| 142 |
0.006672 |
0.1579 |
b3168 |
infB |
-12.04 |
0.064271 |
249 -- 267 |
29 -- 45 |
translation initiation factor IF-2 |
|
_____________248_________________268\n_____________|___________________|\n5'-AAG...CCUCC____AACG___________AAUUU...CUG-3'\n______________GUGG____CCUGGUACAGC\n______________||||____|||||||||||\n______________CACC____GGACCAUGUCG\n3'-UUU...UCCUC____AA_____________AUCGU...UCG-5'\n_____________|___________________|\n_____________46__________________28\n |
261 -- 267 |
29 -- 35 |
-27.2517 kcal/mol |
10.9083 kcal/mol |
4.30037 kcal/mol |
248 268@LB@ | |@LB@5'-AAG...CCUCC AACG AAUUU...CUG-3'@LB@ GUGG CCUGGUACAGC@LB@ |||| |||||||||||@LB@ CACC GGACCAUGUCG@LB@3'-UUU...UCCUC AA AUCGU...UCG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -27.2517 kcal/mol@LB@Unfolding Energy - mRNA 10.9083 kcal/mol@LB@Unfolding Energy - sRNA 4.30037 kcal/mol@LB@@LB@Position - mRNA 249 -- 267@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 183 |
0.01048 |
0.1919 |
b1250 |
kch |
-17.60 |
0.001460 |
228 -- 258 |
1 -- 33 |
voltage-gated potassium channel |
|
_____________227_______________________________259\n_____________|_________________________________|\n5'-AAC...AACAA_____AACAAA_________GACCC________ACGAC...UUA-3'\n______________ACAGC______UUUAUGGGU_______UUCGGC\n______________|||||______|||||||||_______|||:||\n______________UGUCG______AAAUACCCA_______AAGUCG\n3'-UUU...GACCA_____AUCGUA_________AUACAAA______-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
241 -- 247 |
14 -- 20 |
-24.8286 kcal/mol |
5.73827 kcal/mol |
1.49313 kcal/mol |
227 259@LB@ | |@LB@5'-AAC...AACAA AACAAA GACCC ACGAC...UUA-3'@LB@ ACAGC UUUAUGGGU UUCGGC@LB@ ||||| ||||||||| |||:||@LB@ UGUCG AAAUACCCA AAGUCG@LB@3'-UUU...GACCA AUCGUA AUACAAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -17.60 kcal/mol@LB@Hybridization Energy -24.8286 kcal/mol@LB@Unfolding Energy - mRNA 5.73827 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 228 -- 258@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 58 |
0.001429 |
0.08147 |
b0698 |
kdpA |
-14.04 |
0.020858 |
136 -- 172 |
7 -- 35 |
potassium translocating ATPase subunit A |
|
_____________135___________________________________173\n_____________|_____________________________________|\n5'-GCU...CCGGC____U___________UAUUAC________CUG____AUGCC...ACA-3'\n______________GUAU_GCUGGUGUUUU______UGGGUUAU___GUUU\n______________|||:_|||:|::||||______||||||||___||||\n______________CAUG_CGAUCGUAAAA______ACCCAAUA___CAAA\n3'-UUU...AGGAC____U___________U____________________AAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________6\n |
159 -- 165 |
11 -- 17 |
-23.8836 kcal/mol |
8.35779 kcal/mol |
1.49058 kcal/mol |
135 173@LB@ | |@LB@5'-GCU...CCGGC U UAUUAC CUG AUGCC...ACA-3'@LB@ GUAU GCUGGUGUUUU UGGGUUAU GUUU@LB@ |||: |||:|::|||| |||||||| ||||@LB@ CAUG CGAUCGUAAAA ACCCAAUA CAAA@LB@3'-UUU...AGGAC U U AAGUCG-5'@LB@ | |@LB@ 36 6@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -23.8836 kcal/mol@LB@Unfolding Energy - mRNA 8.35779 kcal/mol@LB@Unfolding Energy - sRNA 1.49058 kcal/mol@LB@@LB@Position - mRNA 136 -- 172@LB@Position - sRNA 7 -- 35@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 113 |
0.004738 |
0.1404 |
b3197 |
kdsD |
-14.34 |
0.017174 |
210 -- 240 |
