| 160 |
0.02795 |
0.5559 |
b1475 |
fdnH |
-7.98 |
0.230122 |
69 -- 80 |
24 -- 35 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________68___________81\n_____________|____________|\n5'-CGC...ACUGG____________GUCGC...UUA-3'\n______________GGCUUUGAGGGU\n______________|:|||::|||||\n______________CUGAAGUUCCCA\n3'-CGC...CGUCA____________AUUUU...AAG-5'\n_____________|____________|\n_____________36___________23\n |
74 -- 80 |
24 -- 30 |
-17.8377 kcal/mol |
6.53052 kcal/mol |
3.32971 kcal/mol |
68 81@LB@ | |@LB@5'-CGC...ACUGG GUCGC...UUA-3'@LB@ GGCUUUGAGGGU@LB@ |:|||::|||||@LB@ CUGAAGUUCCCA@LB@3'-CGC...CGUCA AUUUU...AAG-5'@LB@ | |@LB@ 36 23@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -17.8377 kcal/mol@LB@Unfolding Energy - mRNA 6.53052 kcal/mol@LB@Unfolding Energy - sRNA 3.32971 kcal/mol@LB@@LB@Position - mRNA 69 -- 80@LB@Position - sRNA 24 -- 35@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 161 |
0.02817 |
0.5559 |
b0852 |
rimK |
-8.21 |
0.210781 |
44 -- 79 |
81 -- 107 |
ribosomal protein S6 modification protein |
|
_____________43___________________________________80\n_____________|____________________________________|\n5'-AAC...CGCCG____A_______CGAUCAU______C___CAA____UAAAG...AUC-3'\n______________GGAU_CCUGGAG_______AUCCGC_GAA___UCAU\n______________||||_|||||||_______||||||_:||___|||:\n______________CCUA_GGACCUC_______UAGGCG_UUU___AGUG\n_________3'-CG_________________________U___CA_____CAACC...AAG-5'\n_____________|____________________________________|\n_____________108__________________________________80\n |
49 -- 55 |
97 -- 103 |
-27.5385 kcal/mol |
7.46513 kcal/mol |
11.8593 kcal/mol |
43 80@LB@ | |@LB@5'-AAC...CGCCG A CGAUCAU C CAA UAAAG...AUC-3'@LB@ GGAU CCUGGAG AUCCGC GAA UCAU@LB@ |||| ||||||| |||||| :|| |||:@LB@ CCUA GGACCUC UAGGCG UUU AGUG@LB@ 3'-CG U CA CAACC...AAG-5'@LB@ | |@LB@ 108 80@LB@@LB@@LB@Energy -8.21 kcal/mol@LB@Hybridization Energy -27.5385 kcal/mol@LB@Unfolding Energy - mRNA 7.46513 kcal/mol@LB@Unfolding Energy - sRNA 11.8593 kcal/mol@LB@@LB@Position - mRNA 44 -- 79@LB@Position - sRNA 81 -- 107@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 97 -- 103@LB@ |
| 163 |
0.02879 |
0.5559 |
b4244 |
pyrI |
-5.82 |
0.477897 |
276 -- 293 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________275________________294\n_____________|__________________|\n5'-UUC...AGAUC_______AGCUG______CUGUUCA-3'\n______________GGUUUUA_____UUGAGU\n______________||:||||_____|:||||\n______________CCGAAAU_____AGCUCA\n3'-CGC...UGCAA_______CAAUA______ACUCU...AAG-5'\n_____________|__________________|\n_____________78_________________59\n |
276 -- 282 |
71 -- 77 |
-12.7499 kcal/mol |
6.13118 kcal/mol |
0.796465 kcal/mol |
275 294@LB@ | |@LB@5'-UUC...AGAUC AGCUG CUGUUCA-3'@LB@ GGUUUUA UUGAGU@LB@ ||:|||| |:||||@LB@ CCGAAAU AGCUCA@LB@3'-CGC...UGCAA CAAUA ACUCU...AAG-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -5.82 kcal/mol@LB@Hybridization Energy -12.7499 kcal/mol@LB@Unfolding Energy - mRNA 6.13118 kcal/mol@LB@Unfolding Energy - sRNA 0.796465 kcal/mol@LB@@LB@Position - mRNA 276 -- 293@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 164 |
0.02889 |
0.5559 |
b1512 |
lsrR |
-7.59 |
0.264791 |
265 -- 277 |
71 -- 84 |
lsr operon transcriptional repressor |
|
