69 |
0.01301 |
0.5385 |
b0174 |
ispU |
-11.35 |
0.061456 |
97 -- 106 |
71 -- 80 |
undecaprenyl pyrophosphate synthase |
|
_____________96_________107\n_____________|__________|\n5'-CGU...AAGUA__________UAAGG...AAA-3'\n______________GUUGGCUUUA\n______________||||||||||\n______________CAACCGAAAU\n3'-CGC...AAGUG__________CAAUA...AAG-5'\n_____________|__________|\n_____________81_________70\n |
100 -- 106 |
71 -- 77 |
-14.3232 kcal/mol |
2.73321 kcal/mol |
0.236872 kcal/mol |
96 107@LB@ | |@LB@5'-CGU...AAGUA UAAGG...AAA-3'@LB@ GUUGGCUUUA@LB@ ||||||||||@LB@ CAACCGAAAU@LB@3'-CGC...AAGUG CAAUA...AAG-5'@LB@ | |@LB@ 81 70@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -14.3232 kcal/mol@LB@Unfolding Energy - mRNA 2.73321 kcal/mol@LB@Unfolding Energy - sRNA 0.236872 kcal/mol@LB@@LB@Position - mRNA 97 -- 106@LB@Position - sRNA 71 -- 80@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 71 -- 77@LB@ |
70 |
0.01301 |
0.5385 |
b1424 |
opgD |
-12.13 |
0.044753 |
222 -- 240 |
70 -- 90 |
OPG biosynthetic periplasmic protein |
|
_____________221___________________241\n_____________|_____________________|\n5'-AAU...UUAUU_________A_______A___CCGCC...CAG-3'\n______________AAAGGUUCA___UGGCU_UGG\n______________|||:|||||___|||||_|:|\n______________UUUUCAAGU___ACCGA_AUC\n3'-CGC...AGGCG_________GCA_____A___AAUAA...AAG-5'\n_____________|_____________________|\n_____________91____________________69\n |
224 -- 230 |
82 -- 88 |
-16.4191 kcal/mol |
3.71348 kcal/mol |
0.572228 kcal/mol |
221 241@LB@ | |@LB@5'-AAU...UUAUU A A CCGCC...CAG-3'@LB@ AAAGGUUCA UGGCU UGG@LB@ |||:||||| ||||| |:|@LB@ UUUUCAAGU ACCGA AUC@LB@3'-CGC...AGGCG GCA A AAUAA...AAG-5'@LB@ | |@LB@ 91 69@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -16.4191 kcal/mol@LB@Unfolding Energy - mRNA 3.71348 kcal/mol@LB@Unfolding Energy - sRNA 0.572228 kcal/mol@LB@@LB@Position - mRNA 222 -- 240@LB@Position - sRNA 70 -- 90@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 82 -- 88@LB@ |
71 |
0.01305 |
0.5385 |
b3843 |
ubiD |
-10.23 |
0.096580 |
123 -- 132 |
80 -- 89 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________122________133\n_____________|__________|\n5'-CGC...CCGUC__________CUAAU...UGG-3'\n______________AGAGUUCACG\n______________|:||||||||\n______________UUUCAAGUGC\n3'-CGC...GGCGU__________AACCG...AAG-5'\n_____________|__________|\n_____________90_________79\n |
126 -- 132 |
80 -- 86 |
-13.04 kcal/mol |
2.30553 kcal/mol |
0.506316 kcal/mol |
122 133@LB@ | |@LB@5'-CGC...CCGUC CUAAU...UGG-3'@LB@ AGAGUUCACG@LB@ |:||||||||@LB@ UUUCAAGUGC@LB@3'-CGC...GGCGU AACCG...AAG-5'@LB@ | |@LB@ 90 79@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -13.04 kcal/mol@LB@Unfolding Energy - mRNA 2.30553 kcal/mol@LB@Unfolding Energy - sRNA 0.506316 kcal/mol@LB@@LB@Position - mRNA 123 -- 132@LB@Position - sRNA 80 -- 89@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 80 -- 86@LB@ |
72 |
0.0135 |
0.5385 |
b1117 |
lolD |
-8.66 |
0.177865 |
184 -- 202 |
66 -- 83 |
outer membrane-specific lipoprotein transporter subunit |
|
_____________183_________________203\n_____________|___________________|\n5'-GCU...CAACC___UGA_______C_____GAAUA...GCG-3'\n______________CGC___GGCUUUA_GUUAU\n______________|:|___|||||||_|||||\n______________GUG___CCGAAAU_CAAUA\n3'-CGC...UUCAA___CAA_____________AGCUC...AAG-5'\n_____________|___________________|\n_____________84__________________65\n |
190 -- 196 |
