| 191 |
0.01094 |
0.1919 |
b3554 |
yiaF |
-11.44 |
0.087025 |
256 -- 281 |
6 -- 37 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________255______________________________282\n_____________|________________________________|\n5'-AAU...AUUAA_____________CUGA_______________GAUAA...AGC-3'\n______________UGGU__AGUUAGC_____GUGGGU___GUUUU\n______________||||__||:||||_____:|||||___|||||\n______________ACCA__UCGAUCG_____UACCCA___CAAAA\n3'-UUU...CAAGG____UG_______UAAAA______AUA_____AGUCG-5'\n_____________|________________________________|\n_____________38_______________________________5\n |
260 -- 266 |
25 -- 31 |
-21.639 kcal/mol |
7.5014 kcal/mol |
2.70019 kcal/mol |
255 282@LB@ | |@LB@5'-AAU...AUUAA CUGA GAUAA...AGC-3'@LB@ UGGU AGUUAGC GUGGGU GUUUU@LB@ |||| ||:|||| :||||| |||||@LB@ ACCA UCGAUCG UACCCA CAAAA@LB@3'-UUU...CAAGG UG UAAAA AUA AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.639 kcal/mol@LB@Unfolding Energy - mRNA 7.5014 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 256 -- 281@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 161 |
0.008114 |
0.1694 |
b3656 |
yicI |
-11.96 |
0.067144 |
124 -- 143 |
14 -- 37 |
putative alpha-glucosidase |
b3878 |
_____________123______________________144\n_____________|________________________|\n5'-ACA...CGUUA___A_________UCA________AAACG...UGG-3'\n______________UGG_ACAGCUGGC_______GGGU\n______________|||_||||||:||_______||||\n______________ACC_UGUCGAUCG_______CCCA\n3'-UUU...CAAGG___A_________UAAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
130 -- 136 |
25 -- 31 |
-23.0355 kcal/mol |
8.41802 kcal/mol |
2.65978 kcal/mol |
123 144@LB@ | |@LB@5'-ACA...CGUUA A UCA AAACG...UGG-3'@LB@ UGG ACAGCUGGC GGGU@LB@ ||| ||||||:|| ||||@LB@ ACC UGUCGAUCG CCCA@LB@3'-UUU...CAAGG A UAAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -23.0355 kcal/mol@LB@Unfolding Energy - mRNA 8.41802 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 124 -- 143@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 88 |
0.002837 |
0.1082 |
b4377 |
yjjU |
-10.09 |
0.160689 |
120 -- 144 |
1 -- 33 |
putative patatin-like family phospholipase |
|
_____________119________________________________145\n_____________|__________________________________|\n5'-AGG...GUCCA____A___________C_________________GAAUA...GAC-3'\n______________GCGG_CUGGC_UUUUG_GG________UUUUAGC\n______________:|:|_||:||_||||:_||________|||:|||\n______________UGUC_GAUCG_AAAAU_CC________AAAGUCG\n3'-UUU...GACCA__________U_____A__CAAUACAA_______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
138 -- 144 |
1 -- 7 |
-20.956 kcal/mol |
9.37145 kcal/mol |
1.49313 kcal/mol |
119 145@LB@ | |@LB@5'-AGG...GUCCA A C GAAUA...GAC-3'@LB@ GCGG CUGGC UUUUG GG UUUUAGC@LB@ :|:| ||:|| ||||: || |||:|||@LB@ UGUC GAUCG AAAAU CC AAAGUCG@LB@3'-UUU...GACCA U A CAAUACAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -20.956 kcal/mol@LB@Unfolding Energy - mRNA 9.37145 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 120 -- 144@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 18 |
0.0001426 |
0.02662 |
b1824 |
yobF |
-14.57 |
0.014857 |
186 -- 218 |
1 -- 36 |
DUF2527 family heat-induced protein |
|
_____________185__________________________________219\n_____________|____________________________________|\n5'-GCC...AACGA____________UG______U__GGCA_________AAAGA...UGU-3'\n______________GGUACAGUU__C__UUUAUG_GU_____UUUUCAGU\n______________|||||||:|__|__||||||_||_____|||||||:\n______________CCAUGUCGA__G__AAAUAC_CA_____AAAAGUCG\n3'-UUU...AAGGA_________UC_UA______C__AUACA________-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
212 -- 218 |
