LB@ AAGGACCAUGU@LB@3'-UUU...CCACC CGAUC...UCG-5'@LB@ | |@LB@ 42 30@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -15.7095 kcal/mol@LB@Unfolding Energy - mRNA 1.92057 kcal/mol@LB@Unfolding Energy - sRNA 3.2552 kcal/mol@LB@@LB@Position - mRNA 260 -- 270@LB@Position - sRNA 31 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 196 |
0.01135 |
0.1946 |
b1515 |
lsrD |
-9.63 |
0.194390 |
56 -- 86 |
16 -- 44 |
autoinducer 2 import system permease protein |
|
_____________55______________________________87\n_____________|_______________________________|\n5'-AGC...GGGUC_______GC___CGGU__________G____ACGCC...AUA-3'\n______________UGGUUCU__UGG____GCUGGUGUUU_AUGG\n______________||||||:__|||____|||:|::|||_||||\n______________ACCAAGG__ACC____CGAUCGUAAA_UACC\n3'-UUU...CCUCC____________AUGU__________A____CAAUA...UCG-5'\n_____________|_______________________________|\n_____________45______________________________15\n |
56 -- 62 |
38 -- 44 |
-28.9595 kcal/mol |
14.7558 kcal/mol |
4.57147 kcal/mol |
55 87@LB@ | |@LB@5'-AGC...GGGUC GC CGGU G ACGCC...AUA-3'@LB@ UGGUUCU UGG GCUGGUGUUU AUGG@LB@ ||||||: ||| |||:|::||| ||||@LB@ ACCAAGG ACC CGAUCGUAAA UACC@LB@3'-UUU...CCUCC AUGU A CAAUA...UCG-5'@LB@ | |@LB@ 45 15@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -28.9595 kcal/mol@LB@Unfolding Energy - mRNA 14.7558 kcal/mol@LB@Unfolding Energy - sRNA 4.57147 kcal/mol@LB@@LB@Position - mRNA 56 -- 86@LB@Position - sRNA 16 -- 44@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 94 |
0.003268 |
0.1162 |
b2687 |
luxS |
-10.18 |
0.155002 |
189 -- 196 |
42 -- 49 |
S-ribosylhomocysteine lyase |
|
_____________188______197\n_____________|________|\n5'-GAA...UUACC________CUAAA...UCA-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
190 -- 196 |
42 -- 48 |
-16.7111 kcal/mol |
3.76521 kcal/mol |
2.77009 kcal/mol |
188 197@LB@ | |@LB@5'-GAA...UUACC CUAAA...UCA-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -16.7111 kcal/mol@LB@Unfolding Energy - mRNA 3.76521 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 130 |
0.005552 |
0.1429 |
b1622 |
malY |
-10.60 |
0.128513 |
216 -- 278 |
1 -- 51 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________215_____________________________________________________________279\n_____________|_______________________________________________________________|\n5'-UCG...UUUCA____UC____A__G_CAUG___CA______ACACA_____A______CGCUGACCG_______ACUGC...UCA-3'\n______________AAGG__GUGG_UC_U____GCA__UGGUGU_____GUGGG_UUAUGU_________UUUCGGC\n______________||||__||||_||_|____:||__|:|::|_____:||||_||||||_________||||:||\n______________UUCC__CACC_AG_A____UGU__AUCGUA_____UACCC_AAUACA_________AAAGUCG\n3'-UUU...UCCGA____UC____A__G_CCA____CG______AAA______________A_______________-5'\n_____________|______________________________________________________________|\n_____________52_____________________________________________________________1\n |
272 -- 278 |
1 -- 7 |
-34.7892 kcal/mol |
19.4932 kcal/mol |
4.69283 kcal/mol |
215 279@LB@ | |@LB@5'-UCG...UUUCA UC A G CAUG CA ACACA A CGCUGACCG ACUGC...UCA-3'@LB@ AAGG GUGG UC U GCA UGGUGU GUGGG UUAUGU UUUCGGC@LB@ |||| |||| || | :|| |:|::| :|||| |||||| ||||:||@LB@ UUCC CACC AG A UGU AUCGUA UACCC AAUACA AAAGUCG@LB@3'-UUU...UCCGA UC A G CCA CG AAA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -34.7892 kcal/mol@LB@Unfolding Energy - mRNA 19.4932 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 216 -- 278@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 184 |
0.01055 |
0.1919 |
b2175 |
mepS |
-11.10 |
0.102353 |
43 -- 84 |
9 -- 46 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________42____________________________________________85\n_____________|_____________________________________________|\n5'-CAA...GCCUC__C___AGAUUA____C_______A__UA________C_______CCACA...CAA-3'\n______________GG_GGU______UCCU___ACAGC_UA__AUUUUGUG_GUUA_GU\n______________||_|||______||||___|||||_||__|||||:||_||||_||\n______________CC_CCA______AGGA___UGUCG_AU__UAAAAUAC_CAAU_CA\n3'-UUU...UUCCU__A_____________CCA________CG________C____A__AAAAGUCG-5'\n_____________|_____________________________________________|\n_____________47____________________________________________8\n |
