5 |
1.055e-05 |
0.007422 |
b1287 |
yciW |
-9.98 |
0.045809 |
266 -- 289 |
4 -- 27 |
putative oxidoreductase |
|
_____________265______________________290\n_____________|________________________|\n5'-GUC...ACGGA___U______C________GU___GGAAG...CAA-3'\n______________GUA_GACGUU_UGCCUCUG__CCC\n______________:||_:||:|:_|:||||||__|||\n______________UAU_UUGUAG_AUGGAGAC__GGG\n3'-AUU...CUUUC___C______A________AU___AUG-5'\n_____________|________________________|\n_____________28_______________________3\n |
278 -- 284 |
9 -- 15 |
-26.8114 kcal/mol |
8.80708 kcal/mol |
8.0435 kcal/mol |
265 290@LB@ | |@LB@5'-GUC...ACGGA U C GU GGAAG...CAA-3'@LB@ GUA GACGUU UGCCUCUG CCC@LB@ :|| :||:|: |:|||||| |||@LB@ UAU UUGUAG AUGGAGAC GGG@LB@3'-AUU...CUUUC C A AU AUG-5'@LB@ | |@LB@ 28 3@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -26.8114 kcal/mol@LB@Unfolding Energy - mRNA 8.80708 kcal/mol@LB@Unfolding Energy - sRNA 8.0435 kcal/mol@LB@@LB@Position - mRNA 266 -- 289@LB@Position - sRNA 4 -- 27@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 9 -- 15@LB@ |
106 |
0.003365 |
0.1101 |
b0955 |
ycbZ |
-10.52 |
0.031644 |
269 -- 288 |
48 -- 66 |
putative peptidase |
|
_____________268__________________289\n_____________|____________________|\n5'-UUG...UUUGC_______C_________A__AAAAC...CUU-3'\n______________UCAGCCA_AUUUGAUUG_CG\n______________|||||||_||::||||:_||\n______________AGUCGGU_UAGGCUAAU_GC\n3'-AUU...UUAUA_______U____________ACUUC...AUG-5'\n_____________|____________________|\n_____________67___________________47\n |
279 -- 285 |
50 -- 56 |
-21.5915 kcal/mol |
3.60671 kcal/mol |
7.48271 kcal/mol |
268 289@LB@ | |@LB@5'-UUG...UUUGC C A AAAAC...CUU-3'@LB@ UCAGCCA AUUUGAUUG CG@LB@ ||||||| ||::||||: ||@LB@ AGUCGGU UAGGCUAAU GC@LB@3'-AUU...UUAUA U ACUUC...AUG-5'@LB@ | |@LB@ 67 47@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -21.5915 kcal/mol@LB@Unfolding Energy - mRNA 3.60671 kcal/mol@LB@Unfolding Energy - sRNA 7.48271 kcal/mol@LB@@LB@Position - mRNA 269 -- 288@LB@Position - sRNA 48 -- 66@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
139 |
0.005017 |
0.127 |
b2603 |
yfiR |
-11.92 |
0.011246 |
223 -- 243 |
1 -- 19 |
putative periplasmic inhibitor of YfiN activity |
|
_____________222___________________244\n_____________|_____________________|\n5'-GUA...ACUGU___________AUUC______UGACG...GUA-3'\n______________UCUUACUUCUG____UCCUGC\n______________||||||:||||____:|||:|\n______________AGAAUGGAGAC____GGGAUG\n3'-AUU...CUUGU___________AU________-5'\n_____________|____________________|\n_____________20___________________1\n |
227 -- 233 |
9 -- 15 |
-21.8705 kcal/mol |
2.00959 kcal/mol |
7.96751 kcal/mol |
222 244@LB@ | |@LB@5'-GUA...ACUGU AUUC UGACG...GUA-3'@LB@ UCUUACUUCUG UCCUGC@LB@ ||||||:|||| :|||:|@LB@ AGAAUGGAGAC GGGAUG@LB@3'-AUU...CUUGU AU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -21.8705 kcal/mol@LB@Unfolding Energy - mRNA 2.00959 kcal/mol@LB@Unfolding Energy - sRNA 7.96751 kcal/mol@LB@@LB@Position - mRNA 223 -- 243@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 9 -- 15@LB@ |
130 |
0.004431 |
0.1199 |
b3355 |
