181 |
0.03179 |
0.5559 |
b3240 |
aaeB |
-9.50 |
0.128739 |
275 -- 287 |
72 -- 86 |
p-hydroxybenzoic acid efflux system component |
|
_____________274_____________288\n_____________|_______________|\n5'-ACU...GCGCU_______________CACUU...UGG-3'\n______________GUUU__GUUGGCUUU\n______________|||:__|||||||||\n______________CAAG__CAACCGAAA\n3'-CGC...GUUUU____UG_________UCAAU...AAG-5'\n_____________|_______________|\n_____________87______________71\n |
281 -- 287 |
72 -- 78 |
-13.8127 kcal/mol |
3.79774 kcal/mol |
0.514266 kcal/mol |
274 288@LB@ | |@LB@5'-ACU...GCGCU CACUU...UGG-3'@LB@ GUUU GUUGGCUUU@LB@ |||: |||||||||@LB@ CAAG CAACCGAAA@LB@3'-CGC...GUUUU UG UCAAU...AAG-5'@LB@ | |@LB@ 87 71@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -13.8127 kcal/mol@LB@Unfolding Energy - mRNA 3.79774 kcal/mol@LB@Unfolding Energy - sRNA 0.514266 kcal/mol@LB@@LB@Position - mRNA 275 -- 287@LB@Position - sRNA 72 -- 86@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 72 -- 78@LB@ |
182 |
0.03197 |
0.5559 |
b0212 |
gloB |
-7.96 |
0.231442 |
50 -- 71 |
56 -- 75 |
hydroxyacylglutathione hydrolase |
|
_____________49_____________________72\n_____________|______________________|\n5'-UUG...AUACA_______GAACCA_________CUGGC...AGC-3'\n______________UUUUAGU______CGGGUUGAG\n______________:||||||______||:||||||\n______________GAAAUCA______GCUCAACUC\n3'-CGC...CAACC_______AUAA___________UUUGA...AAG-5'\n_____________|______________________|\n_____________76_____________________55\n |
65 -- 71 |
56 -- 62 |
-16.3693 kcal/mol |
6.6953 kcal/mol |
1.71204 kcal/mol |
49 72@LB@ | |@LB@5'-UUG...AUACA GAACCA CUGGC...AGC-3'@LB@ UUUUAGU CGGGUUGAG@LB@ :|||||| ||:||||||@LB@ GAAAUCA GCUCAACUC@LB@3'-CGC...CAACC AUAA UUUGA...AAG-5'@LB@ | |@LB@ 76 55@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -16.3693 kcal/mol@LB@Unfolding Energy - mRNA 6.6953 kcal/mol@LB@Unfolding Energy - sRNA 1.71204 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 56 -- 75@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 56 -- 62@LB@ |
183 |
0.03203 |
0.5559 |
b4484 |
cpxP |
-9.38 |
0.135070 |
107 -- 120 |
71 -- 85 |
inhibitor of the cpx response; periplasmic adaptor protein |
|
_____________106_____________121\n_____________|_______________|\n5'-UAA...AUGAC_______________CACCC...GUG-3'\n______________UUUACGUUG_UUUUA\n______________||:||||||_:||||\n______________AAGUGCAAC_GAAAU\n3'-CGC...UUUUC_________C_____CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
109 -- 115 |
77 -- 83 |
-11.4265 kcal/mol |
1.48788 kcal/mol |
0.560731 kcal/mol |
106 121@LB@ | |@LB@5'-UAA...AUGAC CACCC...GUG-3'@LB@ UUUACGUUG UUUUA@LB@ ||:|||||| :||||@LB@ AAGUGCAAC GAAAU@LB@3'-CGC...UUUUC C CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -11.4265 kcal/mol@LB@Unfolding Energy - mRNA 1.48788 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 107 -- 120@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 77 -- 83@LB@ |
184 |
0.03259 |
0.5559 |
b0811 |
glnH |
-9.61 |
0.123139 |
215 -- 230 |
74 -- 90 |
glutamine transporter subunit |
|
_____________214________________231\n_____________|__________________|\n5'-AUC...GUAUU_______U__________GCACU...CCG-3'\n______________AAAAGUU_CAC__UGGCU\n______________|||||||_|||__|||||\n______________UUUUCAA_GUG__ACCGA\n3'-CGC...AGGCG___________CA_____AAUCA...AAG-5'\n_____________|__________________|\n_____________91_________________73\n |
215 -- 221 |
