39 |
0.007274 |
0.5385 |
b1636 |
pdxY |
-13.08 |
0.030384 |
230 -- 254 |
60 -- 84 |
pyridoxamine kinase |
|
_____________229_______________________255\n_____________|_________________________|\n5'-UAU...CAGUC________U__A____C__G_____AACAG...UCU-3'\n______________UCACGUUG_UU_UGGU_AU_CGGGU\n______________||||||||_:|_|:||_||_||:||\n______________AGUGCAAC_GA_AUCA_UA_GCUCA\n3'-CGC...UUUCA________C__A____A__A_____ACUCU...AAG-5'\n_____________|_________________________|\n_____________85________________________59\n |
231 -- 237 |
77 -- 83 |
-19.8659 kcal/mol |
5.09201 kcal/mol |
1.69371 kcal/mol |
229 255@LB@ | |@LB@5'-UAU...CAGUC U A C G AACAG...UCU-3'@LB@ UCACGUUG UU UGGU AU CGGGU@LB@ |||||||| :| |:|| || ||:||@LB@ AGUGCAAC GA AUCA UA GCUCA@LB@3'-CGC...UUUCA C A A A ACUCU...AAG-5'@LB@ | |@LB@ 85 59@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -19.8659 kcal/mol@LB@Unfolding Energy - mRNA 5.09201 kcal/mol@LB@Unfolding Energy - sRNA 1.69371 kcal/mol@LB@@LB@Position - mRNA 230 -- 254@LB@Position - sRNA 60 -- 84@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 77 -- 83@LB@ |
40 |
0.008109 |
0.5385 |
b0784 |
moaD |
-13.26 |
0.028244 |
179 -- 200 |
15 -- 38 |
molybdopterin synthase small subunit |
|
_____________178______________________201\n_____________|________________________|\n5'-GCA...AGUCG_____________________C__AUGAU...AGC-3'\n______________GGUGACUUUAAGG__UGGAAG_GG\n______________:|||||||:||||__|::|||_||\n______________UCACUGAAGUUCC__AUUUUC_CC\n3'-CGC...GCCCG_____________CA______U__ACGGC...AAG-5'\n_____________|________________________|\n_____________39_______________________14\n |
185 -- 191 |
26 -- 32 |
-24.646 kcal/mol |
4.81525 kcal/mol |
6.57247 kcal/mol |
178 201@LB@ | |@LB@5'-GCA...AGUCG C AUGAU...AGC-3'@LB@ GGUGACUUUAAGG UGGAAG GG@LB@ :|||||||:|||| |::||| ||@LB@ UCACUGAAGUUCC AUUUUC CC@LB@3'-CGC...GCCCG CA U ACGGC...AAG-5'@LB@ | |@LB@ 39 14@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -24.646 kcal/mol@LB@Unfolding Energy - mRNA 4.81525 kcal/mol@LB@Unfolding Energy - sRNA 6.57247 kcal/mol@LB@@LB@Position - mRNA 179 -- 200@LB@Position - sRNA 15 -- 38@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 26 -- 32@LB@ |
41 |
0.00828 |
0.5385 |
b2246 |
rhmT |
-13.65 |
0.023999 |
257 -- 273 |
69 -- 86 |
putative L-rhamnonate transporter |
|
_____________256________________274\n_____________|__________________|\n5'-ACG...AUUCC____________GCU___AUGUG...CGA-3'\n______________GUUUAUGUUGGC____GU\n______________|||:|:||||||____||\n______________CAAGUGCAACCG____CA\n3'-CGC...GUUUU____________AAAU__AUAAG...AAG-5'\n_____________|__________________|\n_____________87_________________68\n |
262 -- 268 |
75 -- 81 |
-18.6828 kcal/mol |
4.45929 kcal/mol |
0.568509 kcal/mol |
256 274@LB@ | |@LB@5'-ACG...AUUCC GCU AUGUG...CGA-3'@LB@ GUUUAUGUUGGC GU@LB@ |||:|:|||||| ||@LB@ CAAGUGCAACCG CA@LB@3'-CGC...GUUUU AAAU AUAAG...AAG-5'@LB@ | |@LB@ 87 68@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -18.6828 kcal/mol@LB@Unfolding Energy - mRNA 4.45929 kcal/mol@LB@Unfolding Energy - sRNA 0.568509 kcal/mol@LB@@LB@Position - mRNA 257 -- 273@LB@Position - sRNA 69 -- 86@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 75 -- 81@LB@ |
42 |
0.008798 |
0.5385 |
b0087 |
mraY |
-9.88 |
0.111048 |
142 -- 153 |
79 -- 90 |
