| 114 |
0.004808 |
0.1404 |
b2372 |
yfdV |
-9.14 |
0.236047 |
240 -- 266 |
1 -- 35 |
putative transporter |
|
_____________239____________________________________267\n_____________|______________________________________|\n5'-UUC...UUAUC___AU__U______________________________GGCAG...CUC-3'\n______________GUA__CA_GCU_GU______UGGGUUAU____UUUAGC\n______________|||__||_|||_|:______||||||||____||:|||\n______________CAU__GU_CGA_CG______ACCCAAUA____AAGUCG\n3'-UUU...AGGAC___________U__UAAAAU________CAAA______-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
254 -- 260 |
11 -- 17 |
-17.7969 kcal/mol |
7.16419 kcal/mol |
1.49508 kcal/mol |
239 267@LB@ | |@LB@5'-UUC...UUAUC AU U GGCAG...CUC-3'@LB@ GUA CA GCU GU UGGGUUAU UUUAGC@LB@ ||| || ||| |: |||||||| ||:|||@LB@ CAU GU CGA CG ACCCAAUA AAGUCG@LB@3'-UUU...AGGAC U UAAAAU CAAA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -17.7969 kcal/mol@LB@Unfolding Energy - mRNA 7.16419 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 240 -- 266@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 190 |
0.0109 |
0.1919 |
b2749 |
ygbE |
-11.00 |
0.107048 |
99 -- 107 |
29 -- 37 |
DUF3561 family inner membrane protein |
|
_____________98________108\n_____________|_________|\n5'-UGC...AAAUU_________AAUUA...UCU-3'\n______________UGGUACAGC\n______________|||||||||\n______________ACCAUGUCG\n3'-UUU...CAAGG_________AUCGU...UCG-5'\n_____________|_________|\n_____________38________28\n |
101 -- 107 |
29 -- 35 |
-15.5774 kcal/mol |
2.20256 kcal/mol |
2.37218 kcal/mol |
98 108@LB@ | |@LB@5'-UGC...AAAUU AAUUA...UCU-3'@LB@ UGGUACAGC@LB@ |||||||||@LB@ ACCAUGUCG@LB@3'-UUU...CAAGG AUCGU...UCG-5'@LB@ | |@LB@ 38 28@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -15.5774 kcal/mol@LB@Unfolding Energy - mRNA 2.20256 kcal/mol@LB@Unfolding Energy - sRNA 2.37218 kcal/mol@LB@@LB@Position - mRNA 99 -- 107@LB@Position - sRNA 29 -- 37@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 64 |
0.001739 |
0.09016 |
b4463 |
ygcU |
-11.99 |
0.066010 |
140 -- 150 |
36 -- 46 |
putative FAD-linked oxidoreductase |
|
_____________139_________151\n_____________|___________|\n5'-AUC...AUAAC___________UUUUC...UUG-3'\n______________GGUGGUUUCUG\n______________|||||||:|||\n______________CCACCAAGGAC\n3'-UUU...UUCCU___________CAUGU...UCG-5'\n_____________|___________|\n_____________47__________35\n |
144 -- 150 |
36 -- 42 |
-19.2157 kcal/mol |
4.08908 kcal/mol |
3.13564 kcal/mol |
139 151@LB@ | |@LB@5'-AUC...AUAAC UUUUC...UUG-3'@LB@ GGUGGUUUCUG@LB@ |||||||:|||@LB@ CCACCAAGGAC@LB@3'-UUU...UUCCU CAUGU...UCG-5'@LB@ | |@LB@ 47 35@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -19.2157 kcal/mol@LB@Unfolding Energy - mRNA 4.08908 kcal/mol@LB@Unfolding Energy - sRNA 3.13564 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 36 -- 46@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 103 |
0.00377 |
0.123 |
b2922 |
yggE |
-10.91 |
0.111523 |
45 -- 69 |
24 -- 45 |
oxidative stress defense protein |
|
_____________44________________________70\n_____________|_________________________|\n5'-GCA...GUUAU_______AU__CCU___________AGAGA...CCG-3'\n______________GUGGUUU__UG___UGCAGCUGGCG\n______________||||||:__||___|:|||||:||:\n______________CACCAAG__AC___AUGUCGAUCGU\n3'-UUU...UCCUC_______G___C_____________AAAAU...UCG-5'\n_____________|_________________________|\n_____________46________________________23\n |
63 -- 69 |
24 -- 30 |
-26.0515 kcal/mol |
10.579 kcal/mol |
4.55794 kcal/mol |
