81 |
0.001761 |
0.07647 |
b3311 |
rpsQ |
-9.62 |
0.058411 |
217 -- 225 |
1 -- 9 |
30S ribosomal subunit protein S17 |
|
_____________216_______226\n_____________|_________|\n5'-GGU...AAUCC_________AAGGU...UCU-3'\n______________GUACUCUGC\n______________||||:||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
219 -- 225 |
1 -- 7 |
-13.7932 kcal/mol |
2.07071 kcal/mol |
2.12872 kcal/mol |
216 226@LB@ | |@LB@5'-GGU...AAUCC AAGGU...UCU-3'@LB@ GUACUCUGC@LB@ ||||:||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -13.7932 kcal/mol@LB@Unfolding Energy - mRNA 2.07071 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 217 -- 225@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 1 -- 7@LB@ |
42 |
0.0004615 |
0.03766 |
b3341 |
rpsG |
-11.13 |
0.020425 |
227 -- 249 |
53 -- 76 |
30S ribosomal subunit protein S7 |
|
_____________226______________________250\n_____________|________________________|\n5'-CGG...GGUCA__GU________U___________AGUUC...AUG-3'\n______________GC__AAA_AUUC_GCCGGAUCCGA\n______________||__|||_||||_|||::||||||\n______________CG__UUU_UAAG_CGGUUUAGGCU\n3'-AUU...CCCGC__AU___A____U___________AAUGC...AUG-5'\n_____________|________________________|\n_____________77_______________________52\n |
243 -- 249 |
53 -- 59 |
-23.8099 kcal/mol |
6.33566 kcal/mol |
6.36489 kcal/mol |
226 250@LB@ | |@LB@5'-CGG...GGUCA GU U AGUUC...AUG-3'@LB@ GC AAA AUUC GCCGGAUCCGA@LB@ || ||| |||| |||::||||||@LB@ CG UUU UAAG CGGUUUAGGCU@LB@3'-AUU...CCCGC AU A U AAUGC...AUG-5'@LB@ | |@LB@ 77 52@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -23.8099 kcal/mol@LB@Unfolding Energy - mRNA 6.33566 kcal/mol@LB@Unfolding Energy - sRNA 6.36489 kcal/mol@LB@@LB@Position - mRNA 227 -- 249@LB@Position - sRNA 53 -- 76@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 53 -- 59@LB@ |
53 |
0.0007581 |
0.04961 |
b1302 |
puuE |
-16.93 |
0.000076 |
166 -- 207 |
20 -- 57 |
4-aminobutyrate aminotransferase PLP-dependent |
b2662 |
_____________165_________________________________________208\n_____________|___________________________________________|\n5'-AGC...UAAUU________AC_______AGUC_______G_____C________ACAAU...CGC-3'\n______________UCCGAUUA__CGUGAAG____AAAAGGU_UGAAA_AU_GAGCA\n______________||||||||__|||||||____|||||||_|||||_||_||:||\n______________AGGCUAAU__GCACUUC____UUUUCCA_ACUUU_UA_CUUGU\n3'-AUU...GGUUU_________________A__________G_____C__U_____AGAAU...AUG-5'\n_____________|___________________________________________|\n_____________58__________________________________________19\n |
176 -- 182 |
43 -- 49 |
-36.956 kcal/mol |
7.85943 kcal/mol |
12.1551 kcal/mol |
165 208@LB@ | |@LB@5'-AGC...UAAUU AC AGUC G C ACAAU...CGC-3'@LB@ UCCGAUUA CGUGAAG AAAAGGU UGAAA AU GAGCA@LB@ |||||||| ||||||| ||||||| ||||| || ||:||@LB@ AGGCUAAU GCACUUC UUUUCCA ACUUU UA CUUGU@LB@3'-AUU...GGUUU A G C U AGAAU...AUG-5'@LB@ | |@LB@ 58 19@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -36.956 kcal/mol@LB@Unfolding Energy - mRNA 7.85943 kcal/mol@LB@Unfolding Energy - sRNA 12.1551 kcal/mol@LB@@LB@Position - mRNA 166 -- 207@LB@Position - sRNA 20 -- 57@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 43 -- 49@LB@ |