phospho-N-acetylmuramoyl-pentapeptide transferase |
|
_____________141__________154\n_____________|____________|\n5'-GAC...UAGUU____________AGUGC...CGC-3'\n______________AAGGGUUCACGU\n______________||::||||||||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
147 -- 153 |
79 -- 85 |
-14.1224 kcal/mol |
3.73912 kcal/mol |
0.506924 kcal/mol |
141 154@LB@ | |@LB@5'-GAC...UAGUU AGUGC...CGC-3'@LB@ AAGGGUUCACGU@LB@ ||::||||||||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -14.1224 kcal/mol@LB@Unfolding Energy - mRNA 3.73912 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 79 -- 85@LB@ |
43 |
0.009109 |
0.5385 |
b2531 |
iscR |
-9.39 |
0.134324 |
275 -- 298 |
62 -- 87 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________274________________________299\n_____________|__________________________|\n5'-AUG...GGCCC___A__________GAUAUUUC____AC-3'\n______________GGU_C_CGUUGGCU_________CGA\n______________:||_|_||||||||_________|||\n______________UCA_G_GCAACCGA_________GCU\n3'-CGC...CGUUU___A_U________AAUCAAUAA___CAACU...AAG-5'\n_____________|__________________________|\n_____________88_________________________61\n |
281 -- 287 |
74 -- 80 |
-16.3089 kcal/mol |
5.20915 kcal/mol |
1.70771 kcal/mol |
274 299@LB@ | |@LB@5'-AUG...GGCCC A GAUAUUUC AC-3'@LB@ GGU C CGUUGGCU CGA@LB@ :|| | |||||||| |||@LB@ UCA G GCAACCGA GCU@LB@3'-CGC...CGUUU A U AAUCAAUAA CAACU...AAG-5'@LB@ | |@LB@ 88 61@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -16.3089 kcal/mol@LB@Unfolding Energy - mRNA 5.20915 kcal/mol@LB@Unfolding Energy - sRNA 1.70771 kcal/mol@LB@@LB@Position - mRNA 275 -- 298@LB@Position - sRNA 62 -- 87@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 74 -- 80@LB@ |
44 |
0.009138 |
0.5385 |
b4148 |
sugE |
-12.73 |
0.035076 |
273 -- 288 |
62 -- 77 |
multidrug efflux system protein |
|
_____________272______________289\n_____________|________________|\n5'-CGC...CCCAC_________C______CGCCG...UUA-3'\n______________GGCUUUAGU_GUUUGA\n______________|||||||||_:||:||\n______________CCGAAAUCA_UAAGCU\n3'-CGC...UGCAA_________A______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
275 -- 281 |
69 -- 75 |
-18.0703 kcal/mol |
4.60455 kcal/mol |
0.736118 kcal/mol |
272 289@LB@ | |@LB@5'-CGC...CCCAC C CGCCG...UUA-3'@LB@ GGCUUUAGU GUUUGA@LB@ ||||||||| :||:||@LB@ CCGAAAUCA UAAGCU@LB@3'-CGC...UGCAA A CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -18.0703 kcal/mol@LB@Unfolding Energy - mRNA 4.60455 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 273 -- 288@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 69 -- 75@LB@ |
45 |
0.009513 |
0.5385 |
b2513 |
yfgM |
-9.58 |
0.124672 |
177 -- 189 |
15 -- 27 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________176___________190\n_____________|_____________|\n5'-GGC...UUACU_________A___AGAAG...UUG-3'\n______________GGGUUAAGG_AGG\n______________|||||||::_|||\n______________CCCAAUUUU_UCC\n3'-CGC...AAGUU_________C___ACGGC...AAG-5'\n_____________|_____________|\n_____________28____________14\n |
179 -- 185 |
19 -- 25 |
-14.0675 kcal/mol |
1.24912 kcal/mol |
3.23583 kcal/mol |
