156 |
0.006236 |
0.1406 |
b2922 |
yggE |
-5.46 |
0.507768 |
199 -- 207 |
42 -- 50 |
oxidative stress defense protein |
|
_____________198_______208\n_____________|_________|\n5'-GCA...GACUA_________UCAAA...CCG-3'\n______________ACGUGAAGU\n______________|||||||||\n______________UGCACUUCA\n3'-AUU...GCUAA_________UUUUC...AUG-5'\n_____________|_________|\n_____________51________41\n |
201 -- 207 |
42 -- 48 |
-12.7727 kcal/mol |
4.07491 kcal/mol |
3.2504 kcal/mol |
198 208@LB@ | |@LB@5'-GCA...GACUA UCAAA...CCG-3'@LB@ ACGUGAAGU@LB@ |||||||||@LB@ UGCACUUCA@LB@3'-AUU...GCUAA UUUUC...AUG-5'@LB@ | |@LB@ 51 41@LB@@LB@@LB@Energy -5.46 kcal/mol@LB@Hybridization Energy -12.7727 kcal/mol@LB@Unfolding Energy - mRNA 4.07491 kcal/mol@LB@Unfolding Energy - sRNA 3.2504 kcal/mol@LB@@LB@Position - mRNA 199 -- 207@LB@Position - sRNA 42 -- 50@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 42 -- 48@LB@ |
153 |
0.006198 |
0.1406 |
b3459 |
panM |
-8.50 |
0.116540 |
144 -- 151 |
50 -- 57 |
PanD autocleavage accelerator panothenate synthesis |
|
_____________143______152\n_____________|________|\n5'-AAA...AAGCC________AAUUA...UUG-3'\n______________UCCGAUUA\n______________||||||||\n______________AGGCUAAU\n3'-AUU...GGUUU________GCACU...AUG-5'\n_____________|________|\n_____________58_______49\n |
145 -- 151 |
50 -- 56 |
-10.246 kcal/mol |
1.44461 kcal/mol |
0.317388 kcal/mol |
143 152@LB@ | |@LB@5'-AAA...AAGCC AAUUA...UUG-3'@LB@ UCCGAUUA@LB@ ||||||||@LB@ AGGCUAAU@LB@3'-AUU...GGUUU GCACU...AUG-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -10.246 kcal/mol@LB@Unfolding Energy - mRNA 1.44461 kcal/mol@LB@Unfolding Energy - sRNA 0.317388 kcal/mol@LB@@LB@Position - mRNA 144 -- 151@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 50 -- 56@LB@ |
135 |
0.004796 |
0.125 |
b3634 |
coaD |
-9.06 |
0.083023 |
69 -- 85 |
49 -- 66 |
pantetheine-phosphate adenylyltransferase |
|
_____________68_________________86\n_____________|__________________|\n5'-GGA...UUUAC________CG________CGUAG...UUC-3'\n______________UCA_CCGA__CCGAUUAC\n______________|||_||:|__||||||||\n______________AGU_GGUU__GGCUAAUG\n3'-AUU...UUAUA___C____UA________CACUU...AUG-5'\n_____________|__________________|\n_____________67_________________48\n |
79 -- 85 |
49 -- 55 |
-17.7938 kcal/mol |
2.54845 kcal/mol |
6.20469 kcal/mol |
68 86@LB@ | |@LB@5'-GGA...UUUAC CG CGUAG...UUC-3'@LB@ UCA CCGA CCGAUUAC@LB@ ||| ||:| ||||||||@LB@ AGU GGUU GGCUAAUG@LB@3'-AUU...UUAUA C UA CACUU...AUG-5'@LB@ | |@LB@ 67 48@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -17.7938 kcal/mol@LB@Unfolding Energy - mRNA 2.54845 kcal/mol@LB@Unfolding Energy - sRNA 6.20469 kcal/mol@LB@@LB@Position - mRNA 69 -- 85@LB@Position - sRNA 49 -- 66@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 49 -- 55@LB@ |
82 |
0.001877 |
0.08053 |
b3199 |
lptC |
-13.73 |
0.002422 |
95 -- 106 |
45 -- 56 |
periplasmic membrane-anchored LPS-binding protein; LPS export protein |
