| 2 |
0 |
0 |
b0796 |
ybiH |
-7.52 |
0.201543 |
119 -- 140 |
54 -- 76 |
DUF1956 domain-containing tetR family putative transcriptional regulator |
b1013 |
_____________118_____________________141\n_____________|_______________________|\n5'-CGG...GCGUU________UC_______UA____GACAA...CCA-3'\n______________GCUAAAAU__UUAGCCA___CUG\n______________||||||||__|:|||||___|:|\n______________CGAUUUUA__AGUCGGU___GGC\n3'-AUU...CCCGC________UA_______UUA___UAAUG...AUG-5'\n_____________|_______________________|\n_____________77______________________53\n |
129 -- 135 |
60 -- 66 |
-19.7488 kcal/mol |
5.88928 kcal/mol |
6.3634 kcal/mol |
118 141@LB@ | |@LB@5'-CGG...GCGUU UC UA GACAA...CCA-3'@LB@ GCUAAAAU UUAGCCA CUG@LB@ |||||||| |:||||| |:|@LB@ CGAUUUUA AGUCGGU GGC@LB@3'-AUU...CCCGC UA UUA UAAUG...AUG-5'@LB@ | |@LB@ 77 53@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -19.7488 kcal/mol@LB@Unfolding Energy - mRNA 5.88928 kcal/mol@LB@Unfolding Energy - sRNA 6.3634 kcal/mol@LB@@LB@Position - mRNA 119 -- 140@LB@Position - sRNA 54 -- 76@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 181 |
0.007802 |
0.1516 |
b1797 |
yeaR |
-7.07 |
0.254063 |
142 -- 149 |
2 -- 9 |
DUF1971 family protein nitrate-inducible |
|
_____________141______150\n_____________|________|\n5'-UGC...CAGGC________AAACG...AAG-3'\n______________GUACCCUG\n______________|||||||:\n______________CAUGGGAU\n3'-AUU...GGAGA________G-5'\n_____________|________|\n_____________10_______1\n |
143 -- 149 |
2 -- 8 |
-12.2602 kcal/mol |
3.09143 kcal/mol |
2.12684 kcal/mol |
141 150@LB@ | |@LB@5'-UGC...CAGGC AAACG...AAG-3'@LB@ GUACCCUG@LB@ |||||||:@LB@ CAUGGGAU@LB@3'-AUU...GGAGA G-5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.07 kcal/mol@LB@Hybridization Energy -12.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.09143 kcal/mol@LB@Unfolding Energy - sRNA 2.12684 kcal/mol@LB@@LB@Position - mRNA 142 -- 149@LB@Position - sRNA 2 -- 9@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 104 |
0.003257 |
0.1101 |
b0858 |
ybjO |
-8.07 |
0.149394 |
228 -- 257 |
2 -- 30 |
DUF2593 family inner membrane protein |
|
_____________227______________________________258\n_____________|________________________________|\n5'-AUG...UUUUU____A__________C_____A__CU_G____AAUGU...UUA-3'\n______________AAGA___AACAUCUU_AUCUC_UG__C_CCUG\n______________||||___||||||||_|:|||_||__|_|||:\n______________UUCU___UUGUAGAA_UGGAG_AC__G_GGAU\n3'-AUU...AGACU____AUC_________________AU______G-5'\n_____________|________________________________|\n_____________31_______________________________1\n |
234 -- 240 |
16 -- 22 |
-20.5501 kcal/mol |
4.45089 kcal/mol |
8.05308 kcal/mol |
227 258@LB@ | |@LB@5'-AUG...UUUUU A C A CU G AAUGU...UUA-3'@LB@ AAGA AACAUCUU AUCUC UG C CCUG@LB@ |||| |||||||| |:||| || | |||:@LB@ UUCU UUGUAGAA UGGAG AC G GGAU@LB@3'-AUU...AGACU AUC AU G-5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -20.5501 kcal/mol@LB@Unfolding Energy - mRNA 4.45089 kcal/mol@LB@Unfolding Energy - sRNA 8.05308 kcal/mol@LB@@LB@Position - mRNA 228 -- 257@LB@Position - sRNA 2 -- 30@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 158 |
0.00634 |
0.1412 |
b3598 |
yibI |
-10.19 |
0.039756 |
289 -- 298 |
49 -- 58 |
DUF3302 family inner membrane protein |