prkB |
-7.29 |
0.227256 |
214 -- 220 |
52 -- 58 |
putative phosphoribulokinase |
|
_____________213_____221\n_____________|_______|\n5'-GGC...CAAAC_______CAUUG...AUC-3'\n______________AUCCGGU\n______________|||||:|\n______________UAGGCUA\n3'-AUU...CGGUU_______AUGCA...AUG-5'\n_____________|_______|\n_____________59______51\n |
214 -- 220 |
52 -- 58 |
-8.26146 kcal/mol |
0.695321 kcal/mol |
0.296688 kcal/mol |
213 221@LB@ | |@LB@5'-GGC...CAAAC CAUUG...AUC-3'@LB@ AUCCGGU@LB@ |||||:|@LB@ UAGGCUA@LB@3'-AUU...CGGUU AUGCA...AUG-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -8.26146 kcal/mol@LB@Unfolding Energy - mRNA 0.695321 kcal/mol@LB@Unfolding Energy - sRNA 0.296688 kcal/mol@LB@@LB@Position - mRNA 214 -- 220@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 52 -- 58@LB@ |
191 |
0.008587 |
0.1558 |
b0823 |
ybiW |
-9.49 |
0.063221 |
47 -- 54 |
1 -- 8 |
putative pyruvate formate lyase |
b3951 |
_____________46_______55\n_____________|________|\n5'-ACC...UUUUC________CACAC...CGC-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
48 -- 54 |
1 -- 7 |
-12.4662 kcal/mol |
0.878635 kcal/mol |
2.11603 kcal/mol |
46 55@LB@ | |@LB@5'-ACC...UUUUC CACAC...CGC-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -12.4662 kcal/mol@LB@Unfolding Energy - mRNA 0.878635 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 47 -- 54@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 1 -- 7@LB@ |
194 |
0.008663 |
0.1558 |
b0213 |
yafS |
-5.39 |
0.521143 |
17 -- 34 |
51 -- 73 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________16______________________35\n_____________|_______________________|\n5'-UGG...GGUGA_______________________GCCAG...UCA-3'\n______________GAAAUAU__GGCC___UCCGGUU\n______________:||||||__:|||___||||:||\n______________UUUUAUA__UCGG___AGGCUAA\n3'-AUU...GCCGA_______AG____UUU_______UGCAC...AUG-5'\n_____________|_______________________|\n_____________74______________________50\n |
28 -- 34 |
51 -- 57 |
-15.2768 kcal/mol |
3.69768 kcal/mol |
6.213 kcal/mol |
16 35@LB@ | |@LB@5'-UGG...GGUGA GCCAG...UCA-3'@LB@ GAAAUAU GGCC UCCGGUU@LB@ :|||||| :||| ||||:||@LB@ UUUUAUA UCGG AGGCUAA@LB@3'-AUU...GCCGA AG UUU UGCAC...AUG-5'@LB@ | |@LB@ 74 50@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.2768 kcal/mol@LB@Unfolding Energy - mRNA 3.69768 kcal/mol@LB@Unfolding Energy - sRNA 6.213 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 51 -- 73@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 51 -- 57@LB@ |
123 |
0.004171 |
0.1178 |
b2989 |
yghU |
-8.31 |
0.130595 |
46 -- 54 |
49 -- 57 |
putative S-transferase |
|
_____________45________55\n_____________|_________|\n5'-UUA...UGUGC_________CUGCU...CGC-3'\n______________UCUGAUUAC\n______________||:||||||\n______________AGGCUAAUG\n3'-AUU...GGUUU_________CACUU...AUG-5'\n_____________|_________|\n_____________58________48\n |
48 -- 54 |
49 -- 55 |
-9.38135 kcal/mol |
0.766517 kcal/mol |
0.318327 kcal/mol |