|
_____________94___________107\n_____________|____________|\n5'-UAU...GCGCG____________CGCGC...UGG-3'\n______________CCGAUUACGUGA\n______________||||||||||||\n______________GGCUAAUGCACU\n3'-AUU...GUUUA____________UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
100 -- 106 |
45 -- 51 |
-18.6784 kcal/mol |
2.68909 kcal/mol |
2.27945 kcal/mol |
94 107@LB@ | |@LB@5'-UAU...GCGCG CGCGC...UGG-3'@LB@ CCGAUUACGUGA@LB@ ||||||||||||@LB@ GGCUAAUGCACU@LB@3'-AUU...GUUUA UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -18.6784 kcal/mol@LB@Unfolding Energy - mRNA 2.68909 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 95 -- 106@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 45 -- 51@LB@ |
46 |
0.0005017 |
0.03778 |
b1713 |
pheT |
-7.80 |
0.173677 |
95 -- 107 |
17 -- 29 |
phenylalanine tRNA synthetase beta subunit |
|
_____________94____________108\n_____________|_____________|\n5'-CUG...GAUGG_____________GACUA...ACG-3'\n______________GGAUGGAGCGUCU\n______________:|||:||:|:|||\n______________UCUAUCUUGUAGA\n3'-AUU...GACUU_____________AUGGA...AUG-5'\n_____________|_____________|\n_____________30____________16\n |
100 -- 106 |
18 -- 24 |
-17.5948 kcal/mol |
5.55471 kcal/mol |
4.26164 kcal/mol |
94 108@LB@ | |@LB@5'-CUG...GAUGG GACUA...ACG-3'@LB@ GGAUGGAGCGUCU@LB@ :|||:||:|:|||@LB@ UCUAUCUUGUAGA@LB@3'-AUU...GACUU AUGGA...AUG-5'@LB@ | |@LB@ 30 16@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -17.5948 kcal/mol@LB@Unfolding Energy - mRNA 5.55471 kcal/mol@LB@Unfolding Energy - sRNA 4.26164 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 17 -- 29@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 18 -- 24@LB@ |
73 |
0.001217 |
0.05856 |
b1702 |
ppsA |
-8.47 |
0.118779 |
124 -- 132 |
50 -- 58 |
phosphoenolpyruvate synthase |
|
_____________123_______133\n_____________|_________|\n5'-UAU...UUUUC_________AAUAU...AAA-3'\n______________AUCCGGUUA\n______________|||||:|||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
126 -- 132 |
50 -- 56 |
-10.3571 kcal/mol |
1.58803 kcal/mol |
0.317553 kcal/mol |
123 133@LB@ | |@LB@5'-UAU...UUUUC AAUAU...AAA-3'@LB@ AUCCGGUUA@LB@ |||||:|||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -10.3571 kcal/mol@LB@Unfolding Energy - mRNA 1.58803 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 124 -- 132@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 50 -- 56@LB@ |
186 |
0.008252 |
0.1556 |
b2026 |
hisI |
-8.65 |
0.106637 |
17 -- 26 |
42 -- 51 |
phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase |
|
_____________16_________27\n_____________|__________|\n5'-GAA...AAAAG__________UUGCC...UGC-3'\n______________UGCGUGAAGU\n______________|:||||||||\n______________AUGCACUUCA\n3'-AUU...GGCUA__________UUUUC...AUG-5'\n_____________|__________|\n_____________52_________41\n |
20 -- 26 |
42 -- 48 |
-13.8545 kcal/mol |
1.95631 kcal/mol |
3.26026 kcal/mol |