6 |
1.448e-05 |
0.00754 |
b3863 |
polA |
-11.40 |
0.016745 |
236 -- 262 |
1 -- 29 |
5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
|
_____________235___________________________263\n_____________|_____________________________|\n5'-AGA...CUUGU______UU_________________GC__AUAUC...GCG-3'\n______________AGAUGG__CAUCUUAUCUU__UAUC__GC\n______________||||:|__|||||||:||:__||:|__:|\n______________UCUAUC__GUAGAAUGGAG__AUGG__UG\n3'-AUU...GACUU______UU___________AC____GA__-5'\n_____________|____________________________|\n_____________30___________________________1\n |
244 -- 250 |
15 -- 21 |
-25.0693 kcal/mol |
5.64295 kcal/mol |
8.05079 kcal/mol |
235 263@LB@ | |@LB@5'-AGA...CUUGU UU GC AUAUC...GCG-3'@LB@ AGAUGG CAUCUUAUCUU UAUC GC@LB@ ||||:| |||||||:||: ||:| :|@LB@ UCUAUC GUAGAAUGGAG AUGG UG@LB@3'-AUU...GACUU UU AC GA -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -25.0693 kcal/mol@LB@Unfolding Energy - mRNA 5.64295 kcal/mol@LB@Unfolding Energy - sRNA 8.05079 kcal/mol@LB@@LB@Position - mRNA 236 -- 262@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 15 -- 21@LB@ |
43 |
0.0004631 |
0.03766 |
b4346 |
mcrB |
-12.47 |
0.007188 |
270 -- 300 |
1 -- 31 |
5-methylcytosine-specific restriction enzyme McrBC subunit McrB |
|
_____________269_______________________________300\n_____________|_________________________________|\n5'-UUU...CCACU______UAUCC_________________A_____-3'\n______________AAAGAU_____AACGUCUUACC___GUA_CCUGC\n______________||||||_____|||:|||||||___|||_|||:|\n______________UUUCUA_____UUGUAGAAUGG___CAU_GGAUG\n3'-AUU...CAGAC______UC______________AGA___G_____-5'\n_____________|_________________________________|\n_____________32________________________________1\n |
285 -- 291 |
13 -- 19 |
-24.3421 kcal/mol |
3.83264 kcal/mol |
8.05889 kcal/mol |
269 300@LB@ | |@LB@5'-UUU...CCACU UAUCC A -3'@LB@ AAAGAU AACGUCUUACC GUA CCUGC@LB@ |||||| |||:||||||| ||| |||:|@LB@ UUUCUA UUGUAGAAUGG CAU GGAUG@LB@3'-AUU...CAGAC UC AGA G -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -24.3421 kcal/mol@LB@Unfolding Energy - mRNA 3.83264 kcal/mol@LB@Unfolding Energy - sRNA 8.05889 kcal/mol@LB@@LB@Position - mRNA 270 -- 300@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 13 -- 19@LB@ |
195 |
0.008707 |
0.1558 |
b3318 |
rplW |
-7.58 |
0.194751 |
202 -- 213 |
43 -- 55 |
50S ribosomal subunit protein L23 |
|
_____________201___________214\n_____________|_____________|\n5'-GCA...UGGCA_____________AACGU...AAG-3'\n______________UGAUU_CGUGAAG\n______________:||||_|||||||\n______________GCUAA_GCACUUC\n3'-AUU...UUUAG_____U_______AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
207 -- 213 |
43 -- 49 |
-13.4464 kcal/mol |
2.60751 kcal/mol |
3.2693 kcal/mol |
201 214@LB@ | |@LB@5'-GCA...UGGCA AACGU...AAG-3'@LB@ UGAUU CGUGAAG@LB@ :|||| |||||||@LB@ GCUAA GCACUUC@LB@3'-AUU...UUUAG U AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -13.4464 kcal/mol@LB@Unfolding Energy - mRNA 2.60751 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 43 -- 49@LB@ |
119 |
0.003968 |
0.1172 |
b2765 |
queD |
-8.07 |
0.149030 |
164 -- 172 |
1 -- 9 |
