20 |
9.41e-05 |
0.01655 |
b0721 |
sdhC |
-12.56 |
0.006704 |
146 -- 157 |
4 -- 15 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________145__________158\n_____________|____________|\n5'-UCC...AGUUA____________GUAGU...CCG-3'\n______________ACCUCUGUGCCC\n______________||||||||:|||\n______________UGGAGACAUGGG\n3'-AUU...UAGAA____________AUG-5'\n_____________|____________|\n_____________16___________3\n |
151 -- 157 |
4 -- 10 |
-23.3451 kcal/mol |
4.99288 kcal/mol |
5.82084 kcal/mol |
145 158@LB@ | |@LB@5'-UCC...AGUUA GUAGU...CCG-3'@LB@ ACCUCUGUGCCC@LB@ ||||||||:|||@LB@ UGGAGACAUGGG@LB@3'-AUU...UAGAA AUG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -23.3451 kcal/mol@LB@Unfolding Energy - mRNA 4.99288 kcal/mol@LB@Unfolding Energy - sRNA 5.82084 kcal/mol@LB@@LB@Position - mRNA 146 -- 157@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 4 -- 10@LB@ |
12 |
3.867e-05 |
0.01134 |
b0728 |
sucC |
-9.87 |
0.049323 |
145 -- 186 |
43 -- 73 |
succinyl-CoA synthetase beta subunit |
|
_____________144_________________________________________187\n_____________|___________________________________________|\n5'-CGC...GAUAC_____________UACGGUUUAAA____AA_____________GAUGG...AAG-3'\n______________GAAAUAUUCGGUC___________AGAU__CGAUUAC_UGAAG\n______________:||||||||:|:|___________|:||__|||||||_|||||\n______________UUUUAUAAGUCGG___________UUUA__GCUAAUG_ACUUC\n3'-AUU...GCCGA____________________________G________C_____AUUUU...AUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________42\n |
175 -- 181 |
49 -- 55 |
-26.5157 kcal/mol |
7.48621 kcal/mol |
9.17828 kcal/mol |
144 187@LB@ | |@LB@5'-CGC...GAUAC UACGGUUUAAA AA GAUGG...AAG-3'@LB@ GAAAUAUUCGGUC AGAU CGAUUAC UGAAG@LB@ :||||||||:|:| |:|| ||||||| |||||@LB@ UUUUAUAAGUCGG UUUA GCUAAUG ACUUC@LB@3'-AUU...GCCGA G C AUUUU...AUG-5'@LB@ | |@LB@ 74 42@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -26.5157 kcal/mol@LB@Unfolding Energy - mRNA 7.48621 kcal/mol@LB@Unfolding Energy - sRNA 9.17828 kcal/mol@LB@@LB@Position - mRNA 145 -- 186@LB@Position - sRNA 43 -- 73@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |
75 |
0.001328 |
0.06227 |
b1748 |
astC |
-8.39 |
0.124654 |
121 -- 127 |
1 -- 7 |
succinylornithine transaminase PLP-dependent |
|
_____________120_____128\n_____________|_______|\n5'-UCA...CACGA_______AAUCU...UGU-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.9071 kcal/mol |
1.50434 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UCA...CACGA AAUCU...UGU-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -11.9071 kcal/mol@LB@Unfolding Energy - mRNA 1.50434 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
114 |
0.003723 |
0.1147 |
b2327 |
yfcA |
-8.38 |
0.125082 |
22 -- 29 |
1 -- 8 |
TauE/TSUP family inner membrane protein |
|
_____________21_______30\n_____________|________|\n5'-CAU...UACGU________CGAUA...GUG-3'\n______________UGCCCUGC\n______________|:||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
23 -- 29 |
1 -- 7 |
-12.241 kcal/mol |
1.76759 kcal/mol |
2.11603 kcal/mol |