_____________264____________278\n_____________|______________|\n5'-GCU...GCGGA______________CUAUC...AGA-3'\n______________UCGCG_UGGUUUUA\n______________||:||_|||:||||\n______________AGUGC_ACCGAAAU\n3'-CGC...UUUCA_____A________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
271 -- 277 |
71 -- 77 |
-14.8882 kcal/mol |
6.73904 kcal/mol |
0.5567 kcal/mol |
264 278@LB@ | |@LB@5'-GCU...GCGGA CUAUC...AGA-3'@LB@ UCGCG UGGUUUUA@LB@ ||:|| |||:||||@LB@ AGUGC ACCGAAAU@LB@3'-CGC...UUUCA A CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -7.59 kcal/mol@LB@Hybridization Energy -14.8882 kcal/mol@LB@Unfolding Energy - mRNA 6.73904 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 265 -- 277@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 165 |
0.02909 |
0.5559 |
b3283 |
yrdD |
-9.69 |
0.119373 |
265 -- 285 |
52 -- 72 |
ssDNA-binding protein function unknown |
|
_____________264___________________286\n_____________|_____________________|\n5'-AAC...UGAAC___________UCC_______ACGGU...UUG-3'\n______________UGGUUAUUCGA___GGGAAAC\n______________|:|||||||||___|:|||||\n______________AUCAAUAAGCU___CUCUUUG\n3'-CGC...CCGAA___________CAA_______AGAGC...AAG-5'\n_____________|_____________________|\n_____________73____________________51\n |
279 -- 285 |
52 -- 58 |
-20.8466 kcal/mol |
6.85358 kcal/mol |
4.29991 kcal/mol |
264 286@LB@ | |@LB@5'-AAC...UGAAC UCC ACGGU...UUG-3'@LB@ UGGUUAUUCGA GGGAAAC@LB@ |:||||||||| |:|||||@LB@ AUCAAUAAGCU CUCUUUG@LB@3'-CGC...CCGAA CAA AGAGC...AAG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -20.8466 kcal/mol@LB@Unfolding Energy - mRNA 6.85358 kcal/mol@LB@Unfolding Energy - sRNA 4.29991 kcal/mol@LB@@LB@Position - mRNA 265 -- 285@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 166 |
0.02918 |
0.5559 |
b3518 |
yhjA |
-9.21 |
0.144312 |
113 -- 127 |
71 -- 85 |
putative cytochrome C peroxidase |
|
_____________112_____________128\n_____________|_______________|\n5'-CCG...UGUUU______A________UCUCG...GCA-3'\n______________UUUAUG_UGGCUUUG\n______________||:|:|_|||||||:\n______________AAGUGC_ACCGAAAU\n3'-CGC...UUUUC______A________CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
121 -- 127 |
71 -- 77 |
-14.7899 kcal/mol |
5.0213 kcal/mol |
0.560731 kcal/mol |
112 128@LB@ | |@LB@5'-CCG...UGUUU A UCUCG...GCA-3'@LB@ UUUAUG UGGCUUUG@LB@ ||:|:| |||||||:@LB@ AAGUGC ACCGAAAU@LB@3'-CGC...UUUUC A CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.21 kcal/mol@LB@Hybridization Energy -14.7899 kcal/mol@LB@Unfolding Energy - mRNA 5.0213 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 113 -- 127@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 167 |
0.02971 |
0.5559 |
b3062 |
ttdB |
-9.65 |
0.121251 |
224 -- 260 |
75 -- 106 |
L-tartrate dehydratase beta subunit |
|
_____________223___________________________________261\n_____________|_____________________________________|\n5'-GGA...ACCCC____AAAG___A____________UA_______C___GAUGU...GCG-3'\n______________GAUC____CUG_AGAUCUGCAAGA__UUCGCGU_GGC\n______________||||____|||_|||||:||||:|__|||:|||_|||\n______________CUAG____GAC_UCUAGGCGUUUU__AAGUGCA_CCG\n________3'-CGC___________C____________C________A___AAAUC...AAG-5'\n_____________|_____________________________________|\n_____________107___________________________________74\n |
250 -- 256 |
79 -- 85 |
-36.8095 kcal/mol |
15.2774 kcal/mol |
11.8787 kcal/mol |