44 70@LB@ | |@LB@5'-GCA...GUUAU AU CCU AGAGA...CCG-3'@LB@ GUGGUUU UG UGCAGCUGGCG@LB@ ||||||: || |:|||||:||:@LB@ CACCAAG AC AUGUCGAUCGU@LB@3'-UUU...UCCUC G C AAAAU...UCG-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -26.0515 kcal/mol@LB@Unfolding Energy - mRNA 10.579 kcal/mol@LB@Unfolding Energy - sRNA 4.55794 kcal/mol@LB@@LB@Position - mRNA 45 -- 69@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 135 |
0.005891 |
0.146 |
b3009 |
yghB |
-12.71 |
0.045213 |
257 -- 299 |
7 -- 46 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________256_________________________________________300\n_____________|___________________________________________|\n5'-UCU...GCGCU__C__A____CA___U_________GUUUACUUU__C______G-3'\n______________GG_GG_UCCU__UAU_GUUAGCGUU_________GU_AUGUUU\n______________||_||_||||__||:_|:||||:||_________||_||||||\n______________CC_CC_AGGA__AUG_CGAUCGUAA_________CA_UACAAA\n3'-UUU...UUCCU__A__A____CC___U_________AAUACC_____A______AAGUCG-5'\n_____________|___________________________________________|\n_____________47__________________________________________6\n |
275 -- 281 |
22 -- 28 |
-27.0814 kcal/mol |
9.76724 kcal/mol |
4.60844 kcal/mol |
256 300@LB@ | |@LB@5'-UCU...GCGCU C A CA U GUUUACUUU C G-3'@LB@ GG GG UCCU UAU GUUAGCGUU GU AUGUUU@LB@ || || |||| ||: |:||||:|| || ||||||@LB@ CC CC AGGA AUG CGAUCGUAA CA UACAAA@LB@3'-UUU...UUCCU A A CC U AAUACC A AAGUCG-5'@LB@ | |@LB@ 47 6@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -27.0814 kcal/mol@LB@Unfolding Energy - mRNA 9.76724 kcal/mol@LB@Unfolding Energy - sRNA 4.60844 kcal/mol@LB@@LB@Position - mRNA 257 -- 299@LB@Position - sRNA 7 -- 46@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 49 |
0.001147 |
0.07744 |
b3039 |
ygiD |
-13.27 |
0.032900 |
280 -- 298 |
15 -- 33 |
4 5- DOPA-extradiol-dioxygenase |
|
_____________279_________________299\n_____________|___________________|\n5'-ACG...UACCC__________GAAGU____GA-3'\n______________GCAGCUGGCA_____UGGG\n______________:|||||:|||_____||||\n______________UGUCGAUCGU_____ACCC\n3'-UUU...GACCA__________AAAAU____AAUAC...UCG-5'\n_____________|___________________|\n_____________34__________________14\n |
283 -- 289 |
24 -- 30 |
-23.43 kcal/mol |
8.71058 kcal/mol |
1.44754 kcal/mol |
279 299@LB@ | |@LB@5'-ACG...UACCC GAAGU GA-3'@LB@ GCAGCUGGCA UGGG@LB@ :|||||:||| ||||@LB@ UGUCGAUCGU ACCC@LB@3'-UUU...GACCA AAAAU AAUAC...UCG-5'@LB@ | |@LB@ 34 14@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -23.43 kcal/mol@LB@Unfolding Energy - mRNA 8.71058 kcal/mol@LB@Unfolding Energy - sRNA 1.44754 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 15 -- 33@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 72 |
0.001945 |
0.09081 |
b3024 |
ygiW |
-9.51 |
0.204072 |
108 -- 126 |
18 -- 35 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________107_________________127\n_____________|___________________|\n5'-UGA...GCUCU_______ACUAA_______UUUUU...AAA-3'\n______________GUACAGC_____AUUUUAU\n______________|||||||_____|||||||\n______________CAUGUCG_____UAAAAUA\n3'-UUU...AGGAC_______AUCG________CCCAA...UCG-5'\n_____________|___________________|\n_____________36__________________17\n |
120 -- 126 |
18 -- 24 |
-13.5355 kcal/mol |
2.57979 kcal/mol |
1.44471 kcal/mol |
107 127@LB@ | |@LB@5'-UGA...GCUCU ACUAA UUUUU...AAA-3'@LB@ GUACAGC AUUUUAU@LB@ ||||||| |||||||@LB@ CAUGUCG UAAAAUA@LB@3'-UUU...AGGAC AUCG CCCAA...UCG-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.5355 kcal/mol@LB@Unfolding Energy - mRNA 2.57979 kcal/mol@LB@Unfolding Energy - sRNA 1.44471 kcal/mol@LB@@LB@Position - mRNA 108 -- 126@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 150 |
0.00729 |
0.1634 |
b3184 |
yhbE |
-11.29 |
0.093352 |
190 -- 235 |
