49 |
0.01016 |
0.5385 |
b3354 |
yheU |
-13.31 |
0.027656 |
105 -- 118 |
71 -- 84 |
UPF0270 family protein |
|
_____________104____________119\n_____________|______________|\n5'-CUG...GGCGG______________UUGGC...GUA-3'\n______________UCAUGUUGGCUUUA\n______________|||:||||||||||\n______________AGUGCAACCGAAAU\n3'-CGC...UUUCA______________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
112 -- 118 |
71 -- 77 |
-20.4483 kcal/mol |
6.58199 kcal/mol |
0.5567 kcal/mol |
104 119@LB@ | |@LB@5'-CUG...GGCGG UUGGC...GUA-3'@LB@ UCAUGUUGGCUUUA@LB@ |||:||||||||||@LB@ AGUGCAACCGAAAU@LB@3'-CGC...UUUCA CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -20.4483 kcal/mol@LB@Unfolding Energy - mRNA 6.58199 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 71 -- 77@LB@ |
50 |
0.0104 |
0.5385 |
b0661 |
miaB |
-10.15 |
0.099644 |
35 -- 45 |
74 -- 85 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________34___________46\n_____________|____________|\n5'-CGC...GCAAU____________GAUUU...AAC-3'\n______________UUC_CGUUGGUU\n______________|||_||||||:|\n______________AAG_GCAACCGA\n3'-CGC...UUUUC___U________AAUCA...AAG-5'\n_____________|____________|\n_____________86___________73\n |
39 -- 45 |
74 -- 80 |
-13.4892 kcal/mol |
2.82751 kcal/mol |
0.512001 kcal/mol |
34 46@LB@ | |@LB@5'-CGC...GCAAU GAUUU...AAC-3'@LB@ UUC CGUUGGUU@LB@ ||| ||||||:|@LB@ AAG GCAACCGA@LB@3'-CGC...UUUUC U AAUCA...AAG-5'@LB@ | |@LB@ 86 73@LB@@LB@@LB@Energy -10.15 kcal/mol@LB@Hybridization Energy -13.4892 kcal/mol@LB@Unfolding Energy - mRNA 2.82751 kcal/mol@LB@Unfolding Energy - sRNA 0.512001 kcal/mol@LB@@LB@Position - mRNA 35 -- 45@LB@Position - sRNA 74 -- 85@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 74 -- 80@LB@ |
51 |
0.01052 |
0.5385 |
b0751 |
pnuC |
-11.84 |
0.050492 |
77 -- 89 |
77 -- 89 |
nicotinamide riboside transporter |
|
_____________76____________90\n_____________|_____________|\n5'-CGC...AUCAC_____________AUGAA...GGU-3'\n______________GAGGUUCAUGUUG\n______________:|:|||||:||||\n______________UUUCAAGUGCAAC\n3'-CGC...GGCGU_____________CGAAA...AAG-5'\n_____________|_____________|\n_____________90____________76\n |
83 -- 89 |
77 -- 83 |
-16.9239 kcal/mol |
4.57656 kcal/mol |
0.510111 kcal/mol |
76 90@LB@ | |@LB@5'-CGC...AUCAC AUGAA...GGU-3'@LB@ GAGGUUCAUGUUG@LB@ :|:|||||:||||@LB@ UUUCAAGUGCAAC@LB@3'-CGC...GGCGU CGAAA...AAG-5'@LB@ | |@LB@ 90 76@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -16.9239 kcal/mol@LB@Unfolding Energy - mRNA 4.57656 kcal/mol@LB@Unfolding Energy - sRNA 0.510111 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 77 -- 89@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 77 -- 83@LB@ |
52 |
0.01055 |
0.5385 |
b2963 |
mltC |
-16.80 |
0.006570 |
83 -- 101 |
12 -- 32 |
membrane-bound lytic murein transglycosylase C |
|
_____________82____________________102\n_____________|_____________________|\n5'-CAU...UCCUG_____________________AUAUC...AUA-3'\n______________UUCGAGGGU__AAAGAGGUGC\n______________|||:|||||__||||||||||\n______________AAGUUCCCA__UUUCUCCACG\n3'-CGC...CACUG_________AU__________GCGAG...AAG-5'\n_____________|_____________________|\n_____________33____________________11\n |
95 -- 101 |
12 -- 18 |
-28.8763 kcal/mol |
6.26663 kcal/mol |