84 -- 90 |
-14.2101 kcal/mol |
4.07847 kcal/mol |
0.517587 kcal/mol |
214 231@LB@ | |@LB@5'-AUC...GUAUU U GCACU...CCG-3'@LB@ AAAAGUU CAC UGGCU@LB@ ||||||| ||| |||||@LB@ UUUUCAA GUG ACCGA@LB@3'-CGC...AGGCG CA AAUCA...AAG-5'@LB@ | |@LB@ 91 73@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -14.2101 kcal/mol@LB@Unfolding Energy - mRNA 4.07847 kcal/mol@LB@Unfolding Energy - sRNA 0.517587 kcal/mol@LB@@LB@Position - mRNA 215 -- 230@LB@Position - sRNA 74 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 84 -- 90@LB@ |
185 |
0.03283 |
0.5559 |
b1937 |
fliE |
-12.05 |
0.046361 |
209 -- 229 |
14 -- 35 |
flagellar basal-body component |
|
_____________208____________________230\n_____________|______________________|\n5'-CUG...UCAGC___A_______AUU________UAUCA...GUU-3'\n______________GAU__CAGGGG___GAAGGGGU\n______________||:__||:|||___:|||:|||\n______________CUG__GUUCCC___UUUCUCCA\n3'-CGC...CGUCA___AA______AAU________CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
223 -- 229 |
14 -- 20 |
-20.5154 kcal/mol |
5.13678 kcal/mol |
3.33183 kcal/mol |
208 230@LB@ | |@LB@5'-CUG...UCAGC A AUU UAUCA...GUU-3'@LB@ GAU CAGGGG GAAGGGGU@LB@ ||: ||:||| :|||:|||@LB@ CUG GUUCCC UUUCUCCA@LB@3'-CGC...CGUCA AA AAU CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -20.5154 kcal/mol@LB@Unfolding Energy - mRNA 5.13678 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 209 -- 229@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 14 -- 20@LB@ |
186 |
0.03285 |
0.5559 |
b1003 |
yccJ |
-7.53 |
0.270746 |
41 -- 54 |
75 -- 88 |
uncharacterized protein |
|
_____________40_____________55\n_____________|______________|\n5'-CCU...UUCAC_________GC___ACGCC...GGU-3'\n______________AGGUUCGCG__GGU\n______________|:||||:||__||:\n______________UUCAAGUGC__CCG\n3'-CGC...GCGUU_________AA___AAAUC...AAG-5'\n_____________|______________|\n_____________89_____________74\n |
43 -- 49 |
80 -- 86 |
-16.6206 kcal/mol |
8.57413 kcal/mol |
0.515884 kcal/mol |
40 55@LB@ | |@LB@5'-CCU...UUCAC GC ACGCC...GGU-3'@LB@ AGGUUCGCG GGU@LB@ |:||||:|| ||:@LB@ UUCAAGUGC CCG@LB@3'-CGC...GCGUU AA AAAUC...AAG-5'@LB@ | |@LB@ 89 74@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -16.6206 kcal/mol@LB@Unfolding Energy - mRNA 8.57413 kcal/mol@LB@Unfolding Energy - sRNA 0.515884 kcal/mol@LB@@LB@Position - mRNA 41 -- 54@LB@Position - sRNA 75 -- 88@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 80 -- 86@LB@ |
187 |
0.03332 |
0.5559 |
b2019 |
hisG |
-10.76 |
0.077976 |
170 -- 191 |
15 -- 34 |
ATP phosphoribosyltransferase |
|
_____________169____________________192\n_____________|______________________|\n5'-UUU...AUAAC_G_____ACA____U_______AAUAA...AUC-3'\n______________G_UUCAG___GGUU_AAAGAGG\n______________:_||||:___||||_|||||||\n______________U_AAGUU___CCAA_UUUCUCC\n3'-CGC...GUCAC_G_____C______U_______ACGGC...AAG-5'\n_____________|______________________|\n_____________35_____________________14\n |
185 -- 191 |
15 -- 21 |
-17.0816 kcal/mol |
2.9882 kcal/mol |
3.33044 kcal/mol |
169 192@LB@ | |@LB@5'-UUU...AUAAC G ACA U AAUAA...AUC-3'@LB@ G UUCAG GGUU AAAGAGG@LB@ : ||||: |||| |||||||@LB@ U AAGUU CCAA UUUCUCC@LB@3'-CGC...GUCAC G C U ACGGC...AAG-5'@LB@ | |@LB@ 35 14@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -17.0816 kcal/mol@LB@Unfolding Energy - mRNA 2.9882 kcal/mol@LB@Unfolding Energy - sRNA 3.33044 kcal/mol@LB@@LB@Position - mRNA 170 -- 191@LB@Position - sRNA 15 -- 34@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 15 -- 21@LB@ |