1 -- 50 |
EamA family inner membrane putative transporter |
|
_____________189_________________________________________________236\n_____________|___________________________________________________|\n5'-AAG...UUGCA____AUAC___A____AA_____A____GGCAU___CAUUC__________GCUCA...UGG-3'\n______________GGGA____GGU___UG__GCAGC_GGCA_____UGG________UUUUGGC\n______________:|||____|||___||__:||||_:|||_____|||________|||::||\n______________UCCU____CCA___AC__UGUCG_UCGU_____ACC________AAAGUCG\n3'-UUU...CCGAU____CCA____AGG__CA_____A____AAAAU___CAAUACAA_______-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-25.8939 kcal/mol |
9.93833 kcal/mol |
4.6634 kcal/mol |
189 236@LB@ | |@LB@5'-AAG...UUGCA AUAC A AA A GGCAU CAUUC GCUCA...UGG-3'@LB@ GGGA GGU UG GCAGC GGCA UGG UUUUGGC@LB@ :||| ||| || :|||| :||| ||| |||::||@LB@ UCCU CCA AC UGUCG UCGU ACC AAAGUCG@LB@3'-UUU...CCGAU CCA AGG CA A AAAAU CAAUACAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.8939 kcal/mol@LB@Unfolding Energy - mRNA 9.93833 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 235@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 170 |
0.009245 |
0.1803 |
b3205 |
yhbJ |
-9.78 |
0.183109 |
251 -- 276 |
13 -- 39 |
adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase |
|
_____________250__________________________277\n_____________|____________________________|\n5'-CGG...GUCGC____C__________AAGA_________UUUAC...CCG-3'\n______________CCUG_GUGC_GCUGG_____UAUGGGUU\n______________||||_||:|_|||:|_____||||||||\n______________GGAC_CAUG_CGAUC_____AUACCCAA\n3'-UUU...ACCAA_________U_____GUAAA________UACAA...UCG-5'\n_____________|____________________________|\n_____________40___________________________12\n |
270 -- 276 |
13 -- 19 |
-27.4258 kcal/mol |
13.0784 kcal/mol |
4.56849 kcal/mol |
250 277@LB@ | |@LB@5'-CGG...GUCGC C AAGA UUUAC...CCG-3'@LB@ CCUG GUGC GCUGG UAUGGGUU@LB@ |||| ||:| |||:| ||||||||@LB@ GGAC CAUG CGAUC AUACCCAA@LB@3'-UUU...ACCAA U GUAAA UACAA...UCG-5'@LB@ | |@LB@ 40 12@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -27.4258 kcal/mol@LB@Unfolding Energy - mRNA 13.0784 kcal/mol@LB@Unfolding Energy - sRNA 4.56849 kcal/mol@LB@@LB@Position - mRNA 251 -- 276@LB@Position - sRNA 13 -- 39@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 25 |
0.0003503 |
0.04652 |
b3233 |
yhcB |
-13.45 |
0.029595 |
190 -- 239 |
1 -- 50 |
DUF1043 family inner membrane-anchored protein |
|
_____________189_______________________________________________________240\n_____________|_________________________________________________________|\n5'-UUU...ACAAC_____AU____CAUGA_____GA___U______UAAU_________GUCG_______AUCAU...CGU-3'\n______________GGGAG___GUU_____CCUGG__AUA_GC__GC______UGGGUUA______UCGGC\n______________:||||___|||_____|||||__|:|_||__||______|||||||______||:||\n______________UCCUC___CAA_____GGACC__UGU_CG__CG______ACCCAAU______AGUCG\n3'-UUU...CCGAU_____CAC_____________A_______AU__UAAAAU_______ACAAAA_____-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
224 -- 230 |
12 -- 18 |
-32.3864 kcal/mol |
14.269 kcal/mol |
4.6634 kcal/mol |
189 240@LB@ | |@LB@5'-UUU...ACAAC AU CAUGA GA U UAAU GUCG AUCAU...CGU-3'@LB@ GGGAG GUU CCUGG AUA GC GC UGGGUUA UCGGC@LB@ :|||| ||| ||||| |:| || || ||||||| ||:||@LB@ UCCUC CAA GGACC UGU CG CG ACCCAAU AGUCG@LB@3'-UUU...CCGAU CAC A AU UAAAAU ACAAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -13.45 kcal/mol@LB@Hybridization Energy -32.3864 kcal/mol@LB@Unfolding Energy - mRNA 14.269 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 239@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 12 -- 18@LB@ |