5.80657 kcal/mol |
82 102@LB@ | |@LB@5'-CAU...UCCUG AUAUC...AUA-3'@LB@ UUCGAGGGU AAAGAGGUGC@LB@ |||:||||| ||||||||||@LB@ AAGUUCCCA UUUCUCCACG@LB@3'-CGC...CACUG AU GCGAG...AAG-5'@LB@ | |@LB@ 33 11@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -28.8763 kcal/mol@LB@Unfolding Energy - mRNA 6.26663 kcal/mol@LB@Unfolding Energy - sRNA 5.80657 kcal/mol@LB@@LB@Position - mRNA 83 -- 101@LB@Position - sRNA 12 -- 32@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 12 -- 18@LB@ |
53 |
0.01075 |
0.5385 |
b2215 |
ompC |
-12.88 |
0.032936 |
67 -- 90 |
57 -- 76 |
outer membrane porin protein C |
|
_____________66_______________________91\n_____________|________________________|\n5'-AUC...UAAAA________AUCA______U_____AUUAU...AUC-3'\n______________GUUUUAGU____UAUUCG_GUUGG\n______________|:||||||____||||||_||||:\n______________CGAAAUCA____AUAAGC_CAACU\n3'-CGC...GCAAC__________________U_____CUUUG...AAG-5'\n_____________|________________________|\n_____________77_______________________56\n |
68 -- 74 |
69 -- 75 |
-17.5321 kcal/mol |
3.43109 kcal/mol |
1.21756 kcal/mol |
66 91@LB@ | |@LB@5'-AUC...UAAAA AUCA U AUUAU...AUC-3'@LB@ GUUUUAGU UAUUCG GUUGG@LB@ |:|||||| |||||| ||||:@LB@ CGAAAUCA AUAAGC CAACU@LB@3'-CGC...GCAAC U CUUUG...AAG-5'@LB@ | |@LB@ 77 56@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -17.5321 kcal/mol@LB@Unfolding Energy - mRNA 3.43109 kcal/mol@LB@Unfolding Energy - sRNA 1.21756 kcal/mol@LB@@LB@Position - mRNA 67 -- 90@LB@Position - sRNA 57 -- 76@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 69 -- 75@LB@ |
54 |
0.01077 |
0.5385 |
b1820 |
yobD |
-10.70 |
0.079862 |
85 -- 97 |
73 -- 84 |
UPF0266 family inner membrane protein |
|
_____________84____________98\n_____________|_____________|\n5'-ACC...GUGGA___U_________CUUCG...CCC-3'\n______________UCA_CGUUGGCUU\n______________|||_|||||||||\n______________AGU_GCAACCGAA\n3'-CGC...UUUCA_____________AUCAA...AAG-5'\n_____________|_____________|\n_____________85____________72\n |
91 -- 97 |
73 -- 79 |
-16.3135 kcal/mol |
5.10116 kcal/mol |
0.508835 kcal/mol |
84 98@LB@ | |@LB@5'-ACC...GUGGA U CUUCG...CCC-3'@LB@ UCA CGUUGGCUU@LB@ ||| |||||||||@LB@ AGU GCAACCGAA@LB@3'-CGC...UUUCA AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -16.3135 kcal/mol@LB@Unfolding Energy - mRNA 5.10116 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 85 -- 97@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 73 -- 79@LB@ |
55 |
0.01095 |
0.5385 |
b1220 |
ychO |
-5.56 |
0.517016 |
132 -- 175 |
64 -- 91 |
putative invasin |
|
_____________131__________________________________________176\n_____________|____________________________________________|\n5'-UCA...UACGA________GCCAGUAAU____AUUCUUUAA____A_____U___AUUAU...CAA-3'\n______________CAAAAGUU_________CGUU_________GGCU_UGGUU_UUC\n______________||||||||_________||||_________||||_|:|||_|||\n______________GUUUUCAA_________GCAA_________CCGA_AUCAA_AAG\n3'-CGC...UAGGC________GU________________________A_____U___CUCAA...AAG-5'\n_____________|____________________________________________|\n_____________92___________________________________________63\n |
133 -- 139 |
84 -- 90 |
-16.5622 kcal/mol |
8.12255 kcal/mol |
2.88465 kcal/mol |