1 -- 35 |
D-arabinose 5-phosphate isomerase |
|
_____________209_________________________________241\n_____________|___________________________________|\n5'-AGG...CGCAC___G________ACC________U__AC_______AAGCA...ACA-3'\n______________GUA_AGUUA_CA______GGGUU_UG__UUUCAGC\n______________|||_||:||_||______|||||_||__|||||||\n______________CAU_UCGAU_GU______CCCAA_AC__AAAGUCG\n3'-UUU...AGGAC___G_____C__AAAAUA_____U__AA_______-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
234 -- 240 |
1 -- 7 |
-24.924 kcal/mol |
9.08416 kcal/mol |
1.49508 kcal/mol |
209 241@LB@ | |@LB@5'-AGG...CGCAC G ACC U AC AAGCA...ACA-3'@LB@ GUA AGUUA CA GGGUU UG UUUCAGC@LB@ ||| ||:|| || ||||| || |||||||@LB@ CAU UCGAU GU CCCAA AC AAAGUCG@LB@3'-UUU...AGGAC G C AAAAUA U AA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.924 kcal/mol@LB@Unfolding Energy - mRNA 9.08416 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 210 -- 240@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 160 |
0.008086 |
0.1694 |
b3350 |
kefB |
-10.41 |
0.139805 |
251 -- 273 |
23 -- 46 |
potassium:proton antiporter |
|
_____________250______________________274\n_____________|________________________|\n5'-UAC...GCGGC_____C_G_______C________CGCGG...UGG-3'\n______________GGUGG_U_C_GGUGC_GCUGGCAU\n______________|||||_|_|_|||:|_|||:||||\n______________CCACC_A_G_CCAUG_CGAUCGUA\n3'-UUU...UUCCU_____A_G_A_____U________AAAUA...UCG-5'\n_____________|________________________|\n_____________47_______________________22\n |
267 -- 273 |
23 -- 29 |
-29.1074 kcal/mol |
14.1356 kcal/mol |
4.5585 kcal/mol |
250 274@LB@ | |@LB@5'-UAC...GCGGC C G C CGCGG...UGG-3'@LB@ GGUGG U C GGUGC GCUGGCAU@LB@ ||||| | | |||:| |||:||||@LB@ CCACC A G CCAUG CGAUCGUA@LB@3'-UUU...UUCCU A G A U AAAUA...UCG-5'@LB@ | |@LB@ 47 22@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -29.1074 kcal/mol@LB@Unfolding Energy - mRNA 14.1356 kcal/mol@LB@Unfolding Energy - sRNA 4.5585 kcal/mol@LB@@LB@Position - mRNA 251 -- 273@LB@Position - sRNA 23 -- 46@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 27 |
0.0003737 |
0.04652 |
b2828 |
lgt |
-19.83 |
0.000134 |
254 -- 300 |
13 -- 50 |
phosphatidylglycerol-prolipoprotein diacylglyceryl transferase |
|
_____________253____________________________________________300\n_____________|______________________________________________|\n5'-CCU...UCAAU____CCC____CGC___A__________CUGAU____CUG_______-3'\n______________AGGA___GUGG___UUC_CUGGUACGGC_____GUAU___GUGGGUU\n______________||||___||||___|||_|||||||:||_____|:||___:||||||\n______________UCCU___CACC___AAG_GACCAUGUCG_____CGUA___UACCCAA\n3'-UUU...CCGAU____C_______________________AU_______AAA_______UACAA...UCG-5'\n_____________|_______________________________________________|\n_____________51______________________________________________12\n |
294 -- 300 |
13 -- 19 |
-39.0639 kcal/mol |
14.6059 kcal/mol |
4.62837 kcal/mol |
253 300@LB@ | |@LB@5'-CCU...UCAAU CCC CGC A CUGAU CUG -3'@LB@ AGGA GUGG UUC CUGGUACGGC GUAU GUGGGUU@LB@ |||| |||| ||| |||||||:|| |:|| :||||||@LB@ UCCU CACC AAG GACCAUGUCG CGUA UACCCAA@LB@3'-UUU...CCGAU C AU AAA UACAA...UCG-5'@LB@ | |@LB@ 51 12@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -39.0639 kcal/mol@LB@Unfolding Energy - mRNA 14.6059 kcal/mol@LB@Unfolding Energy - sRNA 4.62837 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 13 -- 50@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 35 |