188 |
0.03339 |
0.5559 |
b3232 |
zapE |
-6.91 |
0.336884 |
267 -- 282 |
15 -- 35 |
divisome ATPase |
|
_____________266____________________283\n_____________|______________________|\n5'-AGG...CCGAC___G__________________CCGUC...AAA-3'\n______________GAC_UUCA______AAAAGAGG\n______________|||_||||______||||||||\n______________CUG_AAGU______UUUUCUCC\n3'-CGC...CGUCA________UCCCAA________ACGGC...AAG-5'\n_____________|______________________|\n_____________36_____________________14\n |
276 -- 282 |
15 -- 21 |
-13.3674 kcal/mol |
3.12995 kcal/mol |
3.33058 kcal/mol |
266 283@LB@ | |@LB@5'-AGG...CCGAC G CCGUC...AAA-3'@LB@ GAC UUCA AAAAGAGG@LB@ ||| |||| ||||||||@LB@ CUG AAGU UUUUCUCC@LB@3'-CGC...CGUCA UCCCAA ACGGC...AAG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -6.91 kcal/mol@LB@Hybridization Energy -13.3674 kcal/mol@LB@Unfolding Energy - mRNA 3.12995 kcal/mol@LB@Unfolding Energy - sRNA 3.33058 kcal/mol@LB@@LB@Position - mRNA 267 -- 282@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 15 -- 21@LB@ |
189 |
0.03342 |
0.5559 |
b2172 |
yeiQ |
-17.65 |
0.004645 |
282 -- 298 |
70 -- 86 |
putative NAD-dependent D-mannonate oxidoreductase |
|
_____________281_______________299\n_____________|_________________|\n5'-GAU...GUAUC______U__________AG-3'\n______________GUUCAU_UUGGCUUUGG\n______________|||||:_||||||||:|\n______________CAAGUG_AACCGAAAUC\n3'-CGC...GUUUU______C__________AAUAA...AAG-5'\n_____________|_________________|\n_____________87________________69\n |
292 -- 298 |
70 -- 76 |
-21.6632 kcal/mol |
3.44897 kcal/mol |
0.568254 kcal/mol |
281 299@LB@ | |@LB@5'-GAU...GUAUC U AG-3'@LB@ GUUCAU UUGGCUUUGG@LB@ |||||: ||||||||:|@LB@ CAAGUG AACCGAAAUC@LB@3'-CGC...GUUUU C AAUAA...AAG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -17.65 kcal/mol@LB@Hybridization Energy -21.6632 kcal/mol@LB@Unfolding Energy - mRNA 3.44897 kcal/mol@LB@Unfolding Energy - sRNA 0.568254 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 70 -- 76@LB@ |
190 |
0.03345 |
0.5559 |
b4090 |
rpiB |
-6.75 |
0.355761 |
259 -- 286 |
57 -- 78 |
ribose 5-phosphate isomerase B/allose 6-phosphate isomerase |
|
_____________258__________________________287\n_____________|____________________________|\n5'-AAC...AAUAG____ACA________AGCG___C_____AGUGA...AAG-3'\n______________UGGC___UUUAGUUG____UGG_GUUGA\n______________||||___|||||||:____:|:_|||||\n______________ACCG___AAAUCAAU____GCU_CAACU\n3'-CGC...GUGCA_______________AA___________CUUUG...AAG-5'\n_____________|____________________________|\n_____________79___________________________56\n |
267 -- 273 |
67 -- 73 |
-15.2709 kcal/mol |
7.30632 kcal/mol |
1.21856 kcal/mol |
258 287@LB@ | |@LB@5'-AAC...AAUAG ACA AGCG C AGUGA...AAG-3'@LB@ UGGC UUUAGUUG UGG GUUGA@LB@ |||| |||||||: :|: |||||@LB@ ACCG AAAUCAAU GCU CAACU@LB@3'-CGC...GUGCA AA CUUUG...AAG-5'@LB@ | |@LB@ 79 56@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -15.2709 kcal/mol@LB@Unfolding Energy - mRNA 7.30632 kcal/mol@LB@Unfolding Energy - sRNA 1.21856 kcal/mol@LB@@LB@Position - mRNA 259 -- 286@LB@Position - sRNA 57 -- 78@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 67 -- 73@LB@ |