131 176@LB@ | |@LB@5'-UCA...UACGA GCCAGUAAU AUUCUUUAA A U AUUAU...CAA-3'@LB@ CAAAAGUU CGUU GGCU UGGUU UUC@LB@ |||||||| |||| |||| |:||| |||@LB@ GUUUUCAA GCAA CCGA AUCAA AAG@LB@3'-CGC...UAGGC GU A U CUCAA...AAG-5'@LB@ | |@LB@ 92 63@LB@@LB@@LB@Energy -5.56 kcal/mol@LB@Hybridization Energy -16.5622 kcal/mol@LB@Unfolding Energy - mRNA 8.12255 kcal/mol@LB@Unfolding Energy - sRNA 2.88465 kcal/mol@LB@@LB@Position - mRNA 132 -- 175@LB@Position - sRNA 64 -- 91@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 84 -- 90@LB@ |
56 |
0.01109 |
0.5385 |
b0425 |
panE |
-9.95 |
0.107741 |
273 -- 289 |
74 -- 89 |
2-dehydropantoate reductase NADPH-specific |
|
_____________272_______________290\n_____________|_________________|\n5'-AUC...GUCAU________G_GC_____GCGCG...CGC-3'\n______________GAAGUUCA_G__UGGCU\n______________:|||||||_|__|||||\n______________UUUCAAGU_C__ACCGA\n3'-CGC...GGCGU________G_A______AAUCA...AAG-5'\n_____________|_________________|\n_____________90________________73\n |
274 -- 280 |
82 -- 88 |
-18.2046 kcal/mol |
7.73441 kcal/mol |
0.517373 kcal/mol |
272 290@LB@ | |@LB@5'-AUC...GUCAU G GC GCGCG...CGC-3'@LB@ GAAGUUCA G UGGCU@LB@ :||||||| | |||||@LB@ UUUCAAGU C ACCGA@LB@3'-CGC...GGCGU G A AAUCA...AAG-5'@LB@ | |@LB@ 90 73@LB@@LB@@LB@Energy -9.95 kcal/mol@LB@Hybridization Energy -18.2046 kcal/mol@LB@Unfolding Energy - mRNA 7.73441 kcal/mol@LB@Unfolding Energy - sRNA 0.517373 kcal/mol@LB@@LB@Position - mRNA 273 -- 289@LB@Position - sRNA 74 -- 89@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 82 -- 88@LB@ |
57 |
0.01133 |
0.5385 |
b0026 |
ileS |
-8.45 |
0.192830 |
289 -- 299 |
74 -- 83 |
isoleucyl-tRNA synthetase |
|
_____________288_________300\n_____________|___________|\n5'-AUG...GCUGG________A__G-3'\n______________CGCGUUGG_CU\n______________|:||||||_||\n______________GUGCAACC_GA\n3'-CGC...UUCAA___________AAUCA...AAG-5'\n_____________|___________|\n_____________84__________73\n |
290 -- 296 |
76 -- 82 |
-13.1796 kcal/mol |
4.23376 kcal/mol |
0.494551 kcal/mol |
288 300@LB@ | |@LB@5'-AUG...GCUGG A G-3'@LB@ CGCGUUGG CU@LB@ |:|||||| ||@LB@ GUGCAACC GA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -13.1796 kcal/mol@LB@Unfolding Energy - mRNA 4.23376 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 289 -- 299@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 76 -- 82@LB@ |
58 |
0.01138 |
0.5385 |
b2595 |
bamD |
-7.85 |
0.240744 |
21 -- 29 |
72 -- 80 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________20________30\n_____________|_________|\n5'-CUG...ACCGA_________CGGAC...AUG-3'\n______________GUUGGUUUU\n______________|||||:|||\n______________CAACCGAAA\n3'-CGC...AAGUG_________UCAAU...AAG-5'\n_____________|_________|\n_____________81________71\n |
23 -- 29 |
72 -- 78 |
-10.2023 kcal/mol |
2.1418 kcal/mol |
0.205868 kcal/mol |
20 30@LB@ | |@LB@5'-CUG...ACCGA CGGAC...AUG-3'@LB@ GUUGGUUUU@LB@ |||||:|||@LB@ CAACCGAAA@LB@3'-CGC...AAGUG UCAAU...AAG-5'@LB@ | |@LB@ 81 71@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -10.2023 kcal/mol@LB@Unfolding Energy - mRNA 2.1418 kcal/mol@LB@Unfolding Energy - sRNA 0.205868 kcal/mol@LB@@LB@Position - mRNA 21 -- 29@LB@Position - sRNA 72 -- 80@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 72 -- 78@LB@ |