6-pyruvoyl tetrahydrobiopterin synthase (PTPS) |
|
_____________163_______173\n_____________|_________|\n5'-AAC...UUCCG_________GGCGG...AUU-3'\n______________GUACUCUAC\n______________||||:||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
166 -- 172 |
1 -- 7 |
-12.1088 kcal/mol |
1.92954 kcal/mol |
2.12872 kcal/mol |
163 173@LB@ | |@LB@5'-AAC...UUCCG GGCGG...AUU-3'@LB@ GUACUCUAC@LB@ ||||:||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -12.1088 kcal/mol@LB@Unfolding Energy - mRNA 1.92954 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 1 -- 7@LB@ |
23 |
0.0001777 |
0.02687 |
b0774 |
bioA |
-12.72 |
0.005870 |
209 -- 228 |
5 -- 24 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________208___________________229\n_____________|_____________________|\n5'-ACG...ACAAC____G________________AACGC...AAG-3'\n______________GGAC_AUCUUGCCUUUG_ACC\n______________|:||_|||||:|||:||_|||\n______________CUUG_UAGAAUGGAGAC_UGG\n3'-AUU...UCUAU_________________A___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
219 -- 225 |
9 -- 15 |
-24.4474 kcal/mol |
3.74608 kcal/mol |
8.01095 kcal/mol |
208 229@LB@ | |@LB@5'-ACG...ACAAC G AACGC...AAG-3'@LB@ GGAC AUCUUGCCUUUG ACC@LB@ |:|| |||||:|||:|| |||@LB@ CUUG UAGAAUGGAGAC UGG@LB@3'-AUU...UCUAU A GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -24.4474 kcal/mol@LB@Unfolding Energy - mRNA 3.74608 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 9 -- 15@LB@ |
85 |
0.002234 |
0.09158 |
b0118 |
acnB |
-9.43 |
0.065848 |
121 -- 128 |
1 -- 8 |
aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase |
|
_____________120______129\n_____________|________|\n5'-GAG...GCAUU________AAACU...UGC-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
122 -- 128 |
1 -- 7 |
-13.4001 kcal/mol |
1.87598 kcal/mol |
2.11603 kcal/mol |
120 129@LB@ | |@LB@5'-GAG...GCAUU AAACU...UGC-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.4001 kcal/mol@LB@Unfolding Energy - mRNA 1.87598 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 121 -- 128@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 1 -- 7@LB@ |
112 |
0.003594 |
0.1129 |
b3866 |
yihI |
-3.87 |
0.795256 |
171 -- 194 |
53 -- 75 |
activator of Der GTPase |
|
_____________170______________________195\n_____________|________________________|\n5'-GAA...CUAUA_____UAAAA________AGA___ACCAU...GUC-3'\n______________CUGAA_____CGGCUAAA___CGA\n______________||:||_____|:||:|||___|||\n______________GAUUU_____GUCGGUUU___GCU\n3'-AUU...CCGCC_____UAUAA________AG____AAUGC...AUG-5'\n_____________|________________________|\n_____________76_______________________52\n |
181 -- 187 |
59 -- 65 |
-14.4152 kcal/mol |
4.20142 kcal/mol |
6.36326 kcal/mol |
170 195@LB@ | |@LB@5'-GAA...CUAUA UAAAA AGA ACCAU...GUC-3'@LB@ CUGAA CGGCUAAA CGA@LB@ ||:|| |:||:||| |||@LB@ GAUUU GUCGGUUU GCU@LB@3'-AUU...CCGCC UAUAA AG AAUGC...AUG-5'@LB@ | |@LB@ 76 52@LB@@LB@@LB@Energy -3.87 kcal/mol@LB@Hybridization Energy -14.4152 kcal/mol@LB@Unfolding Energy - mRNA 4.20142 kcal/mol@LB@Unfolding Energy - sRNA 6.36326 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 53 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 59 -- 65@LB@ |