176 190@LB@ | |@LB@5'-GGC...UUACU A AGAAG...UUG-3'@LB@ GGGUUAAGG AGG@LB@ |||||||:: |||@LB@ CCCAAUUUU UCC@LB@3'-CGC...AAGUU C ACGGC...AAG-5'@LB@ | |@LB@ 28 14@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.0675 kcal/mol@LB@Unfolding Energy - mRNA 1.24912 kcal/mol@LB@Unfolding Energy - sRNA 3.23583 kcal/mol@LB@@LB@Position - mRNA 177 -- 189@LB@Position - sRNA 15 -- 27@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 19 -- 25@LB@ |
46 |
0.009803 |
0.5385 |
b1418 |
cybB |
-9.32 |
0.138160 |
281 -- 295 |
73 -- 89 |
cytochrome b561 |
|
_____________280_______________296\n_____________|_________________|\n5'-AAC...GCAAU_________________CUUCC-3'\n______________GGAGUUU_CG_UGGUUU\n______________::||||:_||_|||:||\n______________UUUCAAG_GC_ACCGAA\n3'-CGC...GGCGU_______U__A______AUCAA...AAG-5'\n_____________|_________________|\n_____________90________________72\n |
281 -- 287 |
83 -- 89 |
-12.2046 kcal/mol |
2.36714 kcal/mol |
0.517627 kcal/mol |
280 296@LB@ | |@LB@5'-AAC...GCAAU CUUCC-3'@LB@ GGAGUUU CG UGGUUU@LB@ ::||||: || |||:||@LB@ UUUCAAG GC ACCGAA@LB@3'-CGC...GGCGU U A AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -12.2046 kcal/mol@LB@Unfolding Energy - mRNA 2.36714 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 281 -- 295@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 83 -- 89@LB@ |
47 |
0.009854 |
0.5385 |
b3408 |
feoA |
-10.27 |
0.095129 |
159 -- 188 |
52 -- 83 |
ferrous iron transporter protein A |
|
_____________158_________________________________189\n_____________|___________________________________|\n5'-AGC...CGCCC____A_______________C___UAA________AAGUA...CUG-3'\n______________CAUG__GGU___AGUUA_UC_AGU___UGAGAAAC\n______________||:|__||:___|||||_||_|||___||||||||\n______________GUGC__CCG___UCAAU_AG_UCA___ACUCUUUG\n3'-CGC...UUCAA____AA___AAA_____A__C______________AGAGC...AAG-5'\n_____________|___________________________________|\n_____________84__________________________________51\n |
182 -- 188 |
52 -- 58 |
-20.9255 kcal/mol |
6.25891 kcal/mol |
4.4004 kcal/mol |
158 189@LB@ | |@LB@5'-AGC...CGCCC A C UAA AAGUA...CUG-3'@LB@ CAUG GGU AGUUA UC AGU UGAGAAAC@LB@ ||:| ||: ||||| || ||| ||||||||@LB@ GUGC CCG UCAAU AG UCA ACUCUUUG@LB@3'-CGC...UUCAA AA AAA A C AGAGC...AAG-5'@LB@ | |@LB@ 84 51@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -20.9255 kcal/mol@LB@Unfolding Energy - mRNA 6.25891 kcal/mol@LB@Unfolding Energy - sRNA 4.4004 kcal/mol@LB@@LB@Position - mRNA 159 -- 188@LB@Position - sRNA 52 -- 83@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 52 -- 58@LB@ |
48 |
0.009918 |
0.5385 |
b0641 |
lptE |
-9.88 |
0.110832 |
177 -- 184 |
74 -- 81 |
LPS assembly OM complex LptDE lipoprotein component |
|
_____________176______185\n_____________|________|\n5'-ACG...CUGGU________AAGCG...UGA-3'\n______________CGUUGGCU\n______________||||||||\n______________GCAACCGA\n3'-CGC...CAAGU________AAUCA...AAG-5'\n_____________|________|\n_____________82_______73\n |
178 -- 184 |
74 -- 80 |
-13.2047 kcal/mol |
2.99134 kcal/mol |
0.332056 kcal/mol |
176 185@LB@ | |@LB@5'-ACG...CUGGU AAGCG...UGA-3'@LB@ CGUUGGCU@LB@ ||||||||@LB@ GCAACCGA@LB@3'-CGC...CAAGU AAUCA...AAG-5'@LB@ | |@LB@ 82 73@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -13.2047 kcal/mol@LB@Unfolding Energy - mRNA 2.99134 kcal/mol@LB@Unfolding Energy - sRNA 0.332056 kcal/mol@LB@@LB@Position - mRNA 177 -- 184@LB@Position - sRNA 74 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 74 -- 80@LB@ |