223 261@LB@ | |@LB@5'-GGA...ACCCC AAAG A UA C GAUGU...GCG-3'@LB@ GAUC CUG AGAUCUGCAAGA UUCGCGU GGC@LB@ |||| ||| |||||:||||:| |||:||| |||@LB@ CUAG GAC UCUAGGCGUUUU AAGUGCA CCG@LB@ 3'-CGC C C A AAAUC...AAG-5'@LB@ | |@LB@ 107 74@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -36.8095 kcal/mol@LB@Unfolding Energy - mRNA 15.2774 kcal/mol@LB@Unfolding Energy - sRNA 11.8787 kcal/mol@LB@@LB@Position - mRNA 224 -- 260@LB@Position - sRNA 75 -- 106@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 168 |
0.0298 |
0.5559 |
b0161 |
degP |
-8.84 |
0.166335 |
239 -- 253 |
75 -- 88 |
serine endoprotease (protease Do) membrane-associated |
|
_____________238_____________254\n_____________|_______________|\n5'-AUU...GCUCU_______G_U_____GUUAU...CGA-3'\n______________GAGUUUA_G_UUGGC\n______________:||||:|_|_|||||\n______________UUCAAGU_C_AACCG\n3'-CGC...GCGUU_______G_______AAAUC...AAG-5'\n_____________|_______________|\n_____________89______________74\n |
239 -- 245 |
82 -- 88 |
-14.9204 kcal/mol |
5.56475 kcal/mol |
0.515884 kcal/mol |
238 254@LB@ | |@LB@5'-AUU...GCUCU G U GUUAU...CGA-3'@LB@ GAGUUUA G UUGGC@LB@ :||||:| | |||||@LB@ UUCAAGU C AACCG@LB@3'-CGC...GCGUU G AAAUC...AAG-5'@LB@ | |@LB@ 89 74@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -14.9204 kcal/mol@LB@Unfolding Energy - mRNA 5.56475 kcal/mol@LB@Unfolding Energy - sRNA 0.515884 kcal/mol@LB@@LB@Position - mRNA 239 -- 253@LB@Position - sRNA 75 -- 88@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 169 |
0.03038 |
0.5559 |
b2912 |
fau |
-9.38 |
0.135051 |
85 -- 98 |
22 -- 35 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________84_____________99\n_____________|______________|\n5'-GAA...ACCAA__G___________CAGCC...UGG-3'\n______________GG_UUCAAGGGUUA\n______________|:_|||||||||||\n______________CU_AAGUUCCCAAU\n3'-CGC...CGUCA__G___________UUUCU...AAG-5'\n_____________|______________|\n_____________36_____________21\n |
92 -- 98 |
22 -- 28 |
-18.6025 kcal/mol |
5.89438 kcal/mol |
3.32987 kcal/mol |
84 99@LB@ | |@LB@5'-GAA...ACCAA G CAGCC...UGG-3'@LB@ GG UUCAAGGGUUA@LB@ |: |||||||||||@LB@ CU AAGUUCCCAAU@LB@3'-CGC...CGUCA G UUUCU...AAG-5'@LB@ | |@LB@ 36 21@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -18.6025 kcal/mol@LB@Unfolding Energy - mRNA 5.89438 kcal/mol@LB@Unfolding Energy - sRNA 3.32987 kcal/mol@LB@@LB@Position - mRNA 85 -- 98@LB@Position - sRNA 22 -- 35@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 170 |
0.03041 |
0.5559 |
b1629 |
rsxC |
-10.04 |
0.103937 |
197 -- 215 |
64 -- 83 |
SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex |
|
_____________196__________________216\n_____________|____________________|\n5'-UCA...UGGAA___CAU_____A________UCUGC...CCC-3'\n______________CAC____GCUU_AGUUAUUC\n______________|||____||||_||||||||\n______________GUG____CGAA_UCAAUAAG\n3'-CGC...UUCAA___CAAC____A________CUCAA...AAG-5'\n_____________|____________________|\n_____________84___________________63\n |
209 -- 215 |
64 -- 70 |
-13.7112 kcal/mol |
3.10702 kcal/mol |
0.560651 kcal/mol |
196 216@LB@ | |@LB@5'-UCA...UGGAA CAU A UCUGC...CCC-3'@LB@ CAC GCUU AGUUAUUC@LB@ ||| |||| ||||||||@LB@ GUG CGAA UCAAUAAG@LB@3'-CGC...UUCAA CAAC A CUCAA...AAG-5'@LB@ | |@LB@ 84 63@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -13.7112 kcal/mol@LB@Unfolding Energy - mRNA 3.10702 kcal/mol@LB@Unfolding Energy - sRNA 0.560651 kcal/mol@LB@@LB@Position - mRNA 197 -- 215@LB@Position - sRNA 64 -- 83@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 64 -- 70@LB@ |