b3587 |
_____________288________299\n_____________|__________|\n5'-CGU...CCCUU__________CA-3'\n______________AUCUGAUUGC\n______________|||:||||:|\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
292 -- 298 |
49 -- 55 |
-10.9433 kcal/mol |
0.440755 kcal/mol |
0.318367 kcal/mol |
288 299@LB@ | |@LB@5'-CGU...CCCUU CA-3'@LB@ AUCUGAUUGC@LB@ |||:||||:|@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -10.9433 kcal/mol@LB@Unfolding Energy - mRNA 0.440755 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 77 |
0.00159 |
0.07263 |
b2159 |
nfo |
-11.23 |
0.018951 |
134 -- 154 |
4 -- 22 |
endonuclease IV with intrinsic 3'-5' exonuclease activity |
|
_____________133___________________155\n_____________|_____________________|\n5'-GAC...CCACU__________C____UA____GCUAU...CCA-3'\n______________ACAUCUUGCU_CUGU__ACCC\n______________|||||||:|:_||||__||||\n______________UGUAGAAUGG_GACA__UGGG\n3'-AUU...UAUCU__________A__________AUG-5'\n_____________|_____________________|\n_____________23____________________3\n |
134 -- 140 |
16 -- 22 |
-23.2044 kcal/mol |
4.007 kcal/mol |
7.98841 kcal/mol |
133 155@LB@ | |@LB@5'-GAC...CCACU C UA GCUAU...CCA-3'@LB@ ACAUCUUGCU CUGU ACCC@LB@ |||||||:|: |||| ||||@LB@ UGUAGAAUGG GACA UGGG@LB@3'-AUU...UAUCU A AUG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -23.2044 kcal/mol@LB@Unfolding Energy - mRNA 4.007 kcal/mol@LB@Unfolding Energy - sRNA 7.98841 kcal/mol@LB@@LB@Position - mRNA 134 -- 154@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 198 |
0.008802 |
0.1558 |
b1905 |
ftnA |
-8.07 |
0.149574 |
234 -- 260 |
3 -- 24 |
ferritin iron storage protein (cytoplasmic) |
|
_____________233_________________________261\n_____________|___________________________|\n5'-CAU...UUAAU_____GA_GA____GGAA_________UCACU...AUC-3'\n______________GAGCA__U__ACCU____CUGUACUCU\n______________||:||__|__||||____||||||:||\n______________CUUGU__A__UGGA____GACAUGGGA\n3'-AUU...UCUAU_____AG_A__________________UG-5'\n_____________|___________________________|\n_____________25__________________________2\n |
254 -- 260 |
3 -- 9 |
-20.546 kcal/mol |
4.48094 kcal/mol |
8.02061 kcal/mol |
233 261@LB@ | |@LB@5'-CAU...UUAAU GA GA GGAA UCACU...AUC-3'@LB@ GAGCA U ACCU CUGUACUCU@LB@ ||:|| | |||| ||||||:||@LB@ CUUGU A UGGA GACAUGGGA@LB@3'-AUU...UCUAU AG A UG-5'@LB@ | |@LB@ 25 2@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -20.546 kcal/mol@LB@Unfolding Energy - mRNA 4.48094 kcal/mol@LB@Unfolding Energy - sRNA 8.02061 kcal/mol@LB@@LB@Position - mRNA 234 -- 260@LB@Position - sRNA 3 -- 24@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 166 |
0.006804 |
0.1439 |
b0475 |
hemH |
-7.56 |
0.197603 |
220 -- 228 |
1 -- 9 |
ferrochelatase |
|
_____________219_______229\n_____________|_________|\n5'-CGG...AACCG_________UGGCA...GCG-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
222 -- 228 |
1 -- 7 |
-12.5413 kcal/mol |
2.87943 kcal/mol |
2.12872 kcal/mol |
219 229@LB@ | |@LB@5'-CGG...AACCG UGGCA...GCG-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -12.5413 kcal/mol@LB@Unfolding Energy - mRNA 2.87943 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 220 -- 228@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 197 |