16 27@LB@ | |@LB@5'-GAA...AAAAG UUGCC...UGC-3'@LB@ UGCGUGAAGU@LB@ |:||||||||@LB@ AUGCACUUCA@LB@3'-AUU...GGCUA UUUUC...AUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -8.65 kcal/mol@LB@Hybridization Energy -13.8545 kcal/mol@LB@Unfolding Energy - mRNA 1.95631 kcal/mol@LB@Unfolding Energy - sRNA 3.26026 kcal/mol@LB@@LB@Position - mRNA 17 -- 26@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 42 -- 48@LB@ |
97 |
0.002764 |
0.1002 |
b3935 |
priA |
-7.71 |
0.181779 |
237 -- 247 |
3 -- 14 |
Primosome factor n' (replication factor Y) |
|
_____________236__________248\n_____________|____________|\n5'-GAA...CGCUU____________UGACU...GCG-3'\n______________CCUC_GUACCUU\n______________||||_|||||:|\n______________GGAG_CAUGGGA\n3'-AUU...AGAAU____A_______UG-5'\n_____________|____________|\n_____________15___________2\n |
241 -- 247 |
3 -- 9 |
-14.2439 kcal/mol |
1.19768 kcal/mol |
5.35591 kcal/mol |
236 248@LB@ | |@LB@5'-GAA...CGCUU UGACU...GCG-3'@LB@ CCUC GUACCUU@LB@ |||| |||||:|@LB@ GGAG CAUGGGA@LB@3'-AUU...AGAAU A UG-5'@LB@ | |@LB@ 15 2@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -14.2439 kcal/mol@LB@Unfolding Energy - mRNA 1.19768 kcal/mol@LB@Unfolding Energy - sRNA 5.35591 kcal/mol@LB@@LB@Position - mRNA 237 -- 247@LB@Position - sRNA 3 -- 14@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 3 -- 9@LB@ |
179 |
0.007709 |
0.1511 |
b4111 |
proP |
-8.76 |
0.100034 |
225 -- 232 |
49 -- 56 |
proline/glycine betaine transporter |
|
_____________224______233\n_____________|________|\n5'-CAC...UAAAA________CCUUC...GUA-3'\n______________CCGAUUAC\n______________||||||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
226 -- 232 |
49 -- 55 |
-10.6643 kcal/mol |
1.60159 kcal/mol |
0.317884 kcal/mol |
224 233@LB@ | |@LB@5'-CAC...UAAAA CCUUC...GUA-3'@LB@ CCGAUUAC@LB@ ||||||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -10.6643 kcal/mol@LB@Unfolding Energy - mRNA 1.60159 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 225 -- 232@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 49 -- 55@LB@ |
174 |
0.007262 |
0.1466 |
b0473 |
htpG |
-8.02 |
0.153160 |
10 -- 17 |
50 -- 57 |
protein refolding molecular co-chaperone Hsp90 Hsp70-dependent; heat-shock protein; ATPase |
|
_____________9________18\n_____________|________|\n5'-UCA...GGCGU________GCGGC...GUG-3'\n______________UCCGGUUG\n______________||||:||:\n______________AGGCUAAU\n3'-AUU...GGUUU________GCACU...AUG-5'\n_____________|________|\n_____________58_______49\n |
11 -- 17 |
50 -- 56 |
-9.07782 kcal/mol |
0.753256 kcal/mol |
0.317388 kcal/mol |
9 18@LB@ | |@LB@5'-UCA...GGCGU GCGGC...GUG-3'@LB@ UCCGGUUG@LB@ ||||:||:@LB@ AGGCUAAU@LB@3'-AUU...GGUUU GCACU...AUG-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -9.07782 kcal/mol@LB@Unfolding Energy - mRNA 0.753256 kcal/mol@LB@Unfolding Energy - sRNA 0.317388 kcal/mol@LB@@LB@Position - mRNA 10 -- 17@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 50 -- 56@LB@ |