21 30@LB@ | |@LB@5'-CAU...UACGU CGAUA...GUG-3'@LB@ UGCCCUGC@LB@ |:||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -12.241 kcal/mol@LB@Unfolding Energy - mRNA 1.76759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 22 -- 29@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 1 -- 7@LB@ |
140 |
0.005114 |
0.1284 |
b3993 |
thiE |
-7.64 |
0.188958 |
243 -- 250 |
4 -- 11 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________242______251\n_____________|________|\n5'-CAC...CAGGA________GGUGG...UAC-3'\n______________CUGUACCC\n______________||||||||\n______________GACAUGGG\n3'-AUU...AUGGA________AUG-5'\n_____________|________|\n_____________12_______3\n |
244 -- 250 |
4 -- 10 |
-13.9053 kcal/mol |
2.83489 kcal/mol |
3.45361 kcal/mol |
242 251@LB@ | |@LB@5'-CAC...CAGGA GGUGG...UAC-3'@LB@ CUGUACCC@LB@ ||||||||@LB@ GACAUGGG@LB@3'-AUU...AUGGA AUG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -13.9053 kcal/mol@LB@Unfolding Energy - mRNA 2.83489 kcal/mol@LB@Unfolding Energy - sRNA 3.45361 kcal/mol@LB@@LB@Position - mRNA 243 -- 250@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 4 -- 10@LB@ |
89 |
0.002377 |
0.09395 |
b4136 |
dsbD |
-10.47 |
0.032769 |
211 -- 231 |
1 -- 22 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________210____________________232\n_____________|______________________|\n5'-UGC...UCAAC_______UA_G___________UACUU...CGG-3'\n______________GCAUCUU__C_CUG_AUCCUGC\n______________:||||||__|_|||_|:|||:|\n______________UGUAGAA__G_GAC_UGGGAUG\n3'-AUU...UAUCU_______UG_A___A_______-5'\n_____________|_____________________|\n_____________23____________________1\n |
225 -- 231 |
1 -- 7 |
-23.5098 kcal/mol |
5.0672 kcal/mol |
7.99236 kcal/mol |
210 232@LB@ | |@LB@5'-UGC...UCAAC UA G UACUU...CGG-3'@LB@ GCAUCUU C CUG AUCCUGC@LB@ :|||||| | ||| |:|||:|@LB@ UGUAGAA G GAC UGGGAUG@LB@3'-AUU...UAUCU UG A A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.47 kcal/mol@LB@Hybridization Energy -23.5098 kcal/mol@LB@Unfolding Energy - mRNA 5.0672 kcal/mol@LB@Unfolding Energy - sRNA 7.99236 kcal/mol@LB@@LB@Position - mRNA 211 -- 231@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 1 -- 7@LB@ |
120 |
0.003999 |
0.1172 |
b2582 |
trxC |
-9.28 |
0.072721 |
206 -- 219 |
4 -- 16 |
thioredoxin 2 |
|
_____________205____________220\n_____________|______________|\n5'-CUC...AUGAA____G_________AUUGU...UUG-3'\n______________UACC_UUUGUACCC\n______________||||_|:|||||||\n______________AUGG_AGACAUGGG\n3'-AUU...GUAGA______________AUG-5'\n_____________|______________|\n_____________17_____________3\n |
213 -- 219 |
4 -- 10 |
-18.1109 kcal/mol |
2.27225 kcal/mol |
6.59015 kcal/mol |
205 220@LB@ | |@LB@5'-CUC...AUGAA G AUUGU...UUG-3'@LB@ UACC UUUGUACCC@LB@ |||| |:|||||||@LB@ AUGG AGACAUGGG@LB@3'-AUU...GUAGA AUG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -18.1109 kcal/mol@LB@Unfolding Energy - mRNA 2.27225 kcal/mol@LB@Unfolding Energy - sRNA 6.59015 kcal/mol@LB@@LB@Position - mRNA 206 -- 219@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 4 -- 10@LB@ |
65 |
0.001093 |
0.05856 |
b1519 |
tam |
-11.83 |
0.011992 |