0.00873 |
0.1558 |
b2324 |
mnmC |
-9.11 |
0.080832 |
111 -- 120 |
52 -- 61 |
fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme |
|
_____________110________121\n_____________|__________|\n5'-GCU...CCGAA__________CAGCC...ACG-3'\n______________CAAGUCCGAU\n______________|||:||||||\n______________GUUUAGGCUA\n3'-AUU...AGUCG__________AUGCA...AUG-5'\n_____________|__________|\n_____________62_________51\n |
114 -- 120 |
52 -- 58 |
-12.6788 kcal/mol |
1.38997 kcal/mol |
2.20422 kcal/mol |
110 121@LB@ | |@LB@5'-GCU...CCGAA CAGCC...ACG-3'@LB@ CAAGUCCGAU@LB@ |||:||||||@LB@ GUUUAGGCUA@LB@3'-AUU...AGUCG AUGCA...AUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -12.6788 kcal/mol@LB@Unfolding Energy - mRNA 1.38997 kcal/mol@LB@Unfolding Energy - sRNA 2.20422 kcal/mol@LB@@LB@Position - mRNA 111 -- 120@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 47 |
0.0005047 |
0.03778 |
b1888 |
cheA |
-10.26 |
0.037926 |
179 -- 191 |
53 -- 66 |
fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
|
_____________178____________192\n_____________|______________|\n5'-GAU...UGCCA______________GGUGA...AAG-3'\n______________UCAGCCGAA_CCGA\n______________||||||:||_||||\n______________AGUCGGUUU_GGCU\n3'-AUU...UUAUA_________A____AAUGC...AUG-5'\n_____________|______________|\n_____________67_____________52\n |
181 -- 187 |
58 -- 64 |
-19.401 kcal/mol |
2.99348 kcal/mol |
6.16775 kcal/mol |
178 192@LB@ | |@LB@5'-GAU...UGCCA GGUGA...AAG-3'@LB@ UCAGCCGAA CCGA@LB@ ||||||:|| ||||@LB@ AGUCGGUUU GGCU@LB@3'-AUU...UUAUA A AAUGC...AUG-5'@LB@ | |@LB@ 67 52@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -19.401 kcal/mol@LB@Unfolding Energy - mRNA 2.99348 kcal/mol@LB@Unfolding Energy - sRNA 6.16775 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 53 -- 66@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 1 |
0 |
0 |
b0757 |
galK |
-15.06 |
0.000658 |
183 -- 231 |
8 -- 60 |
galactokinase |
|
_____________182_____________________________________________________232\n_____________|_______________________________________________________|\n5'-CAU...UUCGC_______GA______U___AAAU_____________AAA____CA__________UUGCC...GUG-3'\n______________GAAUCCG_____GUG_AAG____GAG_UCUGAAAGA___AACA____AUCUCUGU\n______________:||||||_____|||_|||____:||_|||||||||___||||____|:||||||\n______________UUUAGGC_____CAC_UUC____UUC_AGACUUUCU___UUGU____UGGAGACA\n3'-AUU...GUCGG_______UAAUG_______AUU____C_________AUC____AGAA________UGGGAUG-5'\n_____________|_______________________________________________________|\n_____________61______________________________________________________7\n |
225 -- 231 |
8 -- 14 |
-35.0906 kcal/mol |
7.3474 kcal/mol |
12.6967 kcal/mol |
182 232@LB@ | |@LB@5'-CAU...UUCGC GA U AAAU AAA CA UUGCC...GUG-3'@LB@ GAAUCCG GUG AAG GAG UCUGAAAGA AACA AUCUCUGU@LB@ :|||||| ||| ||| :|| ||||||||| |||| |:||||||@LB@ UUUAGGC CAC UUC UUC AGACUUUCU UUGU UGGAGACA@LB@3'-AUU...GUCGG UAAUG AUU C AUC AGAA UGGGAUG-5'@LB@ | |@LB@ 61 7@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -35.0906 kcal/mol@LB@Unfolding Energy - mRNA 7.3474 kcal/mol@LB@Unfolding Energy - sRNA 12.6967 kcal/mol@LB@@LB@Position - mRNA 183 -- 231@LB@Position - sRNA 8 -- 60@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