71 -- 77 |
17 -- 23 |
-25.0471 kcal/mol |
9.34223 kcal/mol |
4.60648 kcal/mol |
42 85@LB@ | |@LB@5'-CAA...GCCUC C AGAUUA C A UA C CCACA...CAA-3'@LB@ GG GGU UCCU ACAGC UA AUUUUGUG GUUA GU@LB@ || ||| |||| ||||| || |||||:|| |||| ||@LB@ CC CCA AGGA UGUCG AU UAAAAUAC CAAU CA@LB@3'-UUU...UUCCU A CCA CG C A AAAAGUCG-5'@LB@ | |@LB@ 47 8@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -25.0471 kcal/mol@LB@Unfolding Energy - mRNA 9.34223 kcal/mol@LB@Unfolding Energy - sRNA 4.60648 kcal/mol@LB@@LB@Position - mRNA 43 -- 84@LB@Position - sRNA 9 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 40 |
0.0008246 |
0.06626 |
b4019 |
metH |
-11.44 |
0.086775 |
244 -- 271 |
15 -- 42 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________243____________________________272\n_____________|______________________________|\n5'-UGA...UGAAC__A_________U__AC____G________CACCA...ACG-3'\n______________GU_UUCUGGUGC_GG__GGCG___UAUGGG\n______________||_|:|||||:|_:|__:||:___||||||\n______________CA_AGGACCAUG_UC__UCGU___AUACCC\n3'-UUU...UCCAC_______________GA____AAA______AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
249 -- 255 |
32 -- 38 |
-26.1297 kcal/mol |
10.116 kcal/mol |
4.57031 kcal/mol |
243 272@LB@ | |@LB@5'-UGA...UGAAC A U AC G CACCA...ACG-3'@LB@ GU UUCUGGUGC GG GGCG UAUGGG@LB@ || |:|||||:| :| :||: ||||||@LB@ CA AGGACCAUG UC UCGU AUACCC@LB@3'-UUU...UCCAC GA AAA AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.1297 kcal/mol@LB@Unfolding Energy - mRNA 10.116 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 244 -- 271@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 26 |
0.0003609 |
0.04652 |
b0197 |
metQ |
-15.58 |
0.007466 |
80 -- 120 |
1 -- 43 |
DL-methionine transporter subunit |
|
_____________79___________________________________________121\n_____________|____________________________________________|\n5'-GUG...AAUAC___A________U_____U____C_____U____UUAA______UCGCA...UUA-3'\n______________GGU__CUGGUAU_GCUGG_CAUU___UGG_UUAU____UUCAGU\n______________|||__||||||:_|||:|_||||___|||_||||____|||||:\n______________CCA__GACCAUG_CGAUC_GUAA___ACC_AAUA____AAGUCG\n3'-UUU...CUCCA___AG_______U__________AAU___C____CAAA______-5'\n_____________|___________________________________________|\n_____________44__________________________________________1\n |
84 -- 90 |
32 -- 38 |
-33.3889 kcal/mol |
13.205 kcal/mol |
4.6088 kcal/mol |
79 121@LB@ | |@LB@5'-GUG...AAUAC A U U C U UUAA UCGCA...UUA-3'@LB@ GGU CUGGUAU GCUGG CAUU UGG UUAU UUCAGU@LB@ ||| ||||||: |||:| |||| ||| |||| |||||:@LB@ CCA GACCAUG CGAUC GUAA ACC AAUA AAGUCG@LB@3'-UUU...CUCCA AG U AAU C CAAA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -33.3889 kcal/mol@LB@Unfolding Energy - mRNA 13.205 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 80 -- 120@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 30 |
0.0004774 |
0.05348 |
b2148 |
mglC |
-7.69 |
0.389595 |
275 -- 281 |
24 -- 30 |
methyl-galactoside transporter subunit |
|
_____________274_____282\n_____________|_______|\n5'-AUC...GUUUU_______AUUAU...ACC-3'\n______________GCUGGCG\n______________|||:||:\n______________CGAUCGU\n3'-UUU...CAUGU_______AAAAU...UCG-5'\n_____________|_______|\n_____________31______23\n |
275 -- 281 |
24 -- 30 |
-10.2126 kcal/mol |
1.14582 kcal/mol |
1.37559 kcal/mol |
274 282@LB@ | |@LB@5'-AUC...GUUUU AUUAU...ACC-3'@LB@ GCUGGCG@LB@ |||:||:@LB@ CGAUCGU@LB@3'-UUU...CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 31 23@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.2126 kcal/mol@LB@Unfolding Energy - mRNA 1.14582 kcal/mol@LB@Unfolding Energy - sRNA 1.37559 kcal/mol@LB@@LB@Position - mRNA 275 -- 281@LB@Position - sRNA 24 -- 30@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 24 -- 30@LB@ |