45 55@LB@ | |@LB@5'-UUA...UGUGC CUGCU...CGC-3'@LB@ UCUGAUUAC@LB@ ||:||||||@LB@ AGGCUAAUG@LB@3'-AUU...GGUUU CACUU...AUG-5'@LB@ | |@LB@ 58 48@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -9.38135 kcal/mol@LB@Unfolding Energy - mRNA 0.766517 kcal/mol@LB@Unfolding Energy - sRNA 0.318327 kcal/mol@LB@@LB@Position - mRNA 46 -- 54@LB@Position - sRNA 49 -- 57@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 49 -- 55@LB@ |
67 |
0.001147 |
0.05856 |
b2319 |
usg |
-10.96 |
0.023185 |
203 -- 221 |
18 -- 36 |
putative semialdehyde dehydrogenase |
|
_____________202_________________222\n_____________|___________________|\n5'-GAG...ACCAU_________C_________GCCGU...AAA-3'\n______________GUCUGAAGG_UGGAACAUU\n______________|||||||:|_|:||||||:\n______________CAGACUUUC_AUCUUGUAG\n3'-AUU...UUUUC_________U_________AAUGG...AUG-5'\n_____________|___________________|\n_____________37__________________17\n |
215 -- 221 |
18 -- 24 |
-22.956 kcal/mol |
5.32254 kcal/mol |
6.60045 kcal/mol |
202 222@LB@ | |@LB@5'-GAG...ACCAU C GCCGU...AAA-3'@LB@ GUCUGAAGG UGGAACAUU@LB@ |||||||:| |:||||||:@LB@ CAGACUUUC AUCUUGUAG@LB@3'-AUU...UUUUC U AAUGG...AUG-5'@LB@ | |@LB@ 37 17@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -22.956 kcal/mol@LB@Unfolding Energy - mRNA 5.32254 kcal/mol@LB@Unfolding Energy - sRNA 6.60045 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 18 -- 36@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 18 -- 24@LB@ |
175 |
0.007291 |
0.1466 |
b1498 |
ydeN |
-8.19 |
0.139530 |
95 -- 124 |
45 -- 67 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________94_____________________________125\n_____________|______________________________|\n5'-AUU...CUUUU______________CUAUCUCU________CUAAC...UAA-3'\n______________UUUAGCUAAAUCUG________UUAUGUGA\n______________||:|||:|||||:|________|||:||||\n______________AAGUCGGUUUAGGC________AAUGCACU\n3'-AUU...UUUAU______________U_______________UCAUU...AUG-5'\n_____________|______________________________|\n_____________68_____________________________44\n |
118 -- 124 |
45 -- 51 |
-22.2428 kcal/mol |
5.90754 kcal/mol |
8.16749 kcal/mol |
94 125@LB@ | |@LB@5'-AUU...CUUUU CUAUCUCU CUAAC...UAA-3'@LB@ UUUAGCUAAAUCUG UUAUGUGA@LB@ ||:|||:|||||:| |||:||||@LB@ AAGUCGGUUUAGGC AAUGCACU@LB@3'-AUU...UUUAU U UCAUU...AUG-5'@LB@ | |@LB@ 68 44@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -22.2428 kcal/mol@LB@Unfolding Energy - mRNA 5.90754 kcal/mol@LB@Unfolding Energy - sRNA 8.16749 kcal/mol@LB@@LB@Position - mRNA 95 -- 124@LB@Position - sRNA 45 -- 67@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
168 |
0.006917 |
0.1448 |
b3070 |
yqjH |
-8.25 |
0.134865 |
172 -- 181 |
49 -- 58 |
putative siderophore interacting protein |
|
_____________171________182\n_____________|__________|\n5'-ACU...GAUAU__________CAUCA...AGC-3'\n______________AUCUGAUUAC\n______________|||:||||||\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
175 -- 181 |
49 -- 55 |
-10.8722 kcal/mol |
2.31397 kcal/mol |
0.318367 kcal/mol |
171 182@LB@ | |@LB@5'-ACU...GAUAU CAUCA...AGC-3'@LB@ AUCUGAUUAC@LB@ |||:||||||@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -10.8722 kcal/mol@LB@Unfolding Energy - mRNA 2.31397 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |