| 52 |
0.001222 |
0.07744 |
b2217 |
rcsB |
-14.74 |
0.013297 |
68 -- 91 |
9 -- 38 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________67_______________________________92\n_____________|________________________________|\n5'-AAC...UAAAU_______CC___A___________________GAAAC...GCG-3'\n______________CUGGUAC__GGC_AGCA________GUUAUGU\n______________|||||||__:||_||||________|||||||\n______________GACCAUG__UCG_UCGU________CAAUACA\n3'-UUU...CCAAG____________A____AAAAUACC_______AAAAGUCG-5'\n_____________|________________________________|\n_____________39_______________________________8\n |
85 -- 91 |
9 -- 15 |
-24.0406 kcal/mol |
4.76673 kcal/mol |
4.53501 kcal/mol |
67 92@LB@ | |@LB@5'-AAC...UAAAU CC A GAAAC...GCG-3'@LB@ CUGGUAC GGC AGCA GUUAUGU@LB@ ||||||| :|| |||| |||||||@LB@ GACCAUG UCG UCGU CAAUACA@LB@3'-UUU...CCAAG A AAAAUACC AAAAGUCG-5'@LB@ | |@LB@ 39 8@LB@@LB@@LB@Energy -14.74 kcal/mol@LB@Hybridization Energy -24.0406 kcal/mol@LB@Unfolding Energy - mRNA 4.76673 kcal/mol@LB@Unfolding Energy - sRNA 4.53501 kcal/mol@LB@@LB@Position - mRNA 68 -- 91@LB@Position - sRNA 9 -- 38@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 126 |
0.00537 |
0.142 |
b3789 |
rffH |
-9.20 |
0.230539 |
124 -- 140 |
30 -- 46 |
glucose-1-phosphate thymidylyltransferase |
|
_____________123_______________141\n_____________|_________________|\n5'-GGC...AAGCU_____AAG_A_______GACGG...UGA-3'\n______________GGUGG___C_GGUGCAG\n______________|||||___|_|||:|||\n______________CCACC___G_CCAUGUC\n3'-UUU...UUCCU_____AAG_A_______GAUCG...UCG-5'\n_____________|_________________|\n_____________47________________29\n |
134 -- 140 |
30 -- 36 |
-19.3061 kcal/mol |
5.8192 kcal/mol |
4.28755 kcal/mol |
123 141@LB@ | |@LB@5'-GGC...AAGCU AAG A GACGG...UGA-3'@LB@ GGUGG C GGUGCAG@LB@ ||||| | |||:|||@LB@ CCACC G CCAUGUC@LB@3'-UUU...UUCCU AAG A GAUCG...UCG-5'@LB@ | |@LB@ 47 29@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -19.3061 kcal/mol@LB@Unfolding Energy - mRNA 5.8192 kcal/mol@LB@Unfolding Energy - sRNA 4.28755 kcal/mol@LB@@LB@Position - mRNA 124 -- 140@LB@Position - sRNA 30 -- 46@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 1 |
0 |
0 |
b3824 |
rhtB |
-9.47 |
0.207720 |
26 -- 71 |
1 -- 43 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________25_________________________________________________72\n_____________|__________________________________________________|\n5'-ACG...UCAGC___C__A____AAAA_____AAAC_______CUCU_________CC____CUUUU...ACC-3'\n______________GGU_CC_UGGU____GCAGC____GCGUUUU________UGUUU__CAGU\n______________|||_||_||||____:||||____||:||||________|||||__|||:\n______________CCA_GG_ACCA____UGUCG____CGUAAAA________ACAAA__GUCG\n3'-UUU...CUCCA___A________________AU_________UACCCAAU_____AA____-5'\n_____________|_________________________________________________|\n_____________44________________________________________________1\n |
50 -- 56 |
20 -- 26 |
-25.7164 kcal/mol |
11.6412 kcal/mol |
4.6088 kcal/mol |
25 72@LB@ | |@LB@5'-ACG...UCAGC C A AAAA AAAC CUCU CC CUUUU...ACC-3'@LB@ GGU CC UGGU GCAGC GCGUUUU UGUUU CAGU@LB@ ||| || |||| :|||| ||:|||| ||||| |||:@LB@ CCA GG ACCA UGUCG CGUAAAA ACAAA GUCG@LB@3'-UUU...CUCCA A AU UACCCAAU AA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -25.7164 kcal/mol@LB@Unfolding Energy - mRNA 11.6412 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 26 -- 71@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 200 |
0.01185 |
0.1975 |
b0025 |
ribF |
-6.09 |
0.598433 |
35 -- 41 |
28 -- 34 |
bifunctional riboflavin kinase/FAD synthetase |
|
_____________34______42\n_____________|_______|\n5'-UGG...GUGAA_______UUUCC...GCG-3'\n______________UACAGCU\n______________|||||||\n______________AUGUCGA\n3'-UUU...GGACC_______UCGUA...UCG-5'\n_____________|_______|\n_____________35______27\n |
35 -- 41 |
28 -- 34 |
-8.9914 kcal/mol |
1.72675 kcal/mol |
1.17027 kcal/mol |
34 42@LB@ | |@LB@5'-UGG...GUGAA UUUCC...GCG-3'@LB@ UACAGCU@LB@ |||||||@LB@ AUGUCGA@LB@3'-UUU...GGACC UCGUA...UCG-5'@LB@ | |@LB@ 35 27@LB@@LB@@LB@Energy -6.09 kcal/mol@LB@Hybridization Energy -8.9914 kcal/mol@LB@Unfolding Energy - mRNA 1.72675 kcal/mol@LB@Unfolding Energy - sRNA 1.17027 kcal/mol@LB@@LB@Position - mRNA 35 -- 41@LB@Position - sRNA 28 -- 34@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 57 |
0.001403 |
0.08147 |
b0948 |
rlmL |
-12.46 |
0.051711 |
286 -- 300 |
33 -- 47 |
23S rRNA m(2)G2445 and m(7)G2069 methyltransferases SAM-dependent |
|
_____________285____________300\n_____________|______________|\n5'-GAC...AUGCC_________AG____-3'\n______________AGGUGGUUC__GGUG\n______________|||||||||__|||:\n______________UCCACCAAG__CCAU\n3'-UUU...AUUCC_________GA____GUCGA...UCG-5'\n_____________|_______________|\n_____________48______________32\n |
288 -- 294 |
39 -- 45 |
-21.3846 kcal/mol |
5.67574 kcal/mol |
3.25146 kcal/mol |
285 300@LB@ | |@LB@5'-GAC...AUGCC AG -3'@LB@ AGGUGGUUC GGUG@LB@ ||||||||| |||:@LB@ UCCACCAAG CCAU@LB@3'-UUU...AUUCC GA GUCGA...UCG-5'@LB@ | |@LB@ 48 32@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -21.3846 kcal/mol@LB@Unfolding Energy - mRNA 5.67574 kcal/mol@LB@Unfolding Energy - sRNA 3.25146 kcal/mol@LB@@LB@Position - mRNA 286 -- 300@LB@Position - sRNA 33 -- 47@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 195 |
0.01134 |
0.1946 |
b0633 |
rlpA |
-8.12 |
0.339483 |
43 -- 55 |
25 -- 37 |
septal ring protein suppressor of prc minor lipoprotein |
|
_____________42____________56\n_____________|_____________|\n5'-CGG...AAUAU_________A___GGUAU...CUG-3'\n______________UGGUAUGGU_AGC\n______________|||||::|:_|||\n______________ACCAUGUCG_UCG\n3'-UUU...CAAGG_________A___UAAAA...UCG-5'\n_____________|_____________|\n_____________38____________24\n |
45 -- 51 |
29 -- 35 |
-15.087 kcal/mol |
4.33932 kcal/mol |
2.62824 kcal/mol |
42 56@LB@ | |@LB@5'-CGG...AAUAU A GGUAU...CUG-3'@LB@ UGGUAUGGU AGC@LB@ |||||::|: |||@LB@ ACCAUGUCG UCG@LB@3'-UUU...CAAGG A UAAAA...UCG-5'@LB@ | |@LB@ 38 24@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -15.087 kcal/mol@LB@Unfolding Energy - mRNA 4.33932 kcal/mol@LB@Unfolding Energy - sRNA 2.62824 kcal/mol@LB@@LB@Position - mRNA 43 -- 55@LB@Position - sRNA 25 -- 37@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 171 |
0.00925 |
0.1803 |
b3832 |
rmuC |
-14.29 |
0.017807 |
191 -- 257 |
1 -- 50 |
DNA recombination protein |
|
_____________190___________________________________________________________________258\n_____________|_____________________________________________________________________|\n5'-AAA...GCGUC______CGUUG___A____UCAAUCA____UUAC_______UU_____G___________GCAA_____UGGCU...AGC-3'\n______________AGGAGG_____UGG_UUUC_______UGGU____GCAGUUA__GCGUU__GUGGG_UGUG____UUGGC\n______________||||||_____|||_||:|_______||||____:|||:||__||:||__:||||_|:||____|::||\n______________UCCUCC_____ACC_AAGG_______ACCA____UGUCGAU__CGUAA__UACCC_AUAC____AGUCG\n3'-UUU...CCGAU________________________________________________AA_____A____AAAA_____-5'\n_____________|____________________________________________________________________|\n_____________51___________________________________________________________________1\n |
225 -- 231 |
27 -- 33 |
-40.6833 kcal/mol |
21.7322 kcal/mol |
4.6634 kcal/mol |
190 258@LB@ | |@LB@5'-AAA...GCGUC CGUUG A UCAAUCA UUAC UU G GCAA UGGCU...AGC-3'@LB@ AGGAGG UGG UUUC UGGU GCAGUUA GCGUU GUGGG UGUG UUGGC@LB@ |||||| ||| ||:| |||| :|||:|| ||:|| :|||| |:|| |::||@LB@ UCCUCC ACC AAGG ACCA UGUCGAU CGUAA UACCC AUAC AGUCG@LB@3'-UUU...CCGAU AA A AAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -40.6833 kcal/mol@LB@Unfolding Energy - mRNA 21.7322 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 191 -- 257@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 197 |
0.01153 |
0.1967 |
b0610 |
rnk |
-10.49 |
0.135367 |
130 -- 162 |
7 -- 39 |
regulator of nucleoside diphosphate kinase |
|
_____________129__________________________________163\n_____________|____________________________________|\n5'-UCU...CGCCG___________G__G_____CUUU____________AUCUG...CGU-3'\n______________CCUG__ACGGU_AG_GUUUU____UGGG_UAUGUUU\n______________||||__||:|:_||_:||||____||||_|||||||\n______________GGAC__UGUCG_UC_UAAAA____ACCC_AUACAAA\n3'-UUU...ACCAA____CA_____A__G_____U_______A_______AAGUCG-5'\n_____________|____________________________________|\n_____________40___________________________________6\n |
156 -- 162 |
7 -- 13 |
-25.6411 kcal/mol |
10.5512 kcal/mol |
4.60345 kcal/mol |
129 163@LB@ | |@LB@5'-UCU...CGCCG G G CUUU AUCUG...CGU-3'@LB@ CCUG ACGGU AG GUUUU UGGG UAUGUUU@LB@ |||| ||:|: || :|||| |||| |||||||@LB@ GGAC UGUCG UC UAAAA ACCC AUACAAA@LB@3'-UUU...ACCAA CA A G U A AAGUCG-5'@LB@ | |@LB@ 40 6@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.6411 kcal/mol@LB@Unfolding Energy - mRNA 10.5512 kcal/mol@LB@Unfolding Energy - sRNA 4.60345 kcal/mol@LB@@LB@Position - mRNA 130 -- 162@LB@Position - sRNA 7 -- 39@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 118 |
0.00496 |
0.1407 |
b1128 |
roxA |
-15.27 |
0.009267 |
80 -- 105 |
22 -- 49 |
50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase |
|
_____________79___________________________106\n_____________|____________________________|\n5'-UGG...CGGAU_______A_____________C______CUGCG...ACC-3'\n______________GGAGGUG_UUUUUGGU_C_GC_AGCAUU\n______________|||||||_||::||||_|_||_||||||\n______________CCUCCAC_AAGGACCA_G_CG_UCGUAA\n3'-UUU...CGAUU_______C________U_U__A______AAUAC...UCG-5'\n_____________|____________________________|\n_____________50___________________________21\n |
80 -- 86 |
43 -- 49 |
-30.554 kcal/mol |
10.7239 kcal/mol |
4.55979 kcal/mol |
79 106@LB@ | |@LB@5'-UGG...CGGAU A C CUGCG...ACC-3'@LB@ GGAGGUG UUUUUGGU C GC AGCAUU@LB@ ||||||| ||::|||| | || ||||||@LB@ CCUCCAC AAGGACCA G CG UCGUAA@LB@3'-UUU...CGAUU C U U A AAUAC...UCG-5'@LB@ | |@LB@ 50 21@LB@@LB@@LB@Energy -15.27 kcal/mol@LB@Hybridization Energy -30.554 kcal/mol@LB@Unfolding Energy - mRNA 10.7239 kcal/mol@LB@Unfolding Energy - sRNA 4.55979 kcal/mol@LB@@LB@Position - mRNA 80 -- 105@LB@Position - sRNA 22 -- 49@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 43 -- 49@LB@ |