0.0006725 |
0.06313 |
b3455 |
livG |
-12.92 |
0.040223 |
97 -- 112 |
32 -- 46 |
branched-chain amino acid ABC transporter ATPase |
|
_____________96_______________113\n_____________|________________|\n5'-AUG...UGCUC________GA______UGAUG...UCG-3'\n______________GGUGGUUU__UGGUGC\n______________|||||||:__||||:|\n______________CCACCAAG__ACCAUG\n3'-UUU...UUCCU________G_______UCGAU...UCG-5'\n_____________|________________|\n_____________47_______________31\n |
98 -- 104 |
39 -- 45 |
-21.8288 kcal/mol |
5.65514 kcal/mol |
3.25632 kcal/mol |
96 113@LB@ | |@LB@5'-AUG...UGCUC GA UGAUG...UCG-3'@LB@ GGUGGUUU UGGUGC@LB@ |||||||: ||||:|@LB@ CCACCAAG ACCAUG@LB@3'-UUU...UUCCU G UCGAU...UCG-5'@LB@ | |@LB@ 47 31@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -21.8288 kcal/mol@LB@Unfolding Energy - mRNA 5.65514 kcal/mol@LB@Unfolding Energy - sRNA 3.25632 kcal/mol@LB@@LB@Position - mRNA 97 -- 112@LB@Position - sRNA 32 -- 46@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 32 |
0.0005297 |
0.05563 |
b3456 |
livM |
-14.95 |
0.011565 |
245 -- 274 |
15 -- 42 |
branched-chain amino acid ABC transporter permease |
|
_____________244____________________________275\n_____________|______________________________|\n5'-GCC...GCGAU______U____U___G_____C________CGUGC...CCA-3'\n______________GUUCUU_GUGC_GGC_GGCGU_UUUAUGGG\n______________||||:|_||:|_:||_:||:|_||||||||\n______________CAAGGA_CAUG_UCG_UCGUA_AAAUACCC\n3'-UUU...UCCAC______C________A______________AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
268 -- 274 |
15 -- 21 |
-29.6256 kcal/mol |
10.1077 kcal/mol |
4.57031 kcal/mol |
244 275@LB@ | |@LB@5'-GCC...GCGAU U U G C CGUGC...CCA-3'@LB@ GUUCUU GUGC GGC GGCGU UUUAUGGG@LB@ ||||:| ||:| :|| :||:| ||||||||@LB@ CAAGGA CAUG UCG UCGUA AAAUACCC@LB@3'-UUU...UCCAC C A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -14.95 kcal/mol@LB@Hybridization Energy -29.6256 kcal/mol@LB@Unfolding Energy - mRNA 10.1077 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 63 |
0.00172 |
0.09016 |
b1209 |
lolB |
-15.80 |
0.006355 |
144 -- 167 |
11 -- 36 |
lipoprotein localization factor |
|
_____________143________________________168\n_____________|__________________________|\n5'-AAU...CGGAC____AC_________AA_________AACUG...GCC-3'\n______________GGUA__GCUAGCAUU____GGGUUAU\n______________||||__|||||||||____|||||||\n______________CCAU__CGAUCGUAA____CCCAAUA\n3'-UUU...AAGGA____GU_________AAUA_______CAAAA...UCG-5'\n_____________|__________________________|\n_____________37_________________________10\n |
161 -- 167 |
11 -- 17 |
-25.6291 kcal/mol |
8.35909 kcal/mol |
1.47376 kcal/mol |
143 168@LB@ | |@LB@5'-AAU...CGGAC AC AA AACUG...GCC-3'@LB@ GGUA GCUAGCAUU GGGUUAU@LB@ |||| ||||||||| |||||||@LB@ CCAU CGAUCGUAA CCCAAUA@LB@3'-UUU...AAGGA GU AAUA CAAAA...UCG-5'@LB@ | |@LB@ 37 10@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -25.6291 kcal/mol@LB@Unfolding Energy - mRNA 8.35909 kcal/mol@LB@Unfolding Energy - sRNA 1.47376 kcal/mol@LB@@LB@Position - mRNA 144 -- 167@LB@Position - sRNA 11 -- 36@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 11 -- 17@LB@ |