71 -- 77 |
-15.2298 kcal/mol |
6.00943 kcal/mol |
0.556032 kcal/mol |
183 203@LB@ | |@LB@5'-GCU...CAACC UGA C GAAUA...GCG-3'@LB@ CGC GGCUUUA GUUAU@LB@ |:| ||||||| |||||@LB@ GUG CCGAAAU CAAUA@LB@3'-CGC...UUCAA CAA AGCUC...AAG-5'@LB@ | |@LB@ 84 65@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -15.2298 kcal/mol@LB@Unfolding Energy - mRNA 6.00943 kcal/mol@LB@Unfolding Energy - sRNA 0.556032 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 66 -- 83@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 71 -- 77@LB@ |
73 |
0.0135 |
0.5385 |
b3362 |
yhfG |
-12.23 |
0.043008 |
184 -- 212 |
50 -- 86 |
putative antitoxin for Fic |
|
_____________183___________________________________213\n_____________|_____________________________________|\n5'-GAU...GACAC_____G_GA___A__________A___GA________ACCGA...CUU-3'\n______________GUUCA_G__GGC_________UC_AGU__AGAAACUC\n______________|||||_|__|||_________||_|||__||||||||\n______________CAAGU_C__CCG_________AG_UCA__UCUUUGAG\n3'-CGC...GUUUU_____G_AA___AAAUCAAUA__C___AC________AGCUU...AAG-5'\n_____________|_____________________________________|\n_____________87____________________________________49\n |
206 -- 212 |
50 -- 56 |
-25.6976 kcal/mol |
9.05881 kcal/mol |
4.40785 kcal/mol |
183 213@LB@ | |@LB@5'-GAU...GACAC G GA A A GA ACCGA...CUU-3'@LB@ GUUCA G GGC UC AGU AGAAACUC@LB@ ||||| | ||| || ||| ||||||||@LB@ CAAGU C CCG AG UCA UCUUUGAG@LB@3'-CGC...GUUUU G AA AAAUCAAUA C AC AGCUU...AAG-5'@LB@ | |@LB@ 87 49@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -25.6976 kcal/mol@LB@Unfolding Energy - mRNA 9.05881 kcal/mol@LB@Unfolding Energy - sRNA 4.40785 kcal/mol@LB@@LB@Position - mRNA 184 -- 212@LB@Position - sRNA 50 -- 86@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 50 -- 56@LB@ |
74 |
0.01362 |
0.5385 |
b0946 |
zapC |
-12.02 |
0.046851 |
175 -- 197 |
15 -- 35 |
FtsZ stabilizer |
|
_____________174_____________________198\n_____________|_______________________|\n5'-AUU...GCUGC_______U_____AG________CAGAU...GUU-3'\n______________GGUUUUA_AGGGU__GGGAGAGG\n______________|::||:|_|||||__:::|||||\n______________CUGAAGU_UCCCA__UUUUCUCC\n3'-CGC...CGUCA_____________A_________ACGGC...AAG-5'\n_____________|_______________________|\n_____________36______________________14\n |
191 -- 197 |
15 -- 21 |
-19.3355 kcal/mol |
3.98393 kcal/mol |
3.33058 kcal/mol |
174 198@LB@ | |@LB@5'-AUU...GCUGC U AG CAGAU...GUU-3'@LB@ GGUUUUA AGGGU GGGAGAGG@LB@ |::||:| ||||| :::|||||@LB@ CUGAAGU UCCCA UUUUCUCC@LB@3'-CGC...CGUCA A ACGGC...AAG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -19.3355 kcal/mol@LB@Unfolding Energy - mRNA 3.98393 kcal/mol@LB@Unfolding Energy - sRNA 3.33058 kcal/mol@LB@@LB@Position - mRNA 175 -- 197@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 15 -- 21@LB@ |
75 |
0.01364 |
0.5385 |
b0107 |
hofB |
-15.68 |
0.010425 |
272 -- 289 |
69 -- 87 |
T2SE secretion family protein; P-loop ATPase superfamily protein |
|
_____________271_________________290\n_____________|___________________|\n5'-CCA...GAGGU_____________GG____CGAUG...CUU-3'\n______________GGUUCAUGUUG_C__UAGU\n______________:|||||:||||_|__||||\n______________UCAAGUGCAAC_G__AUCA\n3'-CGC...CGUUU___________C_AA____AUAAG...AAG-5'\n_____________|___________________|\n_____________88__________________68\n |
276 -- 282 |