1 -- 7 |
-24.9268 kcal/mol |
8.86182 kcal/mol |
1.49509 kcal/mol |
185 219@LB@ | |@LB@5'-GCC...AACGA UG U GGCA AAAGA...UGU-3'@LB@ GGUACAGUU C UUUAUG GU UUUUCAGU@LB@ |||||||:| | |||||| || |||||||:@LB@ CCAUGUCGA G AAAUAC CA AAAAGUCG@LB@3'-UUU...AAGGA UC UA C AUACA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -24.9268 kcal/mol@LB@Unfolding Energy - mRNA 8.86182 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 186 -- 218@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 85 |
0.002796 |
0.1082 |
b4536 |
yobH |
-12.68 |
0.045962 |
237 -- 287 |
1 -- 38 |
uncharacterized protein |
|
_____________236__________________________________________________288\n_____________|____________________________________________________|\n5'-CAA...UAGCA_________AUAGGAUUAUUA__C____GA______C___U__A__GGA___AAAGA...CCG-3'\n______________CUGGUAUGG____________CU_AGCG___UAUGG_GUU_UG_UU___AGC\n______________||||||::|____________||_|||:___|||||_|||_||_||___|||\n______________GACCAUGUC____________GA_UCGU___AUACC_CAA_AC_AA___UCG\n3'-UUU...CCAAG____________________________AAA_________U__A__AAG___-5'\n_____________|___________________________________________________|\n_____________39__________________________________________________1\n |
239 -- 245 |
30 -- 36 |
-25.5821 kcal/mol |
8.3664 kcal/mol |
4.54019 kcal/mol |
236 288@LB@ | |@LB@5'-CAA...UAGCA AUAGGAUUAUUA C GA C U A GGA AAAGA...CCG-3'@LB@ CUGGUAUGG CU AGCG UAUGG GUU UG UU AGC@LB@ ||||||::| || |||: ||||| ||| || || |||@LB@ GACCAUGUC GA UCGU AUACC CAA AC AA UCG@LB@3'-UUU...CCAAG AAA U A AAG -5'@LB@ | |@LB@ 39 1@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -25.5821 kcal/mol@LB@Unfolding Energy - mRNA 8.3664 kcal/mol@LB@Unfolding Energy - sRNA 4.54019 kcal/mol@LB@@LB@Position - mRNA 237 -- 287@LB@Position - sRNA 1 -- 38@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 19 |
0.000151 |
0.02671 |
b2142 |
yohK |
-18.84 |
0.000427 |
90 -- 130 |
4 -- 49 |
LrgB family inner membrane protein |
|
_____________89______________________________________________131\n_____________|_______________________________________________|\n5'-GUA...GGCCC__UA____U_____________C____CGCU______G_________UGGUG...CGU-3'\n______________GG__GUGG_UUCCU_GUGCAGU_AGUA_______GGU___GUUUUUC\n______________||__||||_|||||_||:|||:_||:|_______|||___|||||||\n______________CC__CACC_AAGGA_CAUGUCG_UCGU_______CCA___CAAAAAG\n3'-UUU...CGAUU__UC__________C_______A____AAAAUAC___AUA_______UCG-5'\n_____________|_______________________________________________|\n_____________50______________________________________________3\n |
124 -- 130 |
4 -- 10 |
-35.205 kcal/mol |
11.7562 kcal/mol |
4.60954 kcal/mol |
89 131@LB@ | |@LB@5'-GUA...GGCCC UA U C CGCU G UGGUG...CGU-3'@LB@ GG GUGG UUCCU GUGCAGU AGUA GGU GUUUUUC@LB@ || |||| ||||| ||:|||: ||:| ||| |||||||@LB@ CC CACC AAGGA CAUGUCG UCGU CCA CAAAAAG@LB@3'-UUU...CGAUU UC C A AAAAUAC AUA UCG-5'@LB@ | |@LB@ 50 3@LB@@LB@@LB@Energy -18.84 kcal/mol@LB@Hybridization Energy -35.205 kcal/mol@LB@Unfolding Energy - mRNA 11.7562 kcal/mol@LB@Unfolding Energy - sRNA 4.60954 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 4 -- 49@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 4 |
1.432e-06 |
0.001203 |
b4547 |
ypfN |
-14.60 |
0.014593 |
223 -- 236 |
33 -- 46 |
putative membrane protein UPF0370 family |
|
_____________222____________237\n_____________|______________|\n5'-UGA...AUAUU_____A________AUUGU...AGA-3'\n______________GGUGG_UUCUGGUG\n______________|||||_|:|||||:\n______________CCACC_AGGACCAU\n3'-UUU...UUCCU_____A________GUCGA...UCG-5'\n_____________|______________|\n_____________47_____________32\n |
230 -- 236 |