187 -- 231 |
1 -- 50 |
trans-aconitate methyltransferase |
|
_____________186____________________________________________________232\n_____________|______________________________________________________|\n5'-UUU...CGCUG_____________AAAU______C_________C__________U___A_____ACUUU...AAU-3'\n______________ACG_GGAGUAAAA____GUCUGA____UGGAAC______CCUCU_UAU_UCUAC\n______________|||_|:|||||||____||||||____|:||||______|||||_||:_:||||\n______________UGC_CUUCAUUUU____CAGACU____AUCUUG______GGAGA_AUG_GGAUG\n3'-AUU...GCUAA___A_________C_________UUCU______UAGAAU_____C_________-5'\n_____________|_____________________________________________________|\n_____________51____________________________________________________1\n |
191 -- 197 |
39 -- 45 |
-32.7669 kcal/mol |
8.27841 kcal/mol |
12.6772 kcal/mol |
186 232@LB@ | |@LB@5'-UUU...CGCUG AAAU C C U A ACUUU...AAU-3'@LB@ ACG GGAGUAAAA GUCUGA UGGAAC CCUCU UAU UCUAC@LB@ ||| |:||||||| |||||| |:|||| ||||| ||: :||||@LB@ UGC CUUCAUUUU CAGACU AUCUUG GGAGA AUG GGAUG@LB@3'-AUU...GCUAA A C UUCU UAGAAU C -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -32.7669 kcal/mol@LB@Unfolding Energy - mRNA 8.27841 kcal/mol@LB@Unfolding Energy - sRNA 12.6772 kcal/mol@LB@@LB@Position - mRNA 187 -- 231@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
188 |
0.008316 |
0.1556 |
b3406 |
greB |
-8.11 |
0.146040 |
42 -- 55 |
52 -- 65 |
transcript cleavage factor |
|
_____________41_____________56\n_____________|______________|\n5'-AUU...GUCAC______________AUGAA...UGA-3'\n______________CAGCUAAAUCUGGU\n______________||||:|||||:|:|\n______________GUCGGUUUAGGCUA\n3'-AUU...UAUAA______________AUGCA...AUG-5'\n_____________|______________|\n_____________66_____________51\n |
49 -- 55 |
52 -- 58 |
-18.5321 kcal/mol |
4.27254 kcal/mol |
6.17277 kcal/mol |
41 56@LB@ | |@LB@5'-AUU...GUCAC AUGAA...UGA-3'@LB@ CAGCUAAAUCUGGU@LB@ ||||:|||||:|:|@LB@ GUCGGUUUAGGCUA@LB@3'-AUU...UAUAA AUGCA...AUG-5'@LB@ | |@LB@ 66 51@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -18.5321 kcal/mol@LB@Unfolding Energy - mRNA 4.27254 kcal/mol@LB@Unfolding Energy - sRNA 6.17277 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 52 -- 65@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 52 -- 58@LB@ |
91 |
0.002527 |
0.0977 |
b4393 |
trpR |
-12.48 |
0.007130 |
9 -- 21 |
43 -- 55 |
transcriptional repressor tryptophan-binding |
|
_____________8_____________22\n_____________|_____________|\n___5'-GAGACGCG_____________AACGU...AUC-3'\n______________CGGUUAUGUGAAG\n______________||:|||:||||||\n______________GCUAAUGCACUUC\n3'-AUU...UUUAG_____________AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
15 -- 21 |
43 -- 49 |
-16.824 kcal/mol |
1.08541 kcal/mol |
3.2693 kcal/mol |
8 22@LB@ | |@LB@ 5'-GAGACGCG AACGU...AUC-3'@LB@ CGGUUAUGUGAAG@LB@ ||:|||:||||||@LB@ GCUAAUGCACUUC@LB@3'-AUU...UUUAG AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -16.824 kcal/mol@LB@Unfolding Energy - mRNA 1.08541 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 9 -- 21@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 43 -- 49@LB@ |