77 -- 83 |
-18.3354 kcal/mol |
2.08484 kcal/mol |
0.569189 kcal/mol |
271 290@LB@ | |@LB@5'-CCA...GAGGU GG CGAUG...CUU-3'@LB@ GGUUCAUGUUG C UAGU@LB@ :|||||:|||| | ||||@LB@ UCAAGUGCAAC G AUCA@LB@3'-CGC...CGUUU C AA AUAAG...AAG-5'@LB@ | |@LB@ 88 68@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -18.3354 kcal/mol@LB@Unfolding Energy - mRNA 2.08484 kcal/mol@LB@Unfolding Energy - sRNA 0.569189 kcal/mol@LB@@LB@Position - mRNA 272 -- 289@LB@Position - sRNA 69 -- 87@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 77 -- 83@LB@ |
76 |
0.01392 |
0.5385 |
b0066 |
thiQ |
-9.74 |
0.117374 |
220 -- 232 |
71 -- 84 |
thiamine/thiamine pyrophosphate ABC transporter ATPase |
|
_____________219____________233\n_____________|______________|\n5'-GCU...UGAUA____C_________CCACC...CAA-3'\n______________UCAC__UGGCUUUA\n______________||||__||||||||\n______________AGUG__ACCGAAAU\n3'-CGC...UUUCA____CA________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
226 -- 232 |
71 -- 77 |
-13.9563 kcal/mol |
3.66363 kcal/mol |
0.5567 kcal/mol |
219 233@LB@ | |@LB@5'-GCU...UGAUA C CCACC...CAA-3'@LB@ UCAC UGGCUUUA@LB@ |||| ||||||||@LB@ AGUG ACCGAAAU@LB@3'-CGC...UUUCA CA CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.9563 kcal/mol@LB@Unfolding Energy - mRNA 3.66363 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 220 -- 232@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 71 -- 77@LB@ |
77 |
0.01396 |
0.5385 |
b3644 |
yicC |
-11.79 |
0.051421 |
238 -- 254 |
15 -- 31 |
UPF0701 family protein |
|
_____________237_______________255\n_____________|_________________|\n5'-UCU...UGAAA________GAAU_____AGCGC...AAA-3'\n______________UCAAGGGU____GGGGG\n______________||||||||____:|:||\n______________AGUUCCCA____UCUCC\n3'-CGC...ACUGA________AUUU_____ACGGC...AAG-5'\n_____________|_________________|\n_____________32________________14\n |
239 -- 245 |
24 -- 30 |
-20.4957 kcal/mol |
5.4171 kcal/mol |
3.28624 kcal/mol |
237 255@LB@ | |@LB@5'-UCU...UGAAA GAAU AGCGC...AAA-3'@LB@ UCAAGGGU GGGGG@LB@ |||||||| :|:||@LB@ AGUUCCCA UCUCC@LB@3'-CGC...ACUGA AUUU ACGGC...AAG-5'@LB@ | |@LB@ 32 14@LB@@LB@@LB@Energy -11.79 kcal/mol@LB@Hybridization Energy -20.4957 kcal/mol@LB@Unfolding Energy - mRNA 5.4171 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 238 -- 254@LB@Position - sRNA 15 -- 31@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 24 -- 30@LB@ |
78 |
0.01399 |
0.5385 |
b3526 |
kdgK |
-7.99 |
0.228654 |
189 -- 197 |
80 -- 88 |
2-dehydro-3-deoxygluconokinase |
|
_____________188_______198\n_____________|_________|\n5'-CCC...AGAUC_________ACUAU...CUU-3'\n______________AGGUUCACG\n______________|:|||||||\n______________UUCAAGUGC\n3'-CGC...GCGUU_________AACCG...AAG-5'\n_____________|_________|\n_____________89________79\n |
191 -- 197 |
80 -- 86 |
-11.7911 kcal/mol |
3.29177 kcal/mol |
0.504555 kcal/mol |
188 198@LB@ | |@LB@5'-CCC...AGAUC ACUAU...CUU-3'@LB@ AGGUUCACG@LB@ |:|||||||@LB@ UUCAAGUGC@LB@3'-CGC...GCGUU AACCG...AAG-5'@LB@ | |@LB@ 89 79@LB@@LB@@LB@Energy -7.99 kcal/mol@LB@Hybridization Energy -11.7911 kcal/mol@LB@Unfolding Energy - mRNA 3.29177 kcal/mol@LB@Unfolding Energy - sRNA 0.504555 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 80 -- 88@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 80 -- 86@LB@ |