33 -- 39 |
-20.5459 kcal/mol |
2.69728 kcal/mol |
3.25117 kcal/mol |
222 237@LB@ | |@LB@5'-UGA...AUAUU A AUUGU...AGA-3'@LB@ GGUGG UUCUGGUG@LB@ ||||| |:|||||:@LB@ CCACC AGGACCAU@LB@3'-UUU...UUCCU A GUCGA...UCG-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -20.5459 kcal/mol@LB@Unfolding Energy - mRNA 2.69728 kcal/mol@LB@Unfolding Energy - sRNA 3.25117 kcal/mol@LB@@LB@Position - mRNA 223 -- 236@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 131 |
0.005571 |
0.1429 |
b3102 |
yqjG |
-9.67 |
0.191738 |
57 -- 77 |
24 -- 46 |
putative S-transferase |
|
_____________56_______________________78\n_____________|________________________|\n5'-GCA...UUUCU__C__A______CU__________AUUAC...GGC-3'\n______________GG_GG_UUCCUG_____GCUGGCA\n______________||_||_||||||_____|||:|||\n______________CC_CC_AAGGAC_____CGAUCGU\n3'-UUU...UUCCU__A_________CAUGU_______AAAAU...UCG-5'\n_____________|________________________|\n_____________47_______________________23\n |
71 -- 77 |
24 -- 30 |
-24.338 kcal/mol |
10.1138 kcal/mol |
4.55813 kcal/mol |
56 78@LB@ | |@LB@5'-GCA...UUUCU C A CU AUUAC...GGC-3'@LB@ GG GG UUCCUG GCUGGCA@LB@ || || |||||| |||:|||@LB@ CC CC AAGGAC CGAUCGU@LB@3'-UUU...UUCCU A CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -24.338 kcal/mol@LB@Unfolding Energy - mRNA 10.1138 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 57 -- 77@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 38 |
0.0007298 |
0.06455 |
b3196 |
yrbG |
-13.22 |
0.033821 |
90 -- 115 |
1 -- 31 |
putative calcium/sodium:proton antiporter |
|
_____________89______________________________116\n_____________|_______________________________|\n5'-UUC...GCGAA___________________UUAC________CGCAU...UUG-3'\n______________AGCUGGCAUUU_____GUU____UUUUUAGC\n______________||||:||||||_____|||____||||:|||\n______________UCGAUCGUAAA_____CAA____AAAAGUCG\n3'-UUU...CCAUG___________AUACC___UACA________-5'\n_____________|______________________________|\n_____________32_____________________________1\n |
109 -- 115 |
1 -- 7 |
-21.7779 kcal/mol |
7.06678 kcal/mol |
1.48722 kcal/mol |
89 116@LB@ | |@LB@5'-UUC...GCGAA UUAC CGCAU...UUG-3'@LB@ AGCUGGCAUUU GUU UUUUUAGC@LB@ ||||:|||||| ||| ||||:|||@LB@ UCGAUCGUAAA CAA AAAAGUCG@LB@3'-UUU...CCAUG AUACC UACA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -21.7779 kcal/mol@LB@Unfolding Energy - mRNA 7.06678 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 90 -- 115@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 153 |
0.00769 |
0.1686 |
b3292 |
zntR |
-12.84 |
0.042049 |
212 -- 231 |
16 -- 37 |
zntA gene transcriptional activator |
|
_____________211____________________232\n_____________|______________________|\n5'-UGA...CGCAU______________AAA_____CGGAA...CUG-3'\n______________UGGUG_AGCUGGCA____AUGG\n______________||||:_||||:|||____||||\n______________ACCAU_UCGAUCGU____UACC\n3'-UUU...CAAGG_____G________AAAA____CAAUA...UCG-5'\n_____________|______________________|\n_____________38_____________________15\n |
218 -- 224 |
24 -- 30 |
-20.2277 kcal/mol |
4.73271 kcal/mol |
2.65753 kcal/mol |
211 232@LB@ | |@LB@5'-UGA...CGCAU AAA CGGAA...CUG-3'@LB@ UGGUG AGCUGGCA AUGG@LB@ ||||: ||||:||| ||||@LB@ ACCAU UCGAUCGU UACC@LB@3'-UUU...CAAGG G AAAA CAAUA...UCG-5'@LB@ | |@LB@ 38 15@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -20.2277 kcal/mol@LB@Unfolding Energy - mRNA 4.73271 kcal/mol@LB@Unfolding Energy - sRNA 2.65753 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 16 -- 37@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 24 -- 30